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# Shigella dysenteriae Sd197, Sd197

>SDY_3656 conserved hypothetical protein
MGITAPTPLTSEHNLADFCCSDHGMNEWLKKKALKNHSSGLSRVYVICIA
NTRQVIGYYCLSTGSIQRNLAPGAMRHNAPESLPVVVLGRLAIDQAWAGK
GLGVALLKDAVYRTMSIAQQVGVRALIVHALDDSVRNFYLKYAFVPSPFQ
SLTLLYPITLE
>SDY_2864 putative transcriptional regulator
MPRYQDIARQLKTAIEQGKLKPGARLPSSRTWSQELGVSRSTVENAYAEL
VAQGWLVRRGQAGTFVSEQIHPQQSAVDVVAFAGESQQPLPFQMGLPALD
LFPRELWARVMGRRLRTQTRFDLALGDVCGEAALREAIVDYLRVSRGIDC
QPEQVFITHGYAASMALILHALAQPGDGMWMEDPGFPLIRPIVTRHGVEI
LPVPVDDNGLDVTSGIQNYPDARFALITPAHQSPLGVALSLARRYQILEW
AERSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPAL
RCAWLLVPVEQISQFRQQASLEPCAVPVLWQNTLADFIREGHFWRHLKKM
RQHYAQRRQWIEQALTQQGFQVVPQKGGIQMVIKLAGNDVTFVHKANAAG
LAVQALSDWRIRSSEDGGLLLSFTNIVSESMARQVAQQLRSALN
>SDY_2559 sucrose operon repressor
MASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLS
ARKMRAQGRKPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINI
FSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYGENIVLANCVAD
DPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFE
QAWRDAGRDLAEVKQFHMATGDDHYTDLASLLNDHFKSGKPDFDVLICGN
DRAAFVAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHDI
IGREAALHIIEGREGGKVTRIPCPLLIRCST
>SDY_4626 conserved hypothetical protein
MLILTIGLPDSKGFLWLANDKNYHMILVIIINERDETMLQRTLGSGWGVL
LPGLLIAGLMYADLSPDQWRIIILMGLVLTPVMLYHKQLRHYVLLPSCLA
LIAGIMLMIMNLKQG
>SDY_2727 conserved hypothetical protein
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLR
KNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQG
GDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRT
RTQDAIDVKLRA
>SDY_1660 putative ARAC-type regulatory protein
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE
IGFNENTIKKYLQCTNIQTVTMPVPAKFLRASNVPTGLLNEMIAYLNSEE
RNHHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHP
WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSV
NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQSHMGMNTGNTMNA
LAILLFANE
>SDY_1975 putative regulator
MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYR
FLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREI
SRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKV
LLAWRDRDEVKQILEGVEYKRSTERTITNTEALLPVLDQVREQGYGEDNE
EQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAAR
KISAQMGYHDYPF
>SDY_2446 putative regulator
MRSHEGKSLSLYRSGIGKCLLAWQPATVQQSIIEGLVWEQATPTTITHPQ
QLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAISVVGTRL
QINEEYRDYLAGKAIACARDISRLLGWKSPFDLQAS
>SDY_4646 conserved hypothetical protein
MIDLENQEREIINLMLSQRISWLAAVRIRHKLSLAEVSKMLGISINSLKQ
IEKTERFSSNIKSKMAEIYGCPPELLICPSWMTAEHK
>SDY_1723 hypothetical protein
MPRTGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITP
VREALLRLISVNALSVTPAQAFTVPEVGNDSNLLIVFYVQIMPDDFVMQL
HRF
>SDY_2416 hypothetical protein
MTGKRTLPTMTHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAG
LTQAEVAERMGTKATAITRMESNLASGISGPSFATLKKFARATGKKLQIR
FV
>SDY_2225 hypothetical protein
MGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQR
FLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWWRDEILANSAIAGV
YAKSDDGKSAI
>SDY_1758 putative transcriptional regulator LYSR-type
MISPRKHQYYPFCCNMIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEK
NSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLT
GARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLNRKEGPNNDVV
RVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDI
GIGRMSDPELMTGLNYELLFLESLKLVVCPNHPLLQENVTLSRVLEWPVV
VSPEGTAPRQHSDALVQSQGCIETLSASLSRQLTVEYDYVWFVPSGAVKD
DLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSVMPLI
S
>SDY_2798 hypothetical bacteriophage protein
MAHKYVRRWINLTGTPAPNGLVDLWGQAWFVDQGQRLGRTYGAFTSRWFN
SIQFPGQSWTKLEPFAHSQAEIQRALADVTLSLDTADWFDIKAPIHNVIR
VDMPPKAHQQYREMEKEMFLELNGEGIEAPNAAAKTLKCLQIASGAVYTD
DAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRH
LDQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGNILVFFSHWWDLEQ
YQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDI
LLDAMKKRGIA
>SDY_0934 conserved hypothetical protein
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYL
RACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSK
YSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAK
MCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTP
KQEFPAELE
>SDY_4311 putative transcriptional regulator of sorbose uptake and utilization genes
MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGRDQGI
VTIAINYDYNENLWLEQQLKQKFGLKDIVVVLGNDEDEETQLAMMGLHGA
QLLDRLLEPSDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKL
ESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISA
YWDNLDVALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGDICSRFFD
IHGAMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGTIGALRGKYI
NCLVTNSSTAELLLK
>SDY_0767 putative regulatory protein
MDKLKGKSLSLPEVTKESIPERLRELIGKRSVRAAAKDWGLSFSTLNNYL
TRGTEPSLSVVRQIAAIEGVTIEWICGSHYDSHENQSISTNTHNENTKLI
MNIINALDAKDIERLSKTLALNGAKYLTQILEPENQGLLRLEGRKRVAAL
LLDDLPDECIREILEEIESSKLSSSVKSRAG
>SDY_2257 conserved hypothetical protein
MARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQ
ALRDMLAEGLSSGEAQPWEKDAFLRKVKAGIRK
>SDY_4143 putative DNA-binding protein
MTAKTKFKSPAFEAIHSAAAGLSSVDAIYAETMRTFDKACLTSVQDLQPV
EIKALREKLKVSQPVFAHYLNTSVSTVQKWESGAKRPNGISLKLLSIVQK
HGLDVLL
>SDY_4278 conserved hypothetical protein
MVGSGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMG
FKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>SDY_1249 hypothetical protein
MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV
IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI
INAAQVTGGRMQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV
>SDY_1140 hypothetical protein
MNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQ
LARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTV
IDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR
>SDY_1817 conserved hypothetical protein
MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEGNIHELG
TNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK
>SDY_1712 putative enzyme
MTDDFAPDGQLAKAILGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTG
KTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL
KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVI
VAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKVMDADVVVVNHHL
FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFCLQLGEPGYRGNLRELLA
NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK
EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS
VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGCAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
>SDY_2857 conserved hypothetical protein
MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSVGELTRITGL
SASATSQHLARMRDEGLINSQRDAQRILYSIKNEAVNAIIATLKNVYCP
>SDY_1957 conserved hypothetical protein
MGKRQLDEINRIRYELELMAVALAVENLTPQDLAELQELLEKLQQAQEKG
DMEQIINVNRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPA
ELREHIENYHLLLAALKAKDKEGCRYCLAEIMQQNIAILYQQYNR
>SDY_1735 putative transcriptional regulator
MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLL
ESQGYIIARPQSGYYVAPQAIKMPKVPVIPVTRDEAVDINTYIFDMLQAS
RDPSVVPFASAFPDPRLFPLQQLNRSLAQVSKNATAMSVIENLPPGNAEL
RQAIARRYVLQGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPC
FYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVKACWLMTNSQ
NPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDC
HDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLA
LVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYF
LWLELPEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWQWG
EREEQAVKQLGKLIQERL
>SDY_2913 conserved hypothetical protein
MPSKPGILEKWASDTILQREQRMTANAARAVKATRELVNAVPFLGGSDSE
DDYREALELVEYLIEEDDTNPLIDFLASRIAEYENNNEKFAEFDKAVAAM
PVGVALLRTLIDQHNLTYADLKNEIGSKSLVSQILSGQRSLTISHIKALS
ARFGVKPEWFL
>SDY_1139 hypothetical protein
MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAALALEANVSEPT
VNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDNSVESYTGKIFE
SAMATLAHVRHSLDKSAINRAVDLLTQAKKSPFSD
>SDY_3705 putative transcriptional regulator
MAFRVLTMAVDLCRLTTRTMNVNAGHERTSKARIIHQIQLIRGITLHFEV
KAPDNDPRWLTHLSVPQQTKVVDPQALVALFRQFLSEQEKHQRTPALEFI
VLLILQQLTRDARLDEQADGAGTTLAWKAQKLIRTQYHRPLSTALLAREL
YCNADYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISEARSLTEVAALCE
FNDVGYFRQIFRKHTGLTPAAWKRRYSKEHINS
>SDY_2939 putative transcriptional regulator
MALRNKAFHQLRQLFQQHTARWQHELPDLTKPQYAVMRAIADKPGIEQVA
LIEAAVSTKATLAEMLARMENRGLVRREHDAADKRRRFVWLTAEGEKILA
AAIPIGDSVDEEFLGRLSAEEQGLFVQLVRKMMNT
>SDY_1498 putative DEOR-type transcriptional regulator
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLT
RTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAAD
SSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTL
SLQGRITKEIISRYHVDIMVMSCKGLDINSGALDSNEAEAETKKTMIRQA
TEVVLLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQL
VW
>SDY_0371 hypothetical protein
MQLIGHNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEV
LAALRKGGYIEMNKGKLVAINRLPSEY
>SDY_1925 repressor protein CI
MNMKKKPLTPEQLEDAKRLKSIFNAKKKELGLSQESLAYELGVTQSAVSQ
LMAGINAINASHAAQLAKILNVKVGDFSPSLAKSIAEMALAIEEPLTRVP
AYEYPLLSCVQAGAFSMDDISYTAKDAIKWISTTTKASDRSFWLEVKGHS
MTAPQGGKPSFPEGMLILVDPEREIEDGDFCVARMNGDEFTFKRFIRESG
KAYLEPLNPRFDMIECNENCQFVGKVIKSQWNDETFD
>SDY_1786 putative ARAC-type regulatory protein
MYQRCFDNASETLFVAGKTPRLSRFAFSDAPKWESGHHVHDNETELIYVK
KGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQ
FQGAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLW
DAFAYTLAILYYENFKNAYRSEQGYIKKDV
>SDY_1361 putative DEOR-type transcriptional regulator
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRA
HGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNAL
LARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPL
TRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVL
TDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTVHVVDI
>SDY_2012 hypothetical protein
MLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKL
DWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRR
TLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>SDY_0180 hypothetical protein
MPESRCYFYQDLMLPVLLDSLRGDWQANELARSLARLKAMDNNGLLRRTL
AAWFRHNVQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYV
ALQLDEER
>SDY_2734 hypothetical protein
MAFRVLTMAVDLCRLTTRTMNVNAGHERTSKARIIHQIQLIRGITNNFNT
GQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA
>SDY_0506 putative response regulator
MIRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAWSALIRDDVNV
AVIDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASG
YLTKRCGPEELVQAVRSVGLGGHYLCADAIRALRGGGQPAQALEILTPRE
REVFDLLVKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFV
LDHHLLAGH
>SDY_1872 conserved hypothetical protein
MNKHTEHDTREHLLAMGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFR
SKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQH
GTISGCLTVKLSAEVYDLSEDMRSAMDKGARGVIALLSQALENGRDSHCL
TFCGEPLQQAQVLYALWLGANLQAKISRNSEPLENALAHVKTIIATPAV
>SDY_4134 putative transcriptional regulator
MMRSVTMKPVVLVVDDDTAICALLQDVLSEHVFTVSVCHTGQEAILRIEG
DPDIALVVLDMMLPDTNGLRVLQQIQKLRPTLPVVMLTGMGSKSDVVVGL
EMGADDYICKPFTPRVVVARLKAVLRRVGALAVNDEKSAGLSFNGWYLDT
MRCQLHNPLQQHVELTQGEYGLLLALAQNASRVLSREQLLAFTHSDSVEV
FDRTIDVLIMRLRRKIELNPHQPMLIKTLRGLGYVFAADVH
>SDY_0779 putative toxin
MSRRAGTPTAKKVTQLVNVEKHVEGFRQVREAHRRELIDDYVELISDLIR
EVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEK
LAQESRERHQIVENFLLVLGVSPEIARRDSEGMEHHVSEETLDAFRLFTQ
KHGAK
>SDY_0380 hypothetical protein
MPFYFRKECQLNSGYLIGSDYANHIARRMVVPPYRTGGQAQFIEQPVPKN
THDERINLLLDYLRQNIAQQHDLDSLAQRVMMSRRTLTRHFMKATGSSIA
EWLITERLRRSQELLGSSQLPVERIAAEVGFLSPVTWRQHFKSHFVVSPA
EWRKTFRGMA
>SDY_2433 putative transcriptional regulator
MNAVKEIAEQEKHNPTRTLRIGCFPSACACILPGIIRYFETYHPQIKIIP
YEENSSEIIDSVQNETIDAGFVHFPVTGMYSVPVYQDKFTVVLPDAHPLA
KNNAISVEELVGEPLIISKGRYELSIMALFKEKNITPVIKYEFNHPDTAI
SFIRQGLGIALLPELTLKAVAGELCSVPLEPTFYRQISLLVKEAPVEGSP
LFLLQMCMETLVVKGIL
>SDY_1922 hypothetical protein
MLKITPNFAQERGLNQLRHEWKQHRTYLMYALTGSGKTGLAAFVTAGMVE
RGMRVMFVCPYTILLNQTAERFTEYGLPWEEISFVWRDHPNYDPSRLIQI
ASADTLIRREFPDNIDLLIIDEAHMKRRALLEVIRDKDIRVLGLSGTPFA
AWMGKYYECLIKPTTIRELIQRGDLSDYEFFAPSMPDLACVKTSNTVFGR
DYNEEQLASIMGSSDLVGDI
>SDY_0455 acrR, acrAB operon repressor
MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW
HFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLEST
VTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE
AKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLE
MYLLCPTLRNPATNE
>SDY_4097 adiY, putative ARAC-type regulatory protein
MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL
NNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV
AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDS
VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR
YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER
TVA
>SDY_4662 arcA, negative response regulator of genes in aerobic pathways
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL
VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS
LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED
>SDY_3413 argR, repressor of arg regulon
MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRML
TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHT
SPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILE
LFDQEL
>SDY_3561 arsR, transcriptional repressor of chromosomal ars operon
MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRH
LALLRESGLLLDRKKGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKVQAIV
RNLARQNCSADSKNICS
>SDY_2911 ascG, ascBF operon repressor
MMTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL
LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG
KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNR
RLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSVERLA
GYKDALAQHGIALNEKLIANGKWTPASGAEGVETLLEHGAKFSALVASND
DMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYIVPALSSVKIPVTEMI
QEIIGRLIFMLDGGDFSPPKTFSGKLICRDSLIALSR
>SDY_4005 asnC, regulator for asnA, asnC and gidA
MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAG
IITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYY
TTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTI
KP
>SDY_2186 baeR, transcriptional response regulatory protein
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYV
RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL
EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRF
QASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRT
IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV
>SDY_3755 birA, biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor
MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV
FTVPGKGYSLPEPIQLLNAEQILGQLDGGSVTVLPVIDSTNQYLLDRIGE
LKSGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLS
LVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQ
IVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAAL
ELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLL
EQDGIIKPWMGGEISLRSAEK
>SDY_2246 cbl, transcriptional regulator cys regulon
MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFV
RRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATT
HTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLHNGEADIGIASE
RLSNDPQLVAFPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQG
ITGRSRIDDAFAHKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGE
QEEKNLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI
KRQVMENSEEEIDYQI
>SDY_2030 cobB, putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase
MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAG
ISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ
QPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL
LKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHIVWFGEMPLGMDEI
YMALSMADIFIAIGTSGHVYPAAGFVHEAKLYGAHTVELNLEPSQVGNEF
AEKYYGPASQVVPEFVEKLLKGL
>SDY_3834 cpxR, transcriptional regulator in 2-component system
MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLL
DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK
PFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF
DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS
>SDY_4659 creB, catabolic regulation response regulator
MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDV
MILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADD
YVAKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFD
TPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIK
TLRAKLRAINPDLSPINTHRGMGYSLRGL
>SDY_2731 csiE, conserved hypothetical protein
MLMGDLQMMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVD
DDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRR
GFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKR
FESRDIHFLCLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGR
HWQRRALQPVPSDEPLFMALLFSMLRVPDPLRDAHQRDRQLRQSIKRLVN
HFRELGNVRFYDEQGLCDQLYTHLAQALNRSLFAIGIDNTLPEEFARLYP
RLVRTTRAALAGFESEYGVHLSDEESDLVAVIFGAWLMQENDLHEKQIIL
LTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAPY
TMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA
>SDY_4347 cspA, cold shock protein 7.4
MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQK
VSFTIESGAKGPAAGNVTSL
>SDY_1969 cspC, cold shock protein
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV
EFEIQDGQKGPAAVNVTAI
>SDY_2381 cspD, cold shock protein
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQF
DVHQGPKGNHASVIVPVEVEAAVA
>SDY_0546 cspE, cold shock protein
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRV
EFEITNGAKGPSAANVIAL
>SDY_0964 cspH, cold shock-like protein
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLR
VEFCRVNGLRGPTAANVYLS
>SDY_1345 cysB, positive transcriptional regulator for cysteine regulon
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFS
RSGKHLTQVTPAGQEIIHIAREVLSKVDAIKSVAGEHTWPDKGSLYIATT
HTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATE
ALHLYEDLVMLPCYHWNRAIVVTPDHPLVGKKAITIEELAQYPLVTYTFG
FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP
VADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV
DAAVALRSNEEIEVMFKDIKLPEK
>SDY_3803 cytR, regulator for deo operon, udp, cdd, tsx, nupC, and nupG
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAARE
VGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLV
LIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMV
MANEFAPELELPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCR
YRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLLDLPQPPTAVF
CHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR
YEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIRGSTRALP
>SDY_3341 deaD, inducible ATP-independent RNA helicase
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQ
AECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPT
RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGQQIVVGTP
GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT
ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN
EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI
GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR
LEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ
GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV
GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFSGERR
EGGRHFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
>SDY_0842 deoR, transcriptional repressor for deo operon, tsx, nupG
METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVV
LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDC
GTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNT
IFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMLMA
QKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKL
MY
>SDY_0800 dinG, probably ATP-dependent helicase
MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL
AIEAPTGIGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL
KKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ
EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY
YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG
HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI
PERLNAHCEELYELITSLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ
RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS
KLWLLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI
VIPRMRVEPSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRF
LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL
KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL
IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG
IVKKKEKTKSPRRRRR
>SDY_3259 ebgR, regulator of ebg operon
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTS
SARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLAIEL
TNCYEHNGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSG
YDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYG
RLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVL
RAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLV
YEKARDGRALPLLVFVPSKLKLRGTTR
>SDY_2879 emrR, regulator of plasmid mcrB operon
MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENRNKMLKA
QGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGW
IERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQ
LEQITRKLLSRLDQMEQAGVVLEAMS
>SDY_4477 evgA, putative positive transcription regulator
MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVI
IDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFV
SKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEIS
VMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQR
NKIG
>SDY_3281 exuR, negative regulator of exu regulon, exuT, uxaAC, and uxuB
MPGAHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVS
RTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQTADNNMEFANYGPF
ELLQARQLIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQ
FHIQVALATQNSALAAIVEKMWPQRSHNPYWKKLHEHIDSRTVDNWCDDH
DQILKALIRKDPHAAKLAMWQHLENTKIMLFNETSDDFEFNADRYLFAEN
PVVHLDTATSGSK
>SDY_1224 fadR, negative regulator for fad regulon, and positive activator of fabA
MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDN
LLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFR
GLAFASGNPIYGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALC
SEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR
>SDY_4299 fecI, probable RNA polymerase sigma factor
MSDRSTTTASLTFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVM
VSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKAYLEMLALMPEGGAPS
PEERESRLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLAVSI
SSVKKYVAKAVEHCLLFRLEYGL
>SDY_3438 fis, site-specific DNA inversion stimulation factor
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>SDY_2081 flgM, anti-FliA factor
MSIDRTSPLKPVSTVQPRETTDAPVTNTRAAKTTASTSTSVTLSDAQAKL
MQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN
>SDY_1095 fliA, alternative sigma factor 28
MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGI
GLLNAVERYDALQGTAFTTYAVQCIRGAMLDELRSRDWVPRSVRRNAREV
AQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWR
EEHGDSIELVTDDYQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLY
YQEELNLKEIGAELEVGESRVSQLHSQAIKRLRTKLGKL
>SDY_0110 fruR, transcriptional repressor of fru operon and others
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN
AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE
DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA
LDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG
FRTAWKDDPREVYFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALL
QGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
>SDY_3023 fucR, positive regulator of the fuc operon
MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILR
NHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALD
ASSTCWYLARQLPDINIQVFTNSHPICHELGKRERIQLFSSGGTLERKYG
CYVNPSLISQLKSLEIDLFIFSCEGIDSSSALWDSNAINADYKSMLLKRA
AQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSLVTA
>SDY_3054 galR, repressor of galETK operon
MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNAN
ARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHN
EQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPG
FENRCIALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYD
ALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACYNDSMAA
GAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA
ELALALADNRPLPEITNVFSPTLVRRHSVSTPSLEASHHATSD
>SDY_2129 galS, mgl repressor
MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNAN
AQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVVQQHQKYMLIGNSYHE
AEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPG
YAHRCVCLDNLSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMS
ALKEQDIIPPESWIGTGTPDMPGGEAAMVELLGRNLQLTAVFAYNDNMAA
GALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT
ELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM
>SDY_2262 gatR, Galactitol utilization operon repressor
MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRFLEQKGV
VTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEG
MTVILDSGSTTMLIAKGLMTAKNITVITNSLPAAFALSENKDITLVVCGG
TVRHKTRSMHGSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISG
AMVTAANKVIAVLDSSKFNRRGFNQVLPIEKIDIIITDDAVSDVDKLALQ
KTRVKLITV
>SDY_3026 gcvA, positive regulator of gcv operon
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGL
KLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSL
LPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRG
NWLGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDW
QTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEA
GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR
FRYEQ
>SDY_3652 glpR, repressor of the glp operon
MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLIL
RHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIG
TTPEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGG
IIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSR
HVMLVVDHSKFGRNAMVNMGSISMVDAVYTDAPPPVSVMQVLTDHHIQLE
LC
>SDY_3589 gntR, regulator of gluconate operon
MTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRAIGVL
LPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWN
IDGLILTERTHTPRTLKMIEVAGIPVVELMDSKSPCLDIAVGFDNFEAAR
QMTAAIIARGHRHIAYLGARLDERTIIKQKGYEQAMRDAGLVPYSVMVEQ
SSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDM
AIAGFHGHDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKML
DLGFTLSPGGSI
>SDY_3362 greA, transcription elongation factor
MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQ
GFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTY
RIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKV
EYL
>SDY_3670 greB, transcription elongation factor
MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQY
NKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVT
HRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYV
NAIEYVKP
>SDY_2903 gutM, glucitol operon activator
MVSALITVAAIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGRSSGRFK
PRVVVAIALDDQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIF
PHDPLSQNALSLALKLKRG
>SDY_0083 hepA, probable ATP-dependent RNA helicase
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRRDTEESGVALREV
FLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQ
RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQ
LVICSPDFVRRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR
QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS
HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDL
INYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ
ALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD
FPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAALVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESL
DQAGWRLDALRLIVVTHQ
>SDY_2924 hypB, guanine-nucleotide binding protein
MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAAHPKMKITGIKAPEFTP
SQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNCLAERNRARFA
ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI
RATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNAILFIENVGNLVCPA
SFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDV
EKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA
>SDY_3165 iciA, replication initiation inhibitor
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPL
LVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNAD
SLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQA
LPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDM
HQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELA
SGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD
>SDY_4323 iclR, repressor of aceBA operon
MKMISTIQKKETVMVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWI
AESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAH
AFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQ
VQCTHLMRMSAPIGGKLPMHASGAGKVFLAQLSEEQVTKLLHRKGLHAYT
HATLVSPVHLKEDLAQTRKRGYSFDNEEHALGLRCLAACIFDEHREPFAA
ISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR
>SDY_3975 ilvY, positive regulator for ilvC
MRKLIYSQRHIAISATSTLRAAPLDLRDLKTFLHLAESRHFGRSARAMHV
SPSTLSRQIQRLEEDLGQPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQ
LRHTIDQQGPSLSGELHIFCSVTAAYSHLPPILDRFRAEHPSVEIKLTTG
DAADAMEKVVTGEADLAIAGKPETLPGAVAFSMLENLAVVLIAPALPCPV
RNQVSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPMIYATVGGHE
AMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCAQ
KKRLHEPLIEAFWKILPNH
>SDY_0629 kdpE, regulator of kdp operon
MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLII
LDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLS
KPFGIGELQARMRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEV
HLTPIEFRLLAVLLNNAEKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR
QKLEQDPARPSHFITETGIGYRFML
>SDY_0379 lacI, transcriptional repressor of the lac operon
MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPN
RVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVE
RSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACANVPALFLDV
SDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG
WHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNGGIVPTAMLVANDQMA
LGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTS
VDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPKTQTASPRALADSLMQLA
RQVSRLESGQ
>SDY_4531 lexA, regulator for SOS regulon
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQV
DPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGD
WL
>SDY_4037 lldR, transcriptional regulator
MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLRE
ALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDNSFD
ILEARYAIEASTAWHAAMRATPDDKEKIQLCFEATLSEDPDIASQADVRF
HLAIAEASHNIVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQ
AVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHARITRLPGEHN
EHSREKNA
>SDY_2485 lrhA, NADH dehydrogenase transcriptional regulator, LysR family
MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLE
QLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACLSLMFSNLQGV
LTIGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVD
LMVTTHRPSAFKALNLRTSPTHWYCAAEYVLRKGEPIPLVLLDDPSPFRD
MVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPVEMMSPDLRVL
SGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPISAPE
GDDSLLIERDIE
>SDY_2372 lrp, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR
RLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKL
EEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM
EEVKQSNRLVIKTR
>SDY_3056 lysR, positive regulator for lys
MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKL
FERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIAC
LPVFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTE
TLHTPAGTERTELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRT
DSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGVSVVNPLTALD
YAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSEHLQAGLPKLVTS
LDAILSSATTA
>SDY_1841 malI, repressor of malX and Y genes
MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAAIEELGF
VRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL
HVGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFA
SRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAER
VGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHNPTISAVVCY
NETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV
TWASTPARELGTTLADRMMQKITHEETHSRNLIIPARLIAAK
>SDY_3658 malT, positive regulator of mal regulon
MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLVLITSPAGYGKTTLIS
QWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKR
QYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP
ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLS
SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH
LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE
IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES
WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL
PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREGTMHTE
FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC
KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET
QEKAFQLINEQHLEQLPMHESLVRIRAQLLWAWARLDEAEASARSGIEVL
SSYQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA
NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG
EFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL
DALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILREI
NQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSGYS
NEQIAGELEVAATTIKTHIRNLYQKLGVAHRQAAVQHAQKLLKMMGYGV
>SDY_1596 marA, MarA
MTMSKRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK
ETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN
YFDVPPHKYRMTNMQGESRFLHPLNHYNS
>SDY_1597 marR, MarR
MVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLG
ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDL
HQELTKNLTADEVATLEHLLKKVLP
>SDY_3773 metJ, repressor of all met genes but metF
MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINP
ETWEY
>SDY_3915 metR, regulator for metE and metH
MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFV
RKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSC
IQWLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPR
SGLHYSPMFDYEVRLVLAPDHPLAAKTRITPEDLASKTLLIYPVQRSRLD
VWRHFLQPAGVSPSLKSVDNTLLLIQMVAARMGIAALPHWVVESFERQGL
VVTKTLGEGLWSRLYAAVRDGEQRQPITAAFIRSARNHACDHLPFVKSAE
RPTYDAPTVRPGSPARL
>SDY_2036 mfd, transcription-repair coupling factor
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT
MQRGVLIVPVNTLMRRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ
RTLEEVEAINLLPAHEFPIDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN
ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE
LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE
AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGVEENAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHEREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVA
EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVN
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEATASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF
GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL
IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENTIA
>SDY_1562 mlc, putative NAGC-like transcriptional regulator
MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI
VREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLA
LRDLSSNLVVEESQELALKDDSPLLDRIISNIDQFFIRHQKKLERLTSIA
ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT
MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV
DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL
CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI
LFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL
IRLLQG
>SDY_2245 nac, nitrogen assimilation control protein
MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIR
TKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPG
TAASSITMPLLQAVRAEFPEIVIYLQENSGAVLNEKLINHQLDMAVIYEH
SPVAGVSSQALLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAVRL
RVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPESAARSLCGAV
NGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQ
WQLVS
>SDY_0610 nagC, transcriptional repressor of N-acetylglucosamine operon
MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVT
KITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATI
TLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI
SVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA
LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV
EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI
CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV
LLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILL
QHLLEN
>SDY_1275 narL, NarL
MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES
LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALK
RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTE
RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL
KSRVEAAVWVHQERIF
>SDY_0885 narP, nitrate/nitrite response regulator
MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR
LDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALID
AGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDP
FSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS
RVAATILFLQQRGAQ
>SDY_0019 nhaR, transcriptional activator of nhaA
MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQG
KLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG
VADALSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIIS
DCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRR
SMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAYD
FYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV
R
>SDY_3369 nlp, regulatory factor of maltose metabolism
MESNFIDWHPADIIVGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGE
MIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK
>SDY_3348 nusA, transcription pausing
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQID
RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV
TFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNI
SLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRS
KPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE
DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA
EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE
PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLTFKLAA
RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA
>SDY_0318 nusB, NusB
MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE
LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY
KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK
>SDY_3746 nusG, component in transcription antitermination
MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVV
EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP
APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEE
VDYEKSRLKVSVSIFGRATPVELDFSQVEKA
>SDY_3671 ompR, response regulator affecting transcription of ompC and ompF
MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH
LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD
DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTR
EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS
IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>SDY_3796 oxyR, OxyR
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER
TSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPT
VGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVK
ESEAFIEVPLFDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCL
RDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERK
RDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFDKV
LKQAV
>SDY_0143 pdhR, transcriptional regulator for pyruvate dehydrogenase complex
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPS
LREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDL
LETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAV
LQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSS
HRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRECSLRRLE
QRKN
>SDY_4114 phnF, putative transcriptional regulator
MHLSTHPTSYPTCYQEIAAKLEQELRQHYRCGDYLPAEQQLAARFEVNRH
TLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSH
PTSEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGVALCLIDHYF
ADLTLWPTLQRFDSGSLHDFLREQTGIALRRSQTRINARRAQAKECQRLE
IPNMSPLLCVRTLNHRDGESSPAEYSVSLTRADMIEFTMEH
>SDY_4123 phnO, putative regulator, phn operon
MPACELRPATQYDTDAVYALICELKQAEFDHHAFLVGFNANLRDPNMRYH
LALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAW
AEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL
>SDY_0338 phoB, positive response regulator for pho regulon
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLI
LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMTGE
EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR
RLRKALEPGGHDRMVQTVRGTGYRFSTRF
>SDY_2022 phoP, transcriptional regulatory protein
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIV
DLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT
KPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKL
TAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKK
IQAQYPQEVITTVRGQGYLFELR
>SDY_1940 pspA, phage shock protein
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARA
LAEKKQLTRRIEQASAREIEWQEKAELALLKDREDLARAALIEKQKLTDL
IKSLEHEVTLVDDTLVRMKKEIGELENKLSETRARQQALMLRHQAANSSR
DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAEL
KADDAISEQLAQLKAKMKQDNQ
>SDY_1938 pspC, phage shock protein
MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLA
LFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLRE
MERYVTSDTFTLRSRFRQL
>SDY_1941 pspF, psp operon transcriptional activator
MANFIMAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELI
ASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR
FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV
CATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFSI
QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY
PLDDIIIDPFKRRPPEEANAVSENTSLPTLPLDLREFQMQQEKELLQLSL
QQGKYNQKHAAELLGLTYHQFRALLKKHQI
>SDY_1884 purR, PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV
ARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNN
LEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEA
KADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF
MKAMEEAMIKVPKSWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIM
AMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET
AFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>SDY_3419 qseA, quorum sensing regulator A
MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLN
RSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSS
TMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQD
SSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEF
ELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGLAYVPLMWVINEINR
GELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGKLFQ
EMHGRGKEK
>SDY_3994 rbsR, regulator for rbs operon
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSAL
ARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGD
EQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPF
DGDRDLIQDNSLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYR
AAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMA
VGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA
IDVLIHRIIQPPPQQQ
>SDY_0857 rcsB, positive response regulator for colanic capsule biosynthesis
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDA
HVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLD
LDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKR
LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIA
LLNYLSSVTLSPADKD
>SDY_4084 recG, DNA helicase
MKGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHL
YPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFN
AAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTP
VYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRT
LHRPRPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQP
LSANDTLKNKLLAALPFKPTGAQARVVAEIECDMALNVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGW
LAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRTDIIDRVRHACMTEGRQAYWVCTLIEESELLE
AQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT
PLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD
LLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETERYSNA
>SDY_3001 relA, (p)ppGpp synthetase I
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHP
DASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG
KSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVV
IKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED
YCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVY
GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG
VAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ
VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD
RDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGD
IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE
RIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASR
SDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>SDY_3903 rfaH, transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPL
FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK
PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI
KHSVKNTEFRKL
>SDY_3840 rhaR, positive regulator for rhaRS operon
MVFCNNANLLNVFVRHIANNQLRSLAEVATVVHQLKLLKDDFFASDQQAV
AVADCYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHA
DDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSVSAGQPHWRLGS
MGMAQARQIIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLP
PTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMT
INQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT
PSQWRHLNSQKD
>SDY_3841 rhaS, positive regulator for rhaBAD operon
MTVLPSVDFFPSGNTSVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVF
NGQPYTITGGTVCFVRDHDRYLYEHTDNLCLTNVLYRSPDRFQFLAGLNQ
LLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILF
MQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLS
LRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSD
SNHFSTLFRREFNWSPRDIRQGRDGFLQ
>SDY_3969 rhlB, putative ATP-dependent RNA helicase
MSKTHLTEQKFSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQI
HADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT
LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLT
RPRTGNGPRRTGAPRNRRRSG
>SDY_0806 rhlE, putative ATP-dependent RNA helicase
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQV
EILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEK
LLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQLGGGGRG
QGGGRGQQQPLRGEGGAKSSSAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
AAAQ
>SDY_3966 rho, transcription termination factor Rho
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIF
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK
IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG
NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP
DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA
EKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLI
NKLAMTKTNDDFFEMMKRS
>SDY_1366 rnb, RNase II
MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQ
MKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIV
PDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRCHPLKGDRSFYAELTQY
ITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTI
DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF
TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW
RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA
ARILRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR
KYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLY
ARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
>SDY_2808 rnc, RNase III, ds RNA
MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSY
VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGE
LKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPG
DKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP
VVGTGSSRRKAEQAAAEQALKKLELE
>SDY_4657 rob, right origin-binding protein
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI
GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTP
ALYRRSPEWSAFGIRPPLRLGEFTIPEHKFVTLEDTPLIGVTQSYSCSLE
QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTT
ALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM
LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
>SDY_3471 rpoA, RNA polymerase, alpha subunit
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL
TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVRRGR
GYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK
LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
>SDY_3741 rpoB, RNA polymerase, beta subunit
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE
AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKL
RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR
RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET
ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLELLAKLSQSGHKRIETLFTNDLDHGPYISET
LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV
GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV
DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI
YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM
RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI
TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE
MQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL
GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP
LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD
LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
>SDY_3740 rpoC, RNA polymerase, beta prime subunit
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE
RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG
MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ
LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV
RITEYKKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFTYAARSGASVGIDDMVIPEKK
HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN
LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK
PGTANILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI
QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG
AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT
DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF
LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP
KEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND
KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA
TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAG
LGGSDNE
>SDY_3251 rpoD, RNA polymerase, sigma(70) factor
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND
MGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRM
YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR
VEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQENLDDDEDEDEED
GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEIL
KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAATAMNKPWSEKLHDVSEEVHRALQKLLQIEEE
TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI
AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG
LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
>SDY_2814 rpoE, RNA polymerase
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVV
QEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA
IEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE
LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR
>SDY_3612 rpoH, RNA polymerase, sigma(32) factor
MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAA
KTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN
QDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLY
LQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNK
STLQELADRYGVSAERVRQLEKNAMKKLRAAIEA
>SDY_3383 rpoN, RNA polymerase, sigma(54 or 60) factor
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQI
DTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGT
SGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDD
TGYLTVPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLL
IQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAV
NLIQSLDPRPGQSIQTDEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN
QHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQ
QQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
IMVARRTVAKYRESLSIPPSNQRKQLV
>SDY_2940 rpoS, RNA polymerase, sigma S factor
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA
TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR
LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI
RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE
QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT
QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIDLTRE
RVRQIQVEGLRRLREILQTQGLNIEALFRE
>SDY_4081 rpoZ, DNA-directed RNA polymerase omega chain
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA
LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
>SDY_1824 rstA, response transcriptional regulatory protein
MNVMNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPD
LVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACD
YMPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINR
VVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRS
VDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE
>SDY_1865 slyA, transcriptional regulator for cryptic hemolysin
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQS
QIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEP
LISEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG
>SDY_4504 soxR, redox-sensing activator of soxS
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYK
RDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWRE
ELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLE
DEQN
>SDY_4505 soxS, regulation of superoxide response regulon
MSHQKIIQDLIAWIAEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL
GDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTP
SDYRHRL
>SDY_4082 spoT, (p)ppGpp synthetase II
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK
EQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL
NEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGDGSIPP
ATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTT
TSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN
RN
>SDY_2904 srlR, regulator for glucitol operon
MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILEHAGTVI
RTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAG
STVLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA
SFHGQLAENAFEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAR
EVILMADSSKFGRKSPNVVCSLESVDKLITDAGIDPAFRQALEEKGLDVI
ITGESNE
>SDY_2817 srmB, ATP-dependent RNA helicase
MTVTTFSELELYESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATR
SIVFVRKRERVHELANWLREAGINNRYLEGEMVQGKRNEAIKRLTEGRVN
VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS
LVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA
KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE
>SDY_3310 tdcA, transcriptional activator of tdc operon
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFG
VELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVS
FGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFA
IGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLP
QTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDM
TSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSY
NGCRRRQLIEVG
>SDY_0969 torR, response transcriptional regulator for torA
MPHHIVIVEDEPVTQARLQSYFTQEGYTISVTASGAGLREIMQNQPVDLI
LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYV
TKLLELRELVVRVKNLLWRIDLARQVQPLTQDNCYRFAGYCLNVSRHTLE
RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVD
VLIRRLRHKLSADLLVTQHGEGYFLAADVC
>SDY_4260 treR, repressor of treA,B,C
MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMNQHGFSP
SRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES
QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAK
GFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLA
FCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKY
LQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQATCQLIAQVT
GRSEPQQIIIPATLS
>SDY_4654 trpR, regulator for trp operon and aroH
MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREA
LGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWL
EEVLLKSD
>SDY_4071 ttk, putative transcriptional regulator
MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQRITTAK
LAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTA
RLRLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQL
RQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDF
DARWPLIAAQLQ
>SDY_1401 tyrR, TyrR
MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFES
FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS
KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV
VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV
SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA
SPRASKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI
GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKG
MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA
ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK
LREYGLSQKKNEE
>SDY_4150 uhpA, response regulator, positive activator of uhpT transcription
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQV
CICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLS
KRCSPDELIVAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLA
QGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW
>SDY_1837 uidR, repressor for uid operon
MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYH
HFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFG
QRALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDI
NTAMTSRLLLDLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS
>SDY_1220 umuD, UmuD
MLFIKPADLREILTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSA
TYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQ
LRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR
>SDY_1104 uvrY, putative 2-component transcriptional regulator
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDV
VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAG
YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASL
SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL
THLAIRHGLCNAETLSSQ
>SDY_4410 vacB, putative enzyme
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPAS
RDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVK
GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR
REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA
RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI
WPQAVEQQVTGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVTPMLPEV
LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV
WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF
IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH
DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ
TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKC
DFMLDQVGNVFKGVISSITGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ
VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPHNVGK
TAREKAKKGDAGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKP
SAKTQKIAAATKAKRAAKKKVAE
>SDY_4060 waaP, putative LPS biosynthesis enzyme
MVWMVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSY
FLKWHRGTTLKEIIKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAF
GEKGMNPLTRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVA
TMVRDMHAAGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRV
PRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILKQEQGLLS
QAEAKATKIRERTIRKSL
>SDY_3710 xylR, putative regulator of xyl operon
MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARID
KIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIA
TDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEE
KYRGVVYQGLENAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQ
VCEHLHIPVPEKLCVIGIGNEELTRYLSRVALSSVTQGARQMGYQAAKLL
HRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACK
GIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTT
LSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
>SDY_0179 yaeG, conserved hypothetical protein
MAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGR
VVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVC
MTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGID
LNQPRVVAIVEVDSGQLGVDSAMAELPQLQNALTTPERNNLVAIVSLTEM
VVLKPALNSFGRWDAEDHRKRVEQLITRMKEYGQLRFRVSLGNYFSGPGS
IARSYRTAKTTMVVGK
>SDY_0207 yaeO, conserved hypothetical protein
MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN
VEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES
>SDY_0227 yafC, putative transcriptional regulator LYSR-type
MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLL
NRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAA
TPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLT
DSSLRARPLFNSYRKIIASPNYISRYGKPETIDDLKQHVCLGFTEPASLN
TWPIACSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMINREIAR
GELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPRGA
VREA
>SDY_0345 yajF, possible NAGC-like transcriptional regulator
MNHSMIISTALSLNLAGMITNCRRPCIANPVVHLYAIDIEKNKESTVRIG
IDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQAT
GQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLAN
DANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGE
WGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFATDYRRLSGHA
LKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGM
SNVDRLYQTVPQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>SDY_0321 ybaD, conserved hypothetical protein
MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPR
VVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGE
REVPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED
>SDY_0384 ybaO, putative LRP-like transcriptional regulator
MVFKPHRINCRDFTFKIKLKEKKIPCGRAMLDKIDHKLLALLQQDCTLSL
QALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIK
TQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFY
KRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE
>SDY_0415 ybbI, putative transcriptional regulator
MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLL
RQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQS
MRNQLLALANACPGDDSSDCPIIENLSGCCHHRAG
>SDY_0398 ybbS, putative transcriptional regulator LYSR-type
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFF
RTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINN
LLYNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVT
GTEALANTFSLEPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIE
DSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGFLPKSLCQSMI
DNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL
EIFGNPRS
>SDY_0396 ybbU, putative regulator
MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVSDISLNL
DLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLS
VAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLP
LHASGAGKALLYPLAEEELMSIILQTGLQQFTPTTFVDMPTLLKDLEQAR
ELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQ
GELVRDTARDISTALGLKAHP
>SDY_0533 ybdM, conserved hypothetical protein
MGDTMQQRLTQDLTQFLASLPEDDRINAINEIRMAIHQVSPFREEPVDCV
LWVKNSQLMPNDYNPNNVAPPEKKLLKKSIEIDGFTQPIVVTHTDKNALE
IVDGFHRHEIGKGSSSLKLCLKGYLPVTCLEGTRNQRIAATIRHNRARGR
HQITAMSEIVRELSQLG
>SDY_0551 ybeF, putative transcriptional regulator LYSR-type
MLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE
SILGALDIAGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNP
PISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLS
LEDDRETIDNAAHVLLLPEGQNFSGLRQRIQEMFPDRQISFTSFTSYTSY
NSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNSYNILTIAALVAN
SDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSLRAPIL
HGVIDVIRNAF
>SDY_0807 ybiH, putative transcriptional regulator
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIA
AITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIR
ELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHS
HLTRLIAAWTGCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFD
EEKTELINQTVTCHIDLILQGLSQRSL
>SDY_0988 ycdC, putative tet operon regulator
MTQGAVKTTGKRSRAVNAKKKAILSAALDTFSQFGFHGTRLEQIAELAGV
SKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRL
KLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVK
SGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVEN
VQRIIIEGIRPR
>SDY_2039 ycfQ, conserved hypothetical protein
MGSGLVNGGDYFYNNLSFTVTRYNGIMATDSTQCVKKSRGRPKVFDRDAA
LDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRY
IDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCT
TLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFL
NCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK
>SDY_2031 ycfX, putative NAGC-like transcriptional regulator
MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEA
DQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDV
RLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSY
ITGEFGHMRLPVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQH
YYHQPLQAPEIIALYDQGDEQARAHVERYLDLLAVCLGNILTIVDPDLVV
IGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLH
LTD
>SDY_1945 ycjC, conserved hypothetical protein
MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAIS
TLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHN
GNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHL
VAGQSYAINTGIPHSFSNTSAGICRIISAHTPTTF
>SDY_1408 ycjZ, putative transcriptional regulator LYSR-type
MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRL
LTRTTRSVVPTEAGEHLLSILGPMLHDIDSALTSLSDLQNRPSGTIRITT
VEHAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDACVRLGGE
MDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTS
GTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVE
RAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV
>SDY_1742 ydcN, conserved hypothetical protein
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVA
TLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFE
HFSIQMAPGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQSLNCGEGVR
FAADVTHVYRNGGEQTVHFHSLIHYPRS
>SDY_1585 ydfH, conserved hypothetical protein
MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQ
PVREAFIKLAENGLIQIRPQRGSYVNKISMSQVRNGSFIRQAIECAVARR
AASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQ
LAWDTIENLKATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVE
RAMTQHLQEISESVRQIRQENSDWFSEE
>SDY_1885 ydhB, putative transcriptional regulator LYSR-type
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFE
RRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDN
IVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATR
AIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVRED
TSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLN
EGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLR
EPEETPATGD
>SDY_1688 yeaM, putative ARAC-type regulatory protein
MMYRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGA
ITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPT
TCCTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQL
HLPVSSHPKIRAMVEMMAKEPVEWGSLGQWAGFFAMSERNLARLIVKETG
LSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQ
TPGRYIAGLTTVSPQSAKPDPRQ
>SDY_1700 yeaT, putative transcriptional regulator LYSR-type
MKHKTRIMNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALL
EQTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVP
QGMLRIISSFGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVD
LDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLTDLSALPCL
LIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR
SWWDVSENIASGHLVQVLLEYYQPANVWAVYVSRLATSAKVRITVEFLRQ
YFAEHYPNFSLEHA
>SDY_1039 yedW, putative 2-component transcriptional regulator
MNQAVSITYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGR
DGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVD
DRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDS
VSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSD
TNTVDVAIRRLRAKVDDPFPVMLPISRTCVFQ
>SDY_2224 yeeY, putative transcriptional regulator LYSR-type
MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESDLNIQLL
DRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVD
DTFPFSLLAPLIEAFCQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAM
HEPPYSSEFGFSRLGDLEQVFAVAPHHPLA
>SDY_2274 yegW, putative transcriptional regulator
MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGE
RDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARG
FSQQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVD
EEAVSIEESWVPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPD
AEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSDLYVFVCEE
>SDY_2164 yehT, conserved hypothetical protein
MEGRGMIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHK
LRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAINAFEEHA
FDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRI
YLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQY
LVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>SDY_2162 yehV, putative transcriptional regulator
MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRI
REIKRWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSL
RTWIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAIPDGVLINYI
AICLASARKKQGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLN
QLRPELFEGRTLLVWCGENRTSAQQQQLTSWQEQGHDIFPLGI
>SDY_2109 yeiE, putative transcriptional regulator LYSR-type
MHITLRQLEVFAEVLKSGSTPQASVMLALSQSAVSAALTDLEGQLGVQLF
DRVGKRLVVNEHGRLLYPRALALLEQAVEVEQLFREDNGAIRIYASSTIG
NYILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHS
TEIISEPWLEDELVVFTAPTSPLARGPVTLEQLAAAPWILRERGSGTREI
VDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRRVIEDQLQAGT
LSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR
>SDY_0895 yejH, putative ATP-dependent helicase
MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVMAELARLARG
RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV
ARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAA
TRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEDFKAQR
FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDED
GADVSERFRLQTPAQRTAFEQLFIRPHTRTPDIPLRWITAADILAQQALL
RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>SDY_2597 yfeD, conserved hypothetical protein
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLIL
VDTQVCEFIQNTPAFHNTPMLLEAEEPLAEYAPGIRTPAYRQIISAIDNM
THSEQEKVVQFLSREGIRNFLARLNIDESA
>SDY_2635 yfeG, putative ARAC-type regulatory protein
MKKTRTANVHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAW
QQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGI
PATRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVIT
RQANFLHNPDRVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENL
HQPAVRKVLGDNLLMAMGAMLEEAQPMVTVESISHQSYRRLLSRAREYVL
ENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE
LISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMREWG
>SDY_2623 yfeT, conserved hypothetical protein
MLYLTKIRNAESEFTGNEQKIADFLRANVSELKSVSSRKMAKQLGISQSS
IVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEV
IARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVG
RDLSFKLMKIGYRVTCEADTHVQATVSQALKKGDVQIAISYSGSKKEIVL
CAEAARKQGATVIAITSLTDSPLRRLAHYTLDTVSGETEWRSSSMSTRTA
QNSVTDLLFVGLVQLNDVESLKMIERSSELTQRLK
>SDY_2751 yfhH, conserved hypothetical protein
MEYKIHSRVSHIACCRHYFIARKDMNGLLRIRQRYQGLAQSDKKLADYLL
LQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALAS
QPESPSEPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECV
TMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQA
SSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQRRASH
CLYTIAEEQATKSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
LVKKLV
>SDY_2818 yfiE, putative transcriptional regulator LYSR-type
MFLHSKFDIFDRFGVMDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFH
IQQLEQEFSVQLFEKIGRRMCFTREGKKLLPHIYELTRVMDTLREAAKKE
SDPDGELRVVSGETLLSYRMLQVLQRFRQRAPKVRLSLQSLNCYVIRDAL
LNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIADVDFTEPGRHNA
CSFIINEPQCVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVS
YLPRFAVEKELESGELIELPFGEHSQTITAMCAHHAGKAVSPAMHTFIQC
VEDCFLPG
>SDY_2906 ygaA, putative 2-component transcriptional regulator
MSSQNDYQSNGRYDNIYSQIDSEAKMSFSVDVLANIAIELQRGIGHQDRF
QRLITTLRQVLECDASALLRYDLRQFIPLAIDGLAKDVLGRRFALEGHPR
LEAIARAGDVVRFPADSGLPDPYDGLIPGQESLKVHACVGLPLFAGQNLI
GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD
AAPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA
KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF
EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLA
ATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ
CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRNGD
EVILEAQHFAFPEVTLPPPEAAAVPVVKQNLREATEAFQRETIRQALAQN
HHNWAACARMLETDVANLHRLAKRLGLKD
>SDY_2854 ygaE, putative transcriptional regulator
MIRSHTMTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIA
RGGDEWEADVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGS
HYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARD
TARASELMRQHLLTPIPIIQQAMAGN
>SDY_2970 ygcP, putative anti-terminator regulatory protein
MPFLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKI
KNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAE
GFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIR
QPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>SDY_3147 yggD, putative transcriptional regulator
MATLTEDDVLEQLDAQDNLFSFMNTAHSILLQGIRQFLPSLFVDNDEEIV
EYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNE
QDETPGFADDMTWDFISNVNSITCNATLYDALKAMKFADFAVWSEARFSG
MVKTALTLVVTTTLKELTP
>SDY_3214 ygiX, putative 2-component transcriptional regulator
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVIL
DLTLPGMDGRDILREWREKGQREPVLILTARDALEERVEGLRLGADDYLC
KPFALIEVAARLEALMRRTNGQTSNELRHGNVMLDPGKRIATLAGEPLTL
KPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRK
LGSDFIRTVHGIGYTLGEK
>SDY_3266 ygjM, conserved hypothetical protein
MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLNDPENPLL
DLACAKITAWEESAPEFAEFNAMAQAVPGGIAVIRTLMDQYGLTLSDLPE
IGSKSMASRVLSGKRKLTLEHAKKLATRFGISPALFID
>SDY_3297 yhaJ, putative transcriptional regulator LYSR-type
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELD
VVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLT
IVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQLEQGRAD
IVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKY
RGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYP
MVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFNG
K
>SDY_3397 yhcI, putative NAGC-like transcriptional regulator
MVQHSDEKGGAMTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQ
ALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLV
KTLEQLTNLPTIAINDAQAAAWAEYQALEGDVTEMVFITVSTGVGGGVVS
GGKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGCGIAAAAQG
ELAGADAKTIFMRAGQGDEQAQQLIHRSAHVLARLIADIKATTDCQCVVV
GGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGE
KL
>SDY_3401 yhcK, putative FADA-type transcriptional regulator
MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFG
EGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSA
DTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDL
LAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLI
AARPTVTDQALHEHNNVSYQQHIAIVDAIRRHDPDEADRALQSHLNSVSA
TWYAFGQTTNKKK
>SDY_3415 yhcO, conserved hypothetical protein
MNIYTFDFDEIESQEDFYRDFSQAFGLAKDKVRDLDSLWDVLMNDVLPLP
LEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH
>SDY_3468 yhdM, putative transcriptional regulator
MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKF
IRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAEL
QSMQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC
>SDY_3669 yhgF, conserved hypothetical protein
MPFIARYRKEITGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKL
TDDLANAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWSD
PSHTPEVAAAQYIDADKGVADTKAALDGARYILMERFAEDAALLAKVRDY
LWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEG
VLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTW
RIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGQRATMGLD
PGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELV
AIGNGTASRETECFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEF
PDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKL
DAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNR
QQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAAT
QQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEF
KTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL
SNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNSRRG
GGNDRPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR
>SDY_3636 yhhG, conserved hypothetical protein
MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGT
QGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAV
LKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED
>SDY_3539 yhiE, conserved hypothetical protein
MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKLIIDTYHN
HILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLE
ITYGKHLPHKNSELCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQ
KFNIMYKLKLRRMSDIVTLGITSYF
>SDY_3533 yhiX, putative ARAC-type regulatory protein
MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRVDKCVEN
FVLVSRDTLSLFLPMLKEEALNLHAHKKVSSLLVHHCGRDIPVFQEVSQL
SQNKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTV
INNNIVHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMKRALQ
LIVIHVFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQRLSNR
DSAASIVAQGNFYGADCSAEGIRL
>SDY_4541 yhjC, putative transcriptional regulator LYSR-type
MFIKVAELESFSRAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKL
TPEGMTYYQRAKDVLSNLSELDGLFQQDATSISGKLRIDIPPGIAKSLLL
PRLSEFLYLHPGIELELSSHDRPVDILHDGFDCVIRTGALPEDGVIARPL
GNLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTPHLGVHPLGFEVASV
NGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRAGRLIEV
LPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEYLD
>SDY_4348 yiaG, conserved hypothetical protein
MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKID
DFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME
>SDY_4170 yidP, putative transcriptional regulator
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLV
AWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEI
MPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSL
QHLEGSKFEYIEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRI
TSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPEKS
>SDY_4202 yidZ, putative transcriptional regulator LYSR-type
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWF
DDPLFVNSPLGLTPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFE
LAAESPLMMIMLNALSKRLYQRYPQATIKLRNWDYDSLDAITRGEVDIGF
SGRESHPRSRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEKWDLDTF
LRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQSLFMAAQPDN
LLLATAPRYCQYYNQLHQLPLVALPLPFDVSQQKKLEVPFTLLWHKRNSH
NPKIVWLRETIKNLYASMA
>SDY_3992 yieP, yieP gene product
MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPSEIELGEQFGVS
RTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENF
HQVINHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKENFRR
ERWIEVDMAWHEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLD
LHQAIVDAIIQSDGDAAFKACQALLRSPDK
>SDY_3985 yifDA, Transcription regulator
MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGVNLFTR
HRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLW
ECMLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEA
PKMDEFSSQLLGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIG
ADEVPILTTSSAELAQQQIAMLNGCTWLPVSWARKKGGLHTVVDSTTLSR
PLYAIWLQNSDKNTLIRDLLKINVLDEVY
>SDY_3855 yiiD, putative acetyltransferase
MSQLPGLSWETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGS
ERDAWDAMAHHQMVVDEQGNLVAVGRLYINTDNEASIRFMAVHPDVQDKG
LGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTT
PIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTG
QKFITTMPETGNQNPHHTLFAGSLFSLATLTGWGLIWLMLRERHLGGTII
LADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDE
TPGAVFEGTYIVLPAKPFGPYEEGGNEEE
>SDY_3765 yijC, conserved hypothetical protein
MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFAS
LSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRI
AKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHF
IAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDVGVEQRRQLEE
RLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE
>SDY_3789 yijO, putative ARAC-type regulatory protein
MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGE
FVDTGAGATLVPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQ
WDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTAKLIVASLL
SHCRDLLGSQIQTASRSQALFEAIRNYIDERYASALTRESVAQAFYISPN
YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSN
YFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
>SDY_4333 yjaB, conserved hypothetical protein
MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRAELEELVRSFLPEA
PLWVAVNERDQPVGFMLLSGQHMDALFIDPDVCGCGVGRMLVEHALSMAP
ELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLNLAYVGA
>SDY_3731 yjaE, putative transcriptional regulator
MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLGGIKPGKESYMRLN
EKALDDFCQSLVDYLSAGHFSIYERILHKLESNGQLARAAKIWPQLEANT
QQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLD
AARVKHPA
>SDY_4440 yjdC, conserved hypothetical protein
MGKTEENSVQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFW
PDKEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKN
NRYPGCLFIAACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPA
MVAKQMELVLEGCLSRMLVNRS
>SDY_4237 yjdG, putative 2-component transcriptional regulator
MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPI
DLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGA
VDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ
DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLI
WLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ
>SDY_4411 yjeB, conserved hypothetical protein
MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLS
RAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITP
ACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE
>SDY_4360 yjfQ, putative DEOR-type transcriptional regulator
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLK
KVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVIN
CGSTAFLLGQEMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQS
ITLSPQGSENSLYAGHWMFTSSKGLTAEGLYKTDMLTAMAEQKMLSVVGK
LVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPETLQQLEAQGVSILR
V
>SDY_4269 yjgJ, conserved hypothetical protein
MVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARRHPQSAQCVTDFMSTV
MSGLSAKAREGHSLEQLCATAALAGEAIKTILKE
>SDY_4601 yjiR, putative regulator
MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTL
ETMKLITPQPRSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLVA
HSDSSIVPLSKSTPDVETPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRV
LREQIARLMLDSGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESP
CYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWPIKGIILVPNC
NNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWD
IDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPSTQM
AAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGF
LLWIELPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPL
SETYREALKQIGEAVYRAME
>SDY_1633 yneJ, putative transcriptional regulator LYSR-type
MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELGVDLFIR
ENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTA
AVRIPATLAEFNRRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPVNH
TAIDGIPVYREELMIVTPQGHAAVIRASQVNGSNIYAFRANCSYRRHFES
WFHADGAAPGTIHEMESYHGMLACVVAGAGIALIPRSMLESMPGHHQVEA
WPLAEQWRWLTTWLVWRRGAKTRPLEAFIQLLDVPDSARQGYQ
>SDY_1561 ynfL, putative transcriptional regulator LYSR-type
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLL
ARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFT
SSAPFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLR
NTALPDTLEHTVIVHEPLMEMIPHEHPLANNPNVTLAELAKEPFVFFDPH
VGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFK
RVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR
>SDY_2740 yphH, putative NAGC-like transcriptional regulator
MKMRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNIL
QELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVA
NACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIH
GQVNPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK
WQNNSQKRDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV
VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW
QSGEPWITSWVYRSANAIGLSLYNFLNILNINQIWLYGRSCAFGEHWLNT
IIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGISYLYVETQLRQI
>SDY_3124 yqgE, conserved hypothetical protein
MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFRRSVVYI
CEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGG
PLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLV
ALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVD
ILTMPGVAGHA
>SDY_3062 yqhC, putative ARAC-type regulatory protein
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPDSQCSFLPMSCL
FLQSAGEMLQNCAQSNCRIIPKKLRDMKREEICRLLANKVNKLKNKENSL
SELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANE
YLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPS
MAASGINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTG
PCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAF
HHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQF
SREFKRYFGVTPGEDAARMRAMQGN
>SDY_3255 yqjI, conserved hypothetical protein
MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRG
GGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVI
YPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIK
ARCVGAALRQNPQMKQALDNFKAVLDLRVNQSDITDAQIKKIIAVIDRAA
FDITQLD
>SDY_3371 yrbA, conserved hypothetical protein
MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKK
QQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF
>SDY_4381 ytfH, conserved hypothetical protein
MGSLHRFVLCLNTLTPKLTFSNYVQKGKYEMSQVSLSQQLKEGNLFAEQC
PSREVLKHVTSRWGVLILVALREGTHRFSDLRRKMGGVSEKMLAQSLQAL
EQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
RDERAA