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2024-05-16 09:19:45

Gene list

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COG category: Transcription
Organism: Treponema pallidum subsp. pallidum str. Nichols, Nichols

Number of genes found: 36

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Treponema pallidum subsp. pallidum str. Nichols, Nichols
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
TP0019 transcription elongation factor (greA)RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS21558 489 + 0.453988
TP0082 formate hydrogenlyase transcriptional activator (fhlA)SubName: Full=Formate hydrogenlyase transcriptional activator (FhlA); chromosome CDS90629 1803 - 0.5269
TP0092 RNA polymerase sigma-24 factor (rpoE)SubName: Full=DNA-directed RNA polymerase sigma subunit RpoE; SubName: Full=RNA polymerase sigma-24 factor (RpoE); chromosome CDS101622 489 + 0.541922
TP0093 T. pallidum predicted coding region TP0093RecName: Full=Uncharacterized protein TP_0093; chromosome CDS102094 648 + 0.552469
TP0111 RNA polymerase sigma-54 factor (rpoN)RecName: Full=RNA polymerase sigma-54 factor; chromosome CDS126974 1428 + 0.478992
TP0167 cation-activated repressor protein (troR)SubName: Full=Cation-activated repressor protein (TroR); SubName: Full=Iron (Fe2+)/zinc (Zn2+)/manganese (Mn2+)-dependent transcriptional regulator; chromosome CDS188470 462 + 0.508658
TP0212 DNA-directed RNA polymerase, alpha subunit (rpoA)RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS216003 1056 + 0.493371
TP0218 sigma factor SigB regulation protein, putativeSubName: Full=Putative sigma factor regulatory protein; SubName: Full=Sigma factor SigB regulation protein, putative; chromosome CDS222201 1470 + 0.463946
TP0219 sigma factor SigG regulation protein, putativeSubName: Full=Putative sigma factor regulatory protein; SubName: Full=Sigma factor SigG regulation protein, putative; chromosome CDS223674 2148 + 0.416667
TP0236 transcription antitermination protein (nusG)RecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS242499 558 + 0.528674
TP0241 DNA-directed RNA polymerase, beta subunit (rpoB)RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS245585 3537 + 0.499293
TP0242 DNA-directed RNA polymerase, beta' subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS249134 4251 + 0.505999
TP0254 transcription termination factor Rho (rho)RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS265517 1560 + 0.489744
TP0271 chromosome partitioning protein (parB)RecName: Full=Probable chromosome-partitioning protein ParB; chromosome CDS287537 975 - 0.531282
TP0344 transcription-repair coupling factor (trcF)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS366459 3423 - 0.496348
TP0380 DNA repair helicase, putativeSubName: Full=DNA repair helicase, putative; SubName: Full=Putative DNA repair helicase; chromosome CDS405261 1821 - 0.548051
TP0431 conserved hypothetical proteinRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS459063 822 + 0.574209
TP0458 conserved hypothetical proteinSubName: Full=Putative transcriptional regulator; SubName: Full=Uncharacterized protein; chromosome CDS488333 579 + 0.585492
TP0461 T. pallidum predicted coding region TP0461SubName: Full=Putative transcriptional regulator; SubName: Full=Uncharacterized protein; chromosome CDS490476 360 + 0.577778
TP0493 RNA polymerase sigma-70 factor (rpoD)RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Major vegetative sigma factor; AltName: Full=Sigma-70; chromosome CDS527891 1836 + 0.490196
TP0511 transcription factor (carD)SubName: Full=CarD family transcriptional regulator; SubName: Full=Transcription factor (CarD); chromosome CDS547001 627 + 0.497608
TP0665 T. pallidum predicted coding region TP0665RecName: Full=Uncharacterized protein TP_0665; chromosome CDS727016 756 - 0.575397
TP0687 DNA recombinase (recG)RecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS752821 2061 - 0.425036
TP0701 DNA-directed RNA polymerase, putativeRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS766966 204 - 0.514706
TP0709 RNA polymerase sigma-28 factorRecName: Full=RNA polymerase sigma factor; chromosome CDS775888 789 + 0.508238
TP0739 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS804190 1197 - 0.458647
TP0770 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; SubName: Full=Putative ATP-dependent RNA helicase; chromosome CDS835978 1950 + 0.534872
TP0788 T. pallidum predicted coding region TP0788RecName: Full=Uncharacterized protein TP_0788; chromosome CDS853354 891 + 0.581369
TP0805 exoribonuclease II (rnb)SubName: Full=Exoribonuclease II (Rnb); chromosome CDS873482 2280 - 0.555263
TP0809 ribonuclease III (rnc)RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS877865 765 + 0.568627
TP0854 T. pallidum predicted coding region TP0854SubName: Full=Putative membrane protein; SubName: Full=Uncharacterized protein; chromosome CDS924984 4602 - 0.485224
TP0892 N utilization substance protein A (nusA)SubName: Full=N utilization substance protein A (NusA); SubName: Full=Transcription elongation factor; chromosome CDS970473 1458 - 0.496571
TP0924 tex protein (tex)SubName: Full=Tex protein (Tex); SubName: Full=Transcriptional accessory protein; chromosome CDS1002996 2337 + 0.555413
TP1012 RNA polymerase sigma-43 factor (sigA)RecName: Full=RNA polymerase sigma factor; chromosome CDS1103040 936 - 0.501068
TP1015 N utilization substance protein B (nusB)RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS1106357 426 - 0.532864
TP1029 T. pallidum predicted coding region TP1029RecName: Full=Uncharacterized protein TP_1029; chromosome CDS1123124 687 - 0.614265