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2024-04-29 07:58:47

Gene list

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COG category: Transcription
Organism: Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343

Number of genes found: 231

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Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BF0343 putative DNA-binding proteinchromosome CDS416057 294 - 0.404762
NA BF1263 putative transcriptional regulator, AraC familychromosome CDS1519756 813 + 0.351784
NA BF0581 putative AraC family transcriptional regulatory proteinchromosome CDS696742 1005 + 0.419901
NA BF1437 putative AraC family transcriptional regulatorchromosome CDS1705332 900 - 0.431111
NA BF1982 putative MarR-family regulatory proteinchromosome CDS2315402 993 + 0.363545
NA BF3661 putative response regulatorchromosome CDS4321640 780 + 0.448718
NA BF3901 putative LuxR-family regulatory proteinchromosome CDS4591426 648 - 0.435185
NA BF2790 putative transcriptional regulator (pseudogene)chromosome CDS3249979 519 + 0.593449
NA BF0821 conserved hypothetical transmembrane proteinchromosome CDS1013875 1563 + 0.435061
NA BF4312 putative two-component response regulatorchromosome CDS5117443 774 - 0.445736
NA BF4110 putative transcriptional regulator GerE, LuxR familychromosome CDS4839348 837 + 0.391876
NA BF3520 putative RNA polymerase sigma factorchromosome CDS4146497 549 + 0.43898
NA BF1498 putative DNA-binding proteinchromosome CDS1758251 309 + 0.475728
NA BF3179 hypothetical DNA-binding proteinchromosome CDS3728101 357 - 0.434174
NA BF2137 putative AraC family transcriptional regulatory proteinchromosome CDS2488232 813 + 0.478475
NA BF4357 putative exoribonucleasechromosome CDS5181899 2145 + 0.494639
NA BF0820 putative regulatory proteinchromosome CDS1013494 366 + 0.387978
NA BF4160 putative RNA polymerase sigma-54 factorchromosome CDS4900356 1479 + 0.540906
NA BF2729 putative membrane proteinchromosome CDS3177185 1989 - 0.487179
NA BF1166 putative N utilization substance proteinchromosome CDS1423222 885 + 0.366102
NA BF1412 putative RNA polymerase ECF-type sigma factorchromosome CDS1678036 579 + 0.307427
NA BF2181 conserved hypothetical proteinchromosome CDS2535898 546 + 0.441392
NA BF3331 putative AraC-family regulatory proteinchromosome CDS3929799 879 + 0.362912
NA BF3726 putative RNA polymerase sigma factorchromosome CDS4396657 579 - 0.411054
NA BF3756 putative RNA polymerase sigma factorchromosome CDS4436065 555 - 0.454054
NA BF2027 conserved hypothetical proteinchromosome CDS2371134 741 - 0.34413
NA BF3196 putative two-component system, response regulatorchromosome CDS3751301 738 - 0.449865
NA BF3477 putative DNa-binding proteinchromosome CDS4101212 423 + 0.321513
NA BF1308 putative RNA polymerase ECF-type sigma factorchromosome CDS1568051 600 - 0.395
NA BF3525 putative AsnC family regulatory proteinchromosome CDS4150479 477 - 0.450734
NA BF1709 putative LPS-related regulatory proteinchromosome CDS1993187 531 + 0.414313
NA BF3639 putative RNA polymerase sigma factorchromosome CDS4295939 558 + 0.480287
NA BF4271 putative ECF-type RNA polymerasechromosome CDS5072121 552 + 0.400362
NA BF3767 conserved hypothetical membrane proteinchromosome CDS4449072 1734 + 0.461361
NA BF3194 putative AraC-family regulatory proteinchromosome CDS3748967 879 + 0.401593
NA BF2330 putative DNA binding proteinchromosome CDS2723598 390 - 0.382051
NA BF0688 putative AraC-family transcriptional regulatorchromosome CDS842321 855 + 0.416374
NA BF0177 putative ribonuclease IIIchromosome CDS194128 873 - 0.419244
NA BF1647 conserved hypothetical exported proteinchromosome CDS1922439 450 - 0.442222
NA BF2481 putative DNA-binding proteinchromosome CDS2882704 456 + 0.370614
NA BF1793 conserved hypothetical proteinchromosome CDS2076503 294 + 0.578231
NA BF3714 putative GntR-family regulatory proteinchromosome CDS4379449 723 - 0.431535
NA BF2929 putative AraC-family regulatory proteinchromosome CDS3399763 855 - 0.426901
NA BF2932 putative AraC-family regulatory proteinchromosome CDS3402858 843 + 0.47331
NA BF0198 putative extracytoplasmic function alternative sigma factorchromosome CDS218496 510 + 0.394118
NA BF1791 putative transcriptional regulatorchromosome CDS2075304 372 + 0.341398
NA BF3873 hypothetical proteinchromosome CDS4562119 561 - 0.290553
NA BF1188 putative transcriptional regulatorchromosome CDS1445051 525 + 0.44
NA BF2751 hypothetical proteinchromosome CDS3207636 477 + 0.444444
NA BF2722 putative regulatory proteinchromosome CDS3167099 357 - 0.487395
NA BF2753 putative two component system response regulatorchromosome CDS3210499 678 + 0.471976
NA BF3005 putative membrane proteinchromosome CDS3494393 1107 + 0.312556
NA BF2396 hypothetical proteinchromosome CDS2797312 366 - 0.330601
NA BF1727 putative AraC family transcriptional regulatorchromosome CDS2019195 846 + 0.607565
NA BF2963 putative transcription-repair coupling factorchromosome CDS3443950 3378 - 0.469805
NA BF1426 putative AraC family transcriptional regulatory proteinchromosome CDS1693373 846 - 0.468085
NA BF2241 putative two component system response regulatorchromosome CDS2619192 675 + 0.46963
NA BF3750 putative membrane proteinchromosome CDS4426841 2193 - 0.422709
NA BF1649 putative RNA polymerase ECF-type sigma factorchromosome CDS1923339 522 - 0.48659
NA BF2898 putative regulatory proteinchromosome CDS3360504 807 - 0.525403
NA BF2631 putative acetyltransferasechromosome CDS3061452 498 + 0.435743
NA BF1989 putative AraC-family transcriptional regulatorchromosome CDS2326885 867 + 0.317186
NA BF3734 putative ATP-dependent DNA helicasechromosome CDS4402835 2097 - 0.443491
NA BF1178 putative RNA polymerase ECF-type sigma factorchromosome CDS1434027 516 - 0.408915
NA BF2896 putative regulatory proteinchromosome CDS3359169 822 - 0.493917
NA BF0902 putative transmembrane and transcriptional regulatory proteinchromosome CDS1130439 843 + 0.47331
NA BF4103 putative two-component response regulator autolysis regulator LytRchromosome CDS4831461 765 + 0.405229
NA BF2332 hypothetical proteinchromosome CDS2724400 342 + 0.309942
NA BF3377 conserved hypothetical proteinchromosome CDS3988848 900 - 0.404444
NA BF1090 conserved hypothetical proteinchromosome CDS1345616 651 + 0.428571
NA BF1076 putative DNA-binding proteinchromosome CDS1333290 222 + 0.346847
NA BF1964 putative RNA polymerase ECF-type sigma factorchromosome CDS2295060 552 - 0.414855
NA BF2720 putative LacI-family transcriptional regulatorchromosome CDS3165528 1065 + 0.448826
NA BF1174 putative transcriptional regulatorchromosome CDS1430776 897 + 0.394649
NA BF3766 conserved hypothetical proteinchromosome CDS4448686 366 + 0.404372
NA BF2682 putative response regulatorchromosome CDS3124428 366 + 0.371585
NA BF3347 putative AraC-family regulatory proteinchromosome CDS3948742 846 - 0.463357
NA BF3300 putative AraC-family regulatory proteinchromosome CDS3885963 840 + 0.35
NA BF1073 putative DNA-binding proteinchromosome CDS1331371 327 + 0.449541
NA BF1954 putative RNA polymerase ECF-type sigma factorchromosome CDS2279865 504 + 0.375
NA BF1668 putative ATP-dependent RNA helicasechromosome CDS1940577 1284 - 0.450156
NA BF1159 putative DNA-binding proteinchromosome CDS1417637 360 - 0.327778
NA BF2400 hypothetical proteinchromosome CDS2799661 501 - 0.381238
NA BF2876 hypothetical proteinchromosome CDS3341377 375 - 0.482667
NA BF3293 hypothetical proteinchromosome CDS3878113 348 + 0.37931
NA BF0963 conserved hypothetical proteinchromosome CDS1203402 474 + 0.43038
NA BF3099 putative sigma factorchromosome CDS3617482 561 - 0.417112
NA BF3613 putative acetyltransferasechromosome CDS4264922 456 - 0.383772
NA BF1711 putative ROK family transcriptional repressor proteinchromosome CDS1994178 1209 - 0.368073
NA BF2282 putative two component system response regulatorchromosome CDS2674949 729 + 0.414266
NA BF1266 possible AraC family transcriptional regulatorchromosome CDS1522116 1149 - 0.334204
NA BF0503 putative ECF-type RNA polymerase sigma factorchromosome CDS585860 561 - 0.395722
NA BF0568 putative RNA polymerase ECF-type sigma factorchromosome CDS675796 588 + 0.404762
NA BF0477 putative regulatory proteinchromosome CDS555657 555 - 0.466667
NA BF2622 putative exported proteinchromosome CDS3049690 1434 - 0.412134
NA BF4130 putative RNA polymerase ECF-type sigma factorchromosome CDS4859128 534 + 0.398876
NA BF3744 putative RNA polymerase sigma factorchromosome CDS4417413 567 + 0.377425
NA BF3290 putative AraC-family regulatory proteinchromosome CDS3875799 906 - 0.344371
NA BF2655 putative AraC-family transcriptional regulatorchromosome CDS3089688 888 + 0.48536
NA BF2721 putative aceyltransferasechromosome CDS3166656 447 - 0.420582
NA BF0218 putative N utilization substance protein Achromosome CDS235681 1263 + 0.414093
NA BF0969 putative RNA polymerase ECF-type sigma factorchromosome CDS1211201 603 - 0.462687
NA BF0913 putative RNA polymerase ECF-type sigma factorchromosome CDS1144152 582 + 0.400344
NA BF2686 putative DNA-binding response regulatorchromosome CDS3128110 609 - 0.441708
NA BF1320 putative RNA polymerase ECF-type sigma factorchromosome CDS1583531 549 + 0.462659
NA BF0667 putative AraC-family regulatory proteinchromosome CDS809965 876 + 0.405251
NA BF0315 putative transcriptional regulatorchromosome CDS367248 978 - 0.40184
NA BF2910 putative ECF sigma factorchromosome CDS3380874 597 - 0.373534
NA BF2690 conserved hypothetical proteinchromosome CDS3131452 363 + 0.432507
NA BF2116 conserved hypothetical proteinchromosome CDS2470167 306 - 0.431373
NA BF3233 putative RNA polymerase sigma factorchromosome CDS3800698 474 - 0.360759
NA BF1590 putative two-component response regulatorchromosome CDS1849519 690 - 0.476812
NA BF0975 putative RNA polymerase ECF-type sigma factorchromosome CDS1220474 576 - 0.401042
NA BF1871 putative RNA-binding proteinchromosome CDS2183028 2124 - 0.536723
NA BF4359 putative RNA polymerase ECF-type sigma factorchromosome CDS5184744 486 + 0.454733
NA BF3076 putative membrane proteinchromosome CDS3579023 900 - 0.432222
NA BF4337 putative AraC-family transcriptional regulatorchromosome CDS5159711 876 + 0.430365
NA BF1630 conserved hypothetical proteinchromosome CDS1904081 207 - 0.415459
NA BF2123 putative AraC family transcriptional regulatorchromosome CDS2473956 927 - 0.33657
NA BF0101 putative two-component response regulatorchromosome CDS106878 756 + 0.399471
NA BF4345 putative AraC-family transcriptional regulatorchromosome CDS5169729 846 - 0.407801
NA BF3169 conserved hypothetical proteinchromosome CDS3714349 504 + 0.5
NA BF0141 possible acetyltransferase proteinchromosome CDS147455 531 + 0.444444
NA BF1117 conserved hypothetical proteinchromosome CDS1371299 3273 + 0.454018
NA BF2629 conserved hypothetical proteinchromosome CDS3059863 1080 - 0.469444
NA BF3206 conserved hypothetical proteinchromosome CDS3770204 312 - 0.448718
NA BF2178 putative AraC-family transcriptional regulatorchromosome CDS2533156 849 - 0.371025
NA BF0691 putative transcriptional regulator proteinchromosome CDS847127 366 + 0.453552
NA BF3422 putative DNA-binding proteinchromosome CDS4035844 456 + 0.401316
NA BF1829 putative transmembrane proteinchromosome CDS2136629 870 - 0.406897
NA BF2944 putative sigma factorchromosome CDS3421418 549 + 0.386157
NA BF1929 putative UmuD/RumA DNA repair proteinchromosome CDS2249949 438 - 0.429224
NA BF1344 putative transcriptional regulatory proteinchromosome CDS1605693 678 - 0.430678
NA BF2087 putative AraC-type transcriptional regulatorchromosome CDS2442297 840 - 0.45
NA BF3380 conserved hypothetical proteinchromosome CDS3991493 642 + 0.436137
NA BF3147 putative LacI-family transcriptional regulatorchromosome CDS3674105 1011 + 0.531157
NA BF3406 conserved hypothetical proteinchromosome CDS4016802 294 - 0.42517
NA BF0989 putative regulatory proteinchromosome CDS1239342 732 + 0.420765
NA BF1401 putative RNA polymerase ECF-type sigma factorchromosome CDS1666711 558 + 0.491039
NA BF0034 hypothetical proteinchromosome CDS43795 162 + 0.320988
NA BF3295 conserved hypothetical proteinchromosome CDS3879431 1380 + 0.400725
NA BF1394 putative RNA polymerase ECF-type sigma factorchromosome CDS1662072 504 + 0.440476
NA BF1722 putative outer membrane proteinchromosome CDS2012223 3324 - 0.395006
NA BF0552 putative LuxR family transcriptional regulatorchromosome CDS658180 600 - 0.528333
NA BF0164 putative two-component system, response regulator proteinchromosome CDS175859 678 - 0.348083
NA BF4143 putative DNA-binding proteinchromosome CDS4876904 228 - 0.45614
NA BF3583 putative RNA polymerase sigma factorchromosome CDS4227060 579 - 0.343696
NA BF1680 hypothetical proteinchromosome CDS1955966 399 - 0.406015
NA BF0685 putative RNA polymerase ECF-type sigma factorchromosome CDS837669 555 - 0.461261
NA BF3557 putative AraC-family regulatory proteinchromosome CDS4190472 876 - 0.374429
NA BF0173 putative SNF family helicasechromosome CDS187162 3051 - 0.443133
NA BF3410 putative RNA polymerase sigma factorchromosome CDS4022354 540 + 0.387037
NA BF2252 putative two component system response regulatorchromosome CDS2630694 696 - 0.449713
NA BF0836 conserved hypothetical proteinchromosome CDS1029985 921 - 0.476656
NA BF0462 putative regulatory proteinchromosome CDS541246 291 - 0.319588
NA BF2109 putative transcriptional regulatorchromosome CDS2464108 591 - 0.365482
NA BF3102 conserved hypothetical proteinchromosome CDS3620906 363 - 0.424242
NA BF0512 putative ROK family transcriptional repressorchromosome CDS592862 981 + 0.472987
NA BF0183 conserved hypothetical proteinchromosome CDS199179 714 + 0.407563
NA BF3933 putative TetR-family transcriptional regulatorchromosome CDS4638950 597 - 0.396985
NA BF0726 putative DNA-binding proteinchromosome CDS891810 270 - 0.285185
NA BF2032 putative TetR-family transcriptional regulatorchromosome CDS2377811 678 + 0.415929
NA BF0031 hypothetical transmembrane proteinchromosome CDS41125 1236 + 0.338997
NA BF1270 putative AraC-family transcriptional regulatory proteinchromosome CDS1525479 843 + 0.376038
NA BF0482 putative acetyltransferasechromosome CDS560475 579 - 0.442142
NA BF3135 putative MarR-family transcriptional regulatorchromosome CDS3655365 441 + 0.512472
NA BF3389 putative RNA polymerase sigma fatorchromosome CDS4001059 576 - 0.383681
NA BF0205 putative transmembrane proteinchromosome CDS223192 1056 + 0.357955
NA BF3333 putative AraC-family regulatory proteinchromosome CDS3932484 867 - 0.351788
NA BF1931 putative two-component system response regulatorchromosome CDS2251993 699 - 0.470672
NA BF2959 conserved hypothetical proteinchromosome CDS3441006 216 + 0.416667
NA BF1055 putative acetyltransferasechromosome CDS1309301 900 - 0.433333
NA BF0401 putative transmembrane proteinchromosome CDS488434 1071 + 0.364146
NA BF0869 putative RNA polymerase ECF-type sigma factorchromosome CDS1085650 549 + 0.32969
NA BF4260 putative transcriptional regulatorchromosome CDS5054741 576 + 0.446181
NA BF0040 hypothetical transmembrane proteinchromosome CDS46514 1140 + 0.353509
NA BF3778 conserved hypothetical proteinchromosome CDS4461569 861 + 0.494774
NA BF2176 putative AsnC-family transcriptional regulatorchromosome CDS2532304 468 + 0.376068
NA BF2630 putative PadR-family transcriptional regulatory proteinchromosome CDS3060955 336 - 0.425595
NA BF3248 putative AraC-family regulatory proteinchromosome CDS3822806 465 - 0.391398
NA BF3633 putative MarR-family regulatory proteinchromosome CDS4288308 447 + 0.431767
NA BF1969 putative ECF-type RNA polymerase sigma factorchromosome CDS2299601 582 + 0.309278
NA BF0134 putative RNA helicase dead-box proteinchromosome CDS140054 1944 - 0.490741
NA BF4213 conserved hypothetical proteinchromosome CDS4977652 1659 - 0.423146
NA BF3313 putative AraC-family regulatory proteinchromosome CDS3908319 858 + 0.400932
NA BF3214 putative RNA polymerase sigma factorchromosome CDS3781162 552 - 0.432971
NA BF3965 putative TetR transcriptional regulatorchromosome CDS4680752 645 - 0.406202
NA BF1116 putative DNA-binding proteinchromosome CDS1371025 270 + 0.348148
NA BF1052 putative AraC-family transcriptional regulatorchromosome CDS1305157 867 + 0.377163
NA BF3939 putative GntR family transcriptional regulatorchromosome CDS4645886 369 - 0.398374
NA BF3751 putative antibiotic resistance-related regulatory proteinchromosome CDS4429037 375 - 0.381333
NA BF1782 putative ParB-family proteinchromosome CDS2067285 1713 - 0.570928
NA BF0915 putative outer membrane proteinchromosome CDS1146141 435 + 0.386207
NA BF0524 putative MarR family transcriptional regulatorchromosome CDS613432 351 - 0.461538
NA BF0168 putative two-component response regulator transcriptional regulatory proteinchromosome CDS180086 687 + 0.464338
NA BF0961 putative RNA polymerase ECF-type sigma factorchromosome CDS1202391 552 + 0.443841
NA BF1514 putative RNA polymerase ECF-type sigma factorchromosome CDS1776039 588 - 0.411565
NA BF0723 putative AraC-family regulatory proteinchromosome CDS889585 894 + 0.41387
NA BF3574 putative RNA polymerase sigma factorchromosome CDS4211617 573 - 0.34904
NA BF4234 putative AraC-family transcriptional regulatory proteinchromosome CDS5011150 888 + 0.384009
NA BF2250 putative exported proteinchromosome CDS2629296 534 - 0.468165
NA BF0859 putative AraC transcriptional regulatory proteinchromosome CDS1062062 897 + 0.432553
NA BF0232 putative ECF-type sigma factorchromosome CDS255275 564 - 0.37766
NA BF0692 putative RelA/SpoT GTP pyrophosphokinasechromosome CDS847547 2244 - 0.456774
NA BF3052 putative transcription termination factorchromosome CDS3548561 2067 + 0.481858
NA BF2975 putative RNA polymerase sigma factorchromosome CDS3456672 513 + 0.463938
NA BF3449 cold shock-like proteinchromosome CDS4075695 210 - 0.457143
NA BF1197 putative ECF-type RNA polymerase sigma factorchromosome CDS1459337 546 + 0.35348
NA BF4310 putative AsnC-family transcriptional regulatory proteinchromosome CDS5116426 465 + 0.460215
NA BF1821 putative RNA polymerase ECF-type sigma factorchromosome CDS2128194 564 + 0.445035
NA BF1730 conserved hypothetical proteinchromosome CDS2021655 2100 + 0.635714
NA BF2169 putative TetR-family transcriptional regulatorchromosome CDS2523545 612 + 0.406863
argR BF0483 putative arginine repressorchromosome CDS561087 474 - 0.453586
cobB BF4307 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferasechromosome CDS5113588 711 - 0.500703
dbpA BF2071 putative ATP-independent RNA helicasechromosome CDS2423047 1332 + 0.498498
fucR BF0210 putative GntR-family regulatory proteinchromosome CDS227088 981 + 0.378186
greA BF4127 putative transcription elongation factorchromosome CDS4854818 465 - 0.395699
nusG BF4020 putative transcription antitermination proteinchromosome CDS4724611 543 - 0.406998
oxyR BF1318 redox-sensitive transcriptional activatorchromosome CDS1581558 927 + 0.501618
parB BF0695 putative ParB-like chromosome partitioning proteinchromosome CDS852049 891 - 0.480359
relA BF2223 GTP pyrophosphokinasechromosome CDS2596375 2214 - 0.439928
rhlE BF2388 putative ATP-dependent RNA helicasechromosome CDS2787273 1257 - 0.417661
rpoA BF3976 putative DNA-directed RNA polymerase alpha chainchromosome CDS4692999 993 - 0.380665
rpoB BF4015 putative DNA-directed RNA polymerase beta chainchromosome CDS4718525 3813 - 0.43509
rpoC BF4014 putative DNA-directed RNA polymerase beta' chainchromosome CDS4714095 4284 - 0.446312
rpoE BF0534 putative RNA polymerase ECF sigma factorchromosome CDS628014 564 + 0.397163
rprY BF3634 two-component system, transcriptional regulatory proteinchromosome CDS4289149 711 - 0.417722
sigA BF2759 putative sigma factor Achromosome CDS3215929 861 - 0.457607
sigE BF0265 putative extracytoplasmic function alternative sigma factorchromosome CDS294884 507 - 0.406312
upaY BF1367 putative LPS biosynthesis related transcriptional regulatory proteinchromosome CDS1634932 519 + 0.420039
upcY BF1009 putative transcriptional regulatorchromosome CDS1260915 519 + 0.452794