Gene list
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COG category: Transcription
Organism: Escherichia coli W3110, K-12
Number of genes found: 318
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| Escherichia coli W3110, K-12 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| aaeR | predicted DNA-binding transcriptional regulator, efflux system | RecName: Full=HTH-type transcriptional activator AaeR; | chromosome | CDS | 3389375 | 930 | + | 0.529032 | |
| abgR | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator AbgR; | chromosome | CDS | 1406455 | 909 | + | 0.49615 | |
| acrR | DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator AcrR; AltName: Full=Potential acrAB operon repressor; | chromosome | CDS | 484985 | 648 | + | 0.453704 | |
| adiY | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator AdiY; | chromosome | CDS | 4341846 | 762 | - | 0.413386 | |
| agaR | DNA-binding transcriptional dual regulator | RecName: Full=Putative aga operon transcriptional repressor; | chromosome | CDS | 3277711 | 810 | - | 0.522222 | |
| allR | DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional repressor AllR; AltName: Full=Negative regulator of allantoin and glyoxylate utilization operons; | chromosome | CDS | 532235 | 816 | + | 0.525735 | |
| alpA | DNA-binding transcriptional activator | RecName: Full=Prophage CP4-57 regulatory protein AlpA; | chromosome | CDS | 2757300 | 213 | + | 0.469484 | |
| alsK | D-allose kinase | RecName: Full=D-allose kinase; Short=Allokinase; EC=2.7.1.55; | chromosome | CDS | 4311449 | 1029 | - | 0.536443 | |
| appY | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator AppY; AltName: Full=M5 polypeptide; | chromosome | CDS | 582904 | 750 | + | 0.317333 | |
| araC | DNA-binding transcriptional dual regulator | RecName: Full=Arabinose operon regulatory protein; | chromosome | CDS | 70387 | 879 | + | 0.525597 | |
| arcA | DNA-binding response regulator in two-component regulatory system with ArcB or CpxA | RecName: Full=Aerobic respiration control protein ArcA; AltName: Full=Dye resistance protein; | chromosome | CDS | 4644270 | 717 | - | 0.51046 | |
| argP | DNA-binding transcriptional activator, replication initiation inhibitor | RecName: Full=Chromosome initiation inhibitor; AltName: Full=OriC replication inhibitor; | chromosome | CDS | 3058409 | 894 | + | 0.543624 | |
| argR | DNA-binding transcriptional dual regulator, L-arginine-binding | RecName: Full=Arginine repressor; | chromosome | CDS | 3384558 | 471 | + | 0.4862 | |
| arsR | DNA-binding transcriptional regulator | RecName: Full=Arsenical resistance operon repressor; | chromosome | CDS | 3991534 | 354 | - | 0.508475 | |
| ascG | DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator AscG; AltName: Full=Cryptic asc operon repressor; | chromosome | CDS | 2836910 | 1014 | - | 0.531558 | |
| asnC | DNA-binding transcriptional dual regulator | RecName: Full=Regulatory protein AsnC; | chromosome | CDS | 3709678 | 459 | + | 0.494553 | |
| baeR | DNA-binding response regulator in two-component regulatory system with BaeS | RecName: Full=Transcriptional regulatory protein BaeR; | chromosome | CDS | 2166413 | 723 | + | 0.540802 | |
| basR | DNA-binding response regulator in two-component regulatory system with BasS | RecName: Full=Transcriptional regulatory protein BasR; | chromosome | CDS | 4337960 | 669 | - | 0.532138 | |
| betI | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator BetI; | chromosome | CDS | 327971 | 588 | - | 0.568027 | |
| bglG | transcriptional antiterminator of the bgl operon | RecName: Full=Cryptic beta-glucoside bgl operon antiterminator; | chromosome | CDS | 3730114 | 837 | + | 0.428913 | |
| bglJ | DNA-binding transcriptional regulator | RecName: Full=Transcriptional activator protein BglJ; | chromosome | CDS | 4608894 | 624 | + | 0.456731 | |
| cadC | DNA-binding transcriptional activator | RecName: Full=Transcriptional activator CadC; | chromosome | CDS | 4365074 | 1539 | - | 0.419753 | |
| cbl | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator cbl; | chromosome | CDS | 2062101 | 951 | - | 0.48265 | |
| cdaR | DNA-binding transcriptional regulator | RecName: Full=Carbohydrate diacid regulator; AltName: Full=Sugar diacid regulator; | chromosome | CDS | 182463 | 1158 | + | 0.528497 | |
| chbR | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional regulator ChbR; AltName: Full=Chb operon repressor; | chromosome | CDS | 1820319 | 843 | - | 0.415184 | |
| citB | DNA-binding response regulator in two-component regulatory system with citA | RecName: Full=Transcriptional regulatory protein DpiA; AltName: Full=Destabilizer of plasmid inheritance; | chromosome | CDS | 653085 | 681 | + | 0.50514 | |
| cobB | deacetylase of acetyl-CoA synthetase, NAD-dependent | RecName: Full=NAD-dependent protein deacylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; | chromosome | CDS | 1181097 | 840 | + | 0.517857 | |
| cpxR | DNA-binding response regulator in two-component regulatory system with CpxA | RecName: Full=Transcriptional regulatory protein CpxR; | chromosome | CDS | 3531011 | 699 | + | 0.513591 | |
| creB | DNA-binding response regulator in two-component regulatory system with CreC | RecName: Full=Transcriptional regulatory protein CreB; | chromosome | CDS | 4640687 | 690 | + | 0.552174 | |
| csgD | DNA-binding transcriptional activator in two-component regulatory system | RecName: Full=CsgBAC operon transcriptional regulatory protein; | chromosome | CDS | 1102787 | 651 | - | 0.417819 | |
| csiR | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional repressor CsiR; AltName: Full=Carbon starvation induced regulator; | chromosome | CDS | 2794330 | 663 | + | 0.535445 | |
| cspA | major cold shock protein | RecName: Full=Cold shock protein CspA; Short=CSP-A; AltName: Full=7.4 kDa cold shock protein; AltName: Full=CS7.4; | chromosome | CDS | 3920154 | 213 | - | 0.483568 | |
| cspB | cold shock protein | RecName: Full=Cold shock-like protein CspB; Short=CSP-B; | chromosome | CDS | 1643053 | 216 | - | 0.351852 | |
| cspC | stress protein, member of the CspA-family | RecName: Full=Cold shock-like protein CspC; Short=CSP-C; | chromosome | CDS | 1908940 | 210 | - | 0.466667 | |
| cspD | cold shock protein homolog | RecName: Full=Cold shock-like protein CspD; Short=CSP-D; | chromosome | CDS | 922788 | 225 | - | 0.484444 | |
| cspE | DNA-binding transcriptional repressor | RecName: Full=Cold shock-like protein CspE; Short=CSP-E; | chromosome | CDS | 657714 | 210 | + | 0.438095 | |
| cspF | cold shock protein | RecName: Full=Cold shock-like protein CspF; Short=CSP-F; | chromosome | CDS | 1643569 | 213 | + | 0.483568 | |
| cspG | DNA-binding transcriptional regulator | RecName: Full=Cold shock-like protein CspG; Short=CPS-G; | chromosome | CDS | 1051883 | 213 | + | 0.441315 | |
| cspH | stress protein, member of the CspA-family | RecName: Full=Cold shock-like protein CspH; Short=CSP-H; | chromosome | CDS | 1051385 | 213 | - | 0.469484 | |
| cspI | cold shock protein | RecName: Full=Cold shock-like protein CspI; Short=CPS-I; | chromosome | CDS | 1640169 | 213 | - | 0.403756 | |
| cueR | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator CueR; AltName: Full=Copper efflux regulator; AltName: Full=Copper export regulator; | chromosome | CDS | 513217 | 408 | + | 0.585784 | |
| cusR | DNA-binding response regulator in two-component regulatory system with CusS | RecName: Full=Transcriptional regulatory protein CusR; | chromosome | CDS | 593983 | 684 | - | 0.538012 | |
| cynR | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional regulator CynR; AltName: Full=Cyn operon transcriptional activator; | chromosome | CDS | 357015 | 900 | - | 0.55 | |
| cysB | DNA-binding transcriptional dual regulator, O-acetyl-L-serine-binding | RecName: Full=HTH-type transcriptional regulator CysB; AltName: Full=Cys regulon transcriptional activator; | chromosome | CDS | 1335569 | 975 | + | 0.483077 | |
| cytR | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional repressor CytR; | chromosome | CDS | 3512225 | 1026 | + | 0.520468 | |
| dbpA | ATP-dependent RNA helicase specific for 23S rRNA | RecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; | chromosome | CDS | 1411225 | 1374 | + | 0.519651 | |
| dcuR | DNA-binding response regulator in two-component regulatory system with DcuS | RecName: Full=Transcriptional regulatory protein DcuR; | chromosome | CDS | 4353993 | 720 | - | 0.493056 | |
| deaD | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; AltName: Full=Translation factor W2; | chromosome | CDS | 3305826 | 1890 | - | 0.555556 | |
| deoR | DNA-binding transcriptional repressor | RecName: Full=Deoxyribose operon repressor; | chromosome | CDS | 882398 | 759 | - | 0.507246 | |
| dgoR | predicted DNA-binding transcriptional regulator | RecName: Full=Galactonate operon transcriptional repressor; | chromosome | CDS | 3765255 | 690 | + | 0.553623 | |
| dgsA | DNA-binding transcriptional repressor | RecName: Full=Protein mlc; AltName: Full=Making large colonies protein; | chromosome | CDS | 1669058 | 1221 | - | 0.522523 | |
| dicA | predicted regulator for DicB | RecName: Full=HTH-type transcriptional regulator DicA; AltName: Full=Repressor protein of division inhibition gene dicA; | chromosome | CDS | 1649648 | 408 | + | 0.436274 | |
| dinG | ATP-dependent DNA helicase | RecName: Full=Probable ATP-dependent helicase DinG; EC=3.6.4.12; AltName: Full=DNA-damage-inducible protein G; | chromosome | CDS | 833492 | 2151 | + | 0.540679 | |
| dsdC | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional regulator DsdC; AltName: Full=D-serine deaminase activator; | chromosome | CDS | 2482140 | 936 | - | 0.480769 | |
| ebgR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator EbgR; AltName: Full=Ebg operon repressor; | chromosome | CDS | 3220122 | 984 | + | 0.517276 | |
| envR | DNA-binding transcriptional regulator | RecName: Full=Probable acrEF/envCD operon repressor; | chromosome | CDS | 3412658 | 663 | - | 0.441931 | |
| envY | DNA-binding transcriptional activator | RecName: Full=Porin thermoregulatory protein EnvY; | chromosome | CDS | 585370 | 762 | - | 0.463255 | |
| evgA | DNA-binding response regulator in two-component regulatory system with EvgS | RecName: Full=Positive transcription regulator EvgA; | chromosome | CDS | 2489201 | 615 | + | 0.4 | |
| exuR | DNA-binding transcriptional repressor | RecName: Full=Exu regulon transcriptional regulator; | chromosome | CDS | 3245308 | 777 | + | 0.505791 | |
| fabR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional repressor FabR; | chromosome | CDS | 3474910 | 705 | - | 0.526241 | |
| fadR | DNA-binding transcriptional dual regulator | RecName: Full=Fatty acid metabolism regulator protein; | chromosome | CDS | 1236515 | 720 | + | 0.5125 | |
| feaR | DNA-binding transcriptional regulator | RecName: Full=Transcriptional activator FeaR; | chromosome | CDS | 1448092 | 906 | - | 0.485651 | |
| fecI | RNA polymerase, sigma 19 factor | RecName: Full=Probable RNA polymerase sigma factor FecI; | chromosome | CDS | 4522394 | 522 | - | 0.545977 | |
| fhlA | DNA-binding transcriptional activator | RecName: Full=Formate hydrogenlyase transcriptional activator; | chromosome | CDS | 2852994 | 2079 | + | 0.525734 | |
| fimZ | predicted DNA-binding transcriptional regulator | RecName: Full=Fimbriae Z protein; | chromosome | CDS | 563071 | 633 | - | 0.366509 | |
| fis | global DNA-binding transcriptional dual regulator | RecName: Full=DNA-binding protein Fis; AltName: Full=Factor-for-inversion stimulation protein; AltName: Full=Hin recombinational enhancer-binding protein; | chromosome | CDS | 3411126 | 297 | + | 0.47138 | |
| flgM | anti-sigma factor for FliA (sigma 28) | RecName: Full=Negative regulator of flagellin synthesis; AltName: Full=Anti-sigma-28 factor; | chromosome | CDS | 1131412 | 294 | - | 0.527211 | |
| fliA | RNA polymerase, sigma 28 (sigma F) factor | RecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-27; AltName: Full=Sigma-28; | chromosome | CDS | 2003207 | 720 | - | 0.541667 | |
| frlR | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator FrlR; | chromosome | CDS | 4135633 | 732 | - | 0.509563 | |
| fruR | DNA-binding transcriptional dual regulator | RecName: Full=Catabolite repressor/activator; AltName: Full=Fructose repressor; | chromosome | CDS | 88028 | 1005 | + | 0.549254 | |
| fucR | DNA-binding transcriptional activator | RecName: Full=L-fucose operon activator; | chromosome | CDS | 2938024 | 732 | + | 0.48224 | |
| gadE | DNA-binding transcriptional activator | RecName: Full=Transcriptional regulator GadE; | chromosome | CDS | 3981522 | 528 | - | 0.329545 | |
| gadW | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator GadW; | chromosome | CDS | 3975797 | 729 | + | 0.418381 | |
| gadX | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional regulator GadX; | chromosome | CDS | 3974605 | 825 | + | 0.409697 | |
| galR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator GalR; AltName: Full=Galactose operon repressor; | chromosome | CDS | 2975255 | 1032 | + | 0.527132 | |
| galS | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator GalS; AltName: Full=Mgl repressor and galactose ultrainduction factor; | chromosome | CDS | 2243962 | 1041 | - | 0.524496 | |
| gcvA | DNA-binding transcriptional dual regulator | RecName: Full=Glycine cleavage system transcriptional activator; AltName: Full=Gcv operon activator; | chromosome | CDS | 2940306 | 918 | - | 0.491285 | |
| glcC | DNA-binding transcriptional dual regulator, glycolate-binding | RecName: Full=Glc operon transcriptional activator; | chromosome | CDS | 3126928 | 765 | + | 0.550327 | |
| glpR | DNA-binding transcriptional repressor | RecName: Full=Glycerol-3-phosphate regulon repressor; | chromosome | CDS | 4079810 | 759 | + | 0.546772 | |
| gntR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator GntR; AltName: Full=Gluconate utilization system GNT-I transcriptional repressor; | chromosome | CDS | 4061689 | 996 | + | 0.544177 | |
| greA | transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 3328094 | 477 | - | 0.484277 | |
| greB | transcription elongation factor | RecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; | chromosome | CDS | 4103128 | 477 | - | 0.498952 | |
| gutM | DNA-binding transcriptional activator | RecName: Full=Glucitol operon activator protein; | chromosome | CDS | 2827277 | 360 | + | 0.55 | |
| hcaR | DNA-binding transcriptional regulator | RecName: Full=Hca operon transcriptional activator HcaR; | chromosome | CDS | 2666662 | 891 | - | 0.498316 | |
| hdfR | DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator HdfR; AltName: Full=H-NS-dependent flhDC regulator; | chromosome | CDS | 3688714 | 840 | + | 0.484524 | |
| hepA | RNA polymerase-associated helicase protein | RecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; | chromosome | CDS | 60358 | 2907 | - | 0.54902 | |
| hipB | DNA-binding transcriptional regulator | RecName: Full=Antitoxin HipB; | chromosome | CDS | 1593890 | 267 | - | 0.445693 | |
| hyfR | DNA-binding transcriptional activator, formate sensing | chromosome | CDS | 2610556 | 2013 | + | 0.52608 | ||
| hypB | GTP hydrolase involved in nickel liganding into hydrogenases | RecName: Full=Hydrogenase isoenzymes nickel incorporation protein HypB; | chromosome | CDS | 2849657 | 873 | + | 0.552119 | |
| iclR | DNA-binding transcriptional repressor | RecName: Full=Acetate operon repressor; | chromosome | CDS | 4226394 | 825 | - | 0.541818 | |
| idnR | DNA-binding transcriptional repressor, 5-gluconate-binding | RecName: Full=HTH-type transcriptional regulator IdnR; AltName: Full=L-idonate regulatory protein; | chromosome | CDS | 4494821 | 999 | - | 0.47047 | |
| ilvY | DNA-binding transcriptional dual regulator | RecName: Full=HTH-type transcriptional regulator IlvY; | chromosome | CDS | 3678861 | 894 | + | 0.576063 | |
| iscR | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator IscR; | chromosome | CDS | 2660299 | 489 | - | 0.535787 | |
| kdgR | predicted DNA-binding transcriptional regulator | RecName: Full=Transcriptional regulator KdgR; | chromosome | CDS | 1911022 | 792 | - | 0.497475 | |
| kdpE | DNA-binding response regulator in two-component regulatory system with KdpD | RecName: Full=KDP operon transcriptional regulatory protein KdpE; | chromosome | CDS | 721478 | 678 | - | 0.566372 | |
| lacI | DNA-binding transcriptional repressor | RecName: Full=Lactose operon repressor; | chromosome | CDS | 365652 | 1083 | - | 0.56325 | |
| leuO | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator LeuO; | chromosome | CDS | 84368 | 945 | + | 0.457143 | |
| lexA | DNA-binding transcriptional repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 4260705 | 609 | + | 0.518883 | |
| lldR | DNA-binding transcriptional repressor | RecName: Full=Putative L-lactate dehydrogenase operon regulatory protein; | chromosome | CDS | 3860585 | 777 | - | 0.540541 | |
| lrhA | DNA-binding transcriptional repressor | RecName: Full=Probable HTH-type transcriptional regulator LrhA; | chromosome | CDS | 2410373 | 939 | - | 0.497338 | |
| lrp | DNA-binding transcriptional dual regulator, leucine-binding | RecName: Full=Leucine-responsive regulatory protein; | chromosome | CDS | 933017 | 495 | + | 0.478788 | |
| lysR | DNA-binding transcriptional dual regulator | RecName: Full=Transcriptional activator protein LysR; | chromosome | CDS | 2977677 | 936 | + | 0.534188 | |
| mak | manno(fructo)kinase | RecName: Full=Fructokinase; EC=2.7.1.4; AltName: Full=D-fructose kinase; AltName: Full=Manno(fructo)kinase; | chromosome | CDS | 409368 | 909 | + | 0.556656 | |
| malI | DNA-binding transcriptional repressor | RecName: Full=Maltose regulon regulatory protein MalI; | chromosome | CDS | 1699866 | 1029 | - | 0.539359 | |
| malT | DNA-binding transcriptional activator, maltotriose-ATP-binding | RecName: Full=HTH-type transcriptional regulator MalT; AltName: Full=ATP-dependent transcriptional activator MalT; | chromosome | CDS | 4084626 | 2706 | - | 0.54102 | |
| marA | DNA-binding transcriptional dual regulator | RecName: Full=Multiple antibiotic resistance protein MarA; | chromosome | CDS | 1621288 | 384 | + | 0.458333 | |
| marR | DNA-binding transcriptional repressor | RecName: Full=Multiple antibiotic resistance protein MarR; | chromosome | CDS | 1620834 | 435 | + | 0.494253 | |
| melR | DNA-binding transcriptional dual regulator | RecName: Full=Melibiose operon regulatory protein; | chromosome | CDS | 4345398 | 909 | - | 0.50275 | |
| metJ | DNA-binding transcriptional repressor, S-adenosylmethionine-binding | RecName: Full=Met repressor; AltName: Full=Met regulon regulatory protein MetJ; | chromosome | CDS | 3508286 | 318 | + | 0.518868 | |
| metR | DNA-binding transcriptional activator, homocysteine-binding | RecName: Full=HTH-type transcriptional regulator MetR; | chromosome | CDS | 3623865 | 954 | + | 0.562893 | |
| mfd | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1172095 | 3447 | - | 0.547723 | |
| mhpR | DNA-binding transcriptional activator, 3HPP-binding | RecName: Full=Mhp operon transcriptional activator; | chromosome | CDS | 366811 | 948 | - | 0.53692 | |
| mlrA | DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator MlrA; AltName: Full=MerR-like regulator A; | chromosome | CDS | 2218200 | 732 | + | 0.528689 | |
| mngR | DNA-binding transcriptional dual regulator, fatty-acyl-binding | RecName: Full=Mannosyl-D-glycerate transport/metabolism system repressor MngR; AltName: Full=Fatty acyl-responsive regulator; AltName: Full=Protein P30; | chromosome | CDS | 765575 | 723 | - | 0.481328 | |
| mntR | transcriptional regulator of mntH | RecName: Full=Transcriptional regulator MntR; AltName: Full=Manganese transport regulator; | chromosome | CDS | 853605 | 468 | + | 0.540598 | |
| mprA | DNA-binding transcriptional regulator | RecName: Full=Transcriptional repressor MprA; AltName: Full=Protein EmrR; | chromosome | CDS | 2809426 | 531 | + | 0.491525 | |
| mtlR | DNA-binding transcriptional repressor | RecName: Full=Mannitol operon repressor; AltName: Full=Mannitol repressor protein; | chromosome | CDS | 3864256 | 588 | - | 0.510204 | |
| nac | DNA-binding transcriptional dual regulator | RecName: Full=Nitrogen assimilation regulatory protein nac; AltName: Full=Nitrogen assimilation control protein; | chromosome | CDS | 2063153 | 918 | - | 0.481481 | |
| nagC | DNA-binding transcriptional dual regulator | RecName: Full=N-acetylglucosamine repressor; | chromosome | CDS | 700796 | 1221 | - | 0.529894 | |
| nanK | predicted N-acetylmannosamine kinase | RecName: Full=N-acetylmannosamine kinase; EC=2.7.1.60; AltName: Full=ManNAc kinase; AltName: Full=N-acetyl-D-mannosamine kinase; | chromosome | CDS | 3369330 | 876 | - | 0.584475 | |
| nanR | DNA-binding transcriptional dual regulator | RecName: Full=Transcriptional regulator NanR; | chromosome | CDS | 3373553 | 792 | - | 0.522727 | |
| narL | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) | RecName: Full=Nitrate/nitrite response regulator protein NarL; | chromosome | CDS | 1276756 | 651 | - | 0.517665 | |
| narP | DNA-binding response regulator in two-component regulatory system with NarQ or NarX | RecName: Full=Nitrate/nitrite response regulator protein NarP; | chromosome | CDS | 2293834 | 648 | + | 0.524691 | |
| nhaR | DNA-binding transcriptional activator | RecName: Full=Transcriptional activator protein NhaR; AltName: Full=Na(+)/H(+) antiporter regulatory protein; | chromosome | CDS | 18715 | 906 | + | 0.474614 | |
| nikR | DNA-binding transcriptional regulator, Ni-binding | RecName: Full=Nickel-responsive regulator; | chromosome | CDS | 4021426 | 402 | - | 0.572139 | |
| norR | DNA-binding transcriptional activator | RecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; | chromosome | CDS | 2829431 | 1515 | - | 0.568317 | |
| nusA | transcription termination/antitermination L factor | RecName: Full=Transcription termination/antitermination protein NusA; AltName: Full=N utilization substance protein A; AltName: Full=Transcription termination/antitermination L factor; | chromosome | CDS | 3315894 | 1488 | - | 0.527554 | |
| nusB | transcription antitermination protein | RecName: Full=N utilization substance protein B; Short=Protein NusB; | chromosome | CDS | 434361 | 420 | + | 0.538095 | |
| nusG | transcription termination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 3458393 | 546 | - | 0.516484 | |
| ompR | DNA-binding response regulator in two-component regulatory system with EnvZ | RecName: Full=Transcriptional regulatory protein OmpR; | chromosome | CDS | 4103832 | 720 | + | 0.551389 | |
| oxyR | DNA-binding transcriptional dual regulator | RecName: Full=Hydrogen peroxide-inducible genes activator; AltName: Full=Morphology and auto-aggregation control protein; | chromosome | CDS | 3477274 | 918 | - | 0.554466 | |
| paaX | DNA-binding transcriptional regulator, aryl-CoA responsive | RecName: Full=Transcriptional repressor PaaX; | chromosome | CDS | 1465253 | 951 | + | 0.50368 | |
| pdhR | DNA-binding transcriptional dual regulator | RecName: Full=Pyruvate dehydrogenase complex repressor; | chromosome | CDS | 122092 | 765 | + | 0.55817 | |
| perR | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator PerR; AltName: Full=Peroxide resistance protein PerR; | chromosome | CDS | 268513 | 894 | - | 0.479866 | |
| phnF | transcriptional regulator of phosphonate uptake and biodegradation | RecName: Full=Probable transcriptional regulator PhnF; | chromosome | CDS | 4326375 | 726 | - | 0.618457 | |
| phnO | predicted acyltransferase with acyl-CoA N-acyltransferase domain | RecName: Full=Protein PhnO; EC=2.3.1.-; | chromosome | CDS | 4319782 | 435 | - | 0.57931 | |
| phoB | DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) | RecName: Full=Phosphate regulon transcriptional regulatory protein PhoB; | chromosome | CDS | 416366 | 690 | + | 0.544928 | |
| phoP | DNA-binding response regulator in two-component regulatory system with PhoQ | RecName: Full=Transcriptional regulatory protein PhoP; | chromosome | CDS | 1191353 | 672 | - | 0.477679 | |
| prpR | DNA-binding transcriptional regulator | RecName: Full=Propionate catabolism operon regulatory protein; | chromosome | CDS | 346081 | 1587 | - | 0.551985 | |
| pspA | regulatory protein for phage-shock-protein operon | RecName: Full=Phage shock protein A; | chromosome | CDS | 1369793 | 669 | + | 0.493274 | |
| pspC | transcriptional activator | RecName: Full=Phage shock protein C; | chromosome | CDS | 1370739 | 360 | + | 0.502778 | |
| pspF | DNA-binding transcriptional activator | RecName: Full=Psp operon transcriptional activator; AltName: Full=Phage shock protein F; | chromosome | CDS | 1368649 | 978 | - | 0.517382 | |
| purR | DNA-binding transcriptional repressor, hypoxanthine-binding | RecName: Full=HTH-type transcriptional repressor PurR; AltName: Full=Pur regulon repressor; AltName: Full=Purine nucleotide synthesis repressor; | chromosome | CDS | 1739558 | 1026 | + | 0.538012 | |
| puuR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator PuuR; | chromosome | CDS | 1363625 | 558 | + | 0.508961 | |
| qseB | DNA-binding response regulator in two-component regulatory system with QseC | RecName: Full=Transcriptional regulatory protein QseB; | chromosome | CDS | 3168484 | 660 | + | 0.516667 | |
| rbsR | DNA-binding transcriptional repressor | RecName: Full=Ribose operon repressor; | chromosome | CDS | 3697462 | 993 | - | 0.506546 | |
| rcsA | DNA-binding transcriptional co-regulator with RcsB | RecName: Full=Transcriptional regulatory protein RcsA; AltName: Full=Colanic acid capsular biosynthesis activation protein A; | chromosome | CDS | 2026105 | 624 | + | 0.38141 | |
| rcsB | DNA-binding response regulator in two-component regulatory system with RcsC and YojN | RecName: Full=Transcriptional regulatory protein RcsB; AltName: Full=Capsular synthesis regulator component B; | chromosome | CDS | 2319511 | 651 | + | 0.477727 | |
| recG | ATP-dependent DNA helicase | RecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; | chromosome | CDS | 3813124 | 2082 | - | 0.572046 | |
| relA | (p)ppGpp synthetase I/GTP pyrophosphokinase | RecName: Full=GTP pyrophosphokinase; EC=2.7.6.5; AltName: Full=(p)ppGpp synthase; AltName: Full=ATP:GTP 3-pyrophosphotransferase; AltName: Full=ppGpp synthase I; | chromosome | CDS | 2910073 | 2235 | - | 0.537808 | |
| rfaH | DNA-binding transcriptional antiterminator | RecName: Full=Transcription antitermination protein RfaH; | chromosome | CDS | 3611860 | 489 | + | 0.496933 | |
| rfaP | kinase that phosphorylates core heptose of lipopolysaccharide | RecName: Full=Lipopolysaccharide core heptose(I) kinase RfaP; EC=2.7.1.-; | chromosome | CDS | 3834465 | 798 | + | 0.433584 | |
| rfaZ | lipopolysaccharide core biosynthesis protein | RecName: Full=Lipopolysaccharide core biosynthesis protein RfaZ; | chromosome | CDS | 3840219 | 852 | + | 0.325117 | |
| rhaR | DNA-binding transcriptional activator, L-rhamnose-binding | RecName: Full=HTH-type transcriptional activator RhaR; AltName: Full=L-rhamnose operon transcriptional activator RhaR; | chromosome | CDS | 3537187 | 939 | - | 0.497338 | |
| rhaS | DNA-binding transcriptional activator, L-rhamnose-binding | RecName: Full=HTH-type transcriptional activator RhaS; AltName: Full=L-rhamnose operon regulatory protein RhaS; | chromosome | CDS | 3538109 | 837 | - | 0.518519 | |
| rhlB | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 3671051 | 1266 | + | 0.525276 | |
| rhlE | RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 831294 | 1365 | + | 0.567033 | |
| rho | transcription termination factor | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 3669005 | 1260 | - | 0.503175 | |
| rnb | ribonuclease II | RecName: Full=Exoribonuclease 2; EC=3.1.13.1; AltName: Full=Exoribonuclease II; Short=RNase II; Short=Ribonuclease II; | chromosome | CDS | 1348692 | 1935 | - | 0.5323 | |
| rnc | RNase III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 2702039 | 681 | - | 0.506608 | |
| rnk | regulator of nucleoside diphosphate kinase | RecName: Full=Regulator of nucleoside diphosphate kinase; | chromosome | CDS | 642780 | 411 | - | 0.547445 | |
| rnr | exoribonuclease R, RNase R | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; AltName: Full=Protein VacB; | chromosome | CDS | 4411334 | 2442 | + | 0.552826 | |
| rob | DNA-binding transcriptional activator | RecName: Full=Right origin-binding protein; | chromosome | CDS | 4639121 | 870 | - | 0.532184 | |
| rpiR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator RpiR; AltName: Full=Als operon repressor; | chromosome | CDS | 4316779 | 891 | - | 0.474747 | |
| rpoA | RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 4199387 | 990 | + | 0.522222 | |
| rpoB | RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 3451408 | 4029 | - | 0.526185 | |
| rpoC | RNA polymerase, beta prime subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 3447108 | 4224 | - | 0.538352 | |
| rpoD | RNA polymerase, sigma 70 (sigma D) factor | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 3211703 | 1842 | + | 0.529859 | |
| rpoE | RNA polymerase, sigma 24 (sigma E) factor | RecName: Full=ECF RNA polymerase sigma-E factor; AltName: Full=RNA polymerase sigma-E factor; AltName: Full=Sigma-24; | chromosome | CDS | 2708093 | 576 | - | 0.487847 | |
| rpoH | RNA polymerase, sigma 32 (sigma H) factor | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=Heat shock regulatory protein F33.4; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 4039632 | 855 | + | 0.54152 | |
| rpoN | RNA polymerase, sigma 54 (sigma N) factor | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 3344572 | 1434 | + | 0.528591 | |
| rpoS | RNA polymerase, sigma S (sigma 38) factor | RecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; | chromosome | CDS | 2865215 | 876 | - | 0.537671 | |
| rpoZ | RNA polymerase, omega subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 3818034 | 276 | - | 0.532609 | |
| rsd | stationary phase protein, binds sigma 70 RNA polymerase subunit | RecName: Full=Regulator of sigma D; | chromosome | CDS | 3439873 | 477 | + | 0.490566 | |
| rstA | DNA-bindng response regulator in two-component regulatory system with RstB | RecName: Full=Transcriptional regulatory protein RstA; | chromosome | CDS | 1683864 | 729 | + | 0.491084 | |
| rtcR | sigma 54-dependent transcriptional regulator of rtcBA expression | RecName: Full=Transcriptional regulatory protein RtcR; | chromosome | CDS | 4080550 | 1599 | - | 0.557849 | |
| sdiA | DNA-binding transcriptional activator | RecName: Full=Regulatory protein SdiA; | chromosome | CDS | 1998247 | 723 | - | 0.467497 | |
| sfsB | DNA-binding transcriptional regulator | RecName: Full=Sugar fermentation stimulation protein B; AltName: Full=Ner-like protein; | chromosome | CDS | 3334764 | 279 | + | 0.501792 | |
| sgcR | predicted DNA-binding transcriptional regulator | RecName: Full=Putative sgc region transcriptional regulator; | chromosome | CDS | 4530786 | 783 | - | 0.496807 | |
| slyA | DNA-binding transcriptional activator | RecName: Full=Transcriptional regulator SlyA; | chromosome | CDS | 1722104 | 435 | - | 0.482759 | |
| sohA | predicted regulator | RecName: Full=Antitoxin PrlF; AltName: Full=HtrA suppressor protein SohA; | chromosome | CDS | 3276857 | 336 | + | 0.47619 | |
| soxR | DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing | RecName: Full=Redox-sensitive transcriptional activator SoxR; | chromosome | CDS | 4281059 | 465 | + | 0.52043 | |
| soxS | DNA-binding transcriptional dual regulator | RecName: Full=Regulatory protein SoxS; | chromosome | CDS | 4280650 | 324 | - | 0.509259 | |
| spoT | bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | RecName: Full=Bifunctional (p)ppGpp synthase/hydrolase SpoT; Includes: RecName: Full=GTP pyrophosphokinase; EC=2.7.6.5; AltName: Full=(p)ppGpp synthase; AltName: Full=ATP:GTP 3-pyrophosphotransferase; AltName: Full=Stringent response-like protein; AltName: Full=ppGpp synthase II; Includes: RecName: Full=Guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase; EC=3.1.7.2; AltName: Full=Penta-phosphate guanosine-3-pyrophosphohydrolase; Short=(ppGpp)ase; | chromosome | CDS | 3815907 | 2109 | - | 0.537221 | |
| srlR | DNA-bindng transcriptional repressor | RecName: Full=Glucitol operon repressor; | chromosome | CDS | 2827703 | 774 | + | 0.488372 | |
| srmB | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; | chromosome | CDS | 2711552 | 1335 | + | 0.547566 | |
| tdcA | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator TdcA; AltName: Full=Tdc operon transcriptional activator; | chromosome | CDS | 3265982 | 939 | - | 0.421725 | |
| torR | DNA-binding response regulator in two-component regulatory system with TorS | RecName: Full=TorCAD operon transcriptional regulatory protein TorR; | chromosome | CDS | 1057684 | 693 | - | 0.52381 | |
| treR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator TreR; AltName: Full=Trehalose operon repressor; | chromosome | CDS | 4470979 | 948 | - | 0.537975 | |
| trpR | DNA-binding transcriptional repressor, tryptophan-binding | RecName: Full=Trp operon repressor; | chromosome | CDS | 4637440 | 327 | + | 0.541284 | |
| ttk | division inhibitor | RecName: Full=Nucleoid occlusion factor SlmA; AltName: Full=Protein Ttk; AltName: Full=Synthetically lethal with a defective Min system protein A; | chromosome | CDS | 3825325 | 597 | - | 0.530988 | |
| tyrR | DNA-binding transcriptional dual regulator, tyrosine-binding | RecName: Full=Transcriptional regulatory protein TyrR; | chromosome | CDS | 1388434 | 1542 | + | 0.521401 | |
| uhpA | DNA-binding response regulator in two-component regulatory system wtih UhpB | RecName: Full=Transcriptional regulatory protein UhpA; | chromosome | CDS | 3789689 | 591 | + | 0.588832 | |
| uidR | DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator UidR; AltName: Full=Gus operon repressor; AltName: Full=Uid operon repressor; | chromosome | CDS | 1698176 | 591 | - | 0.509306 | |
| ulaR | DNA-binding transriptional dual regulator | RecName: Full=HTH-type transcriptional regulator UlaR; | chromosome | CDS | 4422378 | 756 | - | 0.506614 | |
| umuD | DNA polymerase V, subunit D | RecName: Full=Protein UmuD; EC=3.4.21.-; Contains: RecName: Full=Protein UmuD; | chromosome | CDS | 1232344 | 420 | + | 0.480952 | |
| uvrY | DNA-binding response regulator in two-component regulatory system with BarA | RecName: Full=Response regulator UvrY; | chromosome | CDS | 1996840 | 657 | - | 0.497717 | |
| uxuR | DNA-binding transcriptional repressor | RecName: Full=Uxu operon transcriptional regulator; | chromosome | CDS | 4559256 | 774 | + | 0.536176 | |
| xapR | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator XapR; AltName: Full=Xanthosine operon regulatory protein; | chromosome | CDS | 2527039 | 885 | - | 0.505085 | |
| xylR | DNA-binding transcriptional activator, xylose-binding | RecName: Full=Xylose operon regulatory protein; | chromosome | CDS | 3904258 | 1179 | - | 0.487701 | |
| yafC | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YafC; | chromosome | CDS | 229967 | 915 | - | 0.496175 | |
| yafP | predicted acyltransferase with acyl-CoA N-acyltransferase domain | RecName: Full=Uncharacterized N-acetyltransferase YafP; EC=2.3.1.-; | chromosome | CDS | 252709 | 453 | + | 0.432671 | |
| yafY | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized lipoprotein YafY; Flags: Precursor; | chromosome | CDS | 265334 | 858 | - | 0.536131 | |
| yagI | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YagI; | chromosome | CDS | 287628 | 759 | - | 0.632411 | |
| yagP | predicted transcriptional regulator | RecName: Full=Uncharacterized protein YagP; | chromosome | CDS | 296605 | 411 | - | 0.525547 | |
| yahA | predicted DNA-binding transcriptional regulator | RecName: Full=Cyclic di-GMP phosphodiesterase YahA; EC=3.1.4.-; | chromosome | CDS | 331595 | 1089 | + | 0.459137 | |
| yahB | predicted DNA-bindng transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YahB; | chromosome | CDS | 332725 | 933 | - | 0.493033 | |
| yaiV | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized protein YaiV; | chromosome | CDS | 393685 | 669 | + | 0.403587 | |
| ybaD | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 432226 | 450 | + | 0.513333 | |
| ybaO | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YbaO; | chromosome | CDS | 467607 | 459 | + | 0.518519 | |
| ybbS | transcriptional activator of the allD operon | RecName: Full=HTH-type transcriptional activator AllS; | chromosome | CDS | 530519 | 927 | - | 0.524272 | |
| ybcM | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YbcM; | chromosome | CDS | 570677 | 798 | + | 0.362155 | |
| ybdM | conserved hypothetical protein | RecName: Full=Uncharacterized protein YbdM; | chromosome | CDS | 633970 | 630 | - | 0.468254 | |
| ybdO | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YbdO; | chromosome | CDS | 635939 | 903 | - | 0.386489 | |
| ybeF | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YbeF; | chromosome | CDS | 660847 | 954 | - | 0.448637 | |
| ybhD | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YbhD; | chromosome | CDS | 800044 | 1017 | - | 0.445428 | |
| ycaN | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YcaN; | chromosome | CDS | 949082 | 909 | - | 0.466447 | |
| yccR | conserved hypothetical protein | RecName: Full=Protein Sxy; | chromosome | CDS | 1021560 | 630 | + | 0.480952 | |
| ycdC | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator RutR; AltName: Full=Rut operon repressor; | chromosome | CDS | 1074664 | 639 | + | 0.513302 | |
| ycfQ | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional repressor ComR; AltName: Full=Copper outer membrane regulator; | chromosome | CDS | 1169777 | 633 | - | 0.511848 | |
| ycfX | predicted DNA-binding transcriptional regulator | RecName: Full=N-acetyl-D-glucosamine kinase; EC=2.7.1.59; AltName: Full=GlcNAc kinase; | chromosome | CDS | 1180170 | 912 | + | 0.527412 | |
| ycgE | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional repressor YcgE; | chromosome | CDS | 1214905 | 732 | - | 0.487705 | |
| yciT | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YciT; | chromosome | CDS | 1345311 | 750 | - | 0.488 | |
| ycjW | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YcjW; | chromosome | CDS | 1384677 | 999 | - | 0.454454 | |
| ycjZ | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator PgrR; AltName: Full=Regulator of PG recycling; | chromosome | CDS | 1393705 | 900 | + | 0.465556 | |
| ydcI | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdcI; | chromosome | CDS | 1495862 | 924 | - | 0.505411 | |
| ydcN | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdcN; | chromosome | CDS | 1507886 | 537 | + | 0.493482 | |
| ydcR | fused predicted DNA-binding transcriptional regulator and predicted amino transferase | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdcR; | chromosome | CDS | 1511717 | 1407 | + | 0.513859 | |
| ydeO | predicted DNA-binding transcriptional acfivator | RecName: Full=HTH-type transcriptional regulator YdeO; | chromosome | CDS | 1584640 | 762 | - | 0.395013 | |
| ydeW | predicted DNA-binding transcriptional regulator | RecName: Full=Transcriptional regulator LsrR; | chromosome | CDS | 1602002 | 954 | - | 0.507338 | |
| ydfH | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdfH; | chromosome | CDS | 1630066 | 687 | + | 0.500728 | |
| ydhB | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdhB; | chromosome | CDS | 1740580 | 933 | - | 0.536977 | |
| ydhM | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional repressor NemR; | chromosome | CDS | 1727821 | 516 | + | 0.51938 | |
| ydiP | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdiP; | chromosome | CDS | 1780104 | 912 | - | 0.419956 | |
| ydiZ | hypothetical protein | RecName: Full=Uncharacterized protein YdiZ; | chromosome | CDS | 1809114 | 291 | + | 0.43299 | |
| ydjF | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YdjF; | chromosome | CDS | 1855810 | 759 | - | 0.422925 | |
| yeaM | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YeaM; | chromosome | CDS | 1876469 | 822 | - | 0.498783 | |
| yeaT | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator DmlR; AltName: Full=D-malate degradation protein R; | chromosome | CDS | 1882600 | 924 | - | 0.52381 | |
| yebK | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator HexR; AltName: Full=Hex regulon repressor; | chromosome | CDS | 1938366 | 870 | + | 0.489655 | |
| yedL | predicted acyltransferase | RecName: Full=Uncharacterized N-acetyltransferase YedL; EC=2.3.1.-; | chromosome | CDS | 2012737 | 480 | + | 0.470833 | |
| yedW | predicted DNA-binding response regulator in two-component system withYedV | RecName: Full=Probable transcriptional regulatory protein YedW; | chromosome | CDS | 2040289 | 672 | - | 0.447917 | |
| yeeY | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YeeY; | chromosome | CDS | 2089466 | 930 | - | 0.504301 | |
| yegW | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YegW; | chromosome | CDS | 2185369 | 747 | - | 0.514056 | |
| yehT | predicted response regulator in two-component system withYehU | RecName: Full=Transcriptional regulatory protein YehT; | chromosome | CDS | 2215577 | 720 | - | 0.493056 | |
| yeiE | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YeiE; | chromosome | CDS | 2252071 | 882 | - | 0.537415 | |
| yejH | predicted ATP-dependet helicase | RecName: Full=Uncharacterized protein YejH; | chromosome | CDS | 2283966 | 1761 | + | 0.531516 | |
| yfaH | conserved hypothetical protein | RecName: Full=Putative uncharacterized protein YfaH; | chromosome | CDS | 2354357 | 207 | + | 0.415459 | |
| yfaX | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator RhmR; | chromosome | CDS | 2366099 | 783 | - | 0.509579 | |
| yfeD | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized protein YfeD; | chromosome | CDS | 2524259 | 393 | + | 0.46056 | |
| yfeG | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator eutR; AltName: Full=Ethanolamine operon regulatory protein; | chromosome | CDS | 2559576 | 1053 | - | 0.533713 | |
| yfeR | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YfeR; | chromosome | CDS | 2531376 | 927 | - | 0.539374 | |
| yfeT | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator MurR; AltName: Full=MurPQ operon repressor; | chromosome | CDS | 2550198 | 858 | - | 0.516317 | |
| yfhH | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YfhH; | chromosome | CDS | 2697415 | 849 | + | 0.517079 | |
| yfiE | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YfiE; | chromosome | CDS | 2713095 | 882 | - | 0.496599 | |
| yfjR | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YfjR; | chromosome | CDS | 2768359 | 702 | + | 0.57265 | |
| ygaV | predicted DNA-binding transcriptional regulator | RecName: Full=Probable HTH-type transcriptional regulator YgaV; | chromosome | CDS | 2795867 | 300 | + | 0.53 | |
| ygbI | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YgbI; | chromosome | CDS | 2859123 | 798 | - | 0.513784 | |
| ygcP | predicted anti-terminator regulatory protein | RecName: Full=Uncharacterized protein YgcP; | chromosome | CDS | 2892852 | 576 | + | 0.465278 | |
| ygeH | predictedtranscriptional regulator | RecName: Full=Uncharacterized protein YgeH; | chromosome | CDS | 2990750 | 1377 | + | 0.347131 | |
| ygeK | predicted DNA-binding transcriptional regulator | RecName: Full=Putative uncharacterized response regulatory protein YgeK; | chromosome | CDS | 2993116 | 444 | - | 0.355856 | |
| ygeL | hypothetical protein | RecName: Full=Putative uncharacterized response regulatory protein YgeK; | chromosome | CDS | 2993593 | 156 | - | 0.365385 | |
| ygeV | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized sigma-54-dependent transcriptional regulator YgeV; | chromosome | CDS | 3002664 | 1779 | - | 0.45756 | |
| ygfI | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YgfI; | chromosome | CDS | 3064933 | 897 | - | 0.445931 | |
| yggD | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized protein YggD; | chromosome | CDS | 3073342 | 510 | - | 0.480392 | |
| ygiP | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional activator TtdR; | chromosome | CDS | 3203980 | 933 | - | 0.496249 | |
| ygiT | predicted DNA-binding transcriptional regulator | RecName: Full=Antitoxin MqsA; | chromosome | CDS | 3166507 | 396 | - | 0.421717 | |
| ygjM | predicted DNA-binding transcriptional regulator | RecName: Full=Antitoxin HigA; | chromosome | CDS | 3232384 | 417 | - | 0.484412 | |
| yhaJ | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YhaJ; | chromosome | CDS | 3251974 | 897 | - | 0.552954 | |
| yhcO | predicted barnase inhibitor | RecName: Full=Uncharacterized protein YhcO; | chromosome | CDS | 3385712 | 273 | - | 0.428571 | |
| yhhY | predicted acetyltransferase | RecName: Full=Uncharacterized N-acetyltransferase YhhY; EC=2.3.1.-; | chromosome | CDS | 4058789 | 489 | - | 0.517382 | |
| yhjB | predicted DNA-binding response regulator in two-component regulatory system | RecName: Full=Putative HTH-type transcriptional regulator YhjB; | chromosome | CDS | 3968521 | 603 | + | 0.477612 | |
| yhjC | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YhjC; | chromosome | CDS | 3967102 | 972 | - | 0.520576 | |
| yiaC | predicted acyltransferase with acyl-CoA N-acyltransferase domain | RecName: Full=Uncharacterized N-acetyltransferase YiaC; EC=2.3.1.-; | chromosome | CDS | 3926323 | 441 | - | 0.521542 | |
| yiaG | predicted transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YiaG; | chromosome | CDS | 3920647 | 291 | - | 0.439863 | |
| yiaJ | predicted DNA-binding transcriptional repressor | RecName: Full=HTH-type transcriptional regulator YiaJ; AltName: Full=YiaKLMNOPQRS operon repressor; Short=YiaK-S operon repressor; | chromosome | CDS | 3897883 | 849 | + | 0.52179 | |
| yiaU | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YiaU; | chromosome | CDS | 3887449 | 975 | - | 0.476923 | |
| yidL | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YidL; | chromosome | CDS | 3779239 | 924 | - | 0.435065 | |
| yidP | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YidP; | chromosome | CDS | 3775800 | 717 | - | 0.51325 | |
| yidZ | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator YidZ; | chromosome | CDS | 3744293 | 960 | - | 0.521875 | |
| yieP | predicted transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YieP; | chromosome | CDS | 3695354 | 693 | + | 0.493506 | |
| yihL | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YihL; | chromosome | CDS | 3575524 | 711 | - | 0.490858 | |
| yihW | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YihW; | chromosome | CDS | 3561227 | 786 | - | 0.524173 | |
| yiiD | predicted acetyltransferase | RecName: Full=Uncharacterized protein YiiD; | chromosome | CDS | 3558243 | 990 | - | 0.550505 | |
| yijO | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YijO; | chromosome | CDS | 3488364 | 852 | + | 0.530516 | |
| yjaB | predicted acetyltransferase | RecName: Full=Uncharacterized N-acetyltransferase YjaB; EC=2.3.1.-; | chromosome | CDS | 4217270 | 444 | - | 0.545045 | |
| yjdC | predicted transcriptional regulator | RecName: Full=HTH-type transcriptional regulator YjdC; | chromosome | CDS | 4367411 | 576 | - | 0.53125 | |
| yjeB | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional repressor NsrR; | chromosome | CDS | 4410870 | 426 | + | 0.483568 | |
| yjfJ | predicted transcriptional regulator effector protein | RecName: Full=Uncharacterized protein YjfJ; Flags: Precursor; | chromosome | CDS | 4415233 | 699 | + | 0.513591 | |
| yjgJ | predicted transcriptional regulator | RecName: Full=HTH-type transcriptional repressor BdcR; | chromosome | CDS | 4478804 | 594 | + | 0.491582 | |
| yjgM | predicted acetyltransferase | RecName: Full=Uncharacterized N-acetyltransferase YjgM; EC=2.3.1.-; | chromosome | CDS | 4483714 | 504 | - | 0.519841 | |
| yjhI | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YjhI; | chromosome | CDS | 4529695 | 789 | - | 0.408112 | |
| yjhU | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized transcriptional regulator YjhU; | chromosome | CDS | 4524018 | 987 | - | 0.503546 | |
| yjiE | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator YjiE; AltName: Full=Hypochlorite-response regulator protein YjiE; AltName: Full=Quorum-sensing regulator protein D; | chromosome | CDS | 4562058 | 912 | - | 0.513158 | |
| yjiR | fused predicted DNA-binding transcriptional regulator and predicted aminotransferase | RecName: Full=Uncharacterized HTH-type transcriptional regulator YjiR; | chromosome | CDS | 4574842 | 1413 | - | 0.550602 | |
| yjjM | predicted DNA-binding transcriptional regulator | RecName: Full=Probable HTH-type transcriptional regulator YjjM; | chromosome | CDS | 4599617 | 915 | - | 0.474317 | |
| yjjQ | predicted DNA-binding transcriptional regulator | RecName: Full=Putative transcription factor YjjQ; | chromosome | CDS | 4608157 | 726 | + | 0.450413 | |
| ykgA | predicted DNA-binding transcriptional regulator | RecName: Full=Putative HTH-type transcriptional regulator YkgA; | chromosome | CDS | 315674 | 687 | - | 0.430859 | |
| ykgD | predicted DNA-binding transcriptional regulator | RecName: Full=RCS-specific HTH-type transcriptional activator RclR; AltName: Full=Reactive chlorine resistance protein R; | chromosome | CDS | 319451 | 855 | + | 0.512281 | |
| ykgK | predicted regulator | RecName: Full=HTH-type transcriptional regulator EcpR; | chromosome | CDS | 309970 | 591 | - | 0.390863 | |
| ymfK | repressor protein phage e14 | RecName: Full=Putative lambdoid prophage e14 repressor protein C2; | chromosome | CDS | 1203836 | 675 | - | 0.444444 | |
| ynaK | conserved hypothetical protein | RecName: Full=Uncharacterized protein YnaK; | chromosome | CDS | 1427091 | 264 | + | 0.481061 | |
| yncC | predicted DNA-binding transcriptional regulator | RecName: Full=HTH-type transcriptional regulator McbR; | chromosome | CDS | 1521976 | 666 | + | 0.436937 | |
| yneJ | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YneJ; | chromosome | CDS | 1616518 | 882 | + | 0.535147 | |
| yneL | predicted transcriptional regulator | RecName: Full=Putative HTH-type transcriptional regulator YneL; | chromosome | CDS | 1592071 | 180 | - | 0.466667 | |
| ynfL | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YnfL; | chromosome | CDS | 1670413 | 894 | - | 0.526846 | |
| yoaA | conserved hypothetical protein with nucleoside triphosphate hydrolase domain | RecName: Full=Probable ATP-dependent helicase YoaA; EC=3.6.4.12; | chromosome | CDS | 1893039 | 1911 | - | 0.552067 | |
| ypdB | predicted response regulator in two-component system withYpdA | RecName: Full=Transcriptional regulatory protein YpdB; | chromosome | CDS | 2505829 | 735 | + | 0.47483 | |
| ypdC | predicted DNA-binding protein | RecName: Full=Uncharacterized HTH-type transcriptional regulator YpdC; | chromosome | CDS | 2506576 | 858 | + | 0.536131 | |
| yphH | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized protein YphH; | chromosome | CDS | 2681519 | 1194 | + | 0.505863 | |
| yqeH | conserved hypothetical protein with bipartite regulator domain | RecName: Full=Uncharacterized protein YqeH; | chromosome | CDS | 2986192 | 633 | + | 0.374408 | |
| yqeI | predicted transcriptional regulator | RecName: Full=Uncharacterized protein YqeI; | chromosome | CDS | 2987158 | 810 | + | 0.396296 | |
| yqfE | conserved hypothetical protein | RecName: Full=Putative uncharacterized protein YqfE; | chromosome | CDS | 3058037 | 231 | - | 0.549784 | |
| yqgE | hypothetical protein | RecName: Full=UPF0301 protein YqgE; | chromosome | CDS | 3091593 | 564 | + | 0.510638 | |
| yqhC | predicted DNA-binding transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YqhC; | chromosome | CDS | 3152918 | 957 | - | 0.504702 | |
| yqjI | predicted transcriptional regulator | RecName: Full=Transcriptional regulator YqjI; | chromosome | CDS | 3215435 | 624 | + | 0.536859 | |
| ytfA | predicted transcriptional regulator | RecName: Full=Putative uncharacterized protein YtfA; | chromosome | CDS | 4432449 | 327 | + | 0.422018 | |
| ytfH | predicted transcriptional regulator | RecName: Full=Uncharacterized HTH-type transcriptional regulator YtfH; | chromosome | CDS | 4438793 | 381 | + | 0.56168 | |
| zntR | DNA-binding transcriptional activator | RecName: Full=HTH-type transcriptional regulator ZntR; AltName: Full=Zn(II)-responsive regulator of zntA; | chromosome | CDS | 4201286 | 426 | + | 0.488263 | |
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