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# Shigella sonnei Ss046, Ss046

>SSO_4515 putative inner membrane protein
MLILAIGLPDSKGFLWLANDKNYHMILVIIINERDETMLQRTLGSGWGVL
LPGLLIAGLMYADLSPDQWRIVILMGLVLTPVMLYHKQLRHYVLLPSCLA
LIAAIMLMIMNLNQG
>SSO_1856 putative DEOR-type transcriptional regulator
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRA
HGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNAL
LARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPL
TRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVL
TDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTVHVVDI
>SSO_1262 putative bacteriophage protein
MNNQTMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPALRELMQ
AKHRAQKAVDELVDCVAELETRVGKFEKLVQEVLR
>SSO_1215 conserved hypothetical protein
MHCADEGFEKPLPHLFEAAVFLMGFTLWGKLEFNKRDGFLDCPHGDRVCG
GGMVSKVDILQLTGHFFTNFNGRDYIENIQNLFDNQLASNHIRNQFLIGI
QRLGHRKLLIAF
>SSO_1720 putative transcriptional regulator LYSR-type
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEK
NSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLT
GARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVV
RVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDI
GIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVV
VSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVP
SGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRK
SMPF
>SSO_2613 conserved hypothetical protein
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLR
KNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQG
GDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRT
RIQDAIDVKLRA
>SSO_3645 putative FADA-type transcriptional regulator
MIANNQDREAFNEADIRYHEAVLQSVHNPVLQQLSIAISSLQRAVFERTW
MGDEANMPQTLQEHKALFDAIRHQDGDAAEQAALTMIASSTRRLKEIT
>SSO_4438 conserved hypothetical protein
MVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMG
FKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>SSO_2455 sucrose operon repressor
MMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLSARKMRAQGRKPSTL
AVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINIFSEDDAARAARQLL
AHRPDGIIYTTMGLRHITLPESLYGENIVLANCVADDPALPSYIPDDYTA
QYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFEQAWRDAGRDLAEVK
QFHMATGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAFVAYQVLLAK
GVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHDIIGREAALHIIEGRE
GGRVTRIPCPLLIRCST
>SSO_1698 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system
MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLL
ESQGYIIARPQSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQAS
REPSVVPFASAFPDPRLFPLQQLNRSLAQVSKTATAMSVIENLPPGNAEL
RQAIARRYALQGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPC
FYGALQALERLRLKALSVATDVKEGIDLQALELALQDYPVKACWLMTNSQ
NPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDR
HDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLA
LVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHSDSGYF
LWLELPEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWQWG
EREEQAVKQLGKLIQERL
>SSO_3739 conserved hypothetical protein
MQLEEVAKALKELGHPTRLFIFKHLVKAGEQGLPVGELQKQLGIPGSTLS
HHISALVSVGLVKQNRESRTLMCVSQYAMLEAIIEFLREECCVNSKIA
>SSO_1433 conserved hypothetical protein
MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELG
TNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK
>SSO_1508 conserved hypothetical protein
MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKIAEVPKGSFYHYFR
SKEAFGVAMLERHYATYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQH
GTISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGHENHCL
TFCGEPLQQAQVLYALWLGANLQAKISRNSEPLENALAHVKTIIATPAV
>SSO_0871 hypothetical bacteriophage protein
MRTYLSGLTASGYAHPKIIPGAIYLDKNGNRVTVKELMFDRVYFIRDGYS
FHSSLNVEIFISRFRREIPLSRNNHVSCMDVDKKLQELKNMIAAWREQK
>SSO_0802 putative transcriptional regulator
MDKKLKIADIAARTGLSPSTVSRVLAGKANTSARAREQVLACARELGVMD
GMAAGRMLLNNLIIFAPQRAFDQRSDIFYYRVIQSISKALSPHEVRLRYC
ALEEFDSDPALFLSRMNEADTQAAILLGIDDPHIHDLAADLAKPCVLINC
RDERMRLPAIAPDHRLIGAFAARYLFEMGHREVMNVMCLRRYTMEQRFAG
IKESWRQHNLAFHHDRHLLNISSFSAKEAEEKVGAWLDAANGKTLPTAFL
VGGDFMAAGTVNALHRRGLRVPQDVSVMSIDGFNLAAIEDVPLTAVHVPR
DELGNEAVQMLQQRLIRPDAPVGSLLLHGRLAVRESVRRVRPGKGNTAVE
REGLYDTQLSIPNARLP
>SSO_2309 putative regulator
MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYLLLNELR
RQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLL
CHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPA
AVQQSIIEGLVWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYPDVR
CVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIACARDISRLLG
WKSPFDLQAS
>SSO_2474 putative ARAC-type regulatory protein
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPR
LDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFA
PTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQ
NIIQPLVLSLLHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTR
ESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIH
EVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
>SSO_1334 putative regulator
MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYR
FLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREI
SRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKV
LLAWRDLDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNE
EQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAAR
KISAQMGYHDYPF
>SSO_0963 conserved hypothetical protein
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYL
RACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSK
YSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAK
MCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTP
KQEFPAELE
>SSO_2473 putative 2-component transcriptional regulator
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAI
FLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYIL
KPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVT
PINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFC
VNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
>SSO_2811 conserved hypothetical protein
MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGL
SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP
>SSO_1624 putative ARAC-type regulatory protein
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE
IGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEE
RNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHP
WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSV
NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHMGMNTGNTMSA
LAI
>SSO_0796 putative toxin
MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLIR
EVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEK
LAQESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQ
KHGAK
>SSO_2861 conserved hypothetical protein
MTANAARAVKATRELVNAVPFLGGSDSEDDYREALELVEYLIEEDDTNPL
IDFLASRIAEYENNNQEFAEFDKAVAAMPVGVALLRTLIDQHNLTYADLK
NEIGSKSLVSQILSGQRSLTISHIKALSARFGVKPEWFL
>SSO_P053 conserved hypothetical protein
MSVKLRLPQCTDNKKTETDAIYDKVRSSYLLSCILKKNKNVGLILHAPSF
VSVSEKIARIVMANYSRNWSNSELASAVLMSESSLKRRMYKEVGSISTFV
HKIKLTEAIRKLRRTNTPISVISSELGYSSPSYFSKVFFKYLKTYPQNIR
KKNGR
>SSO_0409 putative acetyltransferase
MVDKHEEITLPIVLSCNYQSDITYPGQKQFDCGNPVIDKFVRASLKKSVR
NSDCAAKALIDRQSGELIGICTFTAYSLEKQRVSGVLQGSQPSEIGVVRL
VMLGVARKYQKRGFGQDLLCDFFEHVKIIHQALPIKGVYLDADPAAINFY
ARLGFVQLSATPNAFGAVPMFLAIQHILAA
>SSO_0451 acrR, acrAB operon repressor
MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW
HFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST
VTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE
AKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLE
MYLLCPTLRNPATNE
>SSO_4291 adiY, putative ARAC-type regulatory protein
MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL
NNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV
AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDS
VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR
YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER
TVA
>SSO_0070 araC, transcriptional regulator for ara operon
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLT
IRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRP
RAYWHEWLNWPPIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSEL
LAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASV
AQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVG
RNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>SSO_4551 arcA, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL
VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS
LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED
>SSO_3379 argR, repressor of arg regulon; cer-mediated site specific recombination
MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRML
TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHT
SPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILE
LFDQEL
>SSO_3736 arsR, transcriptional repressor of chromosomal ars operon
MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRH
LALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKVQAIV
RNLARQNCSGDSKNICS
>SSO_2858 ascG, ascBF operon repressor
MMTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL
LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG
KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNR
RLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA
GYKDALAQHGIALNEKLIANGKWTPASGAEGVETLLERGAKFSALVASND
DMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYIVPALSSVKIPVTEMI
QEIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIALSR
>SSO_3876 asnC, regulator for asnA, asnC and gidA
MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAG
IITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLAEVTEAYY
TTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTI
KP
>SSO_2131 baeR, transcriptional response regulatory protein
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV
RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL
EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRF
QASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRT
IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV
>SSO_4288 basR, transcriptional regulatory protein
MKILIVEDDTLLLQGLILAAQTEGYTCDGVTTARMAEQSLEAGHYSLVVL
DLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLV
KPFALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELIL
TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK
VGKARIRTVRGFGYMLVANEEN
>SSO_3911 bglG, positive regulation of bgl operon
MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKCAGERINSSGIEKEY
ALSSHELNGRLSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTD
HCQFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLP
KDEVGFIAMHLVSAQMSGNMEDVAGVTQLMREMLQLIKFQFSLNYQEESL
SYQRLVTHLKFLSWRILEHASINDSDESLQQAVKQNYPQAWQCAERIAIF
IGLQYQRKISPAEIMFLAINIERVRKEH
>SSO_4513 bglJ, 2-component transcriptional regulator
MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDA
MSRISFAAVIFSFSAMRSERREGLSCLTELAIKFPRTRRLVIADDDIEAR
LIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQS
RTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSD
AGLLEAADILLCMRHCEASNVLHPY
>SSO_2042 cbl, transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM
MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFV
RRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATT
HTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASE
RLSNDPQLVAFPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQG
ITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGE
QEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI
KRQVMENSEEEIDYQI
>SSO_1423 celD, negative transcriptional regulator of cel operon
MMQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLV
LTGRYFQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRF
FEQHYLPLLPYCFVASQVYRTNNAFLTYVETVISSLNFRETGLEEFVEMV
TFYVINRLRHYREEQVIDDVPQWLKSTVEKMHDKEQFSESALENMVTLSA
KSQEYLTRATQRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGY
SSPSLFIKTFKKLTSFTPKSYRKKLTEFNQ
>SSO_0573 citB, sequence similarity to Shigella regulator
MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK
PGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCG
VFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGE
PKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISCTTARRYLEY
CASRHLIIAEIVHGKVGRPQRIYHSG
>SSO_1140 cobB, putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase
MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAG
ISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ
QPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL
LKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEI
YMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEF
AEKYYGPASQVVPEFVEKLLKGL
>SSO_4082 cpxR, transcriptional regulator in 2-component system
MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLL
DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK
PFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF
DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS
>SSO_4548 creB, catabolic regulation response regulator
MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDV
MILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADD
YVAKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFD
TPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIK
TLRAKLRAINPDLSPINTHRGMGYSLRGL
>SSO_2617 csiE, conserved hypothetical protein
MLMGDLQMMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVD
DDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRR
GFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKR
FETRDIHFLCLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGR
HWQRRALQPVPPDEPLFMALLFSMLRVPDPLRDAHQRDRQLRQSIKRLVN
HFRELGNVRFYDEQGLCDQLYTHLAQALNRSLFAIGIDNTLPEEFARLYP
RLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQENDLHEKQIIL
LTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAPY
TMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA
>SSO_3832 cspA, cold shock protein 7.4, transcriptional activator of hns
MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQK
VSFTIESGAKGPAAGNVTSL
>SSO_1337 cspC, cold shock protein
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV
EFEIQDGQKGPAAVNVTAI
>SSO_0867 cspD, cold shock protein
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQF
DVHQGPKGNHASVIVPVEVEAAVA
>SSO_0577 cspE, cold shock protein
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRV
EFEITNGAKGPSAANVIAL
>SSO_0997 cspG, cold shock protein-like protein
MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQK
VEFSIEQGQRGPAAANVVTL
>SSO_0995 cspH, cold shock-like protein
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLR
VEFCRVNGLRGPTAANVYLS
>SSO_1868 cysB, positive transcriptional regulator for cysteine regulon
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFS
RSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATT
HTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFTIATE
ALHLYEDLVMLPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFG
FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP
VADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV
DAAVALRSNEEIEVMFKDIKLPEK
>SSO_4103 cytR, regulator for deo operon, udp, cdd, tsx, nupC, and nupG
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAARE
VGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLV
LIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMV
MANEFAPELELPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCH
YRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLLDLPQPPTAVF
CHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR
YEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIRGSTRALP
>SSO_1788 dbpA, ATP-dependent RNA helicase
MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTG
SGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPN
TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTL
VMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQR
DPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT
KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV
AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA
QRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKKAKMRPGDV
LGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
SRVRLLK
>SSO_3308 deaD, inducible ATP-independent RNA helicase
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQ
AECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPT
RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTP
GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT
ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN
EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI
GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR
LEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ
GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV
GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
>SSO_0825 deoR, transcriptional repressor for deo operon, tsx, nupG
METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVV
LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDC
GTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNA
IFNPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMA
QKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKL
MY
>SSO_0778 dinG, probably ATP-dependent helicase
MALTAALKAQIAAWYKALQEQIPDFIPRVPQRQMIADVAKTLAGEEGRHL
AIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL
KKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTANNQ
EEQKRCAKLKGDLDTYRWDGLRDHTDIVIDDDLWRRLSTDKASCLNRNCY
YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG
HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI
PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ
RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS
KLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI
VIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF
LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL
KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL
IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG
IVKKKEKTKSPRRRRR
>SSO_3213 ebgR, regulator of ebg operon
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTS
SARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLAIEL
TNCYEHNGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSG
YDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYG
RLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVL
RAIHERGLNIPQDISLFSVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLV
YEKARDGRALPLLVFVPSKLKLRGTTR
>SSO_2828 emrR, regulator of plasmid mcrB operon
MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKA
QGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGW
IERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQ
LEQITRKLLSRLDQMEQDGVVLEAMS
>SSO_3405 envR, putative transcriptional regulator
MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTFNDIADAANVTRGAIYW
HFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYI
AKIPRQQALLKILYHKCEFNDGMLAEGVIREKMGFNPQTLREVLQACQQQ
GCVANNLDLDVVMIIIDGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRM
FMPDENITKLIHQTNELSVM
>SSO_0512 envY, envelope protein
MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTL
NHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRL
AANHSKQQPSKPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS
VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENISYSQIVTECRMR
YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK
VMW
>SSO_2460 evgA, putative positive transcription regulator (sensor EvgS)
MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVI
IDVDIPGVNGILVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFV
SKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEIS
VMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQR
NKIG
>SSO_3253 exuR, negative regulator of exu regulon, exuT, uxaAC, and uxuB
MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVR
EAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQA
RQLIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQV
ALATQNSALAAIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILK
ALIRKDPHAAKLAMWQHLENTKIMLFNETSDDFEFNADRYLFAENPVVHL
DTATSGSK
>SSO_1179 fadR, negative regulator for fad regulon, and positive activator of fabA
MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDN
LLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFR
GLAFASGNPIYGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALC
SEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR
>SSO_0681 farR, transcriptional regulator of succinylCoA synthetase operon
MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQAL
RQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEIL
IFEVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFP
DLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKP
ILEKVSRGYLVDGRVFEYSRNAFNTDDYKFTLIAQRKSSR
>SSO_4465 fecI, probable RNA polymerase sigma factor
MSDRATTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM
VSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS
PEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSI
SSVKKYVAKAVEHCLLFRLEYGL
>SSO_3402 fis, site-specific DNA inversion stimulation factor
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>SSO_1091 flgM, flagellar protein
MSIDRTSPLKPVSTVQPRETTDASVTNTRAAKTTASTSTSVTLSDAQAKL
MQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN
>SSO_1194 fliA, alternative sigma factor 28
MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGI
GLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREV
AQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWR
EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLY
YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
>SSO_0087 fruR, transcriptional repressor of fru operon and others
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN
AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE
DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA
LDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG
FRTAWKDDPREVHFLYANSYEREVAAQLFEKWLETHPMPQALFTTSFALL
QGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
>SSO_2962 fucR, positive regulator of the fuc operon
MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILR
NHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALD
ASSTCWYLARQLPDINIQVFTNSHPICHELGKRERIQLISSGGTLERKYG
CYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRA
AQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSLVTA
>SSO_2997 galR, repressor of galETK operon
MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNAN
ARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHN
EQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPG
FENRCIALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYD
ALAESGIAANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACYNDSMAA
GAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA
ELALALADNRPLPEITNVFSPTLVRRHSVSTPSLEASHHATSD
>SSO_2207 galS, mgl repressor
MSELDYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQ
KYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIP
GMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIGYLSSSHGIE
DDAMRKAGWMSALKEQDIIPPESWIGTGTPDMPGGEAAMVELLGRNLQLT
AIFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVR
YPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAIT
NSTNQAM
>SSO_2137 gatR, Galactitol utilization operon repressor
MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGV
VTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEG
MTVILDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGG
TVRHKTRSMHGSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISG
AMVTAANKVIAVLDSSKFNRRGFNQVLPIEKIDIIITDDAVSEVDKLALQ
KTRVKLITV
>SSO_2965 gcvA, positive regulator of gcv operon
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGL
KLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSL
LPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRG
NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDW
QTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEA
GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR
FRYEQ
>SSO_3660 glpR, repressor of the glp operon
MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLIL
RHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIG
TTPEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGG
IIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSR
HVMLVVDHSKFGRNAMVNMGSISMVDAVYTDAPPPVSVMQVLTDHHIQLE
LC
>SSO_3680 gntR, regulator of gluconate (gnt) operon
MTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRAIGVL
LPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWN
IDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAVGFDNFEAAR
QMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQ
SSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDM
AIAGFHGHDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKML
DLGFTLSPGGSI
>SSO_3329 greA, transcription elongation factor
MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQ
GFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTY
RIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKV
EYL
>SSO_3537 greB, Transcription elongation factor
MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQY
NKKRLREIDRRVRYLTKCMENLKIVNYSPQQEGKVFFGAWVEIENDDGVT
HRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYV
NAIEYVKP
>SSO_2850 gutM, glucitol operon activator
MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGRSSGRFK
PRVVVAIALDDQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIF
PHDPLSQNALSLALKLKRG
>SSO_0065 hepA, probable ATP-dependent RNA helicase
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREV
FLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQ
RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQ
LVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR
QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS
HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDL
INYLASPVQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ
ALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD
FPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRMEALRAVNPNIRDDELTAIESNRQQVMESL
DQAGWRLDALRLIVVTHQ
>SSO_1613 hipB, persistence to inhibition of murein or DNA biosynthesis
MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPD
NTTLTTFFKILQSLELSMTLCDAKNASPEATEQQDLEW
>SSO_4500 hpcR, homoprotocatechuate degradative operon repressor
MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESPSMDFHD
LAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYN
RAQTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE
>SSO_2572 hyfR, putative 2-component regulator, interaction with sigma 54
MFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSPVQLIELH
VLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAELRFIRT
HGCRFTPQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVL
VDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWC
SDLSASHCACLPRNMPGDSVLLTQTLQTRQPTLTHRADDLFLWQRDPLLL
LLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRI
AIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGVGDIIYQSQAMEDL
LQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCAAI
PASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQP
KLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYR
LNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRSIDAIPTEALRQLMS
WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSHLLPTLNEDSALRSS
MAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLS
RMQRLGLSVREVL
>SSO_2874 hypB, guanine-nucleotide binding protein
MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIKAPEFTP
SQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFA
ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI
RATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPA
SFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDV
EKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA
>SSO_3067 iciA, replication initiation inhibitor, binds to 13-mers at oriC
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPL
LVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNAD
SLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQA
LPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDM
HQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELA
SGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD
>SSO_4189 iclR, repressor of aceBA operon
MKMISTIQKKETVMVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWI
AESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAH
AFMVGSSFLQSRNLLAIVHSILRNLMEESGETVNMAVLDQSDHEAIIIDQ
VQCTHLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYT
HATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAA
ISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR
>SSO_4449 idnR, L-idonate transcriptional regulator
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYI
PNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTLIAN
YNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMD
VQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQ
GYCAPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLL
CRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLS
KIKNNDHNHNTVDLGYQIYHGNTL
>SSO_3944 ilvY, positive regulator for ilvC
MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVR
DNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVT
AAYSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPE
TLPGAVAFSMLENLAVVLIAPALPCPVRNQVSVEKPDWSTVPFIMADQGP
VRRRIELWFRRNKISNPMIYATVGGHEAMVSMVALGCGVALLPEVVLENS
PEPVRNRVMILDRSDEKTPFELGVCAQKKRLHEPLIEAFWRILPNHK
>SSO_0645 kdpE, regulator of kdp operon
MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLII
LDLGLPDGDGIEFIRDLRQWSPVPVIVLSARSEESDKIAALDAGADDYLS
KPFGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEV
HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR
QKLEQDPARPRHFITETGIGYRFML
>SSO_0298 lacI, transcriptional repressor of the lac operon
MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPN
RVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVE
RSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDV
SDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG
WHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMA
LGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTS
VDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLA
RQVSRLESGQ
>SSO_0083 leuO, probable transcriptional activator for leuABCD operon
MTHSTAMDSVFIRTRIFMFSEFYSFCFFLFYMHDKSYSSGLFLCIPIRER
ELSVTVELSMPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITR
AAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQ
ALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNI
HVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVAS
KNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQGM
AMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLPLKQNSRTCYLSW
HEAAGRDKGHQWMEEQLVSICKR
>SSO_4223 lexA, regulator for SOS(lexA) regulon
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQV
DPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGD
WL
>SSO_3801 lldR, transcriptional regulator
MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLRE
ALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFD
ILEARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRF
HLAIAEASHNIVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQ
AVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHARITRLPGEHN
EHSREKNA
>SSO_2346 lrhA, NADH dehydrogenase transcriptional regulator, LysR family
MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLE
QLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGV
LTIGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVD
LMVTTHRPSAFKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRD
MVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPIEMMSPYLRVL
SGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPMSAPE
GDDSLLIERDIE
>SSO_0890 lrp, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
MVDSKKRLGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR
RLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKL
EEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM
EEVKQSNRLVIKTR
>SSO_2999 lysR, positive regulator for lys
MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKL
FERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIAC
LPVFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTE
TLHTPAGTERTELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRT
DSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGVSVVNPLTALD
YAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSEHLQAGLPKLVTS
LDAILSSATTA
>SSO_1538 malI, repressor of malX and Y genes
MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAAIEELGF
VRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL
HGGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFA
SRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAER
VGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHNPTISAVVCY
NETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV
TWASTPARELGTTLADRMMQKITHEETHSRNLIIPARLIAAK
>SSO_3550 malT, positive regulator of mal regulon
MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS
QWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKR
QYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP
ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLS
SPIEAAESSWICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH
LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE
IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES
WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL
PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREGTMHAE
FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC
KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET
QEKTFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL
SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS
NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL
LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV
LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR
EINQHHRHKFAHFDENFVERLLNHPEVPELIHTSPLTQREWQVLGLIYSG
YSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQAAVQHAQKLLKMMGYG
V
>SSO_1597 marA, transcriptional activator of defense systems
MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK
ETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN
YFDVPPHKYRMTNMQGESRFLHPLNHYNS
>SSO_1598 marR, multiple antibiotic resistance protein
MVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLG
ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDL
HQELTKNLTADEVATLEHLLKKVLP
>SSO_4293 melR, regulator of melibiose operon
MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWHGQVEVN
VPFDGDVEYLINNEKVNINQGNITLFWACTPHQLTDTGTCQSMAIFNLPM
HLFLSWPLDKDLINHVTHGMVIKSLATQQLSPFEVRRWQQELNSPNEQIR
QLAIDEIGLMLKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFI
AENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRA
LLSDTDKSILDIALTAGFRSSSRFYSTFGKYVGMSPQQYRKLSQQRRQTF
PG
>SSO_4112 metJ, repressor of all met genes but metF
MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINP
ETWEY
>SSO_4002 metR, regulator for metE and metH
MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFV
RKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSC
IQWLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPR
SGLHYSPMFDYEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLD
VWRHFLQPAGVSPSLKSVDNTLLLIQMVAARMGIAALPHWVVESFERQGL
VVTKTLGEGLWSRLYAAVRDGEQRQPITEAFIRSARNHACDHLPFVKSAE
RPTYDAPTVRPGSPARL
>SSO_1134 mfd, transcription-repair coupling factor
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT
MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ
RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN
ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE
LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE
AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA
EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF
GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL
IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
>SSO_1570 mlc, putative NAGC-like transcriptional regulator
MVAENQLGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI
VREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLA
LRDLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIA
ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT
MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV
DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL
CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI
LFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL
IRLLQG
>SSO_3807 mtlR, repressor for mtl
MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAV
ELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLG
VINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPP
PQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISRISLKKAFQK
>SSO_P106 mxiE, MxiE
MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALVEHSHAE
KCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYH
LVLYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTW
RLVNGLLDVFLHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNIT
FLVKKINEKI
>SSO_2049 nac, nitrogen assimilation control protein
MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIR
TKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPG
TAASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEH
SPVAGVSSQALLKEDLFLVGTQDCPGQSVDVNAIAKMNLFLPSDYSAIRL
RVDEAFSLRRFTAKVIGEIESIATLTAAIASGMGVAVLPESAARSLCGAV
NGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQ
WQLGDAANLLI
>SSO_0630 nagC, transcriptional repressor of nag (N-acetylglucosamine) operon
MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVT
KITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATI
TLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI
SVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA
LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV
EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI
CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV
LLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILL
QHLLEN
>SSO_1956 narL, pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes
MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES
LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALK
RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTE
RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL
KSRVEAAVWVHQERIF
>SSO_2251 narP, nitrate/nitrite response regulator
MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR
LDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALID
AGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDP
FSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS
RVAATILFLQQRGAQ
>SSO_0022 nhaR, transcriptional activator of nhaA
MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQG
KLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG
VADALSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIIS
DCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEKSFPACLEERRLLIPGRR
SMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAYD
FYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAA
R
>SSO_3336 nlp, regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu
MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGE
MIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK
>SSO_4252 nrfB, formate-dependent nitrite reductase
MNMSVLRSLLTAGVLASGLLWSLNGITATPAAQASDDRYEVTQQRNPDAA
CLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMR
FNEPMYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQ
DTMQTLSDKGRIKICVDCHSDQRTNPNFNPASVPLLKEQP
>SSO_3315 nusA, transcription pausing; L factor
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQID
RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV
TFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNI
SLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRS
KPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE
DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA
EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE
PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA
RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA
>SSO_0393 nusB, transcription termination; L factor
MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE
LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY
KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK
>SSO_4155 nusG, component in transcription antitermination
MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVV
EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP
APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEE
VDYEKSRLKVSVSIFGRATPVELDFSQVEKA
>SSO_3536 ompR, response regulator
MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH
LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD
DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTR
EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS
IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>SSO_4134 oxyR, activator, hydrogen peroxide-inducible genes
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER
TSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPT
VGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVK
ESEAFIEVPLFDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCL
RDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERK
RDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGYFDKV
LKQAV
>SSO_P032 parB, plasmid segregation protein
MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTEIKVDHD
KVDTQTFVVEEVNGREQTALTPDSLKDITRTIHLQQFYPCIGIRTGDLIE
ILDGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREI
GLRLVRLKEAGMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSE
LTYADYRQLAELSERLRLGDISIDEVVKNISPSIELITADDNLSEDEVKN
SIMRLITKEMSSLLDSGVKDKAVVTLLWKFDSKDKFARKRVKGRTFSYEF
GRLPLEVQDKLDRMIALVLKDNLNSL
>SSO_0121 pdhR, transcriptional regulator for pyruvate dehydrogenase complex
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPS
LREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDL
LETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAV
LQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSS
HRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRERSLRRLE
QRKN
>SSO_2061 pduD, putative propanediol utilization protein: diol dehydratase medium subunit
MEINEKLLRQIIEDVLAEMQPSDKSVSFRAPVSATVPSAPDTGNFLTEIG
EAQQGTQQDEVIIAVGPAFGLAQTVNIIGIPHKNILREVIAGIEEEGIKA
RVIRCFKSSDVAFVAVEGDRLSGSGIAIGIQSKGTTVIHQQGLPPLSNLE
LFPQAPLLTLDTYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAI
LHIKETKYVVTGKKPQELRVTF
>SSO_4278 phnF, putative transcriptional regulator
MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAARFEVNRH
TLRRAIDQLVEKGWVQRRQGIGVLVLMRPFDYPLNAQARFSQNLLDQGSH
PTSEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGVALCLIDHYF
ADLTLWPTLQRFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLE
IPNMSPLLCVRTLNHRDGESSPAEYSVSLTRADMIEFTMEH
>SSO_4269 phnO, putative regulator, phn operon
MPACELRPATQYDTDAVYALICELKQAEFDHHAFRVGFSANLRDPNMRYH
LALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAW
AEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL
>SSO_0376 phoB, positive response regulator for pho regulon
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLI
LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGE
EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR
RLRKALEPGGHDRMVQTVRGTGYRFSTRF
>SSO_1148 phoP, transcriptional regulatory protein
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIV
DLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT
KPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKL
TAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKK
IQAQYPQEVITTVRGQGYLFELR
>SSO_2056 pocR, pdu/cob regulatory protein
MISAATLNSELINKIAQDFAQATSLAVVVVNIHGDEISELFNFTPFCQMM
RQHPQLSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLV
GFVLCGQVRLRNDDVDLVDILNVDDCWQADPELLNEFRKVPEMDYSRVMA
SADLLKLIVENCLKKQLNFVVIKENKSRSDSVRQTRAPNPHDNTVIFAKF
SVRLIRLRRRCIDSK
>SSO_1836 pspA, phage shock protein
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARA
LAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDL
IKSLEHEVTLVNDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSR
DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAEL
KADDAISEQLAQLKAKMKQDNQ
>SSO_1834 pspC, phage shock protein
MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLA
LFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLRE
MERYVTSDTFTLRSRFRQL
>SSO_1837 pspF, psp operon transcriptional activator
MANFIMAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELI
ASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR
FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV
CATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAI
QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNAVERSVYRHGTSDY
PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSL
QKGKYNQKRAAELLGLTYHQFRALLKKHQI
>SSO_1498 purR, transcriptional repressor for pur regulon, glyA, glnB, prsA, speA
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV
ARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNN
LEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEA
KADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLVGF
MKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIM
AMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET
AFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>SSO_3164 qseB, quorum sensing regulator B
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVIL
DLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLC
KPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTL
KPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRK
LGSDFIRTVHGIGYTLGEK
>SSO_3923 rbsR, regulator for rbs operon
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSAL
ARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGD
EQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPF
DGDSDLIQDNSLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYR
AAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMA
VGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA
IDVLIHRITQPTLQQQRLQLTPILMERGSA
>SSO_2009 rcsA, positive regulator for ctr capsule biosynthesis
MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSV
VFINEDCFIHDASNSQHIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKK
LLISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWM
AGQGTIQISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTN
GIFVNMR
>SSO_2276 rcsB, positive response regulator for colanic capsule biosynthesis
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDA
HVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLD
LDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKR
LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIA
LLNYLSSVTLSPADKD
>SSO_3753 recG, DNA helicase
MKGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHL
YPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFS
AAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTP
VYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRT
LHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQP
LSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGW
LAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRTDIIDRVRHACMTEGRQAYWVCTLIEESELLE
AQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT
PLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD
LLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETERYSNA
>SSO_2941 relA, (p)ppGpp synthetase I
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHP
DASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG
KSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVV
IKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED
YCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVY
GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG
VAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ
VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD
RDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGD
IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE
RIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASR
SDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>SSO_4015 rfaH, transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPL
FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASLAIVPSAVIHQLSVYK
PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI
KHSVKNTEFRKL
>SSO_4075 rhaS, positive regulator for rhaBAD operon
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVF
NGQPYTITGGTVCFVRAHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQ
LLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILF
MQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLS
LRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSD
SNHFSTLFRREFNWSPRDIRQGRDGFLQ
>SSO_3951 rhlB, putative ATP-dependent RNA helicase
MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQI
HADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT
LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLT
RPRTGNGPRRTGAPRNRRRSG
>SSO_0776 rhlE, putative ATP-dependent RNA helicase
MSFDYLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQV
EILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEK
LLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRG
QGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
AAAQ
>SSO_3954 rho, transcription termination factor Rho; polarity suppressor
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIF
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK
IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG
NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP
DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA
EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI
NKLAMTKTNDDFFEMMKRS
>SSO_1854 rnb, RNase II
MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAKKSYFIPPPQ
MKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIV
PDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY
ITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTI
DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF
TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW
RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA
ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR
KYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLY
ARFLKDKAGTGTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRGIIARPVA
>SSO_2691 rnc, RNase III
MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSY
VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGE
LKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPG
DKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP
VVGTGSSRRKAEQAAAEQALKKLELE
>SSO_0562 rnk, regulator of nucleoside diphosphate kinase
MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMP
HDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLG
LRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
>SSO_4546 rob, right origin-binding protein
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI
GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTP
ALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE
QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTT
ALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM
LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
>SSO_3436 rpoA, RNA polymerase, alpha subunit
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL
TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGR
GYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK
LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
>SSO_4160 rpoB, RNA polymerase, beta subunit
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE
AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKL
RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR
RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET
ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET
LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV
GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV
DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI
YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM
RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI
TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE
MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL
GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP
LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD
LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
>SSO_4161 rpoC, RNA polymerase, beta prime subunit
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE
RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG
MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ
LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV
RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK
HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN
LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK
PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI
QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG
AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT
DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF
LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP
KEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND
KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA
TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAG
LGGSDNE
>SSO_3204 rpoD, RNA polymerase, sigma(70) factor
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND
MGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRM
YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR
VEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED
GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEIL
KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE
TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI
AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG
LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
>SSO_2697 rpoE, RNA polymerase, sigma-E factor
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVV
QEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA
IEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE
LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR
>SSO_3699 rpoH, RNA polymerase, sigma(32) factor
MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAA
KTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN
QDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLY
LQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNK
STLQELADRYGVSAERVRQLEKNAMKKLRAAIEA
>SSO_3350 rpoN, RNA polymerase, sigma(54 or 60) factor
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQI
DTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGT
SGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDD
IGYLTVPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLL
IQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAV
NLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN
QHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQ
QQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHINTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
IMVARRTVAKYRESLSIPPSNQRKQLV
>SSO_2889 rpoS, RNA polymerase, sigma S (sigma38) factor
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA
TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR
LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI
RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE
QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT
QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE
RVRQIQVEGLRRLREILQTQGLNIEALFRE
>SSO_3756 rpoZ, RNA polymerase, omega subunit
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA
LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
>SSO_1552 rstA, response transcriptional regulatory protein (RstB sensor)
MNVMNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPD
LVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACD
YILKTTPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTID
PINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDG
LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE
>SSO_1202 sdiA, transcriptional regulator of ftsQAZ gene cluster
MQDTDFFSWRRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSLCVRHPV
PFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLF
SEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDEL
QLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEI
AMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI
>SSO_1514 slyA, transcriptional regulator for cryptic hemolysin
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQS
QIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEP
LISEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG
>SSO_4247 soxR, redox-sensing activator of soxS
MAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLAT
IGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGC
GCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
>SSO_4242 soxS, regulation of superoxide response regulon
MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL
GDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTP
SDYRHRL
>SSO_3755 spoT, (p)ppGpp synthetase II
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK
EQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL
NEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPP
ATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTT
TSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN
RN
>SSO_2851 srlR, regulator for gut (srl), glucitol operon
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVI
RTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAG
STVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA
SFHGQLAENAFEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAR
EVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALEEKGIDVI
ITGESNE
>SSO_2702 srmB, ATP-dependent RNA helicase
MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATR
SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN
VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS
LVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA
KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE
>SSO_3275 tdcA, transcriptional activator of tdc operon
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFG
VELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVS
FGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFA
IGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLP
QTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDM
TSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSY
NGCRRRQLIEVG
>SSO_1003 torR, response transcriptional regulator for torA
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLI
LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYV
TKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLE
RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVD
VLIRRLRHKLSADLLVTQHGEGYFLAADVC
>SSO_4422 treR, repressor of treA,B,C
MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSP
SRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES
QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAK
GFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLA
FCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKY
LQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQLIAQVT
GRSEPQQIIIPATLS
>SSO_4543 trpR, regulator for trp operon and aroH; trp aporepressor
MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREA
LGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWL
EEVLLKSD
>SSO_3765 ttk, putative transcriptional regulator
MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQRITTAK
LAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTA
RLRLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQL
RQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDF
DARWPLIAAQLQ
>SSO_1815 tyrR, transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport
MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFES
FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS
KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV
VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV
SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA
SPRAGKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI
GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICVTQKNLVELVQKG
MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVQRPKLA
ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK
LREYGLSQKKNEE
>SSO_3623 uhpA, response regulator, positive activator of uhpT transcription (sensor, uhpB)
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQV
CICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLS
KRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLA
QGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW
>SSO_1542 uidR, repressor for uid operon
MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYH
HFISKEALIQAIILQDQERALARFREPIKGIHFVDYMVESIVSLTHEAFG
QRALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDI
NTSMTSRLLLDLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS
>SSO_1174 umuD, UmuD
MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSA
TYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQ
LRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR
>SSO_1204 uvrY, putative 2-component transcriptional regulator
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDV
VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAG
YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASL
SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL
THLAIRHGLCNAETLSSQ
>SSO_4479 uxuR, regulator for uxu operon
MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVV
REALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQ
ARQLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQ
FHLAIAEATHNSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGD
HKQILAALIKKDARAAKLAMWRHLENVKQRLLEFSNVDDIYFDGYLFDSW
PLDKVDA
>SSO_4364 vacB, putative enzyme
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPAS
RDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVK
GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR
REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA
RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI
WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEV
LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV
WHILQGDQDLREQYVPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF
IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH
DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ
TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC
DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ
VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK
TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARK
AKKPSAKTQKIAAATKAKRAAKKKVAE
>SSO_P085 virB, VirB
MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTFVNQKTN
VRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIY
AGADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMS
YKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYY
KGLEKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN
PSLKVDSLFISKDKRTYIKRKENKTNRTLIFTLSKINKTVQREIDEAIRD
IISRHLSSS
>SSO_P041 virF, VirF
MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQIAFIER
NIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRG
LNKKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTS
ISIASSLSFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKL
TFQQILLDIRMHHAAKLLLNSQSYINDVSRLIGISSPSYFIRKFNEYYGI
TPKKFYLYHKKF
>SSO_3777 waaP, lipopolysaccharide core biosynthesis protein
MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSYFLK
WHRGTTLKEIIKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGEK
GINPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMV
RDMHAVGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRR
WRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFVAPLKDILKQEQGLLSQAE
AKATKIRERTIRKSL
>SSO_0175 yaeG, conserved hypothetical protein
MHNGGLMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGL
TGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEE
NTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTT
PERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQL
RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVL
LDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKAL
FIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER
>SSO_0202 yaeO, conserved hypothetical protein
MSMNDAYQPINCDDYDNLELTCQHHLMLTLELKDGEKLQAKASDLVSRKN
VEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES
>SSO_0222 yafC, putative transcriptional regulator LYSR-type
MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLL
NRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAA
TPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLT
DSSLRARPLFNSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLN
TWPIACSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMIDKEIAR
GELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPGGA
VREA
>SSO_0275 yafP, conserved hypothetical protein
MNNIQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWK
EKLAKSQVWVAVINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPF
IKSESELTVDASITAKPFFERYGFQTVKQQHVECRGAWFTNFYMQYKPQH
>SSO_0350 yaiV, conserved hypothetical protein
MPVKDLTGITAKDAQMLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIF
SSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMKNDIPYK
LISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAWQNRILELRDVQLIG
HNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEVLAALR
KGGYIEMNKGKLVAINRLPSEY
>SSO_0371 yajF, possible NAGC-like transcriptional regulator
MNHSMIISTALSLNLAGMITNCRRPCIANPVVRLYAIDIEKNKESTVRIG
IDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQAT
GQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLAN
DANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRAHIGGNGTAGE
WGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFATDYRRLSGHA
LKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGM
SNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>SSO_0390 ybaD, conserved hypothetical protein
MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPR
VVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGE
REVPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED
>SSO_0435 ybaO, putative LRP-like transcriptional regulator
MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQDCTLSL
QALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIK
TQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFY
KRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
>SSO_0476 ybbI, putative transcriptional regulator
MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLL
RQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS
MRDQLLALANACPGDDSADCPIIENLSGCCHHRAG
>SSO_1992 ybcM, putative ARAC-type regulatory protein
MLAKDRTNLKIEEIRMHKHHEIHRVKPLMPASCRIRQGKKVINWETHSLT
VDNNQIILFPCGYEFYIANYPEAGLYLAEMLYYPIDLIEKFQNLYAITDQ
IRNTTGFCLPQNSELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHH
VNCLLLSDSKQSLISRCYNLMLSEPGTKWTANKVARYLYISVSTLHRRLA
SEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHN
RFKITPRELRKASRE
>SSO_0553 ybdM, conserved hypothetical protein
MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFREEPVDCV
LWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAME
IVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGR
HQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADR
QYSRAWTVK
>SSO_0583 ybeF, putative transcriptional regulator LYSR-type
MLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE
SILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNP
PISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLS
LEDDRETIDNAAHVLLLPEGQNFSGLRQRVQEMFPDRQINFTSYNILTIA
ALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSL
RDPILHGVIDVIRNAF
>SSO_0742 ybhD, putative transcriptional regulator LYSR-type
MQLKFLTASHPKSSLPFSGVIMKHELSSMKAFVILAESSSFNNAAKLLNI
TQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDE
TLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQ
GTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAK
KQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTS
LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVL
SPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>SSO_0775 ybiH, putative transcriptional regulator
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIA
AITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIR
ELLLRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHS
HLTRLIAAWTGSDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFD
EEKTELINQTVTCHIDLILQGLSQRSL
>SSO_1033 ycdC, putative tet operon regulator
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGV
SKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRL
KLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVK
SGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVEN
VQRIIIEGIRPR
>SSO_1131 ycfQ, conserved hypothetical protein
MGSGLVNGGDYFYNNLSFTVTRFNGIMATDSTQCVKKSRGRPKVFDRDAA
LDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRY
IDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCT
TLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFL
NCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK
>SSO_1139 ycfX, putative NAGC-like transcriptional regulator
MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEA
DQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDV
RLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSY
ITGEFGHMRLPVDALTMMGLDFPLRRCGCGQIGCIENYLSGRGFAWLWQH
YYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNILTIVDSDLVV
IGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLH
LTD
>SSO_1157 ycgE, putative transcriptional regulator
MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDEEDIQRI
EEIKRWISNGVPVGKVKALLETTSQDTEDDWNRLQEEMMSILRMANPAKL
RARIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYA
AASLFEMRRKPGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIE
SPHPELFPTQTLIVWTGMAPTRRQNELLQHWGEQGYKVIFHAP
>SSO_1841 ycjC, conserved hypothetical protein
MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAIS
TLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHN
GNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHL
VAGQSYAINTGIPHSFSNTSAGICRIISAHTPTTF
>SSO_1819 ycjW, putative LACI-type transcriptional regulator
MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNK
LARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVIL
QTSHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVI
GKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVD
RVNGYKQSLAAHNIAVRDELIVDGGYTHETALQAARELLSQSPLPEAVFA
TDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQ
ELGQQSCELLFRLISGKPSPQNITVATHMTLK
>SSO_1805 ycjZ, putative transcriptional regulator LYSR-type
MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRL
LTRTTRSVVPTEAGEHLLSVLGPMLHDIDSALASLSELQNRPSGTIRITT
VEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGE
MDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTS
GTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVE
RAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV
>SSO_1792 ydaK, putative transcriptional regulator LYSR-type
MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQ
LFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIG
MGASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTIN
TYYQGPYDHEFTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTP
HGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKSDFLSILPEEMGC
DPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGYL
QS
>SSO_1704 ydcN, conserved hypothetical protein
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVA
TLWKIATGLNVPFSTFISPPQSAMPSVYDPQQQAMVITSLFPYDPQLCFE
HFSIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVR
FAADVTHIYRNGGEQTVHFHSLIHYPRS
>SSO_1588 ydfH, conserved hypothetical protein
MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQ
PVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARR
AASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQ
LAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVE
RAMTQHLQEISESVRQIRQENSDWFSEE
>SSO_1497 ydhB, putative transcriptional regulator LYSR-type
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFE
RRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDN
IVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATR
AIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVRED
TSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLN
EGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLR
EPEETPATGD
>SSO_1371 yeaM, putative ARAC-type regulatory protein
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGA
ITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPT
TCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQL
HLPVSSHPKIRTMVEMMAKGPVEWGSLGQWAGFFAMSERNLARLIVKETG
LSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQ
TPGRYIAGLTTVSPQSAKPDPRQ
>SSO_1362 yeaT, putative transcriptional regulator LYSR-type
MKHKTRIMNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALL
EQTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVP
QGMLRIISSFGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVD
LDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLTDLSALPCL
VIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR
SWWDVSENIASGHLVQVLPEYYQPANVWAVYVSRLATSAKVRITIEFLRQ
YFAEHYPNFSLEHA
>SSO_1295 yebK, conserved hypothetical protein
MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEANVSEPT
VNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFE
SAMATLDHVRHSLDKSAINRTVDLLTQAKKIAFFGLGSSAAVAHDAMNKF
FRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARE
NDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVL
ATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR
>SSO_2027 yedW, putative 2-component transcriptional regulator
MVRRLRFSGPKTSIICTPMTSLKTSIKTITYLSDTGCLEIQGASLVSITY
DLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD
DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSG
ANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRNN
ISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIR
RLRAKVDDPFPEKLIATIRGMGYSFVAVKK
>SSO_2085 yeeY, putative transcriptional regulator LYSR-type
MHCKGACMKQLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLES
DLNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWEN
ELVIGVDDTFPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRA
DIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLAQEEEPLNRRIIKR
YRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPR
YLVQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWWRDEILANS
AIAGVYAKSDDGKSAI
>SSO_2149 yegW, putative transcriptional regulator
MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGE
RDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARG
FSQQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVD
EEAVSIEESWVPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPD
AEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSDLYVFVCEE
>SSO_2171 yehT, conserved hypothetical protein
MEGRGMIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHK
LRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHA
FDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRI
YLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQY
LVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>SSO_2183 yehV, putative transcriptional regulator
MLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQ
NGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRL
QCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRL
WLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQL
TSWQEQGHDIFPLGI
>SSO_2213 yeiE, putative transcriptional regulator LYSR-type
MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLF
DRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIG
NYILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHS
TEIISEPWLEDELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREI
VDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRRVIEDQLQAGT
LSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR
>SSO_2240 yejH, putative ATP-dependent helicase
MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG
RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV
ARNIDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRSDEKALFRDCIYELPLRYMIKHSYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAE
KRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR
FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDED
GADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALL
RPPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>SSO_2490 yfeD, conserved hypothetical protein
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLIL
VDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNM
TDIEQGKVAQFLSREGIRNFLARLDIDESA
>SSO_2526 yfeG, putative ARAC-type regulatory protein
MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAW
QQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGI
PATRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVIT
RQANFLHNPDRVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENL
HQPAVRKVLGDNLLMAMGAMLEDAQPMVTAESISHQSYRRLLSRAREYVL
ENMSELVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE
LISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMREWG
>SSO_2497 yfeR, putative transcriptional regulator LYSR-type
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLL
DRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAAS
QTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFCIVID
PGPVGDLQCEAILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYAS
GSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISILPALALPLP
EGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQGNALMAGR
EGAPLYQI
>SSO_2516 yfeT, conserved hypothetical protein
MLYLTKIRNAESEFTENEQKIADFLRANVSELKSVSSRKMAKQLGISQSS
IVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEV
IARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVG
RDLSFKLMKIGYRVAYEADTHVQATVSQALKKGDVQIAISYSGSKKEIVL
CAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTA
QNSVTDLLFVGLVQLNDVESLKMIQRSSELTQRLK
>SSO_2644 yfhH, conserved hypothetical protein
MEYKIHSRVSHIACCRHYFIARKDMNGLLRIRQRYQGLAQSDKKLADYLL
LQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALAS
QPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECV
TMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQA
SSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASH
CLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
LVKKLV
>SSO_2703 yfiE, putative transcriptional regulator LYSR-type
MFLYSRFDIFDRFGVMDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFH
IQQLEQEFSVQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKE
SDPDGELRVVSGETLLSYRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDAL
LNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIVDVDFTEPGRHNA
CSFIINEPQCVFRQIFESTLRQRRITVENTIELISIESIKRCVAANIGVS
YLPRFAVAKELECGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQC
VEESFVAG
>SSO_2853 ygaA, putative 2-component transcriptional regulator
MSSQNDYQSNGRYDNIYSQIDSEAKMSFSVDVLANIAIELQRGIGHQDRF
QRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPR
LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLI
GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMMPGD
ATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA
KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF
EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLA
ATNRDLREEVMAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ
CRLRLGLSRVVLSAGARNLLQHYRFPGNVRELEHAIHRAVVLARATRNGD
EVILEAQHFAFPEVTLPPPEAAAVPVVKQNLREATEAFQRETIRQALAQN
HHNWAACARMLETDVANLHRLAKRLGMKD
>SSO_2808 ygaE, putative transcriptional regulator
MIRSHTMTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIA
RGGDEWEADVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGS
HYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARD
TARASELMRQHLLTPIPIIQQAMAGN
>SSO_2883 ygbI, putative DEOR-type transcriptional regulator
MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDL
QKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLV
QPGSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIH
TGGAVCRENRSCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVT
VKRAIASASRQRVLVCDATKYGQVATWLALPLSEFDQIITDDGLPESASR
ALAKQDLSLLVAKNE
>SSO_2921 ygcP, putative anti-terminator regulatory protein
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKI
KNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAE
GFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGGMPKVLGWVTEKIR
QPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>SSO_3020 ygeV, putative transcriptional regulator
MELATTQSVLMQIQPTIQRFARMLASVLQFEVEIVDENLCRVAGTGAYGK
FLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLG
TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLE
DQGPGDNISKIFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNI
IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA
FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG
ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFT
GASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS
SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED
IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL
VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEE
MEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT
>SSO_3123 ygjM, conserved hypothetical protein
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLL
DLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPE
IGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID
>SSO_3363 yhcI, putative NAGC-like transcriptional regulator
MVQHSDEKGGAMTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPE
ALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLV
KTLEQLTNLPTIAINDAQAAAWAEYQALEGDVTEMVFITVSTGVGGGVVS
GGKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQG
ELMGADARTIFTRAGQGDEQAQQLIHRSAHVLARLIADIKATTDCQCVVV
GGSVGLAEGYLALVETYLAQEPAVFHVDLLAAHYRHDAGLLGAALLAQGE
KL
>SSO_3367 yhcK, putative FADA-type transcriptional regulator
MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFG
EGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSA
DTIIGEFSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDL
LAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLI
AARPTVADQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLNSVSA
TWHAFGQTTNKKK
>SSO_3381 yhcO, conserved hypothetical protein
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPLP
LEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH
>SSO_3433 yhdM, putative transcriptional regulator
MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKF
IRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAEL
QSMQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC
>SSO_3506 yhfR, putative transcriptional regulator
MLLLAGKRPYNPCNSFFISGSIMSATDRYSHQLLYATVRQRLLDDIAQGV
YQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQ
KVENALLTVSGFTDFGVSQGKATKEKVIEQERVSAAPFCEKLNIPGNSEV
FHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTR
VVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELF
CRANRITLTIDNKRH
>SSO_3538 yhgF, conserved hypothetical protein
MPFIARYRKEITGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKL
TDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWSD
PSHTPEVAAAQYIDADKGVADTKAALDGARYILMERFAEDAALLAKVRDY
LWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEG
VLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTW
RIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLD
PGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKVAMTVAALCEKHNVELV
AIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEF
PDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKL
DAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFKNR
QQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAAT
QQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEF
KTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL
SNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRG
GGNERPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR
>SSO_3719 yhhG, conserved hypothetical protein
MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGT
QGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAV
LKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED
>SSO_3683 yhhY, conserved hypothetical protein
MSNTFCKKNAFDSHLKVNDVERDIYPKEDKGMSEIVIRHAETRDYEAIRQ
IHAQPEVYCNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTID
VQQHPRRSHVADFGICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELT
VFVDNAPAIKVYKKYGFEIEGTGKKYALRVMLPTY
>SSO_3574 yhiE, conserved hypothetical protein
MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHN
HILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLE
ITYGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQ
KFNIMYKLKLRRMSDIVTLGITSYF
>SSO_3571 yhiW, putative ARAC-type regulatory protein
MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFCSPDTRR
LDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE
SGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIA
KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ
IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS
>SSO_3570 yhiX, putative ARAC-type regulatory protein
MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRVDKCVEN
FVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQL
SQNKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTV
INNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQ
LIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQGLPNR
DSAASIVAQGNFYGTDRSAEGIRL
>SSO_3871 yhjB, putative regulator
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALV
MLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAI
VPRDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREIL
TMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS
>SSO_3870 yhjC, putative transcriptional regulator LYSR-type
MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFF
ALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNL
SELDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELS
SHNRPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFG
YPQSPDDLTSHAMVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSE
NYLAAGLAGLGIIQIPRIAVREALRAGQLIEVLPGYRAEPLSLSLVYPQR
RELSRRVNLFMQWLAGVMKEYLD
>SSO_3840 yiaC, conserved hypothetical protein
MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAYLANAQN
WVWEEDGKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRYPHL
MLEVYQKNQPAIDFYRAQGFHIVDCAWQDETQLPTWIMSWPVVQTL
>SSO_3833 yiaG, conserved hypothetical protein
MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKID
DFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME
>SSO_3635 yidP, putative transcriptional regulator
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLV
AWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEI
MPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSL
QHLEGSKFEYIEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRI
TSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPEKS
>SSO_3555 yidZ, putative transcriptional regulator LYSR-type
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWF
DDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFE
LAAESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGF
SGRESHPRSRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTF
LRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQSLFMAAQPDN
LLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSH
NPKIVWLRETIKNLYASMA
>SSO_3925 yieP, conserved hypothetical protein
MSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEE
NFHQVIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKENF
RRERWIEVDMAWHEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIK
LNLHQAIVDAIVQSDGDAAFKACQALLRSPDK
>SSO_3932 yifDA, Transcription regulator
MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTR
HRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLW
ECMLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEA
PKMDEFSSQLLGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIG
ADEVPILTTSSAELAQQQIAMLNGCTWLPVSWARKKGGLHTVVDSTTLSR
PLYAIWLQNSDKNALIRDLLKINVLDEVY
>SSO_4045 yihW, putative DEOR-type transcriptional regulator
MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRDIRKLSE
QGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTV
FITIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLR
AHNGGIIGPGAVDFIEGFRADYLITSIGAIEHDGTLLEFDVNEALVARTM
IKHARNTLLVADHTKFAASAAVSIGNARNVRAFFTDAPPPNSFCQLLSEE
NVELVVAEQEVS
>SSO_4057 yiiD, putative acetyltransferase
MSLLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGS
ERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKG
LGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFINQGEITTPTTT
PIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTG
QKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTII
LADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDE
TPGAVFEGTYIVLPAKPFGPYEEGGNEEE
>SSO_4136 yijC, conserved hypothetical protein
MFILWYSASSTFGKDSDIVMGIRAQQKEKTRRSLVEAAFSQLSAERSFAS
LSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRI
AKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHF
IAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDVGVEQRRQLEE
RLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE
>SSO_4127 yijO, putative ARAC-type regulatory protein
MYHGVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGE
FVDTGAGATLVPGDVLYVAAGGWNFPQWKTPATTFSVLFGKQQLGFSVVQ
WDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLL
SHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPN
YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSN
YFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
>SSO_4184 yjaB, conserved hypothetical protein
MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRAELEVLVRSFLPEA
PLWVAVNERDQPVGFMLLSGQHMDALFIDPDVCGCGVGRMLVEHALSMAP
ELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVEE
>SSO_4168 yjaE, putative transcriptional regulator
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKESYMRLN
EKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANT
QQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLD
AARVKHPA
>SSO_4318 yjdC, conserved hypothetical protein
MGKTEENSVQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFW
PDKEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKN
NRYPGCLFIAACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPA
MVAKQMELVLEGCLSRMLVNRSQADVDTAHRLAEDILRFARCRQGGALT
>SSO_4301 yjdG, putative 2-component transcriptional regulator
MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPI
DLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGV
VDYLIKPFQASRFEEALTDWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ
DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLI
WLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ
>SSO_4363 yjeB, conserved hypothetical protein
MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLS
RAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITP
ACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE
>SSO_4373 yjfQ, putative DEOR-type transcriptional regulator
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDERGKLK
KVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVIN
CGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQS
ITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGK
LVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILR
V
>SSO_4431 yjgJ, conserved hypothetical protein
MVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARRHPQSAQCVTDFMSTV
MSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>SSO_4503 yjjM, conserved hypothetical protein
MYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSE
QNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRY
NLIHSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWL
QAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEII
SVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLN
SAKQSMIRSINENTRYAH
>SSO_0319 ykgD, putative ARAC-type regulatory protein
MDALSRLLMLNAPQGTIDKNCVLGSDWQLQHGAGELSVIRWHALTQGAAK
LEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY
FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA
TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLA
SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSREMLPVVVIAE
SVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
>SSO_0522 ylcA, putative 2-component transcriptional regulator
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIIL
DIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLV
KPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRIT
LTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRG
KIDNDFEPKLIQTVRGVGYMLEVPDGQ
>SSO_1602 yneJ, putative transcriptional regulator LYSR-type
MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIR
ENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTA
AVRIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINH
TAIDGIPVYREELMIVTPQGHAPVIRASQVNGSNIYAFRTNCSYRRHFES
WFHADGAAPGTIHEMESYHGMLACVVAGAGIALIPRSMLESMPGHHQVEA
WPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVSDSAKQSYQ
>SSO_1569 ynfL, putative transcriptional regulator LYSR-type
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLL
ARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFT
SSAPFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLR
NTALPETLEHAVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPH
VGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFK
RVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPASRNFRIHLLNALR
>SSO_1353 yoaA, putative enzyme
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTG
KTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL
KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVS
VAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHL
FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK
EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS
VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGCAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDLLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
>SSO_3006 yqeH, conserved hypothetical protein
MTSSITNEIMQLYTDREVLNMGLCSRYKSLTCNSCSMHCQIMPEESPRLQ
YCANSCFCMWPEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLF
LEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNTAISAVIYNDDGLDV
ANEKIRQLFIGRYLSFTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI
RSIYAYKQRIEKRMGGKINELFIRSHSVQH
>SSO_3102 yqgE, conserved hypothetical protein
MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFRRSVVYI
CEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGG
PLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLV
ALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVD
ILTMPGVAGHA
>SSO_3154 yqhC, putative ARAC-type regulatory protein
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCL
FLQSAGEMLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSL
SELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANE
YLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPS
MAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTG
PCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAF
HHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVDYESASQF
SREFKRYFGVTPGEDAARMRAMQGN
>SSO_3209 yqjI, conserved hypothetical protein
MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHSRG
GGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVI
YPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIK
ARCVGAALRQNPQMKRALDNFKAVLDLRVNQSDITDAQIKKIIAVIDHAA
FDITQLD
>SSO_3338 yrbA, conserved hypothetical protein
MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKK
QQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF
>SSO_4390 ytfA, conserved hypothetical protein
MHSENQSKGVHYAKSLRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQ
VNINIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLV
DPSSTAHE
>SSO_4396 ytfH, conserved hypothetical protein
MGSLHRFVLCLNTLTPKLTFSKYVQKGKYEMSQVSLSQQLKEGNLFAEQC
PSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQAL
EQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
RDERAA