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# Chlamydophila abortus S26/3, S26/3

>CAB934 putative exported protein
MKQTFTKRILLFLFLVIPIPLILNLVVLSLFSFSAAKSNLMENLHTHATN
FSLEFEKKLTIHKVFLKRLANTLALKAYSSSSEDCYSQAYNEMFALSNMN
FSLCLIPLVQGNIKTKTPHDPFIHYLKEHPEIKKKLSMSVGKACLITVPS
SSNTHFTHYLVITEDIEVWNSPTSAGLLVSFYPMDFLQRDLFKSLHLKDE
DICLLNKYGEVLFASSPQFSSEVFSLDIADLPKITARKQATPLEAAPKIL
HEQKLISVKIKNKRYLGLVLNKLPIQGTYTLSIIPLSWLVIKAIRLPLNV
IFFYSLAFIFMGWILSKINKRLNQPIQELTTCMEAAWRGNHNIRYEPQPY
GYEINELGNIFNCTLLLLLNSKEKAEIERLSGDKLQKELAILSSLQKALL
RPDFPEFPNVSFISKHLQGMQRSGHFYGWKTSIPEQSFVGVIGLAGDIGL
PSYLYALSARSLFLAYANLSSSLENICSHTFEAFGQTTEGDEATISMTFI
RYCSTDRKLSILSAGETPPVAFLKRQETFSRLISPSVQNIQPGDVLVCIT
GNKELTEYLLRLPIEELIRDPLAPLNSDNFIETLTDMLNKETQSQIDGTL
SFLSFF
>CAB843 putative transcription-repair coupling factor
MPMDFDPVNLNLSILSEITNTSVPLLIENILPGARSFLAAKLFHERKESV
VMITTRSRIDDLFEDLASFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKI
LYDLYQKKAPIFCVTTLKALLEKTRSPKDTAHQHLDIQVGDVLDPDIMID
LCKNLGYRHETLASDKGEFAYRGGIIDIFPLSSQEPFRIEFWGEKIISIR
PFNPSDQLSTGKVSQLSISPATKDSGTEVLSHCLLDYFATPPTFLFDNLT
MLEDDFSDISGTLSSLPNRFLPIQDLCQRAFQSQTIFFEEKNFPNVRTIK
HNTVNIEVFHCDVQASRLVAPFIYPNEILDEQTNPLLGFLQKLQEYLPSQ
GQPFNVALYNTKAKALKEARALIETLGQNSIHIYEKSGNLSSSFALVNER
FAAISLAEFASTKVLRRQKQRNYFSVTTEEVFVPIPGETVVHLHNGIGKF
IGMEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGISDKTPDL
HNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTTPAFIYPPHGEEVIK
FEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKA
LKKIFEDTAQGNVDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDF
LKERYPTIDCLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFVL
EHNEETVSAALRHELLRGGQAYVIHNLIESIFRLGNTIRTLVPEARIAVA
HGQMSSDELASIFQKFKDKETNILVATALIENGIDIPNANTILVDHADKF
GMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSP
LLFNDDVKIEFPYKSRIPDTYIDLASLRIEFYQKIGGAEDAEQLDFIKEE
MRDRFGPLPEEVLWLFALAHLRLFALQHNISSIKGTGNALYIQQRHGKTE
QIKKTLPYSLSPTPELLVSEVLESIEKAFPLKTPR
>CAB057 putative chromosome partitioning protein
MSGVINKDTIIEVAIDNIRVSPFQPRRVFSESELQELVASLKSVGLIHPP
VVREIRSGDRVLYYELIAGERRWRALQLAGYTTIPVVLKQVVADDIAAEA
TLIENIQRVNLSPMEMAEAFKKLINVFGLTQDKVAVRVGKKRSTVANYLR
LFSLSESIQKSLYLGEITLGHAKVILTLEDPNLREILAEKIISQRLAVRE
AEQEAKKLLSGEVLTTRAAKEQVKACATSPHCHEMQKRLSQSLGYKVTVK
PQGSHYSVSLHVQDEEQLKQLEEWLLKKS
>CAB933 possible regulatory protein
MIPFTKTIGYRLWLACVAAILIPLGMNIVLLNLRQYHTTVSSVALAFKEN
ATFKVDTLMQIVPLNADVLALFSEVLDLDEGIPSTPNVELSNEMQRTFSV
LYDEISLIKLFPNGEKIVVASSIPQHLGENYQNKIDISAQTDFSATFKQS
SNNHEVFSVMQANIFDNETHELLGILYTTHNIEKFLEDILVNTQAYFNVK
TALLSKEGIILKASDPDLNLRAIYPNLTEKQFCDTFMDKSTCPKNISLKP
IHLSPLSIEPNFFAFKNGKNVTWSYLAHVPNMDLSVLSYGIKAELFATFW
KRTLIYFAYFLCVVLGSMIAYLVAKRLSQSIRKLATVIIQTRDNIHTPYK
DDSLGFEINRLGHIFNAMVESLNQQQSLAEKNYEIKESAQNALHLGEQAQ
QRLLPNTLPNYPHTELAKAYIPAITVGGDFFDVFIVGEGDDAKLFLIVAD
ASGKGVHACGYSLFLKNMLRSFLSQMPSIKEAIKQTSSLFYQNTADSGMF
VTLCVYSYNYKTGIVEFYSCGHNPACYLSPDGAVSFLSHRGMALGFLPNI
PDIPTGSLKPDPGSLIILYSDGITEAHNQALEMFGEERLKNVVKTLVGKS
AEDAMHSLILSVKTFVGNCHQHDDITLLILKISDL
>CAB590 putative serine/threonine protein kinase
MESEQNIGIEFLGDYKILCYLRKDLWCQDILAEHRFIKKRYILKLLHSEF
SSSEAFMNAFHETIIKLATIKHPGILSIENVSQADNQYFLVTEEKEVPTL
SLSQYLSSFPQGLSELEIQEIVVQLAEVLDYAHSRGLVHGGLSLDSVHVD
LSGESPTVFLPELGFSFLLKDHYTQHLLTKFPERSSLDKLKELLVFQAPE
PMSGTISEDVYAFGVIVYFLLFRKFPQGVFPLPSEAFPDYIYSWDQLIKS
CLSYSIDKRPRKLTLLIVKKTLGEQLLTAKMQCKEEQLREISNEPQVPSV
ANIFREGEKRIHQEPSDHLAFVLVEAKSIDEAMDTSVDSTEEVVREDESY
ANALQSLLIREPVVSRYVEEEKEEVKPQPLFTEMVFIEGGAFIRGSREGQ
RDEHPVHEIFLQSFFLDIHPVTNEQFVRYLECSGSEQDKYYNELIRLKDS
RIQRRSGKLVIEPGYAKHPVVGVTWYGASGYAAWVGKRLPTEAEWEIAAY
GGVAQQRYPCGEEIDKSLANFFSSDTTAVMSYPANAYGLYDMAGNVYEWC
EDWYSYDFYELSAQESHAPQGPAQGVYRVLRGGCWKSLKDDLRCAHRHRN
NPGAVNSTYGFRCAKGVK
>CAB415 putative RNA polymerase sigma factor
MKTQNTQNISEIWELYWQTQEIEYRDTLIDFYLHLVKCVAHRLISGMPSH
VKTEDLYASGVEGLVRAVERFNPEKSRRFEGYALFLIKAAIIDDLRKQDW
VPRSVHQKANKLADAMDALRLSLGREPTDGDLCEYFQISQQELSGWFASA
RPALIISLNEERPSLSDGESGVALEERIADERAETGYDIVDKKEFSSFLA
SAIESLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALIKLR
AALSAFL
>CAB977 putative transcriptional regulator
MLTDKIILFVTEDSSISVQLKEFAQNVEYNIVISSTLTDTPEADLIFCEY
LLLPESIFSSKISSETDLVVLFDAFEEEAIVKILNNGASGYLLRPITVKV
IDAVIRAFLRNHHHFEHAIPESISFGDRTFHLLHLSIDSPQGTIHLTPSE
AGILKKLLMNRGQLCLRKHLLEEIKGNTKEIIARNVDVHIASLRKKLGPY
GSKISTIRGVGYLFSENDHLPPESKEESSSPYASNSF
>CAB604 conserved hypothetical protein
MAKIPYAILEKGSLLLASPDTDQGVFARSVILLCEHSLNGSFGLILNKTL
GLEISDDIFPVDKVSNNNIRFCMGGPLQANQMMLLHSCSEIPEQTLEICP
SVYLGGDLSFLQEIASSEAGPMINLCFGYSGWQAGQLEREFLDGNWFLAP
ASYEYVFTDSPENLWSMILKDLGGKYASLSTVPENLLLN
>CAB236 putative ribonuclease
MVKRIRKKRPQSFRRNSKQIFISGVLFVHAKKGFGFVTPDHPEEYPFDIF
IPARDLKGALDGDHVVVSLFPNSKEGEKRKGGIHQVISRGKTVLVGTITS
LTDTSTAFVCVNALGPEIPVKAKLIPKRTYKIGDRLLLSTPVWNAKPESK
EPPPLEMLEFIGNISNAKSDFPCIKAEYGINEEFPEAVIEETHHFSQKHI
SQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADVS
HYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAV
SVFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVENKQPHPIAKTLL
AMAELSEKFSDIREQRGCIRLVLPLFTMSLDNLQEPVTLIETRQTLSHKL
IEEFMLKANEVVAYHISHQGVSLPFRIHESPNDESLLSFQEIAKAMGFDI
IMTPAQEPDFQYLLQESSAGHPLEPILHSQFVRSMKTASYSTENKGHYGL
KLDFYTHFTSPIRRYIDLIVHRLLFHPMSIEETRLEHIVRACSTQERIAA
KAEFAFENLKKNRFLHKFLKEQPDTIYQGYIITITPEGLSFTVPEFCQEG
FIPSAQLPKEFSLKKKTSPNDLPPKMRPGAPIQVKLSEVNLLNQVITWSL
VTKTPNTVKKQPTSTKKTQNKKPRTRRKRNTE
>CAB928 conserved hypothetical protein
MGNLKTLLESRFKKNTQDKMETLTRKRMEGEHSPFLSRFSDVKLSPQEEE
KFRQLLQHYTFEDQISEEDFKSLCNLSAQIKQIHHQAVLLHGERIKKVRD
LLKTYREGAFSSWLLLTYGNRQTPYNFLVYYELFSTLPESLKIEAEKMPR
QAIYTLASRQGSQEKKEAIIRNYRGESKGELLDIIRREFPLISTDRRQIC
LAKQALSLLSKGSELLRKCSELSTEDQAALEKLIKKLQKVKSNFIPNTKV
>CAB040 putative serine/threonine-protein kinase
MDCQSEILLLHQVIGAYHIKKILSKKEGSAVYQGLHSATLQSTAIKVLEP
PLVADTRRVHNFLKEARIIEQVSHPNIVKLYQYGQCRERLYIAMEYIQGV
SLRHYILTHQIPLSRAIDIILHIGRAIEYLHSRGILHRDIKPENILMNAQ
GEIKLIDFGLAVSSSTEHASHPSCLGTPAYMSPEQRQGDKVSEKSEIYSL
GLIAYELILGNLALGKVILSLIPDRVSKILAKALQPSPQDRYGSMKEFMS
HLHQYRYSQDLQQDYRNKDHTAQVNEQLYQQRFWLSPAEIVVPDFISASV
YEQGYPTHPHVYYEAYMSRDTFRLWFCYSLSGNATLVLTIIKTFVSQWGH
EDSIRSTMRKIHSELLRIHAPVDTAGMSLVCVTIPKEKKELSWITCGKTS
FWLKKQGKVPQNFTTSSLGLGKISSLQIQETKVAWEIGDGAVLHTLQADD
SMSSLNSPLFTELKDRGQTAIFCPIESVQFGILENHDGNLCPSTLISLKR
IW
>CAB164 putative transferase
MTENKDTGVPGLDIRYTLPSDAVYMRQWLNDPKILRGFPLKTEAEIHDSV
NFWVGFYRYHSSLTAVYEGEVAGVATLILNPYIKVSHHALVSIIVGEPYR
NQGVGTALLNNLCHLAKTRFHLEILYLEVYEENPAISLYKRFGFIEVGRQ
KQFYKDEIGYLAKIIMEKQL
>CAB886 putative helicase
MLNFRKLRRDFTANILQDGKELFDQGAVINAKILSMNGESVCIGAQVRGL
YDNVYECEIEVDRSKSDTIDSNCDCSYNYDCQHIVALLFYLERYFNEMVV
AYSQEANLETNQEINEDVKKELQETFVAAANREEERKDRAHQKEILSEYI
HAANVLSANPFFLPQEYLEKNSAELAVLFVASNDEVFRPNQHVEFQLVLR
FPGRSKPFYISNIKTFLEGVLYQEPIILNGRHFFFTMQSFNASDRKLIDL
LIRYVRYANQPPEEKLLKSAYLTLTSLGVILAKMYEHQMADRGGCQSGEK
ESFSGIFCGNLEEPLYWSVTPAKMKFDLDFFDTPYKALLMTPLILVDDDT
LQPEQAILLESNVPGIIHNNVYHHFAPQIRRAHLRSFSKLRDVTIPEALF
GSFRENALLVFKEYAEVSNVEVLNSFVTLPYVEDVRGECNISYLDGELEA
KLYFIYDDLRVPAVPFSLQFDEIRAFIREDGILARNLVEERKIIDEVFSG
FIYDERDGAFHVKSEKKIVEFMTETIPNNQHRITFNCPETLSDQFIYDET
VFDLAFREGSEVNTYEAELKVNGYLKGISLDLLWDCISAKKRFLELPKKG
RHVKTRRGRASGSTKLPCILVLDLEKISPVIQIFNEIGFKVLDDFVEKCP
LWSLTGISPGLFKGLPVNFKMTKKLAEIQKQIRGEVDFKFQEVPEQIQAT
LRSYQTEGIHWLERLRKMHLNGILADDMGLGKTLQAIIAITQSKLEKGKG
CSLIVCPTSLVYNWKEEFRKFNPEFKAVIIDGVPSHRRRQLATLSDYDVA
ITSYNLLQKDIDVYKDFVFDYVVLDEAHHIKNRTTRNAKSVKMIRSGHRL
ILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKTDNM
VALKKKVAPFILRRMKEDVLEDLPPVSEILYHCHLTDSQKELYHSYAASA
KKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFAKDVPEPGDSAKY
DLLMDLLSSLVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTKN
RLEIVNQFNEDPGLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVENQ
ATDRVHRIGQNRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKVINSDDEV
VSKLTWEEVLELLQI
>CAB900 putative DNA helicase-related protein
MVLNALAGFRQTAMDYLATNRHDIALDFSGDCYTIRIPDEDSPDGDWVST
LKFSNIDNLTFASCSCPDGDCCVHLMTAFFSAYDAHGWLPLHHKFHLSFW
YALFFKFFIEEARLHADGDRHYSIASSHVTLEISALSPEAFTKWLPIVHQ
STEPKIPSEKTFPQSALYRIAKCFFFFAEAGAQLDLIENNQGFPTQFSLQ
WEGLSLKGEILDFTTLEYLFPKINFAQTSLPGNYRDFSVTKVRVAPEESK
IYFTIHPAQQDNTTQTITPLGSVGYVAGSQLVILPSQETSVSIYVLSLLP
ATLKKQILSLLHYDAEERPIRYSIHFLRDSSLSFSAYLDTPGDLENGELI
YPDFCYVPERGLFTIEGLLSPQISFIIKADQVEEFLNHEGSLIREPGFEV
FTNQVPEGQLTYNITQQGVLLFHYNTGDPAAIDIHYGPWTYYSGQGFFLQ
RKADLEIQDGLIVEADQIPSFIMKHEVVLRTIPNFFAPTPPLKNLFFEVH
KETKGSGLYLKPVFQGLEEENCRLFGVFLYRENLGFNLLPTPLQSLCSLP
KKIPPEQVPDFIHQNFQNDKLVFVDPQLCLPETFELVIRSITRPHPSSPL
HLQLELKTNIGSIPLGTALQALKNKRAFAFTKAGFLNFQHCLFQFLKQFI
SSQKCLIPENTLIATVTDIFKLDALAPLSTHEKIQASESDLAFFSQLKAA
CLPPIPQSLFSTDHKLRPYQNSGLLWLWFLYNHRLSGLLCDEMGLGKTHQ
ATALLDIVFQSAEPTERPKFLVVCPTSVLPHWEHTLATHLPTVSIFSFHG
PNKPEHLPPADVIITSYGTLRQNYAKFYKLSFTVTVFDEIHMAKNKSSQI
HKILCRLDSQMKLGLTGTPIENNLLEFKGLLDIILPNYLPSDALFKKLFT
KKHTAEVDDEIIPSQDLLLKLTRPFILRRTKKLVLPELPEKVESIIPCTL
SPEQKKLYLSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPA
IFFKNPDKYREHESGKWEAFVRLLHDSLSSGYKVVVFSQYIHMIRIIMLY
LEEIGVKYASIQGKSLNRKEEIEYFTTDPECRVFVGSLLAAGTGINLTAG
NVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLMTEDTLEERIHYLI
EKKIRLLDKVISTQDSNILHMLNREDLITILSYKDERGGVDETLSNTSEE
DEVSLF
>CAB207 conserved hypothetical protein
MQCPFCNHGELKVIDSRNAPEANAIKRRRECLNCGQRFTTFETVELTLQV
LKRDGRYENFQESKLINGLNAASSHTRIGQDQVHAIASNVKSELLGKQNR
EISTKEIGELVMKYLKKADMIAYIRFACVYRRFKDVGELMEVLLSATPDM
EK
>CAB740 putative transcription termination-related protein
MSTLTPESSLGSYVKLPRPLPKQKMREIVLQMLYALDMDPMSEESLVPLL
MSETAVTQKHASSALNFSKEILAKSSELDLLIAQTVKNTSFEKLTLMEKN
VLRLTLYEHFHGQPINTAILIAEATRLVKKFSYVEACSFVHAVLNDIFRL
AAPMTHPDTSLMCC
>CAB647 putative serine/threonine-protein kinase
MQHYDIIRMIGKGGMGEVYLAYDPICSRKVALKRIREDLSDNELLKKRFL
REAKIAADLVHPGVVPVFTICSDSDLVYYTMPYIEGYTLKSLLKSVWQCD
SLPKDLAEQTSVGTFLSIFHKICSTIEYVHSRGILHRDLKPDNILLGLFS
EVVILDWGAALSKEMKEDVLLDLDIPMPGSMFSNMTVPGKIVGTPDYMAP
ERLRGAPASESTDIYALGVILYQMLTLSFPYRNKKGKKIHVPNHIISPEE
VAPHREIPSFLSQVVMRALATDPKERYTSVQALKADIEQHLQGSPQWTPK
IALHTQDAECWKFHESILLSKYFPMLEVSPALWYSLAISKIESFSEVRLE
YTLLRKGLEGGFGILLPPSENVDHGDFYRGYGFWLHIKKNVLSVSLVRNG
LEIQKTSGNIDVNQEKFFIAFEKQNHRLSLNIDHTVWMIHMDYLPGRGGR
IGVIIQDITDVCGNIVVLESSGALHVSCLAVPDAFLNEKLYDRAITFYRR
IVESFPGRKEGYEAQFRIGIAVLEKAAEEGDQEGFSQALREFSVLHDSVA
APLEYLGKALVYQRLEEYNEEVKSLLLALKRYGQRPEISRVRDHVVDRLH
EALYSNHRVSLVFMLLALHVAPESINSSEEEHFLKNLQGKIHDTLFCSLD
ISPIDFRSSKMELLLSYWSGFTPFLPGLFQRSWDLKDYRALADIFYTAAD
LGEREFIDVYGNTLRENIQATTFTEDIVEIFPHQLIHFLSALDAIFLHAP
VEKIFSDVDILDPVLIIYLFDLFAKDVLIHGKGEQILDAIQVLETYVSPQ
QRHTYLLPYEILAYLWMKEGKKVHELLSAHYDESFWIEDSHWAFVLYGYW
LALTEESSLAYLHLSGCREDHVAPRALIGLFCSPLGICENQWSYQERRNL
LLQKFIFFHCLGDDVERDNCRVAYDLLVKERLL
>CAB239 hrcA, heat-inducible transcription repressor
MSKSWISKRESKLLYILLTTTELYLKTGQPVGSKTLKEYECSNLSTATIR
NYFAELEAEGFLKKNHVSGGRIPTDLAFRYYVDHRADFLQDDLPETTIHL
LNQLPKESQNIVKDLQKASELLGEALQLPTCFSSPRFENDSVTNIQLSLV
DEQRVVVILSTEFGQIFTDTLWLAETSNYASLKRIETFLQNYLRKQPPSE
TLSQKEEDLGMTLYNEVVVRYLTRYCNFSEEDLYQTGLSKLLKYDAFKDP
DMLALGLSFFESRCHMCKLLDIGMHRDRPTAFIGSELSDIFGTPNPHCAV
ITTPYYMNRTPLGAFGVLGPINLPYREIYKTLTIFADKVKESLTQSFYKF
KLSFRRPCPSDPKLSKEPTLLARYSSIKLLPPKETS
>CAB452 nusA, N utilization substance protein A
MNKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNIN
PKTGDIEVFCEKEIVEVCENPSKEIPLDKAREYDPECEIGQYMDVPFVSE
HFGRIAAHAARQIIGQKLRHAERDVIYEEYRHRVNEILSGVVKRFAKGSN
LIIDLGKVEGLLPARCYPKTEKHKVGDKIYALLYEVQESENGGAEVILSR
SHPEFVKQLFLQEVPELEEGSVEIVKIAREAGYRTKIAVSSSDPKTDPVG
AFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAVL
EDDKVIAIVVQDADYATVIGQRGINARLISQILDYELEVQRMSEYNKLLE
IQRLQLAEFDSPLLDEPLEMEGISKLVVQNLVHAGYDTIRKVLLASANDL
ASVPGISLELAYKILEQVSKYGEGKVDEKPKIED
>CAB666 nusG, putative transcription antitermination protein
MFKWYVVQVFTAQEKKVKKALEGFKESSGMTDFIQEIVLPIENVMEVKKG
EHKVVEKFIWPGYLLIKMHLTDESWLYVKNNPGVVEFLGGGVPLALSEDE
VRNILKDIEEKKAGVVQKHKFDVGSRVKINDGVFVNFIGVVSEVFHDKGR
LSVMVSIFGRETRVDDLEFWQVEEVALEQESE
>CAB129 rho, putative transcription termination factor
MKEERSSEVLPKVKENRKHACPGLQEKSFAGECAVVADVVNENQPVTITK
IAKLQRMGIEELNVLARQYGVKNIGSLTKSQVVFEIVKAKSERSDELLIG
EGVLEVLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDTIIGTI
RSPKEKEKYFALLKVDKINGSTPDKAKERVLFENLTPLYPNERIVMEMGK
EHLAERVLDLTAPIGKGQRGLIVAPPRSGKTVILQSIAHAIAVNNPDIVL
IVLLIDERPEEVTDMIRQVRGEVVASTFDEQPERHIQVAEMVIEKARRLV
EHGKDVVILLDSITRLARAYNTVQPHSGKILTGGVDASALHKPKRFFGAA
RNIEGGGSLTILATALIDTGSRMDEVIFEEFKGTGNMELVLDRRLSDRRT
YPAIDLIKSGTRKEELLYHPSELEKVYLFRQAIADLTAIDAMHLLLGRLK
KTNSNAEFLLSLKE
>CAB334 rnc, ribonuclease III
MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFL
GDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEY
LLIGKGERIQNERGKTSAYANLFEAILGAVYLDGGLAPARQITVPLLPSK
KDILPLMLGNPKNRLQQLTQKHLRTLPVYQYEPWTSPQGASGYHIRVLVN
HEVWGEGFALSKKEAEKLAAQQALDAHDYEDKNTMDL
>CAB113 rpoA, putative DNA-directed RNA polymerase alpha chain
MSDCSQNLLYDKFELPESVKMMAVEGSGGSVDKQASFIAEPLERGMGHTL
GNALRRALLIGLEAPAIISFSMTGVLHEYMAINGIIEDVTNIILNLKGAL
LKKYPFQDSENGRCTQLLKSKVSIDASDLAACGGQKAVTLADLLQEGGFE
SVNPDYVIFTVTQPMQLDITLRVAFGRGYTTSERIVLEDKGVNEIVLDAA
FSPVVLVNYFVEDTRVGQDTDFDRLILHVETDGRVSPKEALAFSTQILTK
HFSIFEKMDEKKIVFEEAISLEKENKDDILHKLVLGINEIELSVRSTNCL
SNANIETIGELVIMPEPRLLQFRNFGKKSLCEIKNKLKEMKLELGMDLSQ
FGVGLDNVKEKMKWYADKIRSKNGKG
>CAB661 rpoB, putative DNA-directed RNA polymerase beta chain
MFKCPERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNIGLEE
VFREIFPIKSYNEATILEYLSYNLGVPKYSPDECIRRGITYSVTLKVRFR
LTDETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQE
KHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRRRKILAITFI
RALGYSSDADIIEEFFQIEEHSLKSEKDFSFLVGKILADNVLDEASSLVY
GKAGEKLSTAMLKRMLDANISTLKIAVEADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFP
MDEESLAQVTLRKEDVIGALKYLIRLKMGDEKASIDDIDHLANRRVRSVG
ELIQNQCRSGLARMEKIIRERMNLFDFSSDTLIPGKIISAKGLASVLKDF
FGRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHASHY
GRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRDGVVTDEIEY
MTADVEEECVIAQASANLDEYNMFVDPVCWARYRGEAFEADTSTVTHMDV
SPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLE
ARAAKDSGAIVVAEEDGVVEYVDGYKVVIAAKHHPTLKRTYDLKKFLRSN
SGTCINQRPLCSVGDVVVKGDVIADGPATDKGELALGKNILVAFMPWYGY
NFEDAIIISEKLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEE
VLANLGEDGIIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKA
ADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKG
YKNQISVLKIEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETI
ELLEQESLVDLLMPPCDMYDVLKSLLSDYETSLQRLEVNYKTEVEHIREG
DADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYL
ANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVKTPVFEGFPE
SRIWDMMIEQGLPADGKSYLYDGKTGERFDNTVVIGYIYMLKLSHLIADK
IHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVTGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVRPMVV
DA
>CAB660 rpoC, putative DNA-directed RNA polymerase beta' chain
MFGEGSRDNVALSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRT
FKPEKGGLFCEKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVR
RERMAHIELAVLIVHIWFFKTTPSRIGNVLGMTASDLERIIYYEEYVVID
PGKTDLNKKQLLNDAQYREVIEKWGKDSFVAKMGGEAIYDLLKSEDLQSL
LKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHAEWMVLKSVPVVPP
DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRV
DYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSA
KKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAI
RVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPSSGK
PVATPSKDMTLGIYYLMADPTYFPEDHGGKIKIFKDVTEVLRALYSGGFL
DEHTDGRRDETGRGIHIHEKIKVRIDGQVIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLK
DVKIPEIKSEILKEAYDKVAIVKKQYDDGIITDGERHSKTISIWTEVSEL
LSDALYVEISKQTKSKHNPLFLMIDSGARGNKSQLKQLGALRGLMAKPNG
AIIESPITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTRRLVD
VAQDVIITEKDCGTLNHIEITAIRQGSEELLPLKDRIYGRTVSEDIYQPG
DKSKLLAENGDVITSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVT
NCDGILVYIDLRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTK
SIESLETYPVELGVKILVGDGEKVTAGQRIAEVELHNIPIICDKPGFVKY
EDLVEGISTEKVANKNTGLVELIVKQHRGELHPQIAIYSDPGLTELVGTY
AIPSGAIVSVEENQKVDPGMLLARLPRGAIKTKDITGGLPRVAELVEARK
PEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN
DKHVEIIVRQMLQKVRITDPGDTTLLFGEEVNKKEFYEENKRTEEEGGKP
AQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKE
NVIMGHMIPGGTGFDTHKRIKQYLEKEQEELVFDFVSESECAC
>CAB956 rpoN, RNA polymerase sigma-54 factor
MLQHHQKLSLHYLPSLRMQQGLQILQSPITELSSYILQQIIHNPFFDISS
LEEEEWSTCSSFSSLDASYSRPESLFSHLLTQVQQTFDRSEDLLIAQHII
GNLSDQGLFLSSPEELSLQLEVSLETIDKVWKTIQHFHPLGIASPSLQDY
WLLHLEGSPHDLAYKIIKEHYSLLINCDFLRIAKKCHCSPSNLRYALKNA
LTTIPWCPAQGYASSSNIQPALPDVYVAKQDRVWEIQISSQGLPPIKLNR
EVFHIYEQLPREEKKSLTQQILSAKWLIKNLRKREQTLFSIVEKILPHQE
NFLLGKTSCPKPLSVKILSEELPYHESTIFRAIENKTLAGPIGIIPLKHL
FPRAVSPSDAQSKETILQWIHQWVASETIPLSDADISERISQQGIQCARR
TVAKYRTQLKILPAHKRKVHSQM
>CAB971 sigA, major sigma factor
MLMNTQNGQAMEAAHEEEAQKKLEELVSLAKDQGFITYEEINEILPMSFD
TPEQIDQVLIFLTGMDIQVLNQADVERQKERKKEAKELEGLAKRTEGTPD
DPVRMYLKEMGTVPLLTREEEVEISKRIEKAQVQIERIILRFRYSSKEAI
SIAQYLINGKERFDKIISEKEVEDKAHFLKLLPKLISLLKEEDAYLESLL
LALKQNNLSKEETAKLNEDLEKCRIRTQAYLRCFHCRHNVTEDFGEVVFK
AYDSFLQLEQQINDLKVRAERNKFAAAKLDAAKRRLYKREVAAGRTLEEF
KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEG
NMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIE
TINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQHPISLQ
AEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEVLKTLTDRERFV
LIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLR
AFLDLLEEEKVSGKAKNIKGK