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2024-05-06 09:30:52

Gene list

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COG category: Transcription
Organism: Xanthomonas oryzae pv. oryzae KACC10331, KACC10331

Number of genes found: 192

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Xanthomonas oryzae pv. oryzae KACC10331, KACC10331
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA XOO4219 transcriptional regulator MarR familychromosome CDS4498083 540 - 0.648148
NA XOO1247 conserved hypothetical proteinchromosome CDS1276230 774 + 0.662791
NA XOO4380 transcriptional regulator acrR familychromosome CDS4655774 510 + 0.672549
NA XOO2803 transcriptional regulator tetR/acrR familychromosome CDS2985835 660 + 0.659091
NA XOO4348 transcriptional regulator merR familychromosome CDS4625876 207 + 0.642512
NA XOO1657 acetyltransferasechromosome CDS1721304 1080 + 0.644444
NA XOO1191 TonB-like proteinchromosome CDS1218970 1335 + 0.662921
NA XOO3142 transcriptional regulatorchromosome CDS3377655 729 + 0.618656
NA XOO1507 transcriptional regulatorchromosome CDS1539638 1434 - 0.658996
NA XOO2063 transcriptional regulator gntR familychromosome CDS2165213 546 - 0.608059
NA XOO1057 conserved hypothetical proteinchromosome CDS1082213 750 + 0.656
NA XOO0958 conserved hypothetical proteinchromosome CDS992210 525 + 0.634286
NA XOO2932 transcriptional regulatorchromosome CDS3139973 945 - 0.692064
NA XOO1473 conserved hypothetical proteinchromosome CDS1518943 543 - 0.666667
NA XOO2075 transcriptional regulatorchromosome CDS2180356 996 - 0.670683
NA XOO0949 transcriptional regulatorchromosome CDS981531 939 + 0.616613
NA XOO4350 transcriptional regulator lysR familychromosome CDS4627721 888 + 0.68018
NA XOO2069 transcriptional regulatorchromosome CDS2171235 1194 + 0.640703
NA XOO2198 transcriptional regulator lysR familychromosome CDS2310910 948 + 0.637131
NA XOO3631 ECF sigma factorchromosome CDS3891029 678 + 0.688791
NA XOO2586 response regulatorchromosome CDS2737247 633 + 0.64139
NA XOO2809 transcriptional regulator lacI familychromosome CDS2993635 975 - 0.673846
NA XOO2162 conserved hypothetical proteinchromosome CDS2267559 1275 - 0.663529
NA XOO3020 unknown proteinchromosome CDS3240975 579 + 0.673575
NA XOO4461 DNA-binding proteinchromosome CDS4749648 249 + 0.586345
NA XOO1188 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domainchromosome CDS1216387 750 + 0.648
NA XOO3188 maltose transport gene repressorchromosome CDS3425306 93 + 0.602151
NA XOO0405 transcriptional regulator lysR familychromosome CDS411213 924 + 0.678571
NA XOO4194 conserved hypothetical proteinchromosome CDS4471039 543 + 0.644567
NA XOO0190 transcriptional regulator lacI familychromosome CDS194802 1137 - 0.684257
NA XOO3918 transcriptional regulator lacI familychromosome CDS4179597 1104 - 0.644928
NA XOO0386 transcriptional regulatorchromosome CDS389301 201 + 0.587065
NA XOO4051 N-acetyltransferasechromosome CDS4338557 492 - 0.674797
NA XOO4618 sugar diacide regulatorchromosome CDS4920252 891 - 0.667789
NA XOO0550 transcriptional regulator pbsX familychromosome CDS572578 378 - 0.698413
NA XOO3035 serine/threonine kinasechromosome CDS3259927 2904 - 0.698347
NA XOO3920 transcriptional regulator gntR familychromosome CDS4182036 867 - 0.648212
NA XOO2536 transcriptional regulator tetR familychromosome CDS2678394 633 + 0.64613
NA XOO3858 conserved hypothetical proteinchromosome CDS4117828 576 - 0.618056
NA XOO2798 two-component system regulatory proteinchromosome CDS2974122 987 + 0.656535
NA XOO0026 transcriptional regulatorchromosome CDS27068 339 - 0.663717
NA XOO4549 transcriptional regulatorchromosome CDS4848798 702 - 0.685185
NA XOO0935 transcriptional regulator lysR familychromosome CDS964377 891 - 0.65881
NA XOO0268 transcriptional regulator asnC familychromosome CDS281649 633 + 0.630332
NA XOO1688 phage-related proteinchromosome CDS1749350 438 + 0.570776
NA XOO2588 response regulatorchromosome CDS2739515 381 + 0.580052
NA XOO4506 transcriptional regulatorchromosome CDS4805240 621 + 0.547504
NA XOO2345 transcriptional regulator marR familychromosome CDS2485855 501 - 0.568862
NA XOO2343 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homologchromosome CDS2484523 501 + 0.634731
NA XOO3710 two-component system regulatory proteinchromosome CDS3968159 474 + 0.64135
NA XOO2045 conserved hypothetical proteinchromosome CDS2149270 933 - 0.681672
NA XOO1401 acetyltransferasechromosome CDS1434469 720 - 0.601389
NA XOO3527 two-component system regulatory proteinchromosome CDS3796263 645 - 0.648062
NA XOO2344 hypothetical proteinchromosome CDS2485020 744 + 0.674731
NA XOO3033 unknown proteinchromosome CDS3257414 981 + 0.66157
NA XOO4072 transcriptional regulator marR/emrR familychromosome CDS4358254 489 + 0.656442
NA XOO4455 transcriptional regulator marR familychromosome CDS4743944 459 + 0.633987
NA XOO0929 transcriptional regulatorchromosome CDS960864 654 - 0.64526
NA XOO3180 conserved hypothetical proteinchromosome CDS3417183 357 - 0.616247
NA XOO0600 unknown proteinchromosome CDS627664 852 + 0.597418
NA XOO2206 iron dependent repressorchromosome CDS2319457 552 + 0.655797
NA XOO3659 two-component system regulatory proteinchromosome CDS3917313 519 + 0.682081
NA XOO0312 acetyltransferasechromosome CDS322619 582 - 0.627148
NA XOO1804 transcriptional regulatorchromosome CDS1898380 654 + 0.651376
NA XOO3727 transcriptional regulator marR familychromosome CDS3982676 474 + 0.668776
NA XOO2222 conserved hypothetical proteinchromosome CDS2335209 198 + 0.59596
NA XOO4005 conserved hypothetical proteinchromosome CDS4276285 966 - 0.632505
NA XOO3795 transcriptional regulator tetR/acrR familychromosome CDS4047411 699 - 0.678112
NA XOO2674 conserved hypothetical proteinchromosome CDS2836028 630 - 0.64127
NA XOO2124 transcriptional regulatorchromosome CDS2219784 1014 + 0.662722
NA XOO0532 transcriptional regulator lysR familychromosome CDS555161 342 - 0.678363
NA XOO4328 conserved hypothetical proteinchromosome CDS4608449 432 - 0.645833
NA XOO1997 transcriptional regulatorchromosome CDS2104505 852 - 0.698357
NA XOO3155 hypothetical proteinchromosome CDS3390063 819 - 0.665446
NA XOO3870 two-component system regulatory proteinchromosome CDS4132334 846 + 0.644208
NA XOO2486 transcriptional regulator asnC/lrp familychromosome CDS2636319 432 - 0.664352
NA XOO3104 AraC-type DNA-binding domain-containing proteinschromosome CDS3328757 507 - 0.678501
NA XOO4358 transcriptional regulator, LysR familychromosome CDS4635425 426 + 0.607981
NA XOO2165 transcriptional regulator lacI familychromosome CDS2271500 735 + 0.678912
NA XOO2864 conserved hypothetical proteinchromosome CDS3073776 273 - 0.619048
NA XOO1109 transcriptional regulator luxR/uhpA familychromosome CDS1133582 639 + 0.665102
NA XOO1213 conserved hypothetical proteinchromosome CDS1240010 708 + 0.668079
NA XOO2202 unknown proteinchromosome CDS2314324 708 + 0.65113
NA XOO1498 conserved hypothetical proteinchromosome CDS1533445 558 + 0.623656
NA XOO0252 transcriptional regulator lacI familychromosome CDS269244 1053 - 0.683761
NA XOO4619 sugar diacide regulatorchromosome CDS4920323 576 - 0.663194
NA XOO3857 acetyltransferasechromosome CDS4117346 486 - 0.62963
NA XOO0859 putative transcriptional regulatorchromosome CDS880648 729 - 0.647462
NA XOO4448 transcriptional regulator tetR familychromosome CDS4738459 681 + 0.662261
NA XOO2029 Heat-inducible transcription repressor hrcAchromosome CDS2128312 1053 + 0.678063
NA XOO3030 VirG-like two component response regulatorchromosome CDS3253076 780 + 0.652564
NA XOO1406 conserved hypothetical proteinchromosome CDS1440257 459 - 0.642702
NA XOO0683 probable two-component response regulatorchromosome CDS706977 729 - 0.654321
acoK XOO1230 transcriptional regulatorchromosome CDS1251962 3018 - 0.656395
acoK XOO1231 transcriptional regulatorchromosome CDS1253367 513 - 0.654971
ahyR XOO1268 transcriptional regulator AhyR/AsaR familychromosome CDS1299056 834 + 0.61271
algH XOO1425 transcriptional regulatorchromosome CDS1454793 567 + 0.634921
algR XOO4008 two-component system regulatory proteinchromosome CDS4280105 738 - 0.669377
algR XOO0651 transcriptional regulator proteinchromosome CDS673226 1308 + 0.673547
algR XOO0653 transcriptional regulator proteinchromosome CDS674530 186 + 0.564516
algU XOO1849 RNA polymerase sigma-H factorchromosome CDS1950933 753 + 0.621514
ampR XOO1369 transcriptional activator ampR familychromosome CDS1403659 846 - 0.667849
ampR XOO4166 B-lactamase regulatory proteinchromosome CDS4442094 225 - 0.666667
avtA XOO2895 valine-pyruvate aminotransferasechromosome CDS3106412 1203 - 0.652535
baeR XOO1559 two-component system regulatory proteinchromosome CDS1591302 2334 - 0.651242
baf XOO0429 transcriptional regulatorchromosome CDS437057 729 + 0.713306
blaI XOO1190 transcriptional regulator blaI familychromosome CDS1218561 420 + 0.580952
cebR XOO1101 transcriptional regulatorchromosome CDS1125284 1221 - 0.657658
colR XOO1208 two-component system regulatory proteinchromosome CDS1233979 741 - 0.618084
colR XOO3763 two-component system regulatory proteinchromosome CDS4014766 624 - 0.663462
colR XOO3535 two-component system regulatory proteinchromosome CDS3802788 924 - 0.665584
cspA XOO1510 major cold shock proteinchromosome CDS1543325 216 + 0.560185
cspA XOO2721 major cold shock proteinchromosome CDS2882175 366 - 0.551913
cysB XOO3407 transcriptional regulator lysR familychromosome CDS3633921 984 - 0.666667
dbpA XOO2716 ATP-dependent RNA helicasechromosome CDS2876181 1449 + 0.665977
deaD XOO1550 ATP-dependent RNA helicasechromosome CDS1578167 1905 + 0.670341
dnrO XOO2764 repressorchromosome CDS2926373 969 - 0.712074
fis XOO0548 DNA-binding proteinchromosome CDS570643 273 - 0.619048
fldY XOO4566 transcriptional regulatorchromosome CDS4863212 1308 + 0.690367
flgM XOO2566 flagellar proteinchromosome CDS2718824 312 - 0.625
fliA XOO2621 RNA polymerase sigma factor FliAchromosome CDS2780864 756 + 0.649471
gacA XOO3077 transcriptional regulator luxR/uhpA familychromosome CDS3309787 720 - 0.598611
gbpR XOO2916 galactose-binding protein regulatorchromosome CDS3126254 1038 - 0.643545
greA XOO2886 transcriptional elongation factorchromosome CDS3098221 513 - 0.62768
greB XOO3271 transcription elongation factor and transcript cleavagechromosome CDS3507687 567 + 0.663139
hrpG XOO1379 HrpGchromosome CDS1411025 975 - 0.621538
hrpXct XOO1380 HrpX proteinchromosome CDS1412482 1527 + 0.639162
hutC XOO2395 histidine utilization repressorchromosome CDS2553277 738 - 0.666667
icfG XOO4263 IcfG proteinchromosome CDS4537768 2007 + 0.659193
kdgR XOO0338 transcriptional regulatorchromosome CDS350272 927 - 0.651564
kdpE XOO3842 two-component system regulatory proteinchromosome CDS4099676 783 - 0.65645
lexA XOO2942 LexAchromosome CDS3151451 678 - 0.638643
lexA XOO3442 LexA repressorchromosome CDS3678798 606 - 0.665016
lrp XOO0692 leucine responsive regulatory proteinchromosome CDS713242 480 - 0.63125
metR XOO4336 transcriptional regulator metE/metH familychromosome CDS4616519 843 + 0.648873
mfd XOO1472 transcription-repair coupling factorchromosome CDS1515075 3465 - 0.656854
nusA XOO3219 N utilization substance protein Achromosome CDS3458869 1512 - 0.638889
nusB XOO3851 transcription termination factor NusBchromosome CDS4112017 471 - 0.649682
nusG XOO3597 transcription antitermination factorchromosome CDS3860820 612 - 0.584967
oxyR XOO2038 hydrogen peroxide-inducible genes activatorchromosome CDS2138975 606 - 0.669967
oxyR XOO3647 oxidative stress transcriptional regulatorchromosome CDS3908948 942 + 0.633758
paiB XOO2422 transcriptional regulator protein Pai2chromosome CDS2583336 303 + 0.643564
paiB XOO2421 transcriptional regulator protein Pai2chromosome CDS2583000 324 + 0.638889
parB XOO0504 chromosome partitioning proteinchromosome CDS521916 930 - 0.684946
pcaQ XOO3731 transcriptional regulatorchromosome CDS3987441 1041 - 0.634006
pcaR XOO0488 transcriptional regulatorchromosome CDS506040 672 - 0.677083
phoB XOO3666 two-component system regulatory proteinchromosome CDS3922086 690 + 0.66087
phoP XOO0423 two-component system regulatory proteinchromosome CDS429367 684 + 0.593567
prpR XOO0891 propionate catabolism regulatory proteinchromosome CDS915609 1776 - 0.653716
prtI XOO0448 ECF sigma factorchromosome CDS455215 516 + 0.662791
prtR XOO0449 transmembrane regulator protein prtRchromosome CDS455727 753 + 0.677291
recG XOO1151 ATP-dependent DNA helicasechromosome CDS1173693 2154 + 0.661096
regR XOO2227 two-component system regulatory proteinchromosome CDS2341259 567 - 0.659612
relA XOO1736 ATP:GTP 3'-pyrophosphotranferasechromosome CDS1802201 2298 + 0.666667
rfaY XOO1613 RNA polymerase sigma factorchromosome CDS1659017 780 - 0.667949
rfaY XOO1548 RNA polymerase ECF-type sigma factorchromosome CDS1577520 543 - 0.633518
rhlB XOO4301 ATP-dependent RNA helicasechromosome CDS4577310 1944 - 0.672325
rhlE XOO0770 ATP-dependent RNA helicasechromosome CDS783828 1455 - 0.683849
rhlE XOO0133 ATP-dependent RNA helicasechromosome CDS134954 1290 - 0.686822
rho XOO4303 transcription termination factor Rhochromosome CDS4579791 1890 + 0.647619
rnc XOO1855 ribonuclease IIIchromosome CDS1957553 681 + 0.63583
rnk XOO3648 regulator of nucleoside diphosphate kinasechromosome CDS3909989 759 + 0.642951
rpfG XOO2871 response regulatorchromosome CDS3082872 1260 - 0.628571
rpoA XOO3558 RNA polymerase alpha subunitchromosome CDS3829155 999 - 0.61962
rpoB XOO3591 RNA polymerase beta subunitchromosome CDS3853543 4152 - 0.617534
rpoC XOO3590 RNA polymerase beta' subunitchromosome CDS3849175 4218 - 0.627549
rpoD XOO0598 RNA polymerase sigma-70 factorchromosome CDS622943 1890 + 0.609524
rpoE XOO3003 RNA polymerase sigma-E factorchromosome CDS3211965 594 + 0.648148
rpoE XOO1919 RNA polymerase sigma factorchromosome CDS2022254 1092 - 0.643773
rpoH XOO4296 RNA polymerase sigma-32 factorchromosome CDS4572954 990 - 0.606061
rpoN XOO2587 RNA polymerase sigma-54 factorchromosome CDS2738103 1404 + 0.669516
rpoN XOO1284 RNA polymerase sigma-54 factorchromosome CDS1316077 1500 - 0.660667
rpoZ XOO1148 RNA polymerase omega subunitchromosome CDS1170580 333 + 0.636637
salR XOO4418 sal operon transcriptional repressorchromosome CDS4703748 1329 - 0.648608
scoF XOO1870 cold shock proteinchromosome CDS1972238 228 + 0.596491
slyA XOO4601 transcriptional regulator for cryptic hemolysinchromosome CDS4905669 636 + 0.677673
smeR XOO4341 two-component system regulatory proteinchromosome CDS4619834 744 + 0.700269
soxR XOO1257 transcriptional regulator soxR familychromosome CDS1282972 447 + 0.659955
spoT XOO1149 pentaphosphate guanosine-3'-pyrophosphohydrolasechromosome CDS1171041 2172 + 0.635819
tcsR XOO4543 two-component system regulatory proteinchromosome CDS4841501 906 - 0.62362
tctD XOO1105 two-component system regulatory proteinchromosome CDS1130221 894 + 0.635347
tex XOO2225 transcription-related proteinchromosome CDS2337577 2361 + 0.646336
tlpC XOO2204 methyl-accepting chemotaxis proteinchromosome CDS2315875 1893 - 0.600634
trpI XOO3253 transcriptional regulatorchromosome CDS3490790 1017 + 0.668633
uidR XOO3449 transcriptional regulator uid familychromosome CDS3683542 657 + 0.645358
vacB XOO2080 RNase Rchromosome CDS2185145 2529 + 0.650059
vanR XOO3735 transcriptional regulator gntR familychromosome CDS3990118 210 + 0.657143
xylR XOO0169 xylose repressor-like proteinchromosome CDS170717 1185 - 0.66076
ybhD XOO1112 transcriptional regulatorchromosome CDS1136219 903 + 0.625692
ybhD XOO2201 transcriptional regulatorchromosome CDS2314108 207 + 0.676328
yoaA XOO1741 ATP-dependent helicasechromosome CDS1812068 2028 + 0.662229
yybA XOO1998 transcriptional regulator marR familychromosome CDS2105439 480 + 0.635417