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# Xylella fastidiosa Temecula1, Temecula1

>PD1748 conserved hypothetical protein
MYCLFCQHTDTRVIDSRVSEDGATIRRRRECEACGERFSTLETIELKLPV
IIKKDGGREAFDGRKLRTSFDRALQKRPVAEERIEMAMRAVIHRLRMAGE
REVPSIVVGECVMAELRKLDHVGYVRFASVYRSFQDVADFREEIEKLESE
LLVSREQLPLLEAVMESIGHPSIDQGG
>PD2104 conserved hypothetical protein
MTITKKINVSELPEFDAAEYLNSEEEVAAYLTAVLEENDPALLAAALGDI
ARSRGMSQIAKDSGITREALYKALRPGSEPRFDTISRVCTALGIRLVAQP
MH
>PD1177 conserved hypothetical protein
MNNETFSRYDTADYLKTEEDIAAYMEAVMEEGGRDNPAFIARALGAVARA
RNLSQLARDVGMSRQGLDKALSNDGNPSFSTILKVAKALGLRMSFTPSSM
S
>PD1149 transcriptional regulator
MFIVWPLGHNFYMDLYQRIGVMHCLLKSVSCPIGVLRFQDELGCSAETIY
HDVAFMRNVLMAPIEGDGETGFFYLLSEGNQFELPGVWFNSEELYALLAM
QQQLVSASMDGLVSSMLLPLQQHIENLLAAQPGMPPWQVGRVRVISHRNR
KLNQVSFRIVASAVLERKQLGFYYRARSTDEASNRVVSPQCMTHYRGNWY
LDAWDHGRQGVRSFAVDRIYRARIIDVQAHDLPDSDLEEQSSGSYGIFSG
LPKGWATIVFSSKAARWVADEYWHVKQRGRFLVDGRYELQVPYSISRELL
MDVLHYGSDAEIVEPPALREQAKALLSLALSNYE
>PD1213 KDO kinase
MLHRIVTLERMVAFDANEILTPFCEGHREGAILFDCQRMRQVEYGLFVPA
WWGERAHPISEGGRGSAWFVEASFGNAVLRQYRRGGMIAMLNRDRYFWCG
GHRTRSVLEFRLMRELISRGLPVPTPLAACYVRHGVQYRAAILMERLEGV
SSLAMCVRGNSKEIHWEQIGRMISRFHREGLDHADLNAHNILLDQAGQCW
LIDFDRGALRIPATKWREHNLARLLRSLLKIRGERSVDAVYRDFERLCRA
YDLAWGRGC
>PD1528 conserved hypothetical protein
MAMTLDDIKACLQAGGFQVANEVALSNGKGTQLRLQNEAIVNSYHTGNFI
VQGKNQDAVKKCLGVQPTHVAAAPTPQNGAATKPMLSKVFVVYGHDAAAR
TELEAMLRRWKLEPLILDQLPSQGQTIIEKLEKYTAEVKFAVVLATPDDE
GFPACQENEKKFRARQNVVLELDMMLTLLGRKNVAILMKQQDNMERPSDI
QGLLVHPVQGQPAKRCRNSSGKGNGSSGLPDFCG
>PD1005 phage-related repressor protein
MSNSNMDKYEMRRLALKALSDKLGYGGKAMIAAKIGKDSSYVSRMLYPPK
KAGRKRIGEDMFELLVRAYPDAFKEIATMSRALDNREDTNYVRVQHIEAE
AHMGPGRINEDLPEVINSVEFPPNYIRSLIGFLPPPGRLKLITGTGNSMS
PKILPGETVLVDTGCNTFVGDGLYLVNTGSGQQIKALHERNGYIYITSMD
KDLYPDFVADENTIIGGRVYLIQHLERVS
>PD0307 toxin
MNTRHTIPKHENTQTQTAPLIDAKIHVASFRQVRQARRDELIKDYVELIS
DLIADSGQARQVDIAAHLGVAQPTVAKMLKRLARDGWVIQRPYRGTFLTP
AGKALAAASRECHQTVERFLLALGIDATTARRDAEGIEHHVSETTLAAFR
TFLQRHSDTT
>PD0032 conserved hypothetical protein
MMSVRNRMPPWHENFKLPNGHVLLLRPVRSEDVEPLQGVFALMGPQEIRE
RFAPSATGSSERFQQLTNPNAKREIVLVAAEQLPPGEAMIAALARASIVP
NSRHAEYIILVSSFVSGQGLGRQLLRKLVKWARGKYLDHLYGDILERNRP
MLELAESLGFQRESHPESPDLVRMTLKLYG
>PD1087 conserved hypothetical protein
MYHYTESGLGNVWLHNGFTVHKTPYGDGIAIDNLPSLHRSLSLALALKPA
TLSGAEIRFMRKELELSQPEFAACLGTTTQTLAAWEEGRAALPDAADKMI
RVLINAHYKR
>PD0835 conserved hypothetical protein
MPATLKEFQETLCAGIVARFNQVRRLYEQLAGAPPEQWTQARCNDAVTVL
CAPTGAGKTLIAVETMRRVSATGERVLWFWFAPFSGLVEQSRQVIAAQAP
ELDVFDLQSDRCWETVRSGGVFVVTWAAVAVRNTEGRRARTHGDSGMSLD
VLLALAREEGVRIGCVVDEAHHTALSGHQARLFFQSVLAPDYALLMTATP
RDADVMAFERATGYMVGQAAEWAMVSRFDAVQAGLLKYGVRMVRFIAQDG
DAAQLIDFEHLALRQCAETHRMIKRLLADAGVALTPLMLVQVPDGRAAQD
EARRFLTEQLHFDHEAVRIHTADEPDPALLSLANDPTVEVLIFKMAVALG
FDAPRAFTLAALRGARDPAFGIQVIGRIVRKHALLQGRVTLPESLDYGYV
FLSNAQSQEGLLDAGQQINTLTTQSPELGTQTVVTVIGEHSHVQVVRSGE
PLSLLVSPQGVALDAVERTSQMAPDALGDPLIEEGWEPWTRAAQGILEWV
GAQPGHPRKDAAASTTSTVNALLCMGQGVLKHYRRREDAPAMLRSERLPD
PPADFEAQLMDFIDFNDTVLASRFRVRERVMRVESALFSGVQHSEEECQT
DLWATLAPVAVAEKAEQIRLRLSEANDRELQLRLLEKFRQAIEQSGSEPP
EDEELLLQQLELVLIRHPGLLRVAYRRFRHAQVADVAVPLPAELHSDMPL
QRAQRGLYGVFPQGLNQDETAVAQQLDASPLVHWWHRNPVRRPESVALYR
WDDGEGFYPDFVVAMTQRNTHGQIALLEVKGAHLWGEPREVEKAAAVHPE
YGRVFIVGRQRGERVFHHLRVLEHRLETDGVFTLDRLRHV
>PD0813 transcriptional regulator PbsX family
MYVSKLSERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVEN
LIALARRTGMAFEYLSTGRGKPDCGKPISSISEPTPTYQKFDSQQKLLLE
QFAKLTPRQRSGLLELLGTPFDTLRR
>PD1771 conserved hypothetical protein
MSGTKASVFSTILQLMNSLAIRAVADNVRRLLEARRLSQKELAALSGVSQ
KSINDLLNYGGTVSKEPRLGTIEKLAKGFGIATWQLQIPGLPVDLLQGQM
VSKVIENFRDAGTVGRENISRVAESEVRYSLVQNSERGAPR
>PD0707 transcriptional regulator MarR/EmrR family
MSESNTASHTIHINLEQFLPFRMSMLSKHINDNIAKIYEHRYNIAATEWQ
VITILALYPGSSASKVSEHSAMDKVAVSRAVARLLKHHFIQRETHGDDRR
RSMLTLSPIGHQVYETVAPLINDMKNRLMSVLSEKERQLLEHLIDRLIKE
GLPRMILQD
>PD0989 phage-related protein
MPHTLLRLPAVKMETGYSRSTIYLRILQGLFTTPVHLGARSVGWPCTEVS
ALNAARIAGKSNTEIRALVDTLHKARKNAA
>PD1726 phage-related protein
MNAPSEFHLQFESHAVRVQLDEHKRRWFNANDICAALELLNPRAALAQHV
DAENVSKRAAIDTIGRTKHVNYLNESGVYALLIGSTKEAAKRFRQWLISE
ALPAAAARKAGQHIVPLHHAPSIPSPFQPTEDHAMNAITPFQFESHAVRT
VVDDHGEVWFVGKDVADVLGYTNHNKALGDHCRGVPKRYPLQTSGGVQEI
RIISEPDMLRLIVSSKLPAAERFERWVFEEVLPTLRKTGNRPALDHSTHS
ANAITPFQFESKDVRIQLDEANAPWFNANDVCAVLEFGNPHQAIESHVDV
DDLQKLEVTDALGRTQRVNHINESGLYSLIMGSTKPAAKRFKRWVTSEVL
PTLRKTGTYSTPGALPTLPGPTQDRVAALLLIGQFVSKVTGVKPGIAAAA
TLACIKSNTNLTTEEIRRALPALQEPLCLLNATQLGKQLHCSAKAVNQLL
ASSGLQFRNERDDWELTEAGRVWGEAIPYSRNGHSSYQILWNPTVVDSLK
VAA
>PD1993 temperature acclimation protein B
MSDTSDDRQIGTVKWFNDNKGFGFITSNNGPDLFVHYRAIQGNGFKSLQE
GQKVSFVAVQGQKGMQADQVQVL
>PD1001 phage-related protein
MNNNSNEPGAGMNAMTPFQFESHAVRTVVDDHGEVWFVGTDVATVLGYAN
PHKALDAHCKGCAKRTPLQTPGGIQEIRIISEPDMLRLIVSSKLPAAERF
ERWVFEEVLPTLRKTGTYSTPGALPTLPGPTQDRVAALLLIGQFVSKVTG
VKPGIAAAATLACIKSNTNLTTEEIRRALPALQEPLCLLNATQLGKRLHC
SAKAVNQLLASRGFQFRNERDEWELTEAGRVWCEAIPYSRNGHSSYQLLW
NPDVIACLREAA
>PD1321 phage-related protein
MIAPVFIHHIVAADTVDELVMVRRESKREVQDLLLEAVKRRETYKQLTSQ
GAMTR
>PD1116 phage-related protein
MTRSIIPFDFHSHVVRVVMRDGNPWFVATDVAVALGYRDAANAARHVGAH
QKGTHIVSTIKGNQSLTIVSEGGLYRLVLRSRRAEAVAFSDWVTDEVLPS
IRKTGSYSASHPPVVTLTEEEAFNLYALLRMVAGHLSRERIEPIEQALHL
IRSPLAGAVSDLWREVGPRAKRMENLAGRCRSAFYRLR
>PD0225 conserved hypothetical protein
MSRPFSVSETLKADCFGRILLVNGKGEKFIRRDLGAVSWWLRGLAGWLAR
REVAALRQLNTLPAVPRLLNWDGVCLDRSFLSGQMMYQCPPRGDLAYFRA
ACRLLQQMHRCGVVHNDLAKEANWLVLEDGSPGVIDFQLAVRGDPRAPWM
RLLAREDLRHLLKHKRMYCPEALTPVERRLLKRPSWIRRLWFATGKPVYR
FVTRRVLHWEDNEGRGAKP
>PD0954 conserved hypothetical protein
MYHYTESGLGNVWLRNGFTVHKTPYGDGIAIDNLPSLHRSLSLALALKPA
TLSGSEIRFMRKELELSQPEFAARLGTNVQTVAAWEEGRAALPDAADKMI
RVLINAHYKR
>PD0682 transcriptional regulator LacI family
MRRPTIKDIAERADVSLKTVSRVINNESSVMPATRARVLRAIADLNYEPD
LSPSARNLRSAMPCVIGLVYDNPNPYHIINIQNGVLAACRETGFSLQIYP
CDSTSPLLVEELTEWVQRSRQAGLVLTAPMSERPELIAGLIARGIKFVRI
IAATEDPCDGPCVYIADRKAAYEITEHLIQLGHQRIGFLWGGAQHRSSGE
RYAGYEAALKDYGIDLDKRLVVPGDYTFDDGFRGARRLLALRDQPTEIFG
SNDEIAAGVLAAARSVGINVPHHLSITGFENSPFASHSSPTLTTASQTTD
EIARHAARLLIGQLRMDTCDEQSMLLQNRGFVPQLVVRASTAPVRQTPFI
KTPSHDLS
>PD1159 transcriptional regulator
MDLEDWSSRLKVLADATRVRLLTLLEQEELTVAELSAITRLAQPRVSTHL
AKLKEAGLVRDRRAGVSAYYRFDESTLDPAQRALWCALSTGSDDPLLRQD
AEGVAGVLAMRAADQNWADSVAGDMERHYSPGRTWEALARTALPLLETGD
VLDIASGDGVLAKLMAPHSHRYVCIDTSARVVATTSERLRTLDNVEVLEG
DMHALPFPDASFDLVVLMHALTYTTQPAQAVAEGARVLRRGGRLLLCSLA
RHEHHSVVNAYGHVNLGFNAKELRKFIKKAALTVSSLETVTREKRPPHFE
VISLIAYRP
>PD1909 transcription regulator protein
MPMLDPGSNRELPTIPAKRYFSIGEVADLCDVKQHVLRYWETEFPSLEPA
KRRGNRRYYQRHDVLLVRQIRSLLYEQGYTIGGARLRLEGESARNELTLS
HQIIKQVRLELEEVLQLLRS
>PD1194 phage-related protein
MNLRPYQHTIVDFILTHPRCNLFVPMGLGKTVATLTALDVLLVVEDIAPI
LVIAPLRVAATTWPDEVAKFPHLRHLRVSVVVGSAAARRHALEQEADIYC
INYDTLKWLVEFYKDRWPFRMVVADECSKLKGFRLRQGTRRARALATHVH
TKVERYVGLTGTPAPNGLQDLWALMWMVDRGARLGTHFKAFIDRWFRAMQ
IGSDPHAVRFAPTPHASQEIQDKIRDLCLSLDPQAYFDLRQPIVNTIRVA
LPAHAQRLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDD
TRQAWEVVHDAKLEALHDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRA
LDKHPDTIRDWNAGNIPVLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQ
YQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDELVMARRESKREVQDL
LLEAVKRRETGKPLTSQGAMTR
>PD0382 phage-related protein
MNLRPYQHTIVDFILTHPRCNLFVPMGLGKTVATLTALDVLLVVEDIAPI
LVIAPLRVAATTWPDEVAKFPHLRHLRVSVVVGSAAARRHALEQEADIYC
INYDTLKWLVEFYKDRWPFRMVVADECSKLKGFRLRQGTRRARALATHVH
TKVERYVGLTGTPAPNGLQDLWALMWMVDRGARLGTHFKAFIDRWFRAMQ
IGSDPHAVRFAPTPHASQEIQDKIRDLCLSLDPQAYFDLRQPIVNTIRVA
LPAHAQRLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDD
TRQAWEVVHDAKLEALHDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRA
LDKHPDTIRDWNAGNIPVLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQ
YQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDELVMARRESKREVQDL
LLEAVKRRETGKPLTSQGAMTR
>PD0694 conserved hypothetical protein
MLRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLS
QAGLVAGRRGAYGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHNQCS
ITHQCGIRSNWQLINTLIAQALRSITLAQMLAPLPAFSTHSQPRTIAASI
TTT
>PD1137 phage-related protein
MNLRPYQHTIVDFILTHPRCNLFVPMGLGKTVATLTALDVLLVVEDIAPI
LVIAPLRVAATTWPDEVAKFPHLRHLRVSVVVGSAAARRHALEQEADIYC
INYDTLKWLVEFYKDRWPFRMVVADECSKLKGFRLRQGTRRARALATHVH
TKVERYVGLTGTPAPNGLQDLWALMWMVDRGARLGTHFKAFIDRWFRAMQ
IGSDPHAVRFVPTPHASQEIQDKIRDICLSLDPHAYFDLCQPIVNTIRVA
LPAHAQRLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDD
TRQAWEVVHDAKLEALHDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRA
LDKHPDTIRDWNAGNIPVLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQ
YQQIIERIGPTRQAQAGHTRPVFIHHIVAAGTVDELVMARRESKREVQDL
LLEAVKRRETGKPLTSQGAIAL
>PD0906 phage-related protein
MSTLNKLLDKAKESCSRKSDAAIAEALKVSGQTIMQWRKDERRITDEHLM
AAIKLAKEDPSIAVLIREETARTEEEKKAWKTLYKRLTATAATLLIGAGI
TCPNPSQAQSISEKFSNENSHNAYYVHQVGAYKARCLASPKNGV
>PD1124 phage-related protein
MDALSARTFHIKQLVAAAGGPVEFSRRRGAGRWSQAQVSQWISETNPKGI
GHKLARAIEAELGLPNAYLDRLPSVDAPHPAGQHIKLDTYEFQAIDDDEK
LDPEANVLVDEVDVMLSAGNGVLIPEFIETKFRMPFPLPWLRHAHINPKD
VKLMRVHGDSMERTLFDNDRVMVNFADTRIRDGKVYAIAIGGEAKVKRLY
TLRNNGLRIVSDNQNKDSEGHRIYKDEIVPPNEMETVQVLGRVIDRGGSG
GL
>PD0871 Trp operon transcriptional repressor
MSREQAFEMLIKILCKTDSTDDMKLILECILTRSEMEDLIDRIRIYNELL
NTSNSQREVASKLGVSITKITRGAANLQDNNIKDFLRKKISY
>PD2093 conserved hypothetical protein
MRISPLSIQHILLINFLFISLASMTGCESKEKDQMIKEYIQNDLKVGQVV
RVTDLTKVTHGMVCTLYPYQSYIDEKVPQSVHINAYLKASGYIADESHWA
FVIAETETVNLYQFKRSRNLDILASHEIQSEHKTKLPEHFKPANCASLEN
AVVTKIESKNRFFLIMGEIE
>PD1016 phage-related protein
MSLTHIHRCGTVFGKECKNSVHSGTRIRKPCGFFTPARFYVGRAAAIQDP
QGESCPPSMSGFLPSRHPQVRRVRTSLLCSSNDIGDVFMTQLPAAVCFSG
KSLSIIDRDGTPYLSARELARALGYADERSVLRIYARRTDEFTEQMTCVV
KLTPQGEQARDIRIFSPRGCHLVAMFARTSVAAAFRRWVLDVLEVLPSIR
KTGSYTATGALVNDDVLYNIWFLCCHFKGLYEMSFENKIPQALSCLGARK
MGGRLYTHLVDGMDGGVLRIEKALGPHMEQAAQKVMGNARRHIQ
>PD0643 conserved hypothetical protein
MDAETIRKLIESGLPQARADVRGEDGVHFEATVICEAFRGKGPLARHRMV
YASIGDLMGGAVHALQLKTLTPDEE
>PD1730 phage-related protein
MNLRPYQHTIVDFILTHPRCNLFVPMGLGKTVATLTALDVLLVVEDIAPI
LVIAPLRVAATTWPDEVAKFPHLRHLRVSVVVGSAAARRHALEQEADIYC
INYDTLKWLVEFYKDRWPFRMVVADECSKLKGFRLRQGTRRARALATHVH
TKVERYVGLTGTPAPNGLQDLWALMWMVDRGARLGTHFKAFIDRWFRAMQ
IGSDPHAVRFAPTPHASQEIQDKIRDLCLSLDPQAYFDLCQPIVNTIRVA
LPAHAQRLYKAMEQDMFIALECGAEVEAFNAASKTIKCLQLANGALYTDD
TRQAWEVVHDAKLEALHDIIEEAAGMPVLVAYHFKSDVARLQRAFPKGRA
LDKHPDTIRDWNAGNIPVLFAHPASAGHGLNLQDGGNILAFFGHWWDLEQ
YQQIIERIGPTRQAQAGHQRPVFIHHIVAAGTVDELVMARRESKREVQDL
LLEAVKRRETGKPLTSQGAMTR
>PD1002 phage-related protein
MTQLPSAVCFSGQSLSIIDRDGTPYLTAADLARALGYADERAVSRIYNRH
SEEFTVEMSLVVNLTTKGFGSGNSEKPVRIFSPRGCHLVAMFARTSVAAA
FRRWVLDVLEVLPSIRKTGSYTATGALVNDDVLYNIWFLCCHFKGLYEMS
FENKIPQALSCLGARKMGGRLYTHLVDGMDGGVLRIEKALGPHMEQAAQK
VMGNARRHIQ
>PD1315 chromosome partitioning protein
MNKPSLPLKKRGLGRGLEALLGSKGGSSVPPTVAQEQLPGEVLRTLQTTQ
LQPSKYQPRREMSEAKLAELADSIKAQGVIQPIIVRELDVDMFEIVAGER
RWRASQLAGLTEVPVIVRELDDRTVVAMALIENIQREDLNPLEEAQALQR
LIDEFSLTHAEAAEAVGRSRAAVSNLLRLLELPLGIRTLLESHQLEMGHA
RALLTLTPELAAKLAKEAADQGWSVREVEHRAQQFAAGKVPDIRDKKSKS
LASAPAQPDIASLETELSERLGTKVAINHGRTGKGKLVIHYTDLDVLDGV
LERLRARAVG
>PD0993 conserved hypothetical protein
MAETGRKSHVPTDKSRLLAKQLTSFGIPHAEIALLMQISAPTLRKHYRVE
LDTGHIQANAKVAKSLFRLATHSTNPNITAIIFWLRTRAGWKDTQRVEVS
GRDGEAIEQKVGLALVDEK
>PD1133 phage-related protein
MGVNRIHTTGSTRNGRAEKRAPSTGLHRKDNIMNAPSEFHLQFESHAVRV
QLDEHKRRWFNANDICAALELLNPRAALAQHVDAENVSKRAAIDTIGRTK
HVNYLNESGVYALLIGSTKEAAKRFRQWLISEALPAAAARKAGQHIVPLH
HAPSIPSPFQPTEDHAMNAITPFQFESHAVRTVVDDHGEVWFVGKDVADV
LGYTNHNKALGDHCRGVPKRYPLQTSGGVQEIRIISEPDMLRLIVSSKLP
AAERFERWVFEEVLPTLRKTGNRPALDHSTHSANAITPFQFESKDVRIQL
DEANAPWFNANDVCAVLEFGNPHQAIESHVDVDDLQKLEVTDALGRTQRV
NHINESGLYSLIMGSTKPAAKRFKRWVTSEVLPTLRKTGTYSTPGALPTL
PGPTQDRVAALLLIGQFVSKVTGVKPGIAAAATLACIKSNTNLTTEEIRR
ALPALQEPLCLLNATQLGKQLHCSAKAVNQLLASSGLQFRNERDDWELTE
AGRVWGEAIPYSRNGHSSYQILWNPTVVDSLKVAA
>PD1939 N-acetyltransferase
MDTATLQWRLATPVDEPLLIPMIRRFYAEDATPFDSLRSLPALRTLLADP
TSGEVLLWLTSQGEHVGYAVLTLCCSLELGGRYVLLDELYLEPAVRGRGY
GRHAIAHLEARVQALGFDLLRMEVNHHNNAAKRFYLALGYRDEHRDLLSR
RLNETS
>PD0371 phage-related protein
MRCPCCGAAELIHDTRDMLYTYKSETTSIPTVTGDFCPACGEVVLDREHG
DRYSELVGLFQRQVNSAYVDPGYITKVRRKLDLDQRQAAELFGGGVNAFS
RYENGKTKPPLSLVKLFKLLDRHPDLLNEVKSS
>PD0389 conserved hypothetical protein
MCTLCRCSHTLRAMPTKKKDSYAIAVGERLAAARKAVVPAMTQSKAAELL
SKSLGKHITAATISGYESGHRLPHVFLVNALCSIYGTLTPAYVFHFDNAA
ETMQESNLLKYFRSADARDKRNITNLALHALNGLYPKSTDSE
>PD0199 conserved hypothetical protein
MFASIASSAPPPGWENLPFDATKCPVRDVLDHIGDKWSLLILLTLVPGPT
RFSAIQRAVPDISKRMLTQTLRHLERNGMIGRTVYPTKPPRVEYALAPLG
ESLLVPVMHLLKWASTHHDEVRSARDRFDHAQQGGLAIASRI
>PD1470 conserved hypothetical protein
MSPHEADNQLDLTLIARIVEGALLASNQPLTLAQLQGLFPNDPPIPPDSI
QRAIELLQHTCTERSVELVEVASGFRFQLKADVHAWVSPLWTERKTKYSR
ATLETLALIAYRQPITRGEIEQIRGVAVNSNIIHTLEEREWIRVVGHRDA
PGKPALFGTTKAFLDYFGLKRLDELPPLSDLKDIGELEPQLPLHNNHRHT
AQLQIQTDQTPNRSISGTTAPISGISPQPTQEVNTDTQSNRPDNNRP
>PD2046 conserved hypothetical protein
MTAVPKVAITSPAALLAFLRGVERRAVVLVELQTGTMSAAQAVLPAAIRI
FGAEAVDCPFAEWSIRFWSLLCGAPVLRRPPLTGQRWPKELVSLQAMAVE
DRLALLLRIVAGLDEAQAAVVLGKPLETYYQALARACPRDVQGRPNPAAW
RALAEAAQQRVRSLSIKRLVTTTVLPSPSPKISVAESAVSRFPAPIRFER
NWVVIAGLTLGVIFMLNLAWNRNIWSVPDPQYVSKGFPAVLPLLEDSPVV
IEALPDYVSSASPQVISPDLADRAMLEDSALEAARQADFFAWYVAGQPIP
PDESDLAPVVAFSIRHNGNRR
>PD1380 cold shock protein
MQSGTVKWFSDQKGFGFILPDDGTPEVFVHYSGINSKGFRSLHEGQRVTY
DVTQGPKGPQASNITPI
>PD0421 act, transcriptional regulator
MQNMFDGVQLFVEVVEAGGFAKAGKRLSLTRSTIGKAIARLEMRLGVQLF
QRTTRVQSLTEDGQQYYERCLRAIKELRAGEAMLEQGRREVAGRLHVSLP
VLFGRQCVAPILRTYAREHPQLELELNFSDHHVDLIADGFDLAVRNGPLG
NGTTLRARRLGNQRKILCASPTYLAARGKPHTLADLADHDLLTYCRNDRN
MAWTLPDATGALVDIPITSRLRCNDLEVIADTAVDGMGVAWLPYWLLMER
MQRGELIGIWGDRPSAVIECHVVWPAAQHVPLRSRLAINLLAAELPKYLE
A
>PD1958 actR, two-component system, regulatory protein
MNHSAAKIGLLVDDDTLYLRTLQRSLGRRGVDTVTATDAVSALTAARSAL
PSFALLDLKLGQDSGLALIQELRAIRSDMRILLVTGYASIATAVEAIKRG
ADEYLPKPANINTILRAISEDTANRLTPDKDESALHTMTPLSRLQWEHIQ
QALHETDGNISAAARLLGMHRRSLQRKLTKRPSPGTLHDSDH
>PD0268 agmR, transcriptional regulator LuxR/UhpA family
MSEMLILVADDHPLFRNAVIQVLRENFQDAQVLDASSAATLRSALQAYPQ
TELVLLDLAMPGARGFSALLHVRGEHPDIPVVVISSNDHPRVIRRAQQFG
AAGFIPKSSPPETITEVVAAVLDGCTWFPPMLVECSEADTQLAVKLARLT
PQQFRVLLCLADGLLNKQIAYELGLAENTVKVHVTAILKKLECYSRTQAA
VLVKSLEPEA
>PD1276 algH, transcriptional regulator
MSMPTMTLVNQLLIALPSMPDPHFARGVALICQHDSNGAMGVVLNRPSEY
TLGEVLFQMGIETASETLREQVVLAGGPVHPDRGFVIYDSEHVWGPSLLI
GDGLYLTTSRDVLAAMAEGSGPSRALVALGCAGWAAGQLELELVENNWLM
VPADASLLFDTALEQRWQRAAGRIGVDLFRLTDYTGHA
>PD1153 algR, two-component system, regulatory protein
MLRILIADDEPLARERLRVLLQAQMQHLEVVAEAENGEQVLHDCQRLNPD
LVLMDIAMPGIDGLETARYLRYLPACPAVVFCTAYGDHALSAFDVEAIDY
LMKPVRAERLHAALKRVQTFVAGRLREPQTSCDETPRTHLCVRIRGGLRL
IPLDQVRYLQADEKYVVICHEQGEDLIEESLKSLEKEFSDRFVRIHRNCL
IARAELTELRRCSDGQVQAVLRNVVTPLAVSRRCVPLLCDQLRLSAVLTG
RW
>PD1284 algU, RNA polymerase sigma-H factor
MAETKQPQSLDIELVRRVQCGEYAAFDTLVRKYQHRVIALIGRYIADWSE
CQDVAQETFVRAYRGICNFRGDAQFSTWLHRIAVNTAKNHLAARNRSRLS
NEAEIEEAEQFNHSSHLSDTNTPERELMRQELEQIVMSAVQALPEEFRTA
FTLCEMEGLSYQEIAQRMDCPIGTVRSRIFRAREAIDIELRPFLEINNIT
RKRYRV
>PD0520 attO, transcriptional regulator AraC family
MTGACTDRLEALLNHFPVRARMFHSGTLCGITDFSVPAEGGQVHLLRSGA
MDVIHPGRELLQVSVPSLLFYPRPMSRRFVADAQCGADLVCAQLDFEGGS
ANQVAGALPDVVCLPLENIDGAAQVLELLFDEAFGDHCGRRVLIDRLFEV
VLIQMLRYLMETGGVAGGMLAGLSHPKLRKVLVAMHEQPERGWSLEALAY
LAGMSRSVFAGTFRRVVGCTPGVYLQGWRVKLAQQALRQGRQLLKTIAVE
VGYGSEAALSRAFKAQCGMTPREWRQRQDED
>PD1072 baf, transcriptional regulator
MNDWLFDLGNSRFKCASLREGVIGPVTVLPYLTETMDAFALQELPRGRVA
YLASVAAPAITTHVLEVLKIHFEKVQVAATVAACAGVRIAYAHPERFGVD
RFLALLGSYGEGNVLVVGVGTALTIDLLAANGCHLGGRISASPTLMRQAL
HARAEQLPLSGGNYLEFAEDTEDALVSGCNGAAVALIERSLYEAHQRLDQ
SVRLLLHGGGVASLLPWLGDVVHRPKLVLDGLAIWAAVAANV
>PD1367 colR, two-component system, regulatory protein
MRQTKETSGLVLIVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAVE
NSYDVVVLDLMLPRLDGIEVCRQLRKDARKSTPVLMLTARDTLDDKLTGL
GFGADDYLTKPFAIQELEARLRALIRRERRQVGAEVLKLADLVLDPVSLR
ATRAGTELQLSPIGLRLLTILMRESPRVVSRQEIEREIWGNCLPDSDTLR
SHLYNLRKVVDKPFGRPLLHTVQSAGYRMVDIEQSMD
>PD1919 colR, two-component system, regulatory protein
MRILVIEDNSDIAANLGDYLEERGHAVDFAADGVTGLHLAVVHEFDAIVL
DLNLPGMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYL
IKPFALQEVEVRLNALSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQ
LNPTGLKILQALMEATPAVVTRQDLETRVWGEELPDSDSLRVHIHGLRAV
VDKPFDVPLIQTRHGIGYRIATPDA
>PD1839 cysB, transcriptional regulator LysR family
MTLTQLRYLVAIADADLNITLAAARIHATQPGLSKQLKKLEDELGFLLFV
RRGRSLESVTPAGEEVIERARVMLVEVNNIRTYAANQRREYQGQLTLSTT
HTQARFVLPPAVALIKQAYPQVTVHLQQAAESDVLDEFGQGGADIAIVST
AGSAPSSGLAVPLYRWRRLVIVPCGHPLDTVGCTLDLAALAEYPLVSYDS
SIRPMSSLQRAFASLGLESRIVLTALDADLIKTYVRAGLGVGILAEMAVN
AVDTDLRAWPVPAPIPECIAWAVLPRDRVLRDYVLELVHALAPQIDKRDL
RRVLNGHQEPDWPSPPSWQSLTQTITH
>PD0205 deaD, ATP-dependent RNA helicase
MLSGVLMSNPSSTPLLFADLGLSDAVMQAVTKIGYETPSPIQAATIPALL
AGRDVLGQAQTGTGKTAAFALPLLTRTVLNQVKPQVLVLAPTRELAIQVA
EAFQRYAASISGFRVLPVYGGQSYGQQLAALKRGVHVIVGTPGRVIDHLE
RGTLDLSELKTLVLDEADEMLRMGFIEDVEEVLRKLPASRQVALFSATMP
PQIRRIAQTYLQDPIEVTIATKTTTAANIRQRYWWVSGLHKLDALTRILE
VETFDAMIIFVRTKAATEELAEKLQARGLTAAAINGDMQQAQRERTIHQL
KDGKLDILVATDVAARGLDVERISHVLNYDIPYDVESYVHRIGRTGRAGR
SGEAILFVTPREKGMLRQIERATHQPIEAMQLPSVDAVNDTRVTKFFGRI
SNALVVGAEIDFYRKLLQRFESEHNVPAIEIAAALARLLQGDSPFLLSVP
TRPQRERSELASEHHVKRPSSFKQTERPNNTEHPKRPQRNAPARNVPEFG
MESYRIEVGRMHGVKPANIVGAIANEAGLESRYIGRIDIRDDHSVLDLPA
EMPHEILQHLKKVWVSGQQLQMRRIDTTETTAPAREFKSKPGGAGKFPPK
PHHNKSTKPKPPYSG
>PD0811 fis, DNA-binding protein
MNVVPSRPEVSRGSPKSPLREHVAQVVRRYLRDLDGCDANDLYNMVLREM
EIPLLVEVLNHCEGNQSRAAALLGIHRATLRKKLKEYGLV
>PD1984 gacA, transcriptional regulator
MTIKIFLIDDHTLVRVGMKMILSNELDLEVIGEAETGEAALPQIRELRPN
VVLCDMHLPGVSGLEITEKLVKGNYGSRVIIVSVLEDGPLPKRLLEAGAS
GYVGKGGDANELLRAIREVALGKRYLGNSIAQNLVLSSLEGGCSPFDVLS
PRELEIALLLIQGLSQGAIAKRLCLSPKTINTHKVRLFAKVDVRDTIALA
RLAIQYGVSTPEKYSLDKTI
>PD0400 greA, transcriptional elongation factor
MRAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAA
REQQSFIEGRIKQLEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDE
ESRYQIVGDLEADIKQGLVAISSPVARALIGKQEGDTIVIEAPAGRREYE
VVAVEYIS
>PD1891 hlyU, transcriptional regulator ArsR family
MVNEMRDNTVPHMTREDMEKRANEVANLLKTLSHPVRLMLVCTLVEGEFS
VGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLV
NALYTIFCTQEKQA
>PD1372 hrcA, heat-inducible transcriptional repressor
MCASFSPTLDSRSRQLLRTLISCYIQNGEPIGSKTLAQQAGLDISPATIR
NILADLEELGLLNSPHTSAGRVPTAHGYRMFVDSLVQMQPPSEDDIRRLR
VEMTGGGTQTLLGSASEILSAMTHFVGVVSAPRREQFVFRHIDFVPLDAR
QIMAILIFADNEVQNRVIEPRRVYEPGELERVSNYLNAHFIGRTLADIRT
TVLCELRKAKDEMEQLLAHSLDLASQMLVPNDSEDIVVTGQTRLMALQDL
SDMDRLRELFEIFASKREILQLLERTIDAPGVRIFIGEETGMVSMEDISL
VTAPYAAHGQVLGVLGVIGPKRMAYDRVIPLVQVVAQVLGTALEPPTMP
>PD0041 korB, transcriptional repressor
MLHTLFELDRATAMSLFGNKIKPTQEHNQLATVAFSGERIEEIDPELIDL
EKQMRSKDNPGFTIESLMELGNDMKRDGQHEPVILRKNSKKPGRYLMVAG
ERRWLACKAVDIKLKAVIRELTDDQVRRVQRAENIQRENLTQLEIAVALR
DDKERLGTLEKVAAEWNKGINWVSERINFLEVVETNSLTSQAVTEGITAD
ITAINDLYRLEKVNQTAAKTIIDQAKVDPGINMRKTVREKLQNAKSTTNE
KNATTDSRMQESKTDFQEGETHLTNISNQEKPTTVASAPLPPDAAQLVAL
AAKQMETLCTEVSALSKILHQRQDVISALGDVLQNVVQAQAALFRTRHVL
ASLANLK
>PD0092 lexA, LexA repressor
MSLSDIQQAILSLITNNINADGVSPSQTEIARAFGFKGVRAVQHHLDVLE
QQGMIRRIPGQARGIRLKHLTEVDEVALALQSKDVLRLPVLGRVAAGQPI
GADIGEDHVVLLDRVFFSPAPDYLLRVQGDSMRDEGIFDGDLIGVHRTQD
AHSGQIVVARIDDEITVKLLKISKDRIRLLPRNPDFAPIEVRSDQDFAIE
GLYCGLLRPNR
>PD0033 mfd, transcription-repair coupling factor
MSPSSFPSPLLPRAGQLRAFWRAPVSPTALAWHIACAAQAHRGPLLLVTH
DNHSAHQIEVDLQTLLAHCSGLPVIGFPDWETLPYDQFSPDPNIVSQRLA
TLHRLPSLARGIVVVPVQTLMQQLAPLSYIVGGSFDFKVGQRLILDAEKQ
RLERAGYRNVPQVMDPGDFTVRGGLLDVYPMGTDVPLRIELLDEEIDSIR
TFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERFDLDTRRSA
LYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTAPG
VSNAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRI
EVWSAEHAHIDKAEVLDEQPLPVATKDVSVGQALRTFLADYAGRVLIAAT
SPGRREVLLELLATADLQPEVLPDFRSFFLSAAEVSDLGEANRDSGNGVS
GSNDADAAAFHVIASQGGSLPTFAITVAPLEDGFSLSVPPIAVLTERQLF
PERVNPVRRSRRVGREPEAIIRDLGELSEGAPIVHEDHGVGRYRKLITMN
VSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQW
SKAKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFE
ETPDQLAAIETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGK
QVAVLVPTTLLAEQHYRNFRDRFADYPIRVEVLSRFKSTKEIKAELQKVS
EGTMDVIVGTHRLLQPDVKFKDLGLVIVDEEQRFGVRQKEALKSLRANVH
LLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTFITPWDNALLHE
AFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPEREL
ERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLR
GRVGRSHHRAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDL
EIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGQEE
RGAEVDLHIPTLIPEDYLPDVHTRLTLYKRISTARDSNALRELNVEMIDR
FGVLPETAKHLFAIAELKLQATALGISKLELGENGGRIIFGAKPIIDPMA
VIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAARGLLAALTP
>PD0193 nusA, N utilization substance protein A
MSKELLLVVDVVANEKGVPRQIIFDAIEVALASAAKKRYQDRDILTRVTI
DQKNGNYETYRRWEVVADDVVMESPERQIRLMDALDEADGVEVGDYIEEQ
IENPDFGRISAQAAKQVIVQRVREAERQQVVDAWKNRVGELVTGVVKRVE
RGNIYVDLGGGTEAFIPKDKGIPRDVIRPGDRVRGYLAEVRSESRGPQLF
ISRSAPEFMIELFKLEVPEVGQGLVEIKGCARDPGDRAKIAVIAHDNRTD
PIGACIGMRGSRVQAVSNELNGERVDIVLWNENPANFVINAMAPAEVQSI
IVDEERHSMDLAVAEDRLAQAIGKGGQNVRLASRLTGWQLNVMTAEQVAA
KSEAEQLAARRLFMDRLEVDEEIASILVMEGFNTIEEIAYVPVGELLAVE
GFDEDIVEELRARARDALLNAALAEEEVLEHSGPAPDLLELNGMDEITAH
ALAAHGVRTSEDLSDLAADEIVEFDIQGMTVQRAAVLILAARAEEIARLE
RGE
>PD1743 nusB, transcription termination factor
MSKVSGGGPCSRRRDGVDPALRSRARRRALQAVYAWQISGGVAKQVIAHF
AHEQAYEVADLVYFEDLVEGVLTHCAELDEKLTPYLDRTIEEVDAIERAV
LRLGAYELLYRQDVPYRVVINEAIMTAKRFGSKYGHTYVNGVLDRAALAL
RKVEVLG
>PD2006 nusG, transcription antitermination factor
MKRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSG
QKRRSEHKFFPGYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGT
ADRPLPISSDEADVILRRVQDGAEKPRPKVLFEPGQMVRVIDGPFNDFDG
LVEEVNYEKNRLRVAVLIFGRPTPVDLDFGQVQKS
>PD0747 oxyR, oxidative stress transcriptional regulator
MNLRDLKYLIALADYKHFGRAATACFVSQPTLSTQIKKLEGELGVSLVER
APRKVMMTPAGREAAIRARSIVAEVEEMKEAARRSRDPEAGAVRLGIFPT
LGPYLLPHVVPSIRYRFPQLELLLVEEKSDELLAQLREGKLDAALLALPL
HDEQLHTEFLFEEPFVLAVPEGHPLATRREMTMEELADERLLLLQDGHCL
REQALDVCHMTGASEKSEFQATSLETLRQMVVANVGITLLPLLSVKPPVV
CSESIRLINFPLDKQPSRRIAMVWRRSSAMTTFLERFSSMFKELPKELFD
LPQTAVLYKGR
>PD1970 phoB, two-component system, regulatory protein
MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLI
LLDWMLPGTSGLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVD
DYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHRVYAGH
VQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWGSGVYIEERTIDVHIR
RLRRTLEPFGLDDMVQTVRSAGYRFSGAIQI
>PD1679 popP, two-component system, regulatory protein
MRILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGII
DLGLPKMSGMDLVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLV
KPFHVEELLARVNALLRRAAGWSKPTLECGSVALDLAAQTVSVNGTNVDL
TSYEYKVLEYLMVHAGELVSKADLTEHIYQQDFDRDSNVLEVFIGRLRKK
LDADGDLKPIETVRGRGYRFAIARNEN
>PD0175 prsX, transcriptional regulator MarR family
MESLETTDLRLAVTCQRFPAYSRNQAVLLGLVKHIYKRIHTDCNRFLRRF
GLSYPEYDILMIIYGTEDFSLTPTEVAESSGEKPANVTRLTNSLCEKGLI
RRSIHHNDRRKVTLTLEPAALELLDKALPEACVQMEAQVCNLSEQENQEL
EHLLKKMLSMIDNSTDKQ
>PD1705 recG, ATP-dependent DNA helicase
MPRARSHAIDLNVAGNAPLSVLPRVGPVLAGKCAARGIFTLQDLWLLLPL
RYEDRTRLTPIAELQDGVAVQIEARVEAVERSFRYRPLLRVVLSDDAHHI
LTMRFFHFRAAQIARFTVGTRVRAYGVPKLGQYGWEIVHPSYRILAPGEA
VSLNDCLDPVYPVIDGVGPAIVRQLIREALEHLPTDAALELLPDVWLSDL
GLPTLRTALLIMHRPPLDADIARLMVGTHPAQQRLSLEELLSHQLSLRRQ
RIALQRHSAPALPDGAALVASLLHALPFHLTAAQQRVFAQIAADVAKPVP
MLRLVQGDVGSGKTVVAALAALLAVEQNKQVALAAPTALLAEQHFINLRD
WLEPLGVRVYWLAAKVTGKARLQALNDVASGDAQVVVGTHALMQESVVFH
DLALTIVDEQHRFGVHQRLLLRDKGATDGIVPHQLVMTATPIPRTLAMAA
YADLDVSVIDEMPPGRTPVQTNVLSAERRPELVERIRLACAQGRQVYWVC
TLIDESQTEAEQAPPSSNDIGHRSEVQAAQATYEALSAQLPGVRVGLVHG
RMKAAEKQRTMRAFKCNEIDVLVATTVIEVGVDVPNASLMIIENAERLGL
AQLHQLRGRVGRGSVVSSCVLLYQPPLSMLARQRLQIMRQTNDGFAIAEK
DLELRGPGELLGTRQTGLAAFRVADLARDAHLLPRVYSLANMLLDESPQL
ADQVIARWIGSAVRYASA
>PD0563 relA, ATP:GTP 3'-pyrophosphotranferase
MNVSLFPQELDVLLRRSGVSTLNPELSQGLVQACQALPSEAGQQVAWPVL
LDMLDALVVLSADETLLIAALLFDLPMLRPMLPVLPWRSSTHQQMVGSLL
DGQDAAEQVWTLHAGCAAGRNGEGLRRLLLALVHDLRVVPILLARQLAKM
RAAGVLLESQRRALAQLTRDIHAPLANRLGIWQLKWELEDLAFCYLESEI
YRSIASALDESRVARERYISVIAMELSRVLAEHGVCAEVSGRPKHIYSIW
RKMQKKRLHFEQVYDLQAVRVMVEDMAACYAALGVVHALWAPVPGEFDDY
IARPKANDYRSLHTAVLGPEERTVEVQIRTHEMHAHAELGVAAHWKYKED
GKGAERDFDRKIVWMRQLLEQAQEGEFGEVVEALDTELLEDRVYALTPKG
EVIDVPQGATPLDFAYHVHTMVGHCCRGAKVNGRIVPLTYRLRSGDRVEI
LTAKEANPHRDWLLRANGFLASRRSRDKVRAWFNKIERARNVQVGKESLD
RELKRVGQQYVDLSPIARRFHADSVDDLYVQIALGNIGPNQVSRALLETE
RVVAFAPLARPSKKRHGLSKSMFIVQGVSNILVQLARCCQPVCGEPIAGY
LTLSRGVTVHRADCAVLMRLNAMHPQRVLSVEWGSQLSGSYEVEILVRAV
NRRWLLKDIADVIAQEDAHMLEMSSDAFRDNGYLQFRVRLRLSHHRQLAA
LLGKLDGLSGVNEVRRMG
>PD2053 rhlB, ATP-dependent RNA helicase
MSDKPLTNLNFSSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIA
GQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNPEDPRALILAPTRELAIQI
YNDAVKFGGNLGLRFALIYGGVDYDRQREMLRKGADVVIATPGRLIDYLK
QHEVVSLRVCEICVLDEADRMFDLGFIKDIRFILRRLPERCSRQTLLFSA
TLSHRVLELAYEYMNEPEKLVAETESVTTTRVRQRIYFPAEEEKIPLLLG
LLSRNEGMRTMVFVNTKVFVEGVARALDEAGYRVGVLSGDVPQRKRETLL
NRFQKGQLEILVATDVAARGLHIDGVNYVYNYDLPFDAEDYVHRIGRTAR
LGADGDAISFACERYAMSLPDIEAYIEQKIPVAAVTAELLAPLSRPGRAS
NGNGDTVGDISPHSRDVLVAQEWRRGKPRGSPGERDGRIRVCKGTRSDGG
GGRRRTKFRLETERDSSVDGAVTPVFGVSTGIVSAPGKEVGRNIGLRRRS
RSMDSGESGHVVATADQVAAKSGSQPSLLGRIGRRIRSLLSMF
>PD0157 rhlE, ATP-dependent RNA helicase
MNFETLGLLPSLLRALSEQGYEIPTPIQQQAIPLALAGHDLLAAAQTGTG
KTAAFGLPVLQRLMAASSNVGAGKPRALVLTPTRELATQVHDSLRGYAKY
QRVSSAVIYGGVGMGNQLDVLRRGVDLLIACPGRLIDHIERRSVDLSGVG
ILVLDEADRMLDMGFLPSIKRILGKLPRQNRQTLLFSATFAEPIKQLALE
FMCRPREVMVASHNTVAETITHRVHPVDVSRKRELLLYLLAQDSREQTLV
FVRTKHGSDKLATFLEKYGIKTAAIHGNKTQGQRLRALNSFKAGRVTVLV
ATDIAARGIDIDQLPKVINYDLPMVAEDYVHRIGRTGRNGVQGEAISLVT
QEDAKLLRQIVRLLDRDMDIRDVPDFEPQVPIRWGNSAPGKSKQPAGQHP
PRKSQHRRAFGKASVHTTPALKKQSGVQHSNGSRNRDGMLPVHQRG
>PD2055 rho, transcription termination factor Rho
MPEGFPIYSLSDLKKMPAHKLLEIAEQLNIHEGVARARKQDVIFALLKVL
TRHGEGVFADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIRRFNLR
TGDHLSGRIRFPKDGERYFALSIVDTINGEPLEASKNKILFENLTPLFPR
KRFRLERADGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVA
TAITTNHPEVHLIVLLIDERPEEVTEMQRTVRGEVISSTFDEPAARHVQV
AEMVIERAKRLIEHKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDAH
ALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNCE
LHLNRRIAEKRVYPAIDINRSGTRREDLLIESDLLQKIWILRKLLHPMDE
IAAIEFVLDKMKNTKSNDEFFGSMKR
>PD1290 rnc, ribonuclease III
MISSKASDYQQRIGYVFTDPSLLLQALRHRSAGTPHNERLEFLGDSVVNL
LIAEALFQRWPRADEGALTRARSELVRETSLASIARTMQLGEQLILGPGE
LKSGGHRRDSILADAVEAVIAAIYLDADLATCRTVVLPWFETALTALPVG
KPEKDPKTRLQEWLQARQWSLPVYELIFESGDPHTKHFRVSCTLGELKLR
TEGEGSSRRLAEQDAASHAIDQLDSNK
>PD0405 rpfG, response regulator
MHDVFAMQSGELSSLQHLDSCDAVHVVLNIVIVDDQMSARTMLRHVIEDI
APHLQVFDFGDPSEALAWCEVSQVDLLLLDYRMPDMDGLEFAMRLHQLPN
RRDIPILLITIVGDEPIRQAALDAGVIDFLIKPIRPRELRARCNNLLQLR
QHSERAKQRVLSLEQRLRAVMSEFEERERETVSRLARAVEYRHISSSTYL
ERMSQVAGLIAEQLGLSEEEVRLIQSAAPLHDIGKIAIPDAVLLKRSTLN
EEEMAMMRRHPRIGCELLSGSQNRCIQLGALIALRHHERYDGSGYPDGLV
GEAIPLEARIVALADVFDALISLRPYKQAWTMEAAITYLYAQRGRLFDPH
CVDALIRGRDQLQRICVKFSTALARPGVWDAKES
>PD0461 rpoA, RNA polymerase, alpha subunit
MTVTVSQVLRPRGPQIERLTENRAKVVLEPLGRGYAHTLGNALRRVLLSS
IPGFAITEVEIDGVLHEYTTVEGLQEDVLEVLLNLKDVAIRIHSGDTATL
SLFKQGAGVVTAADIKTDHNVEIINDGHVICHLTKDTTINMRLKIERGFG
YQPAVVRRRPDDENRTIGRLILDASFSPVRRVAYVVEAARVEQRTDLDKL
IIDIETNGTIDAEEALRTAADILTDQLSVFGDFTHRDRGTVKPASSGVDP
VLLRPIDDLELTVRSANCLKAESIYYIGDLIQKTEVELLKTPNLGKKSLT
EIKEVLGQRGLGLGVKLENWPPPGVSQYGMLG
>PD2001 rpoB, RNA polymerase beta subunit
MKDLMTSYSFTEKKRIRKDFGKHRSILKVPFLLAIQVDSYRAFLQGDVES
SQRKDIGLHGALKSVFPIVSYSGNAALEYVGYKLGEPMFDERECRQRGMS
YGAPLRVTVRLVIYDRESSTKAVKYIKEQEVYLGEIPLMTENGTFIVNGT
ERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARIIPCRGSWLDFEFDPK
DALFTRIDRRRKLPVSILLRALGYSNEEILGEFFEINTFHINPDEGVQLE
LVPERLRGEILSFNLTDGGSVIVEAGKRITARHVKQLEASGISALAVPDE
YLIGRILSHDVIDATTGELLASANSEVNEDRIIAFRKAGIESVGTLWVND
LDRGAYLSNTLRIDPTRTQLEAQVEIYRMMRPGEPPTKEAAQNLFHNLFF
TFDRYDLSMVGRMKFNRRVGRKEVAGEPVLYDKKYFSDRNDEESRRLVSK
LGETSDILDVIKGLCEIRNGRGVVDDIDHLGNRRVRSVGEMAENVFRVGL
VRVERAVKERLSMAESEGLTPQELINAKPVAAAIKEFFGSSQLSQFMDQN
NPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHLSHYGCLCTIETPEGPN
IGLINSLAVFARTNQYGFLETPYRKVVEGRVTDEVEYLSAIEENQYVIAQ
ANTLTDDNGQLTESFVPCRFQGESLLKPPSYVHYMDVSPMQTVSVAAALV
PFLEHDDANRALMGANMQRQAVPTLRAQKPLVGTGIERTVARDSGVTVNA
RRGGVIDQVDAGRIVVKVNESEIIGATDAGVDIYGLIKYTRSNQNTCINQ
RPLVNVGDIVASGDVLADGPSTDIGELALGQNMLIAFMPWNGYNFEDSIL
LSERVVEEDRYTTIHIEELTCIARDTKLGSEEISADIPNVSEQALNRLDE
SGVVYIGAEVRAGDILVGKVTPKGESQLTPEEKLLRAIFGEKASDVKDSS
LRVPPGMDGTVIDVQVFTRDGIEKDKRAHQIEEYEIKRVKKDFDDQFRIL
EGAIYARLRSQIVGKVVNSGVDIKKGEVITDPYLDGLKKSDWFALRMKDE
VAVEAIDRAQKQIQAYQKEFDQRFSDKRSKITQGDDLAPGVLKMVKVFLA
VKRCIQCGDKMAGRHGNKGVISNVVPVEDMPFMEDGTPVDIVLNPLGVPS
RMNIGQILEVHLGWAAKGLGHRIQRMLEANAAIADLRKFLNEIYNHDKSL
VGERVDLSQFSDDELLNMAKNLTDGVPMASPVFDGASEQEIKRMLDLAEL
PAGGQTQLYDGHTGEPFDRKTTVGYMHYLKLNHLVDDKMHARSTGPYSLV
TQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVQGRNQM
YKNIVDGDHQMVAGMPESFNVLVKEIRSLAINIELEDN
>PD2000 rpoC, RNA polymerase beta' subunit
MKDLLNLFNQQRQTLDFDAIKIGLASPALIRSWSFGEVKKPETINYRTFK
PERDGLFCAAIFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRE
RMGCIELASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFEAYVVTEPG
LTPLERRQLLTEEQYLQARQEHADDFDASMGAEAVYELLRMIDLQSEMAR
LREEIVVTGSETKLKRLTKRIKLIEAFIESGNRPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLCRLLELSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
ARSVIIVGPNLRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKGAKKL
VEREEAEVWDILEEVISEHPVVLNRAPTLHRQGIQAFEPVLIEGKAIQLH
PLVCTAFNADFDGDQMAVHVPLSLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMSRALENKKGEGMVFANTSELKRAYDNSVVELHAKVKV
RITEIETDDQGLRNKASSIVDTTVGRALLSEILPEGLPFVLVNTEMTKKN
ISRLINSSYRMLGLKETVVFADKLMYTGYAYATRAGVSICIDDMLIPIEK
KEILGEAEQEVLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDT
IGTERVVNADGEIVDQKSMNSLYIMADSGARGSPQQIRQLAAMRGLMVRP
DGSIIETPIKANFREGLSVQEYFNSTHGARKGLADTALKTANSGYLTRRL
VDVTQDLCVVQLDCGTAGGLTMTPIVEGGDVVEPLKDRVLGRVVAEDVLL
PGNDDEPIVTRSTLLDEQWVAKLEEAGVQSVKVRSPITCESPFGVCALCY
GRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTALSAAAIDN
ITVKTSGSVKFTNLKYVEHANGTLVAVSRSGEISVLDTHGRERERYKLPY
GATINVKDMAEVKSGQILANWDPHNHPIVSEVAGFVRFIDFVDGVTVIEK
TDDLTGLSSREIADLKRRGSQGKDLRPLVRIVDKKGNDLTIPGTDLSAQY
LLPPRSIVNLQDGAPVGIGDVVAKIPQEASKTRDITGGLPRVADLFEARR
PKDPAILAERSGVISFGKDTKGKQRLIIKDADGSEHEELIPKYRQIIVFE
GEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKIND
KHIEVITRQMLRKVEIVDQGNSKFLNGEQVERQRVIDENAKLIARNELPA
KYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKEN
VIVGRLIPAGTGQTYHSQRRYSSVGLTESEMETLVGRSTSSGTEVTSPSK
DAIPLGG
>PD0593 rpoD, RNA polymerase sigma-70 factor
MRSPIMSNERTAQQSDIKQLISKGLEQGYLTYAEVNDHLPEDLVDPDQIE
DIIGMINGMGIEVHEVAPDAETLLLNEGNTGNREVDDTAAEEAAAALSAL
DTEAGRTTDPVRMYMREMGTVELLTREGEIAIAKRIEEGLSEVQAALGAF
PLSTELLLSEYELHKEGKRRLTEVVVGFNDLIEEDNSVTSSVDVTDESIV
EVDEEDDDSVGNDEDAPMIGPDPAEVASRIESLSTEYAKFKKLYAKHGPE
HKAVIKVREDVAAIFVTFKLSLPLTDLLVQQLQNMVNSVKDHERKVLHLA
TNVAKMPRKDFIRSWENNQTNLEWVEDAIKRKQKWSSALRDIKDQITAEQ
QASIDLEKVNSLTLADIKEINRMMVYGEAKASKAKKEMVEANLRLVISIA
KKYTNRGLQFLDLIQEGNIGLMKAVCKFEHRRGFKFSTYATWWIRQAITR
SIADQARTIRIPVHMIETINKLNRISRQMLQQFGREATPEELAKEMDMPE
DKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDPNVESPVDTTTNVNLS
ETVREVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIE
AKALRKLRHPSRSEQLRSFLDID
>PD2048 rpoH, RNA polymerase sigma-32 factor
MGYLSMTRNTSMVLVGNNFPVPNALGSLEAYISAVHQISVLSVDEEQLLA
RRYRDQQDLDAARELVHSHLRFVVRVARGYSGYGLSLGDLIQEGNIGLMK
AVKRFDPDMGVRLVSFAMHWIRAEMHEFILKNWRIVKVATTKAQRKLFFN
LRKSRTRLGWMNAEEVSAVARDLNVSEREVLEMESRLSGRDIGFDAPEED
NAPPSPVGYLIANDGDPSQAYERGNSEETQLRLLQEGLSVLDTRSRDIIQ
RRWLETDKKITLQELAEEYGVSAERIRQIEANALKKMKVLFAA
>PD0637 rpoN, RNA polymerase sigma-54 factor
MTLKARLRTSIGQQLVMTPQLHQSIRLLQMSNAELQLEITAAIESNPLLD
WAENQSSETSEATEREVETEDWQAKESAWDINGSKSNENDDNNPAERLTT
GNTLTDHLLWQLHLSPLSARDYQIGTVLIDAIEEDGYLRELLSTLTATLA
PLSVDESELLPVLRHIQSFDPSGVAARSLAECLTLQLKSLREAIPGRTLA
LQIVNSPLLEQLPRSGVTGLARELKRPSQDVQQAVELIRGLDPRPGKKIG
DLEVGTYVVPDCVIWRQHGLWQAALLERAFPQVVLHRGYEQLINSCNDAN
ASYLRNQLQEARWLLKGLEARGETLLKVVNSLIRHQAGFLEFGQHALRPL
TIRELATELALHESTVSRAIAGKYVRTPRGTLPLRTFFASGISTDSGGET
SSSAIQAIIRRLIETENPRKPLSDAKLAELLKTSGIPVARRTIAKYRDAM
NISASHERVRVL
>PD0719 rpoZ, RNA polymerase omega subunit
MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVM
ALREIAARKINSKMIDEIEKAERERAEREAMEWAAAEVVADEDMSKSDD
>PD1707 spoT, pentaphosphate guanosine-3'-pyrophosphohydrolase
MLLLIGWHSLPNMTHVSLIQTDHAALPLADTKLPDYFLQLERMAAHLTHE
QLMALRRAWVMGMAAHAGQTRKSGEPYITHPVAVACVLADLGMDVETLIA
AILHDTIEDTSVTREILAAEFGETVADLVDGVTKLDKLKFRNRQEAAAES
FRKMLLAMSRDLRVIMIKLADRLHNMRTLGAQSIEARSRIARETLEIYAP
IAQRLGMALMKSELQNLGFRALHPWRHAIIEKHILNQPVVRREAMERVEL
QLSGRLIQEGVQHRVVSRIKTPWSIYNKMHDDNKSFDQVMDVFGFRLVVK
SVADCYHALGIVHGTLKPLDGRFRDFIAIPKTNGYQSLHTVLFGPYGSPI
EVQIRTEEMDMIAERGIAAHWAYKCGSDSPNSAQSRVHAWIAELLESQRT
AISSMEFLDNFKVDLFPDEIYLFTPKGKIFALPKNSTALDFAYAVHTDIG
NHAVTSRVDKQLMPLRTKLSSGQTVEIITARSALPKPQWLEFVVSSKART
AIRHQLKQLQHEDAVQLGHRMLDRALEAMDSSLERLPKGRLDAFLAEHHF
QRLEALLADIALGNWMPNQTAQALLTYTELLGNTPIEHSREKILINGSER
GVISFANCCQPIPGDDVMGYHTTGKGIVVHRLDCPNLNELRKSPERWVPI
DWDLNVSGDYDASLLVEAENRTGVLAQLAAAIAQSHSNIEHVDYLERDFN
AALLRFSIQVRDRRHLAEVMRRLRRLPAVQSVYRQ
>PD0265 tctD, two-component system, regulatory protein
MRLLLIEDNADLADAIIRRMRRHGHAVDWQSDGLAAAGVLRYQRFDLVVL
DIGLPSLDGLQLLSELRQRGDTTPVLILTARDAIEDRVYTLNVGADDYLS
KPFDFREFEARCRVLLRRNRGNASEVVRIGGFEFDNAAHRICLNGEPIKL
PNREYRLLEILIARLGQIVGKDEIGNSLFNFDDNAGPNAIELYVARLRRK
LEAAPLRIVTVRRAGYLLEPIVEARGHEACD
>PD1223 tex, transcription-related protein
MQNSLLTQHIAQIIATEISSQPTQARAAIALLDEGASVPFIARYRKEATG
GLDDTQLRTLETRLTYLRELEERRSAILASITEQGKLNDLIHAEILAADT
KSRLEDLYLPYKPKRRTRAQIAREAGLEPLADSLLTDPTLIPETVAANFV
DPEKGITDIKTALEGARAILIERWGEDAALIGELRQWLTNNGVIHARLID
NKEDTGAKYRDYFNHTEVLSKIPSHRLLALFRARSEEILHLDLDPGNDAD
AGHQYCESMVMQAACVADQGRPADTWLMTACRLTWRAKLHMHLMLDLFNQ
AREKAEAEAITVFSNNLKDLLLAAPAGPRIVLGIDPGIRTGCKIAIVDTT
GKLIATETIYPHEPRREWDKSLHTLKTLCTQHHVTLIAIGNGTASRETDK
LVSDLIKAHPALKLQKIVVSESGASVYSASESAAKEFPNLDVSLRGAVSI
ARRLQDPLAELVKIDPKAIGVGQYQHDVDQFHLAKALDARVEDCVNAVGV
YVNTASAALLSRVSGLSASVAENITRYRDEHGSFKQRQDLLKVPRLGAKT
FEQCAGFLRIADGNQPLDASAVHPEAYPVVERIVQTTGKPIKALIGDSHT
LRMLKPEQFTDTNFGIPTIRDIIKELEKPGRDPRPEFKAVRFTEGVENIK
DLKPGMILEGVVSNVAAFGAFVDIGVHQDGLIHISALADRFVKDPRDIVK
AGDIVKVKVLEIDVPRKRIALTCRLHEETPPETPAANRTGNERGRPNPVA
KKLKATPTENALAQAFARARLK
>PD0820 vacB, truncated ribonuclease R
MPFQDQHAAREAERYAEPIASREAILDLLDACDGPQTAEEIADRFGVTDR
IEILGRRLGAMVRDGQLVQNRRGGFAPVQHTNLIAGTVIANPDGFGFLKP
DEGGDDLFLPPFEMRKVMHGDRVLVNLTGIDRRGRREGMIARVLERRMSR
LVGRFFYELGIAYVEPDDKRLQRNVQIPPEHIGGASEGQLVVCELVVPPD
TRRPAIGRILAVLGEALTPSLVVETAIHGHQLPHVFPQDVLDAAAAVPLT
VTPGMLGGRVDLRALPLVTIDGEDAKDFDDAVYCESNRGGVRLVVAIADV
SHYVRPGTPLDEEALTRATSVYFPGFVVPMLPETLSNGICSLKPNVDRMC
FVCEMQIDRKGEVKSSSFYEAVMNSHARLTYTQVWKAVGEEDAQAQAQIG
TLLPQVQQLHRLYQVLAKARAQRGAIEFESSEVRFVLDNRGEVTQAGMLM
RNDAHKLIEECMIVANVQAAHFLLNAGVQAPYRIHERPPESKYADLLEFL
KEFKLSLPAWGKVQPGDFTKLLKKVRERPEAALLESVLLRSQSLAVYSAD
NRGHFGLALDGYAHFTSPIRRYPDLLVHRAIKHALSGAAPDCFLYTPRDM
VALALVCSSRERRADEAEREVDERYRAAWMERHVGSEFDGVISGVTSFGL
FVELEQSKVTGLVHVTQLPQDYYSFDPIRKVLVGQRRGRVFRLGDRLRVL
VLKASMEERKIDFRLVDQSMHEQVTREVSPPVLRGKATTKRKKGVKTR
>PD1798 yoaA, ATP-dependent helicase
MLSRASIEALSDGGLLARQLDNFVPRPGQQRLTAAIGEVFEQRNILLAEA
GTGTGKTFAYLVPTLLSGLKTIISTGTRALQEQLYHRDLPRVRAALGVDL
RSALLKGRTNYVCKYRLEQTCAAPHLGTAEQTTQLQRILTWSGRTQFGDM
AELDTLPDDSPLLPLVTSTLDNCLGKDCPFWNECFVVQARQRAQAADVVV
VNHHLLLADLALKQEGFGEILPGAQAFIIDEAHQLPALAANFFGESFGMR
PLQELGRDCMIEARSVAGAQAALQHSVWQLEQALRTLRAAMEGLPSRGTQ
SRLLAKPEVCEGFETLITALTSLHSLLVPLRSAAAGLDACAARAQEALSR
LLRWLGETAETSGLEGDTPSNNDVLWYELTQRGFRCQRTPLDVSAQLQAH
RETSMAAWVFTSATLAVDGRFEHIARRLGLNHPMTLLQPSTFDWARQALC
YLPPGLPNPAAHGFGATLIEALIPVLEASSGRAFLLFASHRALREAATAL
RGGPWPLFVQGDAPRATLLDRFRVSGNGLLLGSASFREGVDVAGEALSVV
VIDKLPFTAPDDPVFEARLEAIRQEGGNPFFDEQLPQAVIALKQGVGRLI
RSESDRGVLVLCDPRLLSKSYGRIFLDSLPSFPQTRDIAEVRAFFNGSNT
APTESRHDSPISHRQASGVDRIG
>PD0595 yybA, transcriptional regulator MarR family
MYIMDPSTSPGISLLLRQVCDGLVRQLDEEMRQEFPDLGFTHYLGLKVIA
IHAPCTANKLAQALDQTPSAVTRLLDKLEAMGVVRREPHAQDRRALHIVM
TETGKDLWRRLKQHGECATTYALRELSEDDQGQLIHLLTRIRNSLDLS