Gene list
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COG category: Transcription
Organism: Azoarcus sp. EbN1, EbN1
Number of genes found: 203
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| Azoarcus sp. EbN1, EbN1 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | ebA5163 | Transcriptional regulator, AraC family, | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 3060643 | 1032 | - | 0.666667 |
| NA | ebA6235 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 3692926 | 660 | - | 0.660606 |
| NA | ebA7146 | Two component response regulator | SubName: Full=Two component response regulator; | chromosome | CDS | 4216383 | 663 | - | 0.648567 |
| NA | ebA5860 | predicted ARSR subfamily of helix-turn-helix bacterial transcription regulatory protein | SubName: Full=Predicted ARSR subfamily of helix-turn-helix bacterial transcription regulatory protein; | chromosome | CDS | 3488200 | 591 | + | 0.595601 |
| NA | ebD72 | hypothetical protein with response regulator domain | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1912461 | 444 | - | 0.637387 |
| NA | ebA274 | helicase/SNF2 family domain protein | SubName: Full=Helicase/SNF2 family domain protein; | chromosome | CDS | 167114 | 2652 | + | 0.559578 |
| NA | ebD97 | fragment of hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Fragment; | chromosome | CDS | 3490366 | 330 | + | 0.651515 |
| NA | p1B250 | hypothetical protein | SubName: Full=Uncharacterized protein; | 1 | CDS | 134088 | 984 | + | 0.567073 |
| NA | ebA5855 | probable ATP-dependent DNA helicase | SubName: Full=Probable ATP-dependent DNA helicase; | chromosome | CDS | 3485155 | 1401 | + | 0.621699 |
| NA | ebA1734 | Ribonuclease II | SubName: Full=Ribonuclease II; | chromosome | CDS | 1007928 | 1911 | + | 0.682889 |
| NA | ebD15 | conserved hypothetical protein, putative regulator | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3492996 | 303 | + | 0.610561 |
| NA | ebA483 | transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) | SubName: Full=Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family); | chromosome | CDS | 276634 | 1407 | - | 0.658849 |
| NA | p1B369 | hypothetical protein containing helix-turn-helix domain | SubName: Full=Uncharacterized protein; | 1 | CDS | 201230 | 2478 | - | 0.598063 |
| NA | ebA6875 | predicted regulator of plasmid copy number | SubName: Full=Predicted regulator of plasmid copy number; | chromosome | CDS | 4075128 | 237 | - | 0.535865 |
| NA | ebA4048 | putative transcription regulator protein, IclR family | SubName: Full=Putative transcription regulator protein, IclR family; | chromosome | CDS | 2386446 | 792 | - | 0.683081 |
| NA | ebA6572 | predicted transcription regulator containing helix turn helix domain | SubName: Full=Predicted transcription regulator containing helix turn helix domain; | chromosome | CDS | 3894665 | 444 | - | 0.554054 |
| NA | ebA639 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 373805 | 303 | + | 0.590759 |
| NA | ebC12 | putative cold-shock protein | SubName: Full=Putative cold-shock protein; | chromosome | CDS | 2658239 | 204 | + | 0.534314 |
| NA | ebA2903 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1728845 | 423 | - | 0.650118 |
| NA | ebA6693 | transcription regulator protein | SubName: Full=Transcription regulator protein; | chromosome | CDS | 3976304 | 729 | - | 0.628258 |
| NA | ebA6834 | conserved hypothetical protein, putative s1 rna binding domain protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4053588 | 2349 | + | 0.700298 |
| NA | ebD35 | hypothetical protein, potentially DNA-binding | SubName: Full=Uncharacterized protein; | chromosome | CDS | 884410 | 270 | - | 0.637037 |
| NA | ebA3750 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2210509 | 828 | - | 0.682367 |
| NA | ebA1803 | putative LuxR-family transcriptional regulator | SubName: Full=Putative LuxR-family transcriptional regulator; | chromosome | CDS | 1050191 | 624 | - | 0.692308 |
| NA | ebA3736 | putative gntR-family transcriptional regulator | SubName: Full=Putative gntR-family transcriptional regulator; | chromosome | CDS | 2198890 | 672 | - | 0.645833 |
| NA | ebA4032 | transcription regulator protein, lysR family | SubName: Full=Transcription regulator protein, lysR family; | chromosome | CDS | 2375110 | 867 | + | 0.72895 |
| NA | ebA6134 | putative transcriptional regulator,helix-turn-helix type | SubName: Full=Putative transcriptional regulator,helix-turn-helix type; | chromosome | CDS | 3635797 | 594 | + | 0.6633 |
| NA | ebA5314 | TetR-family transcriptional regulator | SubName: Full=TetR-family transcriptional regulator; | chromosome | CDS | 3156611 | 897 | - | 0.671126 |
| NA | ebA2995 | Transcriptional regulator, lysR family | SubName: Full=Transcriptional regulator, lysR family; | chromosome | CDS | 1788760 | 912 | + | 0.694079 |
| NA | p1B135 | fusion of domains from two conserved hypothetical proteins | SubName: Full=Uncharacterized protein; | 1 | CDS | 68740 | 456 | + | 0.563596 |
| NA | ebA2 | putative bacteriophage-related transcriptional repressor | SubName: Full=Putative bacteriophage-related transcriptional repressor; | chromosome | CDS | 487 | 690 | + | 0.618841 |
| NA | ebA803 | putative helicase | SubName: Full=Putative helicase; | chromosome | CDS | 465886 | 1533 | + | 0.650359 |
| NA | ebA5964 | GCN5-related N-acetyltransferase | SubName: Full=GCN5-related N-acetyltransferase; | chromosome | CDS | 3541323 | 492 | + | 0.621951 |
| NA | ebA1212 | putative serine/threonine protein kinase | SubName: Full=Putative serine/threonine protein kinase; | chromosome | CDS | 712551 | 1788 | - | 0.701342 |
| NA | ebA4487 | regulatory protein, GntR | SubName: Full=Regulatory protein, GntR; | chromosome | CDS | 2661082 | 651 | + | 0.6851 |
| NA | p1B136 | putative histone acetyltransferase-related protein | SubName: Full=Putative histone acetyltransferase-related protein; | 1 | CDS | 69206 | 492 | - | 0.599594 |
| NA | p1B57 | DNA helicase | SubName: Full=DNA helicase; | 1 | CDS | 25305 | 2016 | - | 0.582837 |
| NA | ebA6729 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 3994088 | 711 | - | 0.655415 |
| NA | ebA2413 | helicase (Snf2 family) | SubName: Full=Helicase (Snf2 family); | chromosome | CDS | 1443856 | 2880 | + | 0.621181 |
| NA | ebA4655 | putative transcriptional regulatory protein | SubName: Full=Putative transcriptional regulatory protein; | chromosome | CDS | 2747776 | 1062 | - | 0.677024 |
| NA | ebB68 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1386768 | 294 | + | 0.615646 |
| NA | ebA6111 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 3619212 | 927 | + | 0.658037 |
| NA | ebA4111 | transcriptional regulator, Bvg acessory factor | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 2426206 | 729 | - | 0.705075 |
| NA | ebA2024 | Two component response regulator | SubName: Full=Two component response regulator; | chromosome | CDS | 1194617 | 681 | - | 0.668135 |
| NA | ebA2047 | Transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 1203621 | 690 | + | 0.678261 |
| NA | ebA3727 | putative response regulator | SubName: Full=Putative response regulator; | chromosome | CDS | 2194871 | 681 | - | 0.656388 |
| NA | ebA537 | predicted transcriptional regulator,rf2 family | SubName: Full=Predicted transcriptional regulator,rf2 family; | chromosome | CDS | 309579 | 636 | - | 0.591195 |
| NA | ebA4796 | Serine/threonine-protein kinase | SubName: Full=Serine/threonine-protein kinase; | chromosome | CDS | 2841073 | 1362 | + | 0.631424 |
| NA | ebA1182 | Two-component response regulatory protein | SubName: Full=Two-component response regulatory protein; | chromosome | CDS | 691075 | 687 | - | 0.652111 |
| NA | ebA1664 | probable sigma-N-dependent transcriptional regulator | SubName: Full=Probable sigma-N-dependent transcriptional regulator; | chromosome | CDS | 972588 | 1320 | - | 0.695455 |
| NA | ebA3993 | conserved hypothetical protein,predicted protein kinase family | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2355146 | 1506 | - | 0.701195 |
| NA | ebA715 | TetR-family transcriptional regulator | SubName: Full=TetR-family transcriptional regulator; | chromosome | CDS | 411636 | 750 | - | 0.626667 |
| NA | c2A175 | Transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 1097278 | 858 | + | 0.675991 |
| NA | ebA2797 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1664575 | 2013 | + | 0.702931 |
| NA | ebA2431 | conserved plasmid related protein | SubName: Full=Conserved plasmid related protein; | chromosome | CDS | 1462975 | 2274 | - | 0.644679 |
| NA | ebA350 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 216679 | 342 | + | 0.555556 |
| NA | ebA5646 | Transcriptional regulatory protein of IclR family | SubName: Full=Transcriptional regulatory protein of IclR family; | chromosome | CDS | 3352942 | 801 | - | 0.617977 |
| NA | ebA7092 | hypothetical protein, predicted transcription regulator | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4186811 | 408 | - | 0.629902 |
| NA | ebD107 | putative phage-like regulator protein | SubName: Full=Putative phage-like regulator protein; | chromosome | CDS | 3540015 | 312 | + | 0.612179 |
| NA | p2A165 | hypothetical protein | SubName: Full=Uncharacterized protein; | 2 | CDS | 91892 | 273 | + | 0.582418 |
| NA | ebA1369 | putative transcription regulator protein, lysR family | SubName: Full=Putative transcription regulator protein, lysR family; | chromosome | CDS | 804425 | 915 | + | 0.681967 |
| NA | ebB24 | putative MerR-family transcriptional regulator | SubName: Full=Putative MerR-family transcriptional regulator; | chromosome | CDS | 504247 | 384 | - | 0.606771 |
| NA | ebA1044 | predicted transcriptional regulator,consists of a Zn-ribbon and ATP-cone domains | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 611476 | 516 | + | 0.616279 |
| NA | ebA4502 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 2671502 | 1476 | - | 0.674797 |
| NA | ebA1686 | probable serine/threonine protein kinase | SubName: Full=Probable serine/threonine protein kinase; | chromosome | CDS | 985793 | 2064 | + | 0.676841 |
| NA | ebA2001 | GCN5-related N-acetyltransferase | SubName: Full=GCN5-related N-acetyltransferase; | chromosome | CDS | 1182560 | 495 | + | 0.608081 |
| NA | ebA2019 | GCN5-related N-acetyltransferase | SubName: Full=GCN5-related N-acetyltransferase; | chromosome | CDS | 1191698 | 504 | + | 0.597222 |
| NA | ebA3801 | putative two-component response regulator | SubName: Full=Putative two-component response regulator; | chromosome | CDS | 2239793 | 627 | + | 0.641148 |
| NA | ebA2237 | probable regulatory protein | SubName: Full=Probable regulatory protein; | chromosome | CDS | 1309533 | 1029 | - | 0.599611 |
| NA | ebA2689 | DNA-binding protein | SubName: Full=DNA-binding protein; | chromosome | CDS | 1597323 | 288 | - | 0.663194 |
| NA | ebA3439 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2039609 | 720 | + | 0.669444 |
| NA | ebA508 | TetR-family transcriptional regulator | SubName: Full=TetR-family transcriptional regulator; | chromosome | CDS | 292005 | 618 | + | 0.627832 |
| NA | ebA4984 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2965751 | 2112 | + | 0.696496 |
| NA | ebA3210 | putative response regulator receiver protein | SubName: Full=Putative response regulator receiver protein; | chromosome | CDS | 1918192 | 1806 | - | 0.607973 |
| NA | p2A358 | transcriptional regulatory protein | SubName: Full=Transcriptional regulatory protein; | 2 | CDS | 195367 | 669 | + | 0.603886 |
| NA | ebA250 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 145068 | 873 | + | 0.591065 |
| NA | ebA3757 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2214090 | 726 | - | 0.680441 |
| NA | ebA3804 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 2242086 | 480 | + | 0.647917 |
| NA | ebA5218 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3090418 | 891 | + | 0.603816 |
| NA | ebA1169 | putative two-component system,regulatory protein | SubName: Full=Putative two-component system,regulatory protein; | chromosome | CDS | 680175 | 762 | - | 0.695538 |
| NA | ebB62 | GCN5-related N-acetyltransferase | SubName: Full=GCN5-related N-acetyltransferase; | chromosome | CDS | 1184566 | 405 | - | 0.639506 |
| NA | ebA2682 | putative helicase | SubName: Full=Putative helicase; | chromosome | CDS | 1594124 | 1167 | - | 0.650386 |
| NA | ebA1370 | Transcription elongation factor | SubName: Full=Transcription elongation factor; | chromosome | CDS | 805340 | 477 | - | 0.672956 |
| NA | ebA5533 | hypothetical protein, INTERPRO suggestion: Beta tubulin or Prophage regulatory protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3293023 | 210 | - | 0.590476 |
| NA | ebA6850 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 4065554 | 648 | + | 0.658951 |
| NA | ebA5688 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3378002 | 315 | - | 0.653968 |
| NA | p2A60 | hypothetical protein | SubName: Full=Uncharacterized protein; | 2 | CDS | 38332 | 1299 | + | 0.658968 |
| NA | ebA6513 | transcriptional regulatory protein,TetR family | SubName: Full=Transcriptional regulatory protein,TetR family; | chromosome | CDS | 3859430 | 591 | + | 0.620981 |
| NA | p1B199 | hypothetical protein containing helix-turn-helix motif | SubName: Full=Uncharacterized protein; | 1 | CDS | 113679 | 606 | - | 0.589109 |
| NA | ebA5752 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 3414037 | 636 | - | 0.570755 |
| NA | ebA6755 | transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) | SubName: Full=Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family); | chromosome | CDS | 4011698 | 1407 | + | 0.658849 |
| NA | ebA3295 | Transcriptional regulatory protein | SubName: Full=Transcriptional regulatory protein; | chromosome | CDS | 1962768 | 831 | - | 0.684717 |
| NA | ebA6482 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 3845541 | 921 | - | 0.634093 |
| NA | ebA2878 | predicted transcriptional regulator | SubName: Full=Predicted transcriptional regulator; | chromosome | CDS | 1715633 | 462 | - | 0.614719 |
| NA | ebA2491 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1499464 | 423 | + | 0.600473 |
| NA | ebA2840 | Transcriptional regulator, Sir2 family | SubName: Full=Transcriptional regulator, Sir2 family; | chromosome | CDS | 1689024 | 858 | - | 0.653846 |
| NA | ebA4627 | probable transcription regulator protein | SubName: Full=Probable transcription regulator protein; | chromosome | CDS | 2735483 | 1857 | + | 0.727517 |
| NA | ebA5924 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3522437 | 348 | + | 0.591954 |
| NA | ebA5056 | putative transcriptional regulator,lysR family | SubName: Full=Putative transcriptional regulator,lysR family; | chromosome | CDS | 3000983 | 924 | + | 0.685065 |
| NA | ebA2467 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1485430 | 1692 | - | 0.675532 |
| NA | ebA5610 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 3331095 | 969 | - | 0.671827 |
| NA | ebA5682 | Transcriptional regulatory protein,MarR family | SubName: Full=Transcriptional regulatory protein,MarR family; | chromosome | CDS | 3375437 | 546 | - | 0.602564 |
| NA | ebA4336 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2566326 | 444 | - | 0.635135 |
| NA | ebA6738 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 3999380 | 867 | - | 0.648212 |
| NA | ebA1969 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1158450 | 615 | - | 0.676423 |
| NA | ebA1753 | putative transcriptional regulator | RecName: Full=UPF0301 protein AZOSEA09490; | chromosome | CDS | 1026237 | 567 | + | 0.657848 |
| NA | ebA3954 | hypothetical protein, putative transcription regulator with helix-turn-helix domain | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2329660 | 705 | + | 0.636879 |
| NA | ebA2026 | putative regulatory protein, LuxR | SubName: Full=Putative regulatory protein, LuxR; | chromosome | CDS | 1195597 | 2688 | - | 0.704613 |
| NA | ebA3131 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1864826 | 480 | - | 0.710417 |
| NA | p1B327 | putative kinase | SubName: Full=Putative kinase; | 1 | CDS | 179626 | 1503 | + | 0.586161 |
| NA | ebA666 | helicase (Snf2 family) | SubName: Full=Helicase (Snf2 family); | chromosome | CDS | 389311 | 2898 | + | 0.652864 |
| NA | ebA168 | Protein containing response regulator domain, but no DNA binding domain | SubName: Full=Protein containing response regulator domain, but no DNA binding domain; | chromosome | CDS | 99736 | 372 | - | 0.602151 |
| NA | ebA5719 | Two-component system response regulator | SubName: Full=Two-component system response regulator; | chromosome | CDS | 3390441 | 633 | + | 0.631912 |
| NA | ebD61 | putative transcriptional regulator,possibly phage-related | SubName: Full=Putative transcriptional regulator,possibly phage-related; | chromosome | CDS | 1488272 | 213 | - | 0.633803 |
| NA | ebA5018 | Transcriptional regulatory protein,lysR family | SubName: Full=Transcriptional regulatory protein,lysR family; | chromosome | CDS | 2983058 | 921 | - | 0.679696 |
| NA | ebA2046 | probable TetR-family transcriptional regulator | SubName: Full=Probable TetR-family transcriptional regulator; | chromosome | CDS | 1202466 | 909 | - | 0.686469 |
| NA | ebA2446 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1472093 | 504 | - | 0.632937 |
| NA | c1A29 | Protein kinase | SubName: Full=Protein kinase; | chromosome | CDS | 1374969 | 819 | + | 0.647131 |
| NA | ebA6247 | transcriptional regulator TetR family | SubName: Full=Transcriptional regulator TetR family; | chromosome | CDS | 3698658 | 609 | + | 0.655172 |
| NA | ebA3634 | putative transcription regulator protein, merR family | SubName: Full=Putative transcription regulator protein, merR family; | chromosome | CDS | 2151843 | 486 | + | 0.648148 |
| ORF3 | ebA5292 | putative regulatory protein,conserved in anaerobic benzoate degadation gene clusters | SubName: Full=Putative regulatory protein,conserved in anaerobic benzoate degadation gene clusters; | chromosome | CDS | 3140724 | 453 | + | 0.576159 |
| acxR | ebA4722 | Sigma-54 dependent transcriptional activator | SubName: Full=Sigma-54 dependent transcriptional activator; | chromosome | CDS | 2788320 | 2043 | + | 0.666667 |
| araC | ebA3764 | Transcriptional regulator, AraC family, | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 2216986 | 1137 | - | 0.694811 |
| arsR | ebB173 | transcriptional regulator ArsR family | SubName: Full=Transcriptional regulator ArsR family; | chromosome | CDS | 2971332 | 375 | + | 0.650667 |
| badR | ebA1957 | Transcriptional regulator, protein,possibly involved in regulating genes for cyclohexanecarboxylate metabolism | SubName: Full=Transcriptional regulator, protein,possibly involved in regulating genes for cyclohexanecarboxylate metabolism; | chromosome | CDS | 1149346 | 504 | + | 0.642857 |
| bolA | ebA1303 | BolA-like putative cell cycle protein | SubName: Full=BolA-like putative cell cycle protein; | chromosome | CDS | 768659 | 258 | - | 0.600775 |
| boxR | ebA2762 | putative regulator of aerobic benzoate metabolic operon containing shikimate kinase-like domain | RecName: Full=Shikimate kinase; Short=SK; EC=2.7.1.71; | chromosome | CDS | 1642653 | 903 | + | 0.667774 |
| bzdR | ebA5278 | Putaive regulator of anaerobic benzoate metabolic operon consisting of shikimate kinase-like domain and a Helix-turn-helix domain | RecName: Full=Shikimate kinase; Short=SK; EC=2.7.1.71; | chromosome | CDS | 3134434 | 858 | + | 0.632867 |
| colR | ebA3319 | DNA-binding response regulator ColR | SubName: Full=DNA-binding response regulator ColR; | chromosome | CDS | 1975791 | 684 | + | 0.590643 |
| cspC | ebA2865 | probable cold shock family protein | SubName: Full=Probable cold shock family protein; | chromosome | CDS | 1708040 | 570 | - | 0.564912 |
| cspD | ebA3470 | probably cold shock transcription regulator protein | SubName: Full=Probably cold shock transcription regulator protein; | chromosome | CDS | 2055714 | 204 | - | 0.583333 |
| cysB | ebA2615 | Transcriptional regulator, CysB | SubName: Full=Transcriptional regulator, CysB; | chromosome | CDS | 1559940 | 942 | - | 0.651805 |
| deaD | ebA5738 | ATP-dependent RNA helicase DeaD | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 3402825 | 1977 | - | 0.670207 |
| dinG | ebA6678 | ATP-dependent DNA helicase-related protein | SubName: Full=ATP-dependent DNA helicase-related protein; | chromosome | CDS | 3961573 | 1956 | - | 0.671268 |
| gntR | ebA5664 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 3363106 | 684 | - | 0.603801 |
| greA | ebA4816 | transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 2854120 | 555 | + | 0.590991 |
| greB | ebA4864 | transcription elongation factor | RecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; | chromosome | CDS | 2891657 | 561 | + | 0.643494 |
| hepA | ebA251 | ATP-dependent helicase | SubName: Full=ATP-dependent helicase; | chromosome | CDS | 145949 | 2943 | + | 0.621475 |
| hrcA | ebA4803 | Negative regulator of class I heat shock protein | RecName: Full=Heat-inducible transcription repressor hrcA; | chromosome | CDS | 2843992 | 1026 | - | 0.638402 |
| iclR | p2A140 | putative IclR-family regulatory protein | SubName: Full=Putative IclR-family regulatory protein; | 2 | CDS | 81579 | 789 | - | 0.622307 |
| iscR | ebA6404 | Iron-sulphur cluster assembly transcription factor IscR | SubName: Full=Iron-sulphur cluster assembly transcription factor IscR; | chromosome | CDS | 3804701 | 483 | - | 0.639752 |
| lasR | p1B112 | hypothetical protein | SubName: Full=Uncharacterized protein; | 1 | CDS | 57622 | 687 | + | 0.550218 |
| lexA | ebA3086 | LexA-SOS-response transcriptional repressor (RecA-mediated autopeptidases) | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 1840639 | 612 | - | 0.686275 |
| lysR | ebA811 | transcription regulator protein | SubName: Full=Transcription regulator protein; | chromosome | CDS | 469694 | 900 | - | 0.657778 |
| lysR | ebA1372 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 805897 | 906 | - | 0.6766 |
| lysR | ebA4142 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2441392 | 897 | - | 0.666667 |
| lysR | ebA2490 | Transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 1498860 | 627 | - | 0.658692 |
| lysR | ebA2966 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1765736 | 948 | - | 0.682489 |
| lysR | ebA2202 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1293237 | 888 | + | 0.676802 |
| marR | ebA5386 | Bacterial regulatory protein, MarR | SubName: Full=Bacterial regulatory protein, MarR; | chromosome | CDS | 3199412 | 462 | - | 0.616883 |
| marR | ebA3444 | transcriptional regulator (MarR family) | SubName: Full=Transcriptional regulator (MarR family); | chromosome | CDS | 2041817 | 492 | + | 0.670732 |
| marR | ebA4868 | transcriptional regulator(MarR family) | SubName: Full=Transcriptional regulator(MarR family); | chromosome | CDS | 2895984 | 516 | + | 0.612403 |
| marR | ebA3908 | transcriptional regulator (MarR family) | SubName: Full=Transcriptional regulator (MarR family); | chromosome | CDS | 2306614 | 477 | - | 0.563941 |
| mfd | ebA6555 | Transcription-repair coupling protein Mfd | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 3885874 | 3474 | + | 0.669545 |
| narL | ebA6278 | Nitrate/nitrite response regulator | SubName: Full=Nitrate/nitrite response regulator; | chromosome | CDS | 3715575 | 681 | - | 0.629956 |
| narL | ebA3508 | Nitrate/nitrite TWO-component response regulator NARL | SubName: Full=Nitrate/nitrite TWO-component response regulator NARL; | chromosome | CDS | 2071301 | 663 | + | 0.669683 |
| nirD | ebA881 | NIRD | SubName: Full=NIRD; | chromosome | CDS | 517194 | 1038 | - | 0.66185 |
| nirG | ebA880 | NirG protein precursor | SubName: Full=NirG protein; | chromosome | CDS | 516718 | 480 | - | 0.652083 |
| nirH | ebA878 | NIRH | SubName: Full=NIRH; | chromosome | CDS | 516134 | 588 | - | 0.647959 |
| npd | ebA3329 | NAD-dependent deacetylase 2 (sirtuin/SIR2 like protein) | SubName: Full=NAD-dependent deacetylase 2 (Sirtuin/SIR2 like protein); EC=3.5.1.-; | chromosome | CDS | 1982298 | 783 | + | 0.694764 |
| nusA | ebA5840 | N utilization substance protein A | SubName: Full=N utilization substance protein A; | chromosome | CDS | 3473307 | 1476 | + | 0.621951 |
| nusB | ebA3564 | N utilization substance protein B,transcription termination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 2107890 | 438 | - | 0.643836 |
| nusG | ebA3811 | transcription antitermination protein | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2244748 | 534 | + | 0.55618 |
| ompR | ebA6497 | Transcriptional regulatory protein similar to OmpR | SubName: Full=Transcriptional regulatory protein similar to OmpR; | chromosome | CDS | 3850565 | 747 | + | 0.615797 |
| ompR | ebA4468 | DNA-binding response regulator OmpR | SubName: Full=DNA-binding response regulator OmpR; | chromosome | CDS | 2651277 | 762 | - | 0.675853 |
| paaR | ebA3555 | probable transcriptional regulator of paa operon | SubName: Full=Probable transcriptional regulator of paa operon; | chromosome | CDS | 2098341 | 618 | + | 0.640777 |
| padR | ebA5390 | PadR protein, putative regulator of anaerobic phenylacetate metabolism | SubName: Full=PadR protein, putative regulator of anaerobic phenylacetate metabolism; | chromosome | CDS | 3200495 | 957 | - | 0.634274 |
| parB | p2A246 | plasmid partition-associated transcriptional repressor protein | SubName: Full=Plasmid partition-associated transcriptional repressor protein; | 2 | CDS | 140446 | 1044 | - | 0.623563 |
| parB | p1B141 | partition protein parB | SubName: Full=Partition protein parB; | 1 | CDS | 71815 | 894 | - | 0.548098 |
| parB | p2A290 | ParB, partition protein | SubName: Full=ParB, partition protein; | 2 | CDS | 160560 | 1092 | - | 0.60989 |
| parB | p1B79 | hypothetical protein | SubName: Full=Uncharacterized protein; | 1 | CDS | 38035 | 1674 | - | 0.597372 |
| phoB | ebA3019 | Phosphate regulon transcriptional regulatory protein phoB | SubName: Full=Phosphate regulon transcriptional regulatory protein phoB; | chromosome | CDS | 1801569 | 708 | + | 0.680791 |
| poxR | ebA5755 | Positive regulator of phenol-degradative genes | SubName: Full=Positive regulator of phenol-degradative genes; | chromosome | CDS | 3414973 | 1713 | - | 0.597782 |
| recG | ebA2297 | RecG-like helicases | SubName: Full=RecG-like helicases; EC=3.6.1.-; | chromosome | CDS | 1352655 | 1959 | - | 0.696784 |
| recG | p1B53 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; | 1 | CDS | 23627 | 1542 | + | 0.610895 |
| reg1 | c1A220 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1372978 | 702 | - | 0.700855 |
| reg2 | c1A250 | Regulatory protein, LysR-family | SubName: Full=Regulatory protein, LysR-family; | chromosome | CDS | 1386021 | 651 | - | 0.6298 |
| reg3 | c1A53 | Regulatory protein, LysR-family | SubName: Full=Regulatory protein, LysR-family; | chromosome | CDS | 1387090 | 903 | - | 0.59247 |
| relA | ebA6528 | GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase) | SubName: Full=GTP pyrophosphokinase (ATP:GTP 3-pyrophosphotransferase); EC=2.7.6.5; | chromosome | CDS | 3870713 | 2202 | - | 0.65168 |
| rhlE1 | ebA3563 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 2106258 | 1392 | + | 0.688218 |
| rhlE2 | ebA3682 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 2171527 | 1527 | - | 0.685658 |
| rho | ebA4743 | Transcription termination factor rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2805061 | 1260 | - | 0.607143 |
| rnc | ebA5539 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 3297904 | 678 | + | 0.651917 |
| rpoA | ebA3853 | DNA-directed RNA polymerase (alpha subunit) | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 2273270 | 981 | + | 0.635066 |
| rpoB | ebA3818 | DNA-directed RNA polymerase, beta chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2247844 | 4134 | + | 0.639332 |
| rpoC | ebA3819 | DNA-directed RNA polymerase, beta' chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2252012 | 4230 | + | 0.638771 |
| rpoD | ebA4365 | DNA-dependent RNA polymerase sigma subunits (Sigma70/32) | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 2581941 | 1992 | - | 0.616466 |
| rpoE | ebA4517 | RNA polymerase sigma factor (sigma24) | SubName: Full=RNA polymerase sigma factor (Sigma24); | chromosome | CDS | 2678805 | 570 | - | 0.670175 |
| rpoE2 | ebA5463 | Sigma factor, ECF subfamily | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 3259371 | 600 | + | 0.588333 |
| rpoE3 | ebA6072 | ECF-family RNA polymerase sigma factor | SubName: Full=ECF-family RNA polymerase sigma factor; | chromosome | CDS | 3595278 | 696 | - | 0.686782 |
| rpoE4 | ebA7129 | RNA polymerase sigma factor transcription regulator protein | SubName: Full=RNA polymerase sigma factor transcription regulator protein; | chromosome | CDS | 4208244 | 498 | - | 0.646586 |
| rpoH | ebA4241 | Sigma-32 factor RpoH (RNA polymerase sigma factor) | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 2498846 | 852 | - | 0.638498 |
| rpoN1 | ebA3393 | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 2015440 | 1434 | - | 0.634589 |
| rpoN2 | ebA6931 | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 4110717 | 1443 | + | 0.668746 |
| rpoS | ebA778 | RNA sigma factor RpoS | RecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; | chromosome | CDS | 447348 | 936 | - | 0.616453 |
| rpoZ | ebA3495 | DNA-directed RNA polymerase omega chain | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 2064208 | 216 | + | 0.62963 |
| rumA | p2A243 | DNA repair protein | SubName: Full=DNA repair protein; | 2 | CDS | 138554 | 477 | + | 0.618449 |
| spoOJ | ebA2907 | ParB-like partition protein | SubName: Full=ParB-like partition protein; | chromosome | CDS | 1730389 | 870 | - | 0.694253 |
| spoT | ebA3497 | guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolase | SubName: Full=Guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; EC=2.7.6.5; | chromosome | CDS | 2064449 | 2199 | + | 0.657572 |
| tcr1 | c1A77 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 1401498 | 621 | - | 0.566828 |
| trbA | p2B1 | TrbA protein of DNA transfer system | SubName: Full=TrbA protein of DNA transfer system; | 2 | CDS | 12049 | 363 | + | 0.548209 |
| vacB | ebA1247 | exoribonuclease RNase R (VacB protein) | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 732581 | 2541 | - | 0.658402 |
| waaP | ebA3995 | Lipopolysaccharide core biosynthesis protein WaaP | SubName: Full=Lipopolysaccharide core biosynthesis protein WaaP; | chromosome | CDS | 2356648 | 828 | - | 0.677536 |
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