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COG category: Transcription
Organism: Desulfotalea psychrophila LSv54, LSv54

Number of genes found: 140

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Desulfotalea psychrophila LSv54, LSv54
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA DP0442 probable RNA polymerase sigma-54 factorRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS469576 1461 + 0.490075
NA DP2959 probable leucine-responsive regulatory proteinSubName: Full=Probable leucine-responsive regulatory protein; chromosome CDS3349743 453 + 0.443709
NA DP2865 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS3236283 426 + 0.424883
NA DP0751 probable transcription regulatorSubName: Full=Probable transcription regulator; chromosome CDS847682 306 + 0.447712
NA DP1323 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS1478929 990 + 0.462626
NA DP2020 probable sensory transduction system regulatory proteinSubName: Full=Probable sensory transduction system regulatory protein; chromosome CDS2302246 993 - 0.378651
NA DP0365 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS393482 1410 + 0.465248
NA DP1002 related to serine/threonine-protein kinaseSubName: Full=Related to serine/threonine-protein kinase; chromosome CDS1133616 1311 + 0.543097
NA DP1862 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS2096472 441 + 0.478458
NA DP0898 related to ATP-dependent RNA helicase (RhlE)RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; chromosome CDS1010645 1497 + 0.493654
NA DP2503 probable RNA polymerase sigma factor (RpoD)RecName: Full=RNA polymerase sigma factor; chromosome CDS2851926 1344 - 0.43006
NA DP2189 probable transcription elongation factor (GreA)RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS2509143 486 - 0.479424
NA DP2728 probable transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS3089859 1251 - 0.446043
NA DP0520 related to predicted helicaseSubName: Full=Related to predicted helicase; chromosome CDS564385 3162 - 0.461101
NA DP1258 related to transcription regulator (AsnC-family)SubName: Full=Related to transcription regulator (AsnC-family); chromosome CDS1405877 471 + 0.399151
NA DP1549 related to transcription regulator (TetR-family)SubName: Full=Related to transcription regulator (TetR-family); chromosome CDS1731112 630 + 0.509524
NA DP2192 probable RNA polymerase sigma-B factorRecName: Full=RNA polymerase sigma factor; chromosome CDS2514962 999 - 0.426426
NA DP0319 related to guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseSubName: Full=Related to guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; chromosome CDS346284 387 - 0.421189
NA DP1413 related to ATP-dependent RNA helicaseSubName: Full=Related to ATP-dependent RNA helicase; chromosome CDS1578578 1275 - 0.450196
NA DP2367 related to transcriptional regulator of extracellular enzyme genesSubName: Full=Related to transcriptional regulator of extracellular enzyme genes; chromosome CDS2701009 657 + 0.585997
NA DP2510 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS2859956 630 + 0.493651
NA DP2493 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS2843140 630 + 0.468254
NA DPPB46 conserved hypothetical proteinSubName: Full=Uncharacterized protein; LSv54, large plasmid CDS48172 288 - 0.357639
NA DP0282 related to transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS307857 3555 + 0.519831
NA DP2291 related to two-component system response regulator (hybrid family)SubName: Full=Related to two-component system response regulator (Hybrid family); chromosome CDS2625435 1092 - 0.500916
NA DP0195 related to transcriptional regulator of multidrug-efflux transporter genesSubName: Full=Related to transcriptional regulator of multidrug-efflux transporter genes; chromosome CDS210650 795 - 0.506918
NA DP1152 probable DNA-directed RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS1286188 1032 + 0.403101
NA DP0824 related to transcription regulatorSubName: Full=Related to transcription regulator; chromosome CDS926954 438 - 0.422374
NA DP0944 related to ArsR-family transcription regulatorSubName: Full=Related to ArsR-family transcription regulator; chromosome CDS1053935 357 + 0.453782
NA DP1820 related to multidrug-efflux transporter regulatorSubName: Full=Related to multidrug-efflux transporter regulator; chromosome CDS2056997 852 + 0.377934
NA DP0935 probable cold-shock protein (CspD)SubName: Full=Probable cold-shock protein (CspD); chromosome CDS1048472 201 + 0.447761
NA DP2711 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS3072425 600 - 0.503333
NA DP1407 related to ICFG proteinSubName: Full=Related to ICFG protein; chromosome CDS1571878 2100 + 0.472857
NA DP0933 probable cold shock proteinSubName: Full=Probable cold shock protein; chromosome CDS1047251 201 + 0.457711
NA DP1885 related to two-component system response regulator (Pho family)SubName: Full=Related to two-component system response regulator (Pho family); chromosome CDS2119779 729 + 0.507545
NA DP2786 conserved hypothetical proteinRecName: Full=Transcriptional repressor NrdR; chromosome CDS3149481 471 - 0.430998
NA DP1699 related to transcription regulatorSubName: Full=Related to transcription regulator; chromosome CDS1906648 582 - 0.436426
NA DP2124 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS2440443 573 - 0.438045
NA DP0174 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS190441 615 - 0.360976
NA DP1245 related to ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS1389657 726 + 0.484848
NA DP1494 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1666304 498 + 0.477912
NA DP2161 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2480233 777 + 0.357786
NA DP0423 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS452649 273 - 0.461538
NA DP1239 related to transcriptional regulator proteinSubName: Full=Related to transcriptional regulator protein; chromosome CDS1383747 810 - 0.5
NA DP0237 hypothetical cold-shock proteinSubName: Full=Hypothetical cold-shock protein; chromosome CDS252701 588 - 0.454082
NA DP2914 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3293910 423 - 0.413712
NA DP1688 related to ribonuclease RSubName: Full=Related to ribonuclease R; chromosome CDS1888545 1773 - 0.499718
NA DP2218 conserved hypothetical proteinRecName: Full=UPF0301 protein DP2218; chromosome CDS2551631 573 - 0.460733
NA DP2113 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2425217 831 + 0.424789
NA DP0369 related to sigma factor SigB regulation protein (RsbU)SubName: Full=Related to sigma factor SigB regulation protein (RsbU); chromosome CDS397397 1794 - 0.471014
NA DPPB60 related to transcription regulator proteinsSubName: Full=Related to transcription regulator proteins; LSv54, large plasmid CDS74837 258 + 0.445736
NA DPPB45 hypothetical proteinSubName: Full=Uncharacterized protein; LSv54, large plasmid CDS46708 981 + 0.491335
NA DP0362 probable cold-shock protein (CspB)SubName: Full=Probable cold-shock protein (CspB); chromosome CDS390661 201 + 0.467662
NA DP2347 related to transcription regulator (GntR family)SubName: Full=Related to transcription regulator (GntR family); chromosome CDS2677644 678 + 0.382006
NA DP0995 probable helicaseSubName: Full=Probable helicase; chromosome CDS1121996 4200 - 0.469762
NA DPPB74 probable glycosyltransferaseSubName: Full=Probable glycosyltransferase; LSv54, large plasmid CDS89524 990 - 0.254545
NA DP2678 related to RNA polymerase sigma factor (FliA)RecName: Full=RNA polymerase sigma factor; chromosome CDS3040986 738 + 0.418699
NA DP1405 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1569691 594 + 0.351852
NA DP0725 probable transcriptional activator protein (IlvY)SubName: Full=Probable transcriptional activator protein (IlvY); chromosome CDS802144 912 - 0.466009
NA DP0515 related to two-component system response regulatorSubName: Full=Related to two-component system response regulator; chromosome CDS549281 594 + 0.478114
NA DP1118 probable DNA-directed RNA polymerase, beta' subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS1263774 4050 + 0.465432
NA DP2050 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2328629 711 + 0.369902
NA DP0293 probable transcriptional regulatorSubName: Full=Probable transcriptional regulator; chromosome CDS322157 861 - 0.399535
NA DP1916 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS2166791 816 - 0.45098
NA DP1393 related to transcription regulator (GntR-family)SubName: Full=Related to transcription regulator (GntR-family); chromosome CDS1557842 687 - 0.423581
NA DP0600 probable two-component system response regulator (Pho family)SubName: Full=Probable two-component system response regulator (Pho family); chromosome CDS657133 675 + 0.540741
NA DP1500 related to transcription regulatorSubName: Full=Related to transcription regulator; chromosome CDS1672054 693 + 0.388167
NA DP0302 related to transcription regulatorSubName: Full=Related to transcription regulator; chromosome CDS330065 510 - 0.447059
NA DP1481 probable DNA-directed RNA polymerase, omega chainRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS1653224 312 + 0.416667
NA DP0133 related to cadmium efflux system accessory proteinSubName: Full=Related to cadmium efflux system accessory protein; chromosome CDS149127 351 + 0.48433
NA DP1102 probable transcription termination factor (NusB)RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS1242887 426 + 0.446009
NA DP0943 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1053473 243 + 0.465021
NA DP1867 related to transcription regulator (AraC-type)SubName: Full=Related to transcription regulator (AraC-type); chromosome CDS2100731 876 - 0.498858
NA DP2834 related to RuBisCO operon transcriptional regulatorSubName: Full=Related to RuBisCO operon transcriptional regulator; chromosome CDS3194137 960 - 0.458333
NA DP1389 related to transcriptional regulatorSubName: Full=Related to transcriptional regulator; chromosome CDS1551950 1803 - 0.418192
NA DPPB81 related to transcriptional activatorsSubName: Full=Related to transcriptional activators; LSv54, large plasmid CDS100747 582 - 0.457045
NA DP0884 probable two-component system response regulator (hybrid family)SubName: Full=Probable two-component system response regulator (Hybrid family); chromosome CDS994008 981 + 0.466871
NA DP2614 related to transcription termination factor (NusA)SubName: Full=Related to transcription termination factor (NusA); chromosome CDS2972040 1401 - 0.441827
NA DP0355 probable transcriptional regulatorSubName: Full=Probable transcriptional regulator; chromosome CDS380487 1725 - 0.478841
NA DP2856 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3229469 528 + 0.465909
NA DP2278 conserved hypothetical proteinRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS2612611 801 - 0.453184
NA DP2324 related to predicted transcription regulator (GntR-family)SubName: Full=Related to predicted transcription regulator (GntR-family); chromosome CDS2656093 660 - 0.492424
NA DP2687 similar to regulator of flagellin synthesis, FlgM (partial length)SubName: Full=Similar to regulator of flagellin synthesis, FlgM (Partial length); chromosome CDS3047724 282 + 0.400709
NA DP0750 probable two-component system response regulator (Pho family)SubName: Full=Probable two-component system response regulator (Pho family); chromosome CDS846982 717 + 0.478382
NA DP1531 related to septum site-determining protein (MinD)SubName: Full=Related to septum site-determining protein (MinD); chromosome CDS1713142 1161 - 0.462532
NA DP1976 probable ATP-independent RNA helicase (DbpA)SubName: Full=Probable ATP-independent RNA helicase (DbpA); chromosome CDS2243011 1410 - 0.520567
NA DP2731 related to transcription factorSubName: Full=Related to transcription factor; chromosome CDS3093228 498 - 0.431727
NA DP2029 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS2307879 393 - 0.442748
NA DP3103 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3504611 681 - 0.475771
NA DP0364 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS391892 1398 + 0.474964
NA DP0936 probable ATP-dependent RNA helicaseSubName: Full=Probable ATP-dependent RNA helicase; chromosome CDS1048796 1272 - 0.507862
NA DP0960 probable cold-shock proteinSubName: Full=Probable cold-shock protein; chromosome CDS1072246 201 + 0.477612
NA DP1610 related to multiple substrate aminotransferaseSubName: Full=Related to multiple substrate aminotransferase; chromosome CDS1795311 1188 + 0.494108
NA DP0645 related to two-component system response regulator (Ntr family)SubName: Full=Related to two-component system response regulator (Ntr family); chromosome CDS706586 1125 - 0.391111
NA DP0092 conserved hypothetical proteinRecName: Full=Putative nickel-responsive regulator; chromosome CDS101672 411 + 0.406326
NA DPPB97 probable transcriptional regulatorSubName: Full=Probable transcriptional regulator; LSv54, large plasmid CDS117456 675 - 0.405926
NA DP1497 related to transcriptional regulatorsSubName: Full=Related to transcriptional regulators; chromosome CDS1669270 414 - 0.429952
NA DP2158 probable transcription regulatorSubName: Full=Probable transcription regulator; chromosome CDS2475218 954 + 0.440252
NA DP1246 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1390383 1023 + 0.516129
NA DP2128 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2450652 495 + 0.448485
NA DP1165 probable GTP pyrophosphokinaseSubName: Full=Probable GTP pyrophosphokinase; chromosome CDS1298845 2184 + 0.510073
NA DP2419 related to serine/threonine protein kinaseSubName: Full=Related to serine/threonine protein kinase; chromosome CDS2764518 1143 - 0.418198
NA DP2087 probable Na+/H+ antiporter regulatory protein (NhaR)SubName: Full=Probable Na+/H+ antiporter regulatory protein (NhaR); chromosome CDS2379332 906 - 0.44702
NA DP0539 related to sigma-54 transcriptional regulatorSubName: Full=Related to sigma-54 transcriptional regulator; chromosome CDS586927 1392 - 0.47342
NA DP1872 probable cold-shock protein (CspB)SubName: Full=Probable cold-shock protein (CspB); chromosome CDS2106553 201 + 0.472637
NA DP1888 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2123067 408 - 0.448529
NA DP2708 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3070893 324 + 0.391975
NA DP2200 probable cold-shock proteinSubName: Full=Probable cold-shock protein; chromosome CDS2525393 201 + 0.412935
NA DP2966 probable iron-dependent repressorSubName: Full=Probable iron-dependent repressor; chromosome CDS3356736 507 + 0.467456
NA DP2317 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2650320 615 - 0.385366
NA DP0534 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS582550 483 - 0.445135
NA DP2030 related to repressor proteinSubName: Full=Related to repressor protein; chromosome CDS2308360 711 + 0.412096
NA DP2056 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2332710 276 + 0.423913
NA DP2241 related to transcription activator StcSubName: Full=Related to transcription activator Stc; chromosome CDS2577034 1974 - 0.450861
NA DP2255 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS2590810 1155 - 0.342857
NA DP0709 related to nitrogen fixation protein (AnfA)SubName: Full=Related to nitrogen fixation protein (AnfA); chromosome CDS784076 1554 - 0.488417
NA DP1569 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS1749075 462 - 0.458874
NA DP2573 related to serine/threonine protein kinaseSubName: Full=Related to serine/threonine protein kinase; chromosome CDS2925525 1551 - 0.486138
NA DP1773 related to two-component system response regulator (Nar family)SubName: Full=Related to two-component system response regulator (Nar family); chromosome CDS2000031 666 - 0.496997
NA DPPB100 probable transcription regulatorSubName: Full=Probable transcription regulator; LSv54, large plasmid CDS119481 1197 - 0.401838
NA DP1889 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2123728 1815 + 0.442424
NA DP1906 related to ribonuclease RRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS2145586 2166 + 0.452447
NA DP2964 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS3354641 351 - 0.461538
NA DP3056 probable transcriptional regulatory protein (HydG)SubName: Full=Probable transcriptional regulatory protein (HydG); chromosome CDS3454097 1425 - 0.444912
NA DP2313 related to hydrogenase-4 transcriptional activatorSubName: Full=Related to hydrogenase-4 transcriptional activator; chromosome CDS2645743 1641 + 0.457038
NA DP1117 probable DNA-directed RNA polymerase, beta-subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS1259570 4083 + 0.456527
NA DP1214 related to RNA polymerase sigma factor for flagellar operonSubName: Full=Related to RNA polymerase sigma factor for flagellar operon; chromosome CDS1354487 729 + 0.463649
NA DP1744 related to ATP-dependent helicaseSubName: Full=Related to ATP-dependent helicase; chromosome CDS1960804 2331 - 0.505791
NA DP0659 probable 4-hydroxybutyrate CoA-transferaseSubName: Full=Probable 4-hydroxybutyrate CoA-transferase; chromosome CDS724796 1890 + 0.446032
NA DP2968 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS3357596 498 - 0.548193
NA DP1905 probable GTP pyrophosphokinaseSubName: Full=Probable GTP pyrophosphokinase; chromosome CDS2143254 2109 - 0.454718
NA DP1086 similar to cold-shock proteinSubName: Full=Similar to cold-shock protein; chromosome CDS1225030 531 + 0.453861
NA DP1112 probable transcription antitermination protein NusGRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS1256132 534 + 0.44382
NA DP1964 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2229024 2817 + 0.453319
NA DP1527 unknown proteinSubName: Full=Uncharacterized protein; chromosome CDS1708659 1152 - 0.454861
NA DP0209 related to transcriptional regulator (MarR family)SubName: Full=Related to transcriptional regulator (MarR family); chromosome CDS225832 474 + 0.512658
NA DP2160 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2478085 885 + 0.467797
NA DP0793 probable RNA polymerase sigma factor (RpoD)RecName: Full=RNA polymerase sigma factor; chromosome CDS892034 1605 + 0.46729
NA DP1690 probable ATP-dependent RNA helicaseSubName: Full=Probable ATP-dependent RNA helicase; chromosome CDS1892197 1899 + 0.45445
hypB DP0583 probable hydrogenase accessory protein HypBSubName: Full=Probable hydrogenase accessory protein HypB; chromosome CDS640036 765 + 0.535948