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2024-05-06 20:12:10

Gene list

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COG category: Transcription
Organism: Yersinia pestis KIM, KIM

Number of genes found: 253

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Yersinia pestis KIM, KIM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA unknownpMT1 CDS30773 669 - 0.559043
NA unknownpMT1 CDS98938 2010 + 0.61393
NA ParB homologpMT1 CDS91247 972 + 0.447531
NA unknownpMT1 CDS31441 681 - 0.534508
acrR acrAB operon repressorchromosome CDS1186922 657 + 0.432268
agaR putative DEOR-type transcriptional regulator of aga operonchromosome CDS3541399 777 + 0.478764
araC transcriptional regulator for ara operonchromosome CDS2314185 933 + 0.484459
arcA negative response regulator of genes in aerobic pathways, sensors, ArcB and CpxAchromosome CDS4136312 717 + 0.481172
argR repressor of arg regulonchromosome CDS752091 471 - 0.452229
arsR transcriptional repressor of chromosomal ars operonchromosome CDS945713 342 - 0.48538
asnC regulator for asnA, asnC and gidAchromosome CDS554 462 - 0.415584
baeR transcriptional response regulatory protein (sensor BaeS)chromosome CDS1529551 720 - 0.530556
basR transcriptional regulatory protein, member of 2-component regulatory system,chromosome CDS760525 663 - 0.493213
caf1R Caf1RpMT1 CDS71299 906 + 0.334437
celD negative transcriptional regulator of cel operonchromosome CDS1401240 843 + 0.409253
cobB putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferasechromosome CDS1969927 837 + 0.481481
cpxR transcriptional regulator in 2-component systemchromosome CDS77048 723 + 0.497925
cpxR transcriptional regulator in 2-component systemchromosome CDS1645753 684 + 0.475146
creB catabolic regulation response regulatorchromosome CDS3611702 702 - 0.497151
cspE cold shock proteinchromosome CDS3065525 234 - 0.440171
cspE cold shock proteinchromosome CDS1313141 255 + 0.411765
cspG homolog of Salmonella cold shock proteinchromosome CDS1379286 243 + 0.386831
cspI cold shock-like proteinchromosome CDS237428 309 + 0.436893
cspI cold shock-like proteinchromosome CDS237921 288 + 0.440972
cysB positive transcriptional regulator for cysteine regulonchromosome CDS2270296 975 + 0.465641
cytR putative transcription repressorchromosome CDS3823480 1020 - 0.453922
cytR regulator for deo operon, udp, cdd, tsx, nupC, and nupGchromosome CDS315809 1029 - 0.48105
dbpA ATP-dependent RNA helicasechromosome CDS2792757 1383 - 0.501085
deaD inducible ATP-independent RNA helicasechromosome CDS781467 2010 + 0.535323
deoR transcriptional repressor for deo operon, tsx, nupGchromosome CDS3158635 765 + 0.448366
dinG probably ATP-dependent helicasechromosome CDS3288628 2181 - 0.492435
emrR regulator of plasmid mcrB operon (microcin B17 synthesis)chromosome CDS1040620 537 - 0.456238
exuR negative regulator of exu regulon, exuT, uxaAC, and uxuBchromosome CDS3999960 879 + 0.444824
fadR negative regulator for fad regulon, and positive activator of fabAchromosome CDS2407095 720 - 0.4625
fimZ fimbrial Z protein; probable signal transducerchromosome CDS2634154 633 + 0.401264
fis site-specific DNA inversion stimulation factorchromosome CDS229846 297 + 0.464646
flgM anti-FliA factorchromosome CDS2773415 303 + 0.475248
fliA alternative sigma factor 28chromosome CDS2727988 723 - 0.529737
fruR transcriptional repressor of fru operon and otherschromosome CDS4032126 1011 - 0.531157
galR repressor of galETK operonchromosome CDS3504295 1092 + 0.515568
galR repressor of galETK operonchromosome CDS2330945 1017 - 0.493609
gcvA positive regulator of gcv operonchromosome CDS3465912 918 - 0.491285
glpR repressor of the glp operonchromosome CDS4351766 759 - 0.491436
gntR regulator of gluconate (gnt) operonchromosome CDS4315358 996 + 0.521084
greA transcription elongation factorchromosome CDS762899 477 + 0.42348
greB transcription elongation factorchromosome CDS4371125 516 + 0.492248
hepA probable ATP-dependent RNA helicasechromosome CDS4058750 2907 + 0.519436
hpaR putative regulatorchromosome CDS2810221 477 + 0.448637
iciA replication initiation inhibitorchromosome CDS3635668 957 + 0.53187
iclR repressor of aceBA operonchromosome CDS24361 594 - 0.537037
ilvY positive regulator for ilvCchromosome CDS380665 885 - 0.527684
kdpE regulator of kdp operon (transcriptional effector)chromosome CDS1407563 630 - 0.504762
lacI transcriptional repressor of the lac operonchromosome CDS3562787 1149 - 0.482158
lcrF/virF thermoregulatory transcription factor LcrFpCD1 CDS11299 816 - 0.416667
leuO probable transcriptional activator for leuABCD operonchromosome CDS4039341 969 - 0.427245
lexA regulator for SOS(lexA) regulonchromosome CDS647648 609 + 0.505747
lrhA NADH dehydrogenase transcriptional regulator, LysR familychromosome CDS1800209 933 + 0.468382
lrp regulator proteinchromosome CDS3103442 495 - 0.442424
lysR positive regulator for lyschromosome CDS3506815 987 + 0.509625
malT positive regulator of mal regulonchromosome CDS4354117 2712 - 0.510693
metJ repressor of all met genes but metFchromosome CDS321175 318 - 0.493711
metR regulator for metE and metHchromosome CDS490311 954 - 0.530398
mfd transcription-repair coupling factorchromosome CDS1962082 3447 - 0.51233
mlc putative NAGC-like transcriptional regulatorchromosome CDS2326833 1218 + 0.46798
mtlR repressor for mtlchromosome CDS4532173 555 - 0.482883
nagC transcriptional repressor of nag (N-acetylglucosamine) operonchromosome CDS1346082 1266 - 0.49684
narP nitrate/nitrite response regulatorchromosome CDS1598894 663 - 0.447964
nhaR transcriptional activator of nhaAchromosome CDS4115647 900 - 0.457778
nusA transcription pausing L factorchromosome CDS770412 1506 + 0.491368
nusB transcription termination; L factorchromosome CDS1131147 417 + 0.477218
nusG component in transcription antiterminationchromosome CDS536562 546 + 0.487179
ompR response regulator (sensor, EnvZ)chromosome CDS4371776 720 + 0.522222
ompR transcriptional regulatory proteinchromosome CDS4313033 738 - 0.50813
oxyR activator, hydrogen peroxide-inducible geneschromosome CDS347497 918 + 0.488017
pdhR transcriptional regulator for pyruvate dehydrogenase complexchromosome CDS854560 837 + 0.505376
phnF putative transcriptional regulatorchromosome CDS814018 726 - 0.567493
phoB positive response regulator for pho regulonchromosome CDS1107191 720 + 0.484722
phoP transcriptional regulatory proteinchromosome CDS1975226 672 - 0.479167
psaE putative regulatorchromosome CDS3185985 645 - 0.376744
pspA phage shock protein Achromosome CDS2182084 666 + 0.48048
pspC phage shock proteinchromosome CDS2183138 360 + 0.505556
pspF psp operon transcriptional activatorchromosome CDS2180811 1044 - 0.511494
purR transcriptional repressor for pur regulon, glyA, glnB, prsA, speAchromosome CDS2152199 1026 - 0.500975
rcsB positive response regulator for colanic capsule biosynthesischromosome CDS3270556 654 + 0.396024
recG DNA helicasechromosome CDS111774 2082 + 0.51633
relA (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome CDS907608 2235 + 0.509172
rfaH transcriptional activatorchromosome CDS510380 489 - 0.441718
rhaR positive regulator for rhaRS operonchromosome CDS668152 873 + 0.490263
rhaS positive regulator for rhaBAD operonchromosome CDS667198 822 + 0.475669
rhlB putative ATP-dependent RNA helicasechromosome CDS400456 1287 - 0.486402
rho transcription termination factor Rho; polarity suppressorchromosome CDS402667 1260 + 0.45873
rnb RNase II, mRNA degradationchromosome CDS2286866 1935 - 0.502842
rnc RNase III, ds RNAchromosome CDS1441501 681 + 0.497797
rnk regulator of nucleoside diphosphate kinasechromosome CDS174176 411 + 0.501217
rob right origin-binding proteinchromosome CDS4137895 867 + 0.469435
rpoA RNA polymerase, alpha subunitchromosome CDS4455019 990 + 0.508081
rpoB RNA polymerase, beta subunitchromosome CDS540074 4029 + 0.493671
rpoC RNA polymerase, beta prime subunitchromosome CDS544195 4257 + 0.511863
rpoD RNA polymerase, sigma(70) factorchromosome CDS3921388 1899 + 0.487098
rpoE RNA polymerase, sigma-E factorchromosome CDS1434302 576 + 0.451389
rpoH RNA polymerase, sigma(32) factorchromosome CDS467801 858 + 0.503497
rpoN RNA polymerase, sigma(54 or 60) factorchromosome CDS162227 1434 + 0.488842
rpoS RNA polymerase, sigma S (sigma38) factorchromosome CDS933329 999 + 0.474474
rpoZ RNA polymerase, omega subunitchromosome CDS108672 276 + 0.514493
rstA response transcriptional regulatory protein (RstB sensor)chromosome CDS2363830 801 + 0.475655
slyA transcriptional regulator for cryptic hemolysinchromosome CDS2161852 432 + 0.402778
sopB SopB homologpCD1 CDS41417 834 + 0.406475
spoT (p)ppGpp synthetase IIchromosome CDS108967 2109 + 0.489331
srmB ATP-dependent RNA helicasechromosome CDS1429871 1326 - 0.505279
treR repressor of treA,B,Cchromosome CDS169282 954 + 0.510482
trpR regulator for trp operon and aroH; trp aporepressorchromosome CDS4140038 402 - 0.5
ttk putative transcriptional regulatorchromosome CDS101600 597 + 0.479062
tyrR transcriptional regulator of aroF, aroG, tyrA and aromatic amino acid transportchromosome CDS2187482 1668 + 0.483213
uhpA response regulatorchromosome CDS2850881 630 + 0.487302
uhpA response regulatorchromosome CDS4469576 663 - 0.508296
ureG urease accessory proteinchromosome CDS1390754 663 + 0.484163
uvrY putative 2-component transcriptional regulatorchromosome CDS2704374 657 - 0.455099
uxuR regulator for uxu operonchromosome CDS3208713 801 - 0.493134
vacB ribonuclease Rchromosome CDS720307 2535 + 0.523077
wecD hypothetical proteinchromosome CDS411486 795 + 0.51195
xylR putative regulator of xyl operonchromosome CDS4494979 1194 - 0.484087
y0009 hypotheticalchromosome CDS9062 204 + 0.514706
y0011 hypothetical proteinchromosome CDS10766 690 - 0.44058
y0053 putative transcriptional regulatorchromosome CDS65442 1296 - 0.492284
y0109 putative acetyltransferasechromosome CDS119050 924 - 0.50974
y0113 putative transcriptional regulator LYSR-typechromosome CDS123122 894 - 0.527964
y0141 hypothetical proteinchromosome CDS153441 264 - 0.44697
y0173 hypothetical proteinchromosome CDS178486 282 - 0.453901
y0180 putative transcriptional regulator LYSR-typechromosome CDS184581 912 + 0.47807
y0181 putative transcriptional regulatorchromosome CDS185744 876 + 0.343607
y0216 putative transcriptional regulatorchromosome CDS231438 726 - 0.506887
y0250 putative AraC-like regulatorchromosome CDS265407 942 - 0.461783
y0260 transcriptional repressorchromosome CDS277204 489 + 0.433538
y0322 hypothetical proteinchromosome CDS350003 648 + 0.513889
y0332 hypothetical proteinchromosome CDS366872 882 - 0.475057
y0390 transcriptional regulatorchromosome CDS435754 687 - 0.491994
y0421 hypothetical proteinchromosome CDS469576 438 - 0.484018
y0474 putative acetyltransferasechromosome CDS531243 585 - 0.437607
y0492 putative transcriptional regulatorchromosome CDS555489 510 - 0.44902
y0512 response regulator/transcription activatorchromosome CDS581872 633 - 0.450237
y0517 putative type III secretion system componentchromosome CDS588706 621 + 0.417069
y0536 hypotheticalchromosome CDS602229 987 - 0.383992
y0549 hypotheticalchromosome CDS616262 489 - 0.476483
y0598 hypothetical proteinchromosome CDS675124 591 - 0.497462
y0636 hypothetical proteinchromosome CDS719590 477 + 0.444444
y0669 putative regulator for maltose metabolismchromosome CDS754397 276 - 0.496377
y0699 hypotheticalchromosome CDS784104 312 + 0.455128
y0742 hypotheticalchromosome CDS826689 504 - 0.513889
y0843 putative transcriptional regulatorchromosome CDS942813 999 - 0.502503
y0862 transcriptional regulatorchromosome CDS965773 810 - 0.427161
y0878 putative transcriptional regulatorchromosome CDS986875 945 - 0.478307
y0902 hypothetical proteinchromosome CDS1010428 774 - 0.44832
y0931 hypotheticalchromosome CDS1046393 846 + 0.521277
y0961 probable LysR-type transcriptional regulatory proteinchromosome CDS1085282 912 + 0.325658
y0975 possible NAGC-like transcriptional regulatorchromosome CDS1100648 915 + 0.502732
y0999 hypothetical proteinchromosome CDS1128812 450 + 0.48
y1038 putative LRP-like transcriptional regulatorchromosome CDS1170276 462 + 0.469697
y1094 putative transcriptional regulatorchromosome CDS1234482 420 + 0.464286
y1111 hypotheticalchromosome CDS1250301 498 - 0.435743
y1123 putative transcriptional regulator LYSR-typechromosome CDS1260736 894 + 0.495526
y1140 putative regulatorchromosome CDS1280540 303 + 0.481848
y1145 conserved hypothetical proteinchromosome CDS1291754 855 - 0.559064
y1164 putative regulatory proteinchromosome CDS1311511 618 + 0.357605
y1165 putative cold-shock proteinchromosome CDS1312428 492 - 0.361789
y1304 hypothetical proteinchromosome CDS1446332 840 - 0.492857
y1328 hypotheticalchromosome CDS1474331 1392 - 0.467672
y1333 hypothetical proteinchromosome CDS1479438 558 + 0.503584
y1389 putative transcriptional regulatorchromosome CDS1542521 1506 - 0.545153
y1461 putative NAGC-like transcriptional regulatorchromosome CDS1619845 873 + 0.565865
y1464 putative transcriptional regulatorchromosome CDS1621458 879 + 0.49033
y1472 putative response regulatorchromosome CDS1631521 708 - 0.514124
y1503 transcriptional regulatorchromosome CDS1667069 879 - 0.514221
y1528 hypotheticalchromosome CDS1691686 603 + 0.351575
y1596 putative transcriptional regulatorchromosome CDS1764852 786 + 0.489822
y1619 putative transcriptional regulatorchromosome CDS1787503 1137 + 0.485488
y1650 putative LACI-type transcriptional regulatorchromosome CDS1823261 993 + 0.470292
y1679 hypotheticalchromosome CDS1853231 498 - 0.522088
y1690 putative transcriptional regulatorchromosome CDS1864011 1005 - 0.404975
y1691 putative transcriptional regulator LYSR-typechromosome CDS1865262 942 - 0.522293
y1711 putative lacI-family transcriptional regulatorchromosome CDS1891009 1041 - 0.464938
y1731 hypotheticalchromosome CDS1914859 981 + 0.50051
y1741 hypotheticalchromosome CDS1922705 642 - 0.376947
y1788 putative NAGC-like transcriptional regulatorchromosome CDS1968945 789 + 0.504436
y1789 hypotheticalchromosome CDS1969711 168 + 0.517857
y1803 putative sucrose specific transcriptional regulatorchromosome CDS1982931 1044 - 0.491379
y1807 hypothetical proteinchromosome CDS1987958 573 + 0.464223
y1813 putative regulatorchromosome CDS1992186 450 - 0.44
y1876 putative regulatorchromosome CDS2072897 792 + 0.441919
y1949 putative transcriptional regulator LYSR-typechromosome CDS2151178 933 + 0.501608
y1959 hypothetical proteinchromosome CDS2158886 600 - 0.503333
y1995 hypotheticalchromosome CDS2196053 840 - 0.372619
y2009 putative transcriptional regulatorchromosome CDS2212310 957 + 0.53187
y2012 hypotheticalchromosome CDS2218967 324 + 0.459877
y2084 hypotheticalchromosome CDS2295546 894 + 0.432886
y2109 putative transcriptional regulator LYSR-typechromosome CDS2325696 924 + 0.453463
y2152 hypotheticalchromosome CDS2379948 861 - 0.291521
y2171 putative regulatorchromosome CDS2400117 933 - 0.530547
y2191 putative phage antirepressorchromosome CDS2424950 1095 - 0.452055
y2215 putative phage endopeptidase Rzchromosome CDS2447222 459 - 0.507625
y2218 putative phage proteinchromosome CDS2449556 564 - 0.429078
y2239 putative enzymechromosome CDS2467147 1905 - 0.506562
y2245 hypothetical proteinchromosome CDS2473696 1026 + 0.461014
y2276 putative transcriptional regulatorchromosome CDS2512443 1155 - 0.550649
y2307 putative 2-component transcriptional regulatorchromosome CDS2542389 693 + 0.520923
y2339 putative repressorchromosome CDS2575123 768 + 0.509115
y2350 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport systemchromosome CDS2589041 1449 - 0.509317
y2373 putative DEOR-type transcriptional regulatorchromosome CDS2619352 771 + 0.500648
y2375 putative aminotransferasechromosome CDS2622569 1188 - 0.472222
y2377 putative LysR-type transcriptional regulatorchromosome CDS2624985 963 - 0.505711
y2382 putative transcriptional regulator LYSR-typechromosome CDS2629576 897 - 0.508361
y2419 putative transcriptional regulator of the GntR familychromosome CDS2688028 798 - 0.546366
y2457 hypotheticalchromosome CDS2722939 396 + 0.44697
y2469 putative AraC-type regulatory proteinchromosome CDS2732943 879 + 0.433447
y2498 putative transcriptional regulatorchromosome CDS2760552 1002 + 0.500998
y2570 putative regulatorchromosome CDS2831818 387 + 0.416021
y2579 putative transcriptional regulatorchromosome CDS2839990 888 - 0.495495
y2666 putative transcriptional regulator LYSR-typechromosome CDS2940431 870 + 0.53908
y2733 hypothetical proteinchromosome CDS3017713 723 - 0.430152
y2877 putative transcriptional regulator LYSR-typechromosome CDS3177250 873 - 0.507446
y2919 putative ATP-dependent helicasechromosome CDS3224718 1758 + 0.525597
y2933 putative regulatorchromosome CDS3236486 741 - 0.376518
y2950 putative DEOR-type transcriptional regulatorchromosome CDS3250293 816 - 0.482843
y2954 putative phage repressor protein cIchromosome CDS3254082 723 + 0.477178
y3089 hypotheticalchromosome CDS3399434 321 - 0.461059
y3115 hypothetical proteinchromosome CDS3426430 261 + 0.494253
y3187 putative transcriptional regulatorchromosome CDS3509327 909 - 0.49945
y3192 hypotheticalchromosome CDS3514207 705 - 0.334752
y3231 hypotheticalchromosome CDS3557149 1083 - 0.481071
y3249 hypotheticalchromosome CDS3582062 681 + 0.511013
y3260 hypotheticalchromosome CDS3594045 201 + 0.41791
y3266 hypothetical proteinchromosome CDS3597721 399 - 0.45614
y3267 hypotheticalchromosome CDS3598579 372 - 0.438172
y3322 hypothetical proteinchromosome CDS3656247 666 + 0.462462
y3442 hypotheticalchromosome CDS3829126 1047 + 0.452722
y3498 putative AraC-type regulatory proteinchromosome CDS3880470 894 - 0.485459
y3510 putative transcriptional regulator LYSR-typechromosome CDS3892686 912 - 0.530702
y3547 putative transcriptional regulatorschromosome CDS3928806 933 - 0.554127
y3567 putative repressorchromosome CDS3948021 987 - 0.47923
y3587 hypotheticalchromosome CDS3978526 1500 + 0.49
y3708 hypotheticalchromosome CDS4122538 2448 + 0.35335
y3765 putative transcriptional regulator, sorC familychromosome CDS4188088 681 - 0.531571
y3766 hypotheticalchromosome CDS4188851 150 - 0.486667
y3781 putative AraC-type regulatory proteinchromosome CDS4201370 876 - 0.400685
y3851 conserved hypothetical proteinchromosome CDS4288430 1128 - 0.472518
y3913 hypothetical proteinchromosome CDS4368216 2376 - 0.541667
y3949 putative transcriptional regulatorchromosome CDS4406136 987 - 0.513678
y4017 putative transcriptional regulatorchromosome CDS4456876 435 + 0.452874
y4049 hypotheticalchromosome CDS4490014 363 + 0.438017
y4092 hypothetical proteinchromosome CDS4541897 456 + 0.519737
y4095 hypotheticalchromosome CDS4543500 645 - 0.534884
ybtA AraC-type transcriptional regulator for yersiniabactin uptake and biosynthetic geneschromosome CDS2653492 960 + 0.563542
ypeR putative transcriptional activator proteinchromosome CDS1916326 738 + 0.333333
ytbR putative transcriptional activatorchromosome CDS3720096 744 - 0.385753