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2024-05-19 18:26:00

Gene list

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COG category: Transcription
Organism: Xylella fastidiosa Temecula1, Temecula1

Number of genes found: 94

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Xylella fastidiosa Temecula1, Temecula1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA PD1116 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1312844 567 - 0.560847
NA PD1087 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1288023 333 - 0.537538
NA PD1149 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1347095 1005 - 0.499502
NA PD1470 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1713534 744 + 0.514785
NA PD0682 transcriptional regulator LacI familySubName: Full=Transcriptional regulator LacI family; chromosome CDS836237 1077 + 0.545033
NA PD0389 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS472994 429 - 0.456876
NA PD0989 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1194458 243 - 0.584362
NA PD0643 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS790372 228 + 0.517544
NA PD0954 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1157184 333 - 0.51952
NA PD1528 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1773249 705 + 0.540426
NA PD1159 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1360302 930 + 0.56129
NA PD1001 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1203700 789 - 0.555133
NA PD1315 chromosome partitioning proteinRecName: Full=Probable chromosome-partitioning protein ParB; chromosome CDS1542769 933 - 0.543408
NA PD0694 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS850435 462 - 0.588745
NA PD1321 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1550281 168 - 0.511905
NA PD0371 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS458554 402 + 0.529851
NA PD1137 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1328703 1419 + 0.561663
NA PD0906 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1117952 435 - 0.411494
NA PD1939 N-acetyltransferaseSubName: Full=N-acetyltransferase; chromosome CDS2279145 471 - 0.573248
NA PD1005 phage-related repressor proteinSubName: Full=Phage-related repressor protein; chromosome CDS1206621 690 + 0.442029
NA PD1993 temperature acclimation protein BSubName: Full=Temperature acclimation protein B; chromosome CDS2344635 222 - 0.454955
NA PD1771 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2063510 426 - 0.50939
NA PD0871 Trp operon transcriptional repressorRecName: Full=Trp operon repressor homolog; chromosome CDS1083467 279 + 0.34767
NA PD1177 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1379817 306 + 0.464052
NA PD1133 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1324106 1608 + 0.555348
NA PD1213 KDO kinaseRecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; chromosome CDS1414311 780 - 0.532051
NA PD0835 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1033883 2523 + 0.571145
NA PD0307 toxinSubName: Full=Toxin; chromosome CDS386446 483 - 0.565217
NA PD0225 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS288771 660 + 0.557576
NA PD0993 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1197942 360 - 0.516667
NA PD1909 transcription regulator proteinSubName: Full=Transcription regulator protein; chromosome CDS2239693 363 - 0.53168
NA PD1016 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1215224 885 + 0.542373
NA PD0707 transcriptional regulator MarR/EmrR familySubName: Full=Transcriptional regulator MarR/EmrR family; chromosome CDS866104 480 - 0.466667
NA PD1380 cold shock proteinSubName: Full=Cold shock protein; chromosome CDS1603976 204 - 0.465686
NA PD0032 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS39197 543 + 0.535912
NA PD0199 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS251341 429 - 0.517483
NA PD1748 conserved hypothetical proteinRecName: Full=Transcriptional repressor NrdR; chromosome CDS2035131 534 - 0.533708
NA PD2093 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2481568 513 + 0.362573
NA PD2046 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2409891 966 - 0.534162
NA PD0813 transcriptional regulator PbsX familySubName: Full=Transcriptional regulator PbsX family; chromosome CDS1000347 381 - 0.540682
NA PD1730 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2017510 1419 + 0.566596
NA PD1002 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1204485 633 - 0.540284
NA PD1194 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1389925 1419 + 0.568006
NA PD1726 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS2013171 1512 + 0.552249
NA PD1124 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS1317122 759 + 0.516469
NA PD2104 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2491945 309 - 0.527508
NA PD0382 phage-related proteinSubName: Full=Phage-related protein; chromosome CDS464933 1419 + 0.568006
act PD0421 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS520298 906 - 0.558499
actR PD1958 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS2300547 579 + 0.571675
agmR PD0268 transcriptional regulator LuxR/UhpA familySubName: Full=Transcriptional regulator LuxR/UhpA family; chromosome CDS340538 633 + 0.516588
algH PD1276 transcriptional regulatorRecName: Full=UPF0301 protein PD_1276; chromosome CDS1487577 567 - 0.552028
algR PD1153 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS1350700 759 - 0.498024
algU PD1284 RNA polymerase sigma-H factorSubName: Full=RNA polymerase sigma-H factor; chromosome CDS1502037 621 + 0.507246
attO PD0520 transcriptional regulator AraC familySubName: Full=Transcriptional regulator AraC family; chromosome CDS636886 846 + 0.553191
baf PD1072 transcriptional regulatorRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS1274398 729 + 0.510288
colR PD1919 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS2251333 678 + 0.536873
colR PD1367 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS1589173 714 - 0.529412
cysB PD1839 transcriptional regulator LysR familySubName: Full=Transcriptional regulator LysR family; chromosome CDS2154703 984 - 0.557927
deaD PD0205 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; chromosome CDS261295 1848 - 0.570887
fis PD0811 DNA-binding proteinRecName: Full=Putative Fis-like DNA-binding protein; chromosome CDS999260 273 - 0.512821
gacA PD1984 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS2334631 663 - 0.463047
greA PD0400 transcriptional elongation factorRecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS489158 477 + 0.522013
hlyU PD1891 transcriptional regulator ArsR familyRecName: Full=Biofilm growth-associated repressor; chromosome CDS2219431 345 + 0.536232
hrcA PD1372 heat-inducible transcriptional repressorRecName: Full=Heat-inducible transcription repressor HrcA; chromosome CDS1595494 1050 - 0.542857
korB PD0041 transcriptional repressorSubName: Full=Transcriptional repressor; chromosome CDS54701 1074 - 0.439479
lexA PD0092 LexA repressorRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS117015 636 + 0.525157
mfd PD0033 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS39807 3588 + 0.544314
nusA PD0193 N utilization substance protein ASubName: Full=N utilization substance protein A; chromosome CDS242734 1512 + 0.509921
nusB PD1743 transcription termination factorRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS2030328 474 - 0.525316
nusG PD2006 transcription antitermination factorRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS2367393 558 - 0.460573
oxyR PD0747 oxidative stress transcriptional regulatorSubName: Full=Oxidative stress transcriptional regulator; chromosome CDS921694 936 + 0.522436
phoB PD1970 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS2317096 696 - 0.530172
popP PD1679 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS1948635 684 - 0.489766
prsX PD0175 transcriptional regulator MarR familySubName: Full=Transcriptional regulator MarR family; chromosome CDS222185 507 + 0.433925
recG PD1705 ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1987389 2157 - 0.562819
relA PD0563 ATP:GTP 3'-pyrophosphotranferaseSubName: Full=ATP:GTP 3-pyrophosphotranferase; chromosome CDS692427 2157 + 0.538711
rhlB PD2053 ATP-dependent RNA helicaseRecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS2419308 1632 - 0.515319
rhlE PD0157 ATP-dependent RNA helicaseSubName: Full=ATP-dependent RNA helicase; chromosome CDS200530 1341 + 0.515287
rho PD2055 transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS2422113 1281 + 0.494145
rnc PD1290 ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1508311 684 + 0.55117
rpfG PD0405 response regulatorSubName: Full=Response regulator; chromosome CDS496004 1155 + 0.522944
rpoA PD0461 RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS549106 999 + 0.439439
rpoB PD2001 RNA polymerase beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2360203 4167 - 0.465803
rpoC PD2000 RNA polymerase beta' subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2355881 4224 - 0.464489
rpoD PD0593 RNA polymerase sigma-70 factorRecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; chromosome CDS724988 1872 + 0.47062
rpoH PD2048 RNA polymerase sigma-32 factorRecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; chromosome CDS2414998 882 - 0.471655
rpoN PD0637 RNA polymerase sigma-54 factorRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS785517 1389 - 0.532757
rpoZ PD0719 RNA polymerase omega subunitRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS883270 300 - 0.506667
spoT PD1707 pentaphosphate guanosine-3'-pyrophosphohydrolaseSubName: Full=Pentaphosphate guanosine-3-pyrophosphohydrolase; chromosome CDS1990140 2208 - 0.513587
tctD PD0265 two-component system, regulatory proteinSubName: Full=Two-component system, regulatory protein; chromosome CDS336890 696 + 0.531609
tex PD1223 transcription-related proteinSubName: Full=Transcription-related protein; chromosome CDS1422685 2319 + 0.531263
vacB PD0820 truncated ribonuclease RRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS1009582 2247 + 0.564308
yoaA PD1798 ATP-dependent helicaseSubName: Full=ATP-dependent helicase; chromosome CDS2099787 2022 + 0.586548
yybA PD0595 transcriptional regulator MarR familySubName: Full=Transcriptional regulator MarR family; chromosome CDS730012 447 + 0.496644