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2024-05-26 00:10:12

Gene list

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COG category: Transcription
Organism: Shewanella oneidensis MR-1, MR-1

Number of genes found: 288

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Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
SO0026 transcriptional regulator, ArsR familySubName: Full=Transcriptional regulator ArsR family; chromosome CDS31147 309 - 0.414239
SO0045 Rrf2 family proteinSubName: Full=Nitrite-sensitive transcriptional repressor NsrR; chromosome CDS52004 456 + 0.425439
SO0072 transcriptional regulator, GntR familySubName: Full=Transcriptional repressor of ABC-type efflux system GntR family; chromosome CDS84353 372 + 0.543011
SO0082 transcriptional regulator, MerR familySubName: Full=Transcriptional activator of benzoate metabolism; chromosome CDS94160 357 + 0.473389
SO0159 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS165737 357 + 0.431373
SO0183 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS187837 483 - 0.412008
SO0193 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of phospholipid synthesis TetR family; chromosome CDS202414 612 + 0.439542
SO0198 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of fatty acid biosynthesis FabR; chromosome CDS208491 615 + 0.504065
SO0295 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS301109 885 - 0.466667
SO0317 transcriptional regulator, AraC/XylS familySubName: Full=Transcriptional regulator AraC family; chromosome CDS323850 759 + 0.492754
SO0339 conserved hypothetical proteinSubName: Full=Modulator of rho-dependent transcriptional termination RofA; chromosome CDS339829 273 - 0.483516
SO0346 transcriptional regulator. GntR family chromosome CDS352532 717 - 0.504881
SO0351 DNA-binding response regulator, LuxR familySubName: Full=Two component signal transduction system response regulator LuxR family; chromosome CDS358578 597 - 0.519263
SO0369 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS382765 888 - 0.47973
SO0386 DNA-binding protein, putativeSubName: Full=Excisionase/response regulator inhibitor-like protein; chromosome CDS400540 249 - 0.445783
SO0390 hypothetical protein chromosome CDS403879 300 + 0.43
SO0402 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS415596 930 + 0.491398
SO0407 ATP-dependent RNA helicase, DEAD box familyRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS423730 1320 + 0.456061
SO0443 transcriptional regulator, MerR familySubName: Full=Zinc and cadmium (II) responsive transcriptional activator ZntR; chromosome CDS471758 492 + 0.530488
SO0490 transcriptional regulatorSubName: Full=Transmembrane transcriptional regulator CadC family; chromosome CDS512737 1284 + 0.466511
SO0497 hypothetical proteinSubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; chromosome CDS521627 1962 + 0.476555
SO0502 transcriptional regulator, ArsR familySubName: Full=Transcriptional regulator ArsR family; chromosome CDS528995 336 - 0.431548
SO0523 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS546161 933 - 0.460879
SO0579 serine/threonine protein kinase, putativeSubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; chromosome CDS605524 1809 - 0.466003
SO0622 DNA-binding response regulatorSubName: Full=Two component signal transduction system response regulator; chromosome CDS649660 675 - 0.463704
SO0636 acetyltransferase, GNAT familySubName: Full=Toxin-antitoxin system toxin GNAT family; chromosome CDS663421 495 - 0.458586
SO0641 prophage MuSo1, transcriptional regulator, Cro/CI familySubName: Full=Mu phage bifunctional transcriptional repressor / serine protease Cro/CI family; chromosome CDS669361 723 - 0.466113
SO0701 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS718091 990 + 0.484848
SO0705 transcriptional regulator, Cro/CI family chromosome CDS723011 294 + 0.442177
SO0721 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS737575 252 - 0.436508
SO0733 cold shock domain family proteinSubName: Full=Cold-shock DNA-binding domain protein; chromosome CDS748237 612 - 0.48366
SO0734 conserved hypothetical proteinSubName: Full=Transcriptional repressor PadR family; chromosome CDS749154 357 + 0.507003
SO0766 transcriptional regulator, AraC/XylS family chromosome CDS779788 822 - 0.459854
SO0767 transcriptional regulator, LysR family chromosome CDS781403 417 - 0.529976
SO0790 hypothetical protein chromosome CDS803915 117 + 0.393162
SO0791 transcriptional regulator, LysR family chromosome CDS804249 864 + 0.454861
SO0839 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS855541 912 - 0.475877
SO0843 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS865510 882 - 0.475057
SO0860 response regulator chromosome CDS888057 1020 + 0.471569
SO0864 transcriptional regulator, LuxR family chromosome CDS892542 768 + 0.429688
SO0877 acetyltransferase, GNAT family chromosome CDS907093 510 + 0.482353
SO0896 hypothetical protein chromosome CDS924554 216 - 0.430556
SO0916 transcriptional regulator, MarR familySubName: Full=Bifunctional MarR family transcriptional regulator/acteyltransferase GNAT family; chromosome CDS944481 930 - 0.463441
SO0920 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS950736 444 - 0.463964
SO0936 transcriptional regulatorSubName: Full=Transmembrane transcriptional regulator; chromosome CDS968070 747 + 0.43909
SO0940 transcriptional regulator-related proteinSubName: Full=Transmembrane transcriptional regulator; chromosome CDS971225 744 + 0.456989
SO0954 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS990485 420 + 0.459524
SO0977 transcriptional regulator, MarR familySubName: Full=Hydroperoxide resistance transcriptional regulator OhrR; chromosome CDS1007685 498 + 0.447791
SO0989 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS1021392 891 + 0.427609
SO0997 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS1028752 933 + 0.459807
SO1046 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS1084167 891 - 0.499439
SO1092 transcriptional regulator, AraC/XylS familySubName: Full=Transcriptional regulator AraC family; chromosome CDS1130671 780 + 0.462821
SO1094 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1133432 387 - 0.385013
SO1136 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS1177348 1344 + 0.514137
SO1259 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS1307826 906 + 0.456954
SO1265 transcriptional regulator, putativeSubName: Full=Putrescine degradation gene regulator PuuR; chromosome CDS1313430 549 + 0.448087
SO1311 transcriptional regulator chromosome CDS1366382 789 + 0.461343
SO1328 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator of oxidative stress OxyR; chromosome CDS1385079 915 + 0.451366
SO1383 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS1439566 1302 - 0.496928
SO1387 HD domain protein chromosome CDS1443222 1269 + 0.44602
SO1389 ROK family proteinSubName: Full=ROK family protein; chromosome CDS1446733 795 + 0.45283
SO1393 transcriptional regulator, TetR family chromosome CDS1450446 618 + 0.488673
SO1408 helicase, putativeSubName: Full=Helicase; chromosome CDS1462811 2964 - 0.474022
SO1415 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of flavocytochrome c TetR family; chromosome CDS1472049 783 + 0.40613
SO1422 transcriptional regulator, LysR familySubName: Full=Fe(III)-induced transcriptional regulator IfcR; chromosome CDS1481489 954 + 0.368973
SO1445 transcriptional regulator, CopG familySubName: Full=Transcriptional regulator CopG family; chromosome CDS1507802 309 - 0.488673
SO1461 protein kinase, putativeSubName: Full=Serine/threonine protein kinase; chromosome CDS1519669 4131 + 0.455338
SO1469 transcriptional regulator, Cro/CI familySubName: Full=Transcriptional regulator Cro/CI family; chromosome CDS1534139 255 - 0.415686
SO1501 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS1573651 1371 + 0.493071
SO1533 glycine cleavage system transcriptional activator, putativeSubName: Full=Transcriptional activator of glycine metabolism GcvA; chromosome CDS1608405 912 + 0.486842
SO1566 acetyltransferase, GNAT family chromosome CDS1643613 519 + 0.510597
SO1578 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of glutathione detoxification; chromosome CDS1655033 612 + 0.454248
SO1582 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator MarR family; chromosome CDS1659719 540 + 0.507407
SO1607 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS1691569 945 + 0.468783
SO1614 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS1696347 639 + 0.447574
SO1648 cold shock domain family protein chromosome CDS1734435 246 - 0.406504
SO1651 Snf2 family protein chromosome CDS1737303 3213 + 0.472767
SO1656 ROK family proteinSubName: Full=D-hexose 6-phosphotransferase HexA; EC=2.7.1.1; chromosome CDS1743565 921 + 0.489685
SO1661 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS1748799 987 - 0.427558
SO1687 transcriptional regulator, MerR familySubName: Full=Copper-responsive transcriptional regulator of copper exporter CueR; chromosome CDS1773703 390 - 0.45641
SO1703 transcriptional regulator, TetR family chromosome CDS1793412 321 + 0.52648
SO1712 transcriptional regulator, putativeSubName: Full=Transcriptional regulator; chromosome CDS1800265 1524 + 0.419291
SO1732 cold shock domain family proteinSubName: Full=Cold shock domain family protein; chromosome CDS1815974 675 - 0.444444
SO1758 conserved hypothetical proteinSubName: Full=Transcriptional repressor DeoR family; chromosome CDS1839228 693 + 0.483405
SO1762 transcriptional regulator, AraC/XylS familySubName: Full=Transcriptional regulator AltA; chromosome CDS1841189 837 - 0.492234
SO1774 conserved hypothetical proteinSubName: Full=Transcriptional repressor of glycerate utilization SdaR; chromosome CDS1853738 1224 - 0.458333
SO1860 DNA-binding response regulator, LuxR familySubName: Full=Two component signal transduction system response regulator UvrY; chromosome CDS1951805 645 + 0.471318
SO1876 NodD transcription activator-related protein chromosome CDS1972582 684 + 0.387427
SO1883 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS1981490 435 - 0.475862
SO1887 conserved hypothetical proteinSubName: Full=DJ-1/PfpI family protein; chromosome CDS1983349 603 - 0.502488
SO1898 transcriptional regulator, putativeSubName: Full=Transcriptional repressor of branched chain amino acid degradation LiuR; chromosome CDS1996463 405 - 0.496296
SO1907 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2006104 897 - 0.457079
SO1916 transcriptional regulator, LysR familySubName: Full=DMSO-responsive transcriptional activator of efflux pump LysR family; chromosome CDS2016443 882 - 0.481859
SO1965 transcriptional regulator, LysR familySubName: Full=Homogentisate-responsive transcriptional repressor of homogenetisate degradation HmgR; chromosome CDS2070050 915 + 0.471038
SO1986 RNA polymerase sigma-70 factor, ECF subfamily chromosome CDS2089099 669 - 0.436472
SO2046 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator MarR family; chromosome CDS2144419 462 + 0.484848
SO2053 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2152753 876 - 0.481735
SO2081 ATP-dependent helicase, DinG familySubName: Full=ATP-dependent helicase DinG family; chromosome CDS2176362 1902 + 0.489485
SO2104 DNA-binding response regulator YgiX, putativeSubName: Full=AI-3-responsive two component signal transduction system response regulator QseB; chromosome CDS2201569 660 + 0.459091
SO2193 DNA-binding response regulatorSubName: Full=Two component signal transduction system controlling sortase system response regulator; chromosome CDS2305630 693 - 0.499278
SO2202 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator HdfR; chromosome CDS2316537 861 + 0.472706
SO2224 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS2341032 459 + 0.496732
SO2244 transcriptional regulator, LacI family chromosome CDS2359135 1056 + 0.467803
SO2263 Rrf2 family proteinSubName: Full=Transcriptional repressor of iron-sulfur cluster assembly genes IscR; chromosome CDS2378411 462 + 0.454545
SO2282 transcriptional regulator, GntR familySubName: Full=Bifunctional transcriptional repressor of amino acid efflux GntR family / aminotransferase; chromosome CDS2395756 1359 - 0.463576
SO2366 response regulatorSubName: Full=Two component signal transduction system response regulator with DUF3369 and HD domains; chromosome CDS2472307 1578 - 0.413815
SO2374 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator YdhB; chromosome CDS2479128 903 + 0.466224
SO2409 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2513482 921 - 0.45494
SO2426 DNA-binding response regulator chromosome CDS2533900 714 - 0.436975
SO2438 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2550396 909 + 0.474147
SO2455 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator YafC; chromosome CDS2571873 882 - 0.461451
SO2490 transcriptional regulator, RpiR familySubName: Full=2-keto-3-deoxy-6-phosphogluconate-responsive transcriptional regulator of central carbohydrate metabolism HexR; chromosome CDS2612896 855 + 0.447953
SO2493 transcriptional regulator, TetR family chromosome CDS2618065 720 - 0.454167
SO2519 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator AraC family; chromosome CDS2645013 1152 - 0.479167
SO2539 response regulatorSubName: Full=Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain; chromosome CDS2669426 1977 - 0.417299
SO2541 response regulatorSubName: Full=Two component signal transduction system response regulator; chromosome CDS2672082 1326 + 0.435143
SO2561 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2690680 900 - 0.485556
SO2571 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS2701334 1428 + 0.477591
SO2640 transcriptional regulator, MarR family chromosome CDS2775587 465 - 0.430108
SO2648 DNA-binding response regulator, LuxR familySubName: Full=Two component signal transduction system response regulator activating acetyl-CoA synthase LuxR family; chromosome CDS2785216 663 + 0.463047
SO2652 prophage MuSo2, transcriptional regulator, Cro/CI familySubName: Full=Mu phage transcriptional regulator Cro/CI family C; chromosome CDS2788307 747 - 0.432396
SO2653 transcriptional regulator, Ner familySubName: Full=Mu phage transcriptional regulator Ner; chromosome CDS2789206 225 + 0.431111
SO2676 conserved hypothetical proteinSubName: Full=Mu phage uncharacterized protein Gp26; chromosome CDS2800887 291 + 0.487972
SO2725 transcriptional regulator, LuxR familySubName: Full=Transcriptional regulator LuxR family; chromosome CDS2842211 636 - 0.451258
SO2744 helicaseSubName: Full=Helicase; chromosome CDS2864065 1773 + 0.466441
SO2763 conserved hypothetical proteinSubName: Full=Nucleotide-binding protein with a TIR-like domain; chromosome CDS2885665 816 + 0.384804
SO2787 cold shock domain family proteinSubName: Full=Cold shock protein CspA; chromosome CDS2909851 210 - 0.419048
SO2823 response regulatorRecName: Full=Uncharacterized response regulatory protein SO_2823; chromosome CDS2944137 711 + 0.445851
SO2838 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS2955718 1350 + 0.461481
SO2847 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2966142 894 + 0.467562
SO2849 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS2967521 462 - 0.443723
SO2852 transcriptional regulator, GntR familySubName: Full=Transcriptional regulator of proline and 4-hydroxyproline utilization HypR; chromosome CDS2976182 672 + 0.471726
SO2876 hypothetical proteinSubName: Full=Predicted lipoprotein; chromosome CDS2995390 1953 + 0.491551
SO2932 transcriptional regulator, AraC familySubName: Full=Transcriptional regulator AraC family; chromosome CDS3066680 1062 - 0.444444
SO2989 prophage LambdaSo, transcriptional regulator, Cro/CI family chromosome CDS3113304 267 - 0.419476
SO2990 prophage LambdaSo, transcriptional regulator, Cro/CI familySubName: Full=Lambda phage lytic gene repressor CI; chromosome CDS3113660 819 + 0.449328
SO3014 conserved hypothetical proteinSubName: Full=Segregation and condensation protein ScpB; chromosome CDS3126431 597 - 0.462312
SO3059 formate hydrogenlyase transcriptional activator, putativeSubName: Full=Sigma54 specific transcriptional regulator Fis family; chromosome CDS3172709 1527 + 0.465619
SO3096 RNA polymerase sigma-70 factor, ECF subfamilyRecName: Full=RNA polymerase sigma factor; chromosome CDS3221892 564 + 0.478723
SO3125 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS3252401 1284 - 0.482087
SO3169 transcriptional regulator, Cro/CI family chromosome CDS3305360 381 - 0.409449
SO3194 transcriptional activator rfaH, putativeRecName: Full=Transcription antitermination protein RfaH; chromosome CDS3334737 501 - 0.417166
SO3277 transcriptional regulator, TetR family chromosome CDS3417070 567 - 0.458554
SO3297 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS3441525 846 - 0.328605
SO3305 DNA-binding response regulator, LuxR familySubName: Full=Two component signal transduction system response regulator LuxR family; chromosome CDS3454571 621 - 0.37037
SO3318 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS3471164 894 - 0.510067
SO3323 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; EC=2.3.1.-; chromosome CDS3474759 531 - 0.467043
SO3324 acetyltransferase, GNAT family chromosome CDS3475353 612 - 0.421569
SO3328 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS3476985 459 - 0.427015
SO3346 conserved hypothetical proteinRecName: Full=UPF0301 protein SO_3346; chromosome CDS3492032 564 + 0.45922
SO3363 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS3506060 939 - 0.464324
SO3385 transcriptional regulator, MerR familySubName: Full=Transcriptional activator of singlet oxygen protection; chromosome CDS3523518 1038 - 0.449904
SO3388 ATP-dependent RNA helicase, DEAD box familySubName: Full=ATP-dependent RNA helicase DEAD box family; EC=3.6.4.13; chromosome CDS3526441 1230 - 0.470732
SO3393 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of putative xenobiotic reductase TetR family; chromosome CDS3534653 582 + 0.443299
SO3460 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator of L-lactate utilization LldR; chromosome CDS3605715 900 - 0.447778
SO3470 conserved hypothetical protein TIGR00244RecName: Full=Transcriptional repressor NrdR; chromosome CDS3615391 450 - 0.502222
SO3473 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS3619269 924 - 0.492424
SO3488 transcriptional regulator, AraC/XylS familySubName: Full=Transcriptional regulator AraC family; chromosome CDS3635848 768 + 0.466146
SO3494 transcriptional regulator, TetR family chromosome CDS3644704 633 + 0.518167
SO3516 transcriptional regulator, LacI familySubName: Full=Transcriptional repressor of N-acetylglucosamine utilization NagR; chromosome CDS3670145 1017 + 0.418879
SO3551 RNA polymerase sigma-70 factor, ECF subfamilySubName: Full=RNA polymerase sigma-70 factor ECF subfamily; chromosome CDS3707695 603 - 0.472637
SO3584 conserved hypothetical proteinSubName: Full=Superoxide-responsive transcriptional repressor of superoxide stress response AzrR; chromosome CDS3750985 621 - 0.47504
SO3594 transcriptional regulatory protein RstA, putativeSubName: Full=Two component signal transduction system controlling curli production response regulator RstA; chromosome CDS3756694 714 + 0.459384
SO3608 serine/threonine protein kinase chromosome CDS3768974 1116 - 0.370072
SO3627 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of flavocytochrome c TetR family; chromosome CDS3786662 786 + 0.346056
SO3660 sigma-54 dependent transcriptional regulator/sensory box proteinSubName: Full=Sigma54-dependent transcriptional regulator with PAS sensory domain Fis family; chromosome CDS3812853 1467 + 0.475801
SO3684 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of aromatic compound utilization CalR; chromosome CDS3834798 609 + 0.428571
SO3743 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator TetR family; chromosome CDS3888561 480 - 0.447917
SO3765 conserved hypothetical proteinSubName: Full=PspA/IM30 family protein; chromosome CDS3914606 690 + 0.455072
SO3782 hypothetical protein chromosome CDS3934007 945 - 0.491005
SO3783 ATP-dependent RNA helicase, DEAD box familyRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS3935464 1608 + 0.497512
SO3831 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS3980977 414 + 0.454106
SO3840 RNA polymerase sigma-70 factor, ECF subfamilySubName: Full=RNA polymerase sigma-70 factor ECF subfamily; chromosome CDS3989913 534 + 0.456929
SO3867 transcriptional regulator, Cro/CI familySubName: Full=Transcriptional regulator Cro/CI family; chromosome CDS4014236 228 - 0.399123
SO3874 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS4021219 972 + 0.367284
SO3909 conserved hypothetical proteinSubName: Full=Predicted membrane protein; chromosome CDS4056057 201 - 0.452736
SO3949 BolA/YrbA family proteinSubName: Full=Transcriptional regulator BolA family YrbA; chromosome CDS4094712 252 - 0.440476
SO3982 DNA-binding nitrate/nitrite response regulatorSubName: Full=Nitrate/nitrite-responsive two component signal transduction system response regulator NarP; chromosome CDS4119636 630 + 0.450794
SO4003 response regulatorSubName: Full=Metal dependent phosphohydrolase with response regulator receiver modulation; chromosome CDS4143980 1074 + 0.46648
SO4016 conserved hypothetical proteinSubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; chromosome CDS4161663 1344 - 0.474702
SO4020 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator YidZ; chromosome CDS4169519 966 - 0.463768
SO4052 transcriptional regulator, MarR familySubName: Full=Transcriptional regulator SlyA; chromosome CDS4205060 474 - 0.504219
SO4140 transcriptional regulator, LysR family chromosome CDS4296602 822 - 0.482968
SO4154 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS4329024 912 + 0.529605
SO4172 DNA-binding response regulatorSubName: Full=Oxygen-responsive two component signal transduction system controlling redox affected systems response regulator PrrA; chromosome CDS4344666 552 - 0.519928
SO4251 transcriptional regulator, TetR familyRecName: Full=Nucleoid occlusion factor SlmA; chromosome CDS4427793 594 + 0.446128
SO4303 hypothetical proteinSubName: Full=ATPase family protein associated with various cellular activities; chromosome CDS4481686 504 + 0.492063
SO4326 transcriptional regulator, TetR family chromosome CDS4517790 609 + 0.426929
SO4337 transcriptional regulator, AsnC familySubName: Full=Transcriptional regulator AsnC family; chromosome CDS4528777 501 + 0.473054
SO4388 DNA-binding response regulatorSubName: Full=Two component signal transduction system response regulator; chromosome CDS4584567 684 + 0.413743
SO4393 acetyltransferase, GNAT family chromosome CDS4589077 456 + 0.504386
SO4397 conserved hypothetical proteinSubName: Full=Thioesterase domain protein YiiD; chromosome CDS4590988 438 - 0.497717
SO4428 DNA-binding response regulatorSubName: Full=Two component signal transduction system response regulator OmpR family; chromosome CDS4619137 678 - 0.467552
SO4444 capsular synthesis regulator component B, putativeSubName: Full=Two component signal transduction system response regulator of capsule flagella and curli biosynthesis RcsB; chromosome CDS4632035 639 - 0.363067
SO4468 transcriptional regulator, TetR familySubName: Full=Transcriptional repressor of N-ethylmaleimide reductase NemR; chromosome CDS4656754 597 + 0.438861
SO4479 sigma-54 dependent transcriptional regulatorSubName: Full=Sigma54 dependent transcriptional regulator with GAF sensory domain Fis family; chromosome CDS4667254 1851 - 0.507293
SO4487 DNA-binding response regulatorSubName: Full=Two component signal transduction system response regulator with winged helix family DNA binding domain; chromosome CDS4674187 663 + 0.506787
SO4489 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS4676296 465 + 0.470968
SO4524 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS4719235 978 + 0.5
SO4542 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS4739232 891 + 0.405163
SO4556 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS4752399 966 + 0.467909
SO4567 transcriptional regulator, AsnC familySubName: Full=Transcriptional regulator AsnC family; chromosome CDS4763020 432 + 0.451389
SO4571 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS4765360 960 - 0.366667
SO4589 transcriptional regulator, AraC family chromosome CDS4783665 1002 - 0.464072
SO4623 DNA-binding response regulatorSubName: Full=Two component signal transduction system response regulator; chromosome CDS4819048 678 - 0.477876
SO4624 transcriptional regulator, LuxR familySubName: Full=Transcriptional regulator LuxR family; chromosome CDS4819728 747 - 0.419009
SO4629 conserved hypothetical proteinSubName: Full=Transcriptional accessory protein Tex; chromosome CDS4825116 2355 - 0.504883
SO4637 DNA-binding response regulatorSubName: Full=Two component transcriptional regulator Winged helix family; chromosome CDS4834383 669 + 0.45441
SO4647 DNA-binding response regulatorSubName: Full=Two component signal transduction system response regulator OmpR family; chromosome CDS4842876 696 + 0.472701
SO4675 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator TetR family; chromosome CDS4873469 648 - 0.432099
SO4677 conserved hypothetical proteinRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS4875707 753 - 0.50332
SO4705 transcriptional regulator, putative chromosome CDS4907149 1512 - 0.492063
SO4716 acetyltransferase, GNAT familySubName: Full=Acteyltransferase GNAT family; chromosome CDS4919666 468 + 0.452991
SO4742 transcriptional regulator, DeoR familySubName: Full=Glucosamine-6-phosphate sensitive transcriptional repressor of lipopolysaccharide biosyntheis GlmR; chromosome CDS4953274 771 - 0.48249
SO4755 ParB family proteinSubName: Full=Chromosome partitioning protein ParB; chromosome CDS4965317 879 - 0.426621
SOA0002 type II restriction-modification system activator, putativeSubName: Full=Type II restriction-modification system activator; megaplasmid CDS2651 228 + 0.377193
SOA0031 partition protein, ParB family, putativeSubName: Full=ParB-like partition protein; megaplasmid CDS22779 1875 + 0.4832
SOA0060 acetyltransferase, GNAT familySubName: Full=Toxin-antitoxin system toxin GNAT family; megaplasmid CDS49031 528 + 0.409091
SOA0068 conserved hypothetical proteinSubName: Full=Toxin-antitoxin system antidote transcriptional repressor Xre family; megaplasmid CDS55521 288 - 0.458333
SOA0078 conserved hypothetical proteinSubName: Full=Type II toxin-antitoxin system antidote component CC2985 family; megaplasmid CDS61181 243 + 0.432099
SOA0096 partitioning protein BSubName: Full=Plasmid partition protein ParB; megaplasmid CDS74611 1095 + 0.383562
SOA0108 hypothetical proteinSubName: Full=Radical SAM superfamily protein; megaplasmid CDS88762 387 + 0.335917
SOA0132 conserved hypothetical proteinSubName: Full=Transcriptional regulator Winged helix family; megaplasmid CDS116515 459 - 0.285403
SOA0165 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator LysR family; megaplasmid CDS154093 870 + 0.457471
arcA aerobic respiration control protein ArcASubName: Full=Two component signal transduction system controlling aerobic respiration response regulator ArcA; chromosome CDS4126001 717 + 0.461646
argR arginine repressorRecName: Full=Arginine repressor; chromosome CDS782703 471 - 0.447983
arsR arsenical resistence operon repressorSubName: Full=Arsenite-sensing transcriptional repressor ArsR; chromosome CDS553907 345 + 0.478261
asnC regulatory protein AsnCSubName: Full=Asparagine-responsive transcriptional regulator AsnC; chromosome CDS3951642 462 + 0.478355
cobB cobB proteinRecName: Full=NAD-dependent protein deacylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; chromosome CDS2042650 732 + 0.479508
cpxR transcriptional regulatory protein CpxRSubName: Full=Periplasmic stress-responsive two component signal transduction system response regulator CpxR; chromosome CDS4665126 687 + 0.458515
cspD stress response protein CspDSubName: Full=DNA-binding cold shock protein CspD; chromosome CDS2764097 207 + 0.429952
cysB cys regulon transcriptional activatorSubName: Full=Transcriptional activator of cys regulon CysB; chromosome CDS2785966 975 - 0.433846
dbpA ATP-dependent RNA helicase DbpASubName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS924809 1377 + 0.481481
deaD ATP-dependent RNA helicase DeaDRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS4189577 1872 + 0.505876
dinG ATP-dependent helicase DinGSubName: Full=ATP-dependent helicase DinG; EC=3.6.4.12; chromosome CDS1907796 2073 - 0.479981
fadR fatty acid metabolism regulator proteinRecName: Full=Fatty acid metabolism regulator protein; chromosome CDS3007456 723 - 0.448133
fis DNA-binding protein FisRecName: Full=DNA-binding protein Fis; chromosome CDS406898 306 - 0.457516
flgM negative regulator of flagellin synthesis FlgMSubName: Full=Flagellar biosynthesis anti-sigma factor FlgM; chromosome CDS3391687 321 + 0.429907
fliA RNA polymerase sigma-27 factorRecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; chromosome CDS3350155 714 - 0.435574
greA transcription elongation factor GreARecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS1234415 477 + 0.450734
greB transcription elongation factor GreBRecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; chromosome CDS4827600 504 - 0.486111
hepA RNA polymerase-associated protein HepARecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; chromosome CDS594280 2907 - 0.502236
hlyU transcriptional regulator HlyUSubName: Full=Transcriptional activator HlyU; chromosome CDS3691803 297 - 0.383838
hutC histidine utilization repressorSubName: Full=Transcriptional repressor of histidine utilization genes HutC; chromosome CDS103967 708 + 0.539548
hypB hydrogenase accessory protein HypBSubName: Full=Ni2+-binding GTPase involved in regulation of NiFe hydrogenase expression and maturation HypB; EC=3.6.5.-; chromosome CDS2188479 795 - 0.475472
iciA chromosome initiation inhibitorSubName: Full=Arginine/lysine-responsive transcriptional regulator ArgP; chromosome CDS2988995 921 + 0.485342
ilvY transcriptional regulator ilvYSubName: Full=Acetohydroxybutyrate/acetolactate-responsive transcriptional regulator of isoleucine-valine biosynthesis IlvY; chromosome CDS4543417 873 + 0.512028
kdpE transcriptional regulatory protein KdpESubName: Full=Two component signal transduction system controlling the osmosenstive K+ channel response regulator KdpE; chromosome CDS66406 690 - 0.498551
lexA LexA repressorRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS4799182 621 + 0.479871
lrp leucine-responsive regulatory proteinSubName: Full=Leucine-responsive regulatory protein Lrp; chromosome CDS2416266 507 + 0.402367
metJ met repressorRecName: Full=Met repressor; AltName: Full=Met regulon regulatory protein MetJ; chromosome CDS4212626 315 + 0.501587
metR transcriptional activator protein MetRSubName: Full=Transcription regulator of methionine biosynthesis MetR; chromosome CDS830162 906 - 0.487859
mfd transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS2367847 3495 - 0.488984
nhaR transcriptional activator protein NhaRSubName: Full=Transcriptional activator of osmotic stress protection NhaR; chromosome CDS1395632 909 + 0.445545
nusA N utilization substance protein ASubName: Full=N utilization substance protein A NusA; chromosome CDS1246441 1500 + 0.476667
nusB N utilization substance protein BRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS3611302 405 - 0.45679
nusG transcription antitermination protein NusGRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS229122 552 + 0.447464
ompR transcriptional regulatory protein OmpRSubName: Full=Osmolarity-responsive two component signal transduction system response regulator OmpR; chromosome CDS4828759 726 + 0.545455
pdhR pyruvate dehydrogenase complex repressorSubName: Full=Transcriptional repressor of pyruvate metabolism PdhR; chromosome CDS437566 753 + 0.50332
phoB phosphate regulon response regulator PhoB chromosome CDS1634454 720 + 0.491667
phoP transcriptional regulatory protein PhoPSubName: Full=Two component signal transduction system response regulator PhoP; chromosome CDS2049116 675 - 0.445926
pspA phage shock protein ASubName: Full=PspF antagonist PspA; chromosome CDS1897828 684 + 0.444444
pspC phage shock protein CSubName: Full=Phage shock protein C PspC; chromosome CDS1898755 387 + 0.439276
pspF psp operon transcriptional activatorSubName: Full=Sigma 54-dependent transcriptional activator of phage shock response PspF; chromosome CDS1896559 1092 - 0.466117
rbcR rubisco operon transcriptional regulatorSubName: Full=Transcriptional regulator of bicarbonate utilization LysR family; chromosome CDS3904193 993 - 0.500504
recG ATP-dependent DNA helicase RecG chromosome CDS4558251 2067 + 0.517658
relA GTP pyrophosphokinaseSubName: Full=GTP pyrophosphokinase RelA; EC=2.7.6.5; chromosome CDS3598092 2208 - 0.503623
rho transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS421774 1266 - 0.459716
rnc ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1404926 681 + 0.459618
rnk regulator of nucleoside diphosphate kinaseSubName: Full=Regulator of nucleoside diphosphate kinase Rnk; chromosome CDS2040912 408 + 0.485294
rpoA DNA-directed RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS257763 990 + 0.479798
rpoB DNA-directed RNA polymerase, beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS232367 4038 + 0.474492
rpoC DNA-directed RNA polymerase, beta' subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS236488 4218 + 0.48862
rpoD RNA polymerase sigma-70 factorRecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; chromosome CDS1335571 1851 - 0.479741
rpoE RNA polymerase sigma-24 factorSubName: Full=RNA polymerase sigma factor 24 RpoE; chromosome CDS1399196 579 + 0.431779
rpoH RNA polymerase sigma-32 factorRecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; chromosome CDS4778232 858 - 0.447552
rpoN RNA polymerase sigma-54 factorRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS4102103 1476 + 0.470867
rpoS RNA polymerase sigma-38 factorRecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; chromosome CDS3577258 981 - 0.455657
rpoZ DNA-directed RNA polymerase, omega subunitRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS370404 279 - 0.519713
rsd regulator of sigma DSubName: Full=Regulator of sigma D Rsd; chromosome CDS458543 486 - 0.442387
spoT guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolaseSubName: Full=Bifunctional ppGpp phosphohydrolase/GTP diphosphokinase SpoT; EC=2.7.6.5; EC=3.1.7.2; chromosome CDS368255 2106 - 0.51567
srmB ATP-dependent RNA helicase SrmBRecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; chromosome CDS982197 1263 - 0.502771
torR torcad operon transcriptional regulatory protein TorRSubName: Full=TMAO-responsive two component signal transduction system response regulator TorR; chromosome CDS1276228 711 + 0.448664
trpI trpba operon transcriptional activatorSubName: Full=Transcriptional activator of tryptophan biosynthesis TrpI; chromosome CDS551820 885 - 0.477966
trpR trp operon repressorSubName: Full=Transcriptional repressor of aromatic amino acid biosynthesis TrpR; chromosome CDS3559588 276 - 0.40942
tyrR transcriptional regulatory protein TyrRSubName: Full=Sigma54-dependent transcriptional activator of amino acid degradation TyrR; chromosome CDS1754957 1539 + 0.497076
umuD umuD proteinSubName: Full=DNA polymerase V subunit UmuD; EC=3.4.21.-; megaplasmid CDS11335 405 - 0.471605
vacB ribonuclease RRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS4079522 2427 - 0.490317