Gene list
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COG category: Transcription
Organism: Desulfotalea psychrophila LSv54, LSv54
Number of genes found: 140
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| Desulfotalea psychrophila LSv54, LSv54 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | DP1165 | probable GTP pyrophosphokinase | chromosome | CDS | 1298845 | 2184 | + | 0.510073 |
| NA | DP2510 | related to transcriptional regulator | chromosome | CDS | 2859956 | 630 | + | 0.493651 |
| NA | DP0936 | probable ATP-dependent RNA helicase | chromosome | CDS | 1048796 | 1272 | - | 0.507862 |
| NA | DP1497 | related to transcriptional regulators | chromosome | CDS | 1669270 | 414 | - | 0.429952 |
| NA | DP1867 | related to transcription regulator (AraC-type) | chromosome | CDS | 2100731 | 876 | - | 0.498858 |
| NA | DP2959 | probable leucine-responsive regulatory protein | chromosome | CDS | 3349743 | 453 | + | 0.443709 |
| NA | DP1744 | related to ATP-dependent helicase | chromosome | CDS | 1960804 | 2331 | - | 0.505791 |
| NA | DP0209 | related to transcriptional regulator (MarR family) | chromosome | CDS | 225832 | 474 | + | 0.512658 |
| NA | DP0133 | related to cadmium efflux system accessory protein | chromosome | CDS | 149127 | 351 | + | 0.48433 |
| NA | DP2087 | probable Na+/H+ antiporter regulatory protein (NhaR) | chromosome | CDS | 2379332 | 906 | - | 0.44702 |
| NA | DP2056 | hypothetical protein | chromosome | CDS | 2332710 | 276 | + | 0.423913 |
| NA | DP2317 | conserved hypothetical protein | chromosome | CDS | 2650320 | 615 | - | 0.385366 |
| NA | DPPB45 | hypothetical protein | LSv54, large plasmid | CDS | 46708 | 981 | + | 0.491335 |
| NA | DP2367 | related to transcriptional regulator of extracellular enzyme genes | chromosome | CDS | 2701009 | 657 | + | 0.585997 |
| NA | DP2160 | conserved hypothetical protein | chromosome | CDS | 2478085 | 885 | + | 0.467797 |
| NA | DP2313 | related to hydrogenase-4 transcriptional activator | chromosome | CDS | 2645743 | 1641 | + | 0.457038 |
| NA | DP0933 | probable cold shock protein | chromosome | CDS | 1047251 | 201 | + | 0.457711 |
| NA | DP1549 | related to transcription regulator (TetR-family) | chromosome | CDS | 1731112 | 630 | + | 0.509524 |
| NA | DP1246 | conserved hypothetical protein | chromosome | CDS | 1390383 | 1023 | + | 0.516129 |
| NA | DP1389 | related to transcriptional regulator | chromosome | CDS | 1551950 | 1803 | - | 0.418192 |
| NA | DP1569 | unknown protein | chromosome | CDS | 1749075 | 462 | - | 0.458874 |
| NA | DP0302 | related to transcription regulator | chromosome | CDS | 330065 | 510 | - | 0.447059 |
| NA | DP1888 | conserved hypothetical protein | chromosome | CDS | 2123067 | 408 | - | 0.448529 |
| NA | DP0935 | probable cold-shock protein (CspD) | chromosome | CDS | 1048472 | 201 | + | 0.447761 |
| NA | DP1323 | related to transcriptional regulator | chromosome | CDS | 1478929 | 990 | + | 0.462626 |
| NA | DP0355 | probable transcriptional regulator | chromosome | CDS | 380487 | 1725 | - | 0.478841 |
| NA | DP2614 | related to transcription termination factor (NusA) | chromosome | CDS | 2972040 | 1401 | - | 0.441827 |
| NA | DP1117 | probable DNA-directed RNA polymerase, beta-subunit | chromosome | CDS | 1259570 | 4083 | + | 0.456527 |
| NA | DP1214 | related to RNA polymerase sigma factor for flagellar operon | chromosome | CDS | 1354487 | 729 | + | 0.463649 |
| NA | DP2786 | conserved hypothetical protein | chromosome | CDS | 3149481 | 471 | - | 0.430998 |
| NA | DP1889 | hypothetical protein | chromosome | CDS | 2123728 | 1815 | + | 0.442424 |
| NA | DP2158 | probable transcription regulator | chromosome | CDS | 2475218 | 954 | + | 0.440252 |
| NA | DPPB60 | related to transcription regulator proteins | LSv54, large plasmid | CDS | 74837 | 258 | + | 0.445736 |
| NA | DPPB74 | probable glycosyltransferase | LSv54, large plasmid | CDS | 89524 | 990 | - | 0.254545 |
| NA | DP1773 | related to two-component system response regulator (Nar family) | chromosome | CDS | 2000031 | 666 | - | 0.496997 |
| NA | DP2200 | probable cold-shock protein | chromosome | CDS | 2525393 | 201 | + | 0.412935 |
| NA | DP1481 | probable DNA-directed RNA polymerase, omega chain | chromosome | CDS | 1653224 | 312 | + | 0.416667 |
| NA | DP0645 | related to two-component system response regulator (Ntr family) | chromosome | CDS | 706586 | 1125 | - | 0.391111 |
| NA | DP2029 | unknown protein | chromosome | CDS | 2307879 | 393 | - | 0.442748 |
| NA | DP0751 | probable transcription regulator | chromosome | CDS | 847682 | 306 | + | 0.447712 |
| NA | DP1407 | related to ICFG protein | chromosome | CDS | 1571878 | 2100 | + | 0.472857 |
| NA | DP3056 | probable transcriptional regulatory protein (HydG) | chromosome | CDS | 3454097 | 1425 | - | 0.444912 |
| NA | DP1690 | probable ATP-dependent RNA helicase | chromosome | CDS | 1892197 | 1899 | + | 0.45445 |
| NA | DP2503 | probable RNA polymerase sigma factor (RpoD) | chromosome | CDS | 2851926 | 1344 | - | 0.43006 |
| NA | DP2218 | conserved hypothetical protein | chromosome | CDS | 2551631 | 573 | - | 0.460733 |
| NA | DP0282 | related to transcription-repair coupling factor | chromosome | CDS | 307857 | 3555 | + | 0.519831 |
| NA | DP2050 | hypothetical protein | chromosome | CDS | 2328629 | 711 | + | 0.369902 |
| NA | DP2865 | unknown protein | chromosome | CDS | 3236283 | 426 | + | 0.424883 |
| NA | DP2856 | conserved hypothetical protein | chromosome | CDS | 3229469 | 528 | + | 0.465909 |
| NA | DP0092 | conserved hypothetical protein | chromosome | CDS | 101672 | 411 | + | 0.406326 |
| NA | DP1885 | related to two-component system response regulator (Pho family) | chromosome | CDS | 2119779 | 729 | + | 0.507545 |
| NA | DP1413 | related to ATP-dependent RNA helicase | chromosome | CDS | 1578578 | 1275 | - | 0.450196 |
| NA | DP1527 | unknown protein | chromosome | CDS | 1708659 | 1152 | - | 0.454861 |
| NA | DP0174 | unknown protein | chromosome | CDS | 190441 | 615 | - | 0.360976 |
| NA | DP0944 | related to ArsR-family transcription regulator | chromosome | CDS | 1053935 | 357 | + | 0.453782 |
| NA | DP0943 | hypothetical protein | chromosome | CDS | 1053473 | 243 | + | 0.465021 |
| NA | DP1862 | related to transcriptional regulator | chromosome | CDS | 2096472 | 441 | + | 0.478458 |
| NA | DP1699 | related to transcription regulator | chromosome | CDS | 1906648 | 582 | - | 0.436426 |
| NA | DP2493 | unknown protein | chromosome | CDS | 2843140 | 630 | + | 0.468254 |
| NA | DP0659 | probable 4-hydroxybutyrate CoA-transferase | chromosome | CDS | 724796 | 1890 | + | 0.446032 |
| NA | DP2914 | hypothetical protein | chromosome | CDS | 3293910 | 423 | - | 0.413712 |
| NA | DPPB100 | probable transcription regulator | LSv54, large plasmid | CDS | 119481 | 1197 | - | 0.401838 |
| NA | DP0824 | related to transcription regulator | chromosome | CDS | 926954 | 438 | - | 0.422374 |
| NA | DP1494 | hypothetical protein | chromosome | CDS | 1666304 | 498 | + | 0.477912 |
| NA | DP1906 | related to ribonuclease R | chromosome | CDS | 2145586 | 2166 | + | 0.452447 |
| NA | DP2192 | probable RNA polymerase sigma-B factor | chromosome | CDS | 2514962 | 999 | - | 0.426426 |
| NA | DP1102 | probable transcription termination factor (NusB) | chromosome | CDS | 1242887 | 426 | + | 0.446009 |
| NA | DPPB46 | conserved hypothetical protein | LSv54, large plasmid | CDS | 48172 | 288 | - | 0.357639 |
| NA | DP0319 | related to guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | chromosome | CDS | 346284 | 387 | - | 0.421189 |
| NA | DP2573 | related to serine/threonine protein kinase | chromosome | CDS | 2925525 | 1551 | - | 0.486138 |
| NA | DP1905 | probable GTP pyrophosphokinase | chromosome | CDS | 2143254 | 2109 | - | 0.454718 |
| NA | DP0293 | probable transcriptional regulator | chromosome | CDS | 322157 | 861 | - | 0.399535 |
| NA | DP2966 | probable iron-dependent repressor | chromosome | CDS | 3356736 | 507 | + | 0.467456 |
| NA | DP0365 | conserved hypothetical protein | chromosome | CDS | 393482 | 1410 | + | 0.465248 |
| NA | DP0195 | related to transcriptional regulator of multidrug-efflux transporter genes | chromosome | CDS | 210650 | 795 | - | 0.506918 |
| NA | DP1239 | related to transcriptional regulator protein | chromosome | CDS | 1383747 | 810 | - | 0.5 |
| NA | DP0725 | probable transcriptional activator protein (IlvY) | chromosome | CDS | 802144 | 912 | - | 0.466009 |
| NA | DP1500 | related to transcription regulator | chromosome | CDS | 1672054 | 693 | + | 0.388167 |
| NA | DP0364 | conserved hypothetical protein | chromosome | CDS | 391892 | 1398 | + | 0.474964 |
| NA | DP1916 | related to transcriptional regulator | chromosome | CDS | 2166791 | 816 | - | 0.45098 |
| NA | DPPB97 | probable transcriptional regulator | LSv54, large plasmid | CDS | 117456 | 675 | - | 0.405926 |
| NA | DP1152 | probable DNA-directed RNA polymerase, alpha subunit | chromosome | CDS | 1286188 | 1032 | + | 0.403101 |
| NA | DP1002 | related to serine/threonine-protein kinase | chromosome | CDS | 1133616 | 1311 | + | 0.543097 |
| NA | DP2128 | hypothetical protein | chromosome | CDS | 2450652 | 495 | + | 0.448485 |
| NA | DP2030 | related to repressor protein | chromosome | CDS | 2308360 | 711 | + | 0.412096 |
| NA | DP2834 | related to RuBisCO operon transcriptional regulator | chromosome | CDS | 3194137 | 960 | - | 0.458333 |
| NA | DP1405 | hypothetical protein | chromosome | CDS | 1569691 | 594 | + | 0.351852 |
| NA | DP1872 | probable cold-shock protein (CspB) | chromosome | CDS | 2106553 | 201 | + | 0.472637 |
| NA | DPPB81 | related to transcriptional activators | LSv54, large plasmid | CDS | 100747 | 582 | - | 0.457045 |
| NA | DP0237 | hypothetical cold-shock protein | chromosome | CDS | 252701 | 588 | - | 0.454082 |
| NA | DP2278 | conserved hypothetical protein | chromosome | CDS | 2612611 | 801 | - | 0.453184 |
| NA | DP1531 | related to septum site-determining protein (MinD) | chromosome | CDS | 1713142 | 1161 | - | 0.462532 |
| NA | DP3103 | conserved hypothetical protein | chromosome | CDS | 3504611 | 681 | - | 0.475771 |
| NA | DP0709 | related to nitrogen fixation protein (AnfA) | chromosome | CDS | 784076 | 1554 | - | 0.488417 |
| NA | DP2964 | unknown protein | chromosome | CDS | 3354641 | 351 | - | 0.461538 |
| NA | DP0898 | related to ATP-dependent RNA helicase (RhlE) | chromosome | CDS | 1010645 | 1497 | + | 0.493654 |
| NA | DP0539 | related to sigma-54 transcriptional regulator | chromosome | CDS | 586927 | 1392 | - | 0.47342 |
| NA | DP2241 | related to transcription activator Stc | chromosome | CDS | 2577034 | 1974 | - | 0.450861 |
| NA | DP0442 | probable RNA polymerase sigma-54 factor | chromosome | CDS | 469576 | 1461 | + | 0.490075 |
| NA | DP0995 | probable helicase | chromosome | CDS | 1121996 | 4200 | - | 0.469762 |
| NA | DP2728 | probable transcription termination factor Rho | chromosome | CDS | 3089859 | 1251 | - | 0.446043 |
| NA | DP0515 | related to two-component system response regulator | chromosome | CDS | 549281 | 594 | + | 0.478114 |
| NA | DP1245 | related to ribonuclease III | chromosome | CDS | 1389657 | 726 | + | 0.484848 |
| NA | DP2020 | probable sensory transduction system regulatory protein | chromosome | CDS | 2302246 | 993 | - | 0.378651 |
| NA | DP2968 | conserved hypothetical protein | chromosome | CDS | 3357596 | 498 | - | 0.548193 |
| NA | DP0362 | probable cold-shock protein (CspB) | chromosome | CDS | 390661 | 201 | + | 0.467662 |
| NA | DP1258 | related to transcription regulator (AsnC-family) | chromosome | CDS | 1405877 | 471 | + | 0.399151 |
| NA | DP2291 | related to two-component system response regulator (hybrid family) | chromosome | CDS | 2625435 | 1092 | - | 0.500916 |
| NA | DP2324 | related to predicted transcription regulator (GntR-family) | chromosome | CDS | 2656093 | 660 | - | 0.492424 |
| NA | DP0884 | probable two-component system response regulator (hybrid family) | chromosome | CDS | 994008 | 981 | + | 0.466871 |
| NA | DP2678 | related to RNA polymerase sigma factor (FliA) | chromosome | CDS | 3040986 | 738 | + | 0.418699 |
| NA | DP0600 | probable two-component system response regulator (Pho family) | chromosome | CDS | 657133 | 675 | + | 0.540741 |
| NA | DP2708 | conserved hypothetical protein | chromosome | CDS | 3070893 | 324 | + | 0.391975 |
| NA | DP1964 | hypothetical protein | chromosome | CDS | 2229024 | 2817 | + | 0.453319 |
| NA | DP0960 | probable cold-shock protein | chromosome | CDS | 1072246 | 201 | + | 0.477612 |
| NA | DP2419 | related to serine/threonine protein kinase | chromosome | CDS | 2764518 | 1143 | - | 0.418198 |
| NA | DP0369 | related to sigma factor SigB regulation protein (RsbU) | chromosome | CDS | 397397 | 1794 | - | 0.471014 |
| NA | DP0534 | unknown protein | chromosome | CDS | 582550 | 483 | - | 0.445135 |
| NA | DP0793 | probable RNA polymerase sigma factor (RpoD) | chromosome | CDS | 892034 | 1605 | + | 0.46729 |
| NA | DP2731 | related to transcription factor | chromosome | CDS | 3093228 | 498 | - | 0.431727 |
| NA | DP1610 | related to multiple substrate aminotransferase | chromosome | CDS | 1795311 | 1188 | + | 0.494108 |
| NA | DP1976 | probable ATP-independent RNA helicase (DbpA) | chromosome | CDS | 2243011 | 1410 | - | 0.520567 |
| NA | DP1688 | related to ribonuclease R | chromosome | CDS | 1888545 | 1773 | - | 0.499718 |
| NA | DP1118 | probable DNA-directed RNA polymerase, beta' subunit | chromosome | CDS | 1263774 | 4050 | + | 0.465432 |
| NA | DP2711 | related to transcriptional regulator | chromosome | CDS | 3072425 | 600 | - | 0.503333 |
| NA | DP1112 | probable transcription antitermination protein NusG | chromosome | CDS | 1256132 | 534 | + | 0.44382 |
| NA | DP2189 | probable transcription elongation factor (GreA) | chromosome | CDS | 2509143 | 486 | - | 0.479424 |
| NA | DP1086 | similar to cold-shock protein | chromosome | CDS | 1225030 | 531 | + | 0.453861 |
| NA | DP1393 | related to transcription regulator (GntR-family) | chromosome | CDS | 1557842 | 687 | - | 0.423581 |
| NA | DP2124 | related to transcriptional regulator | chromosome | CDS | 2440443 | 573 | - | 0.438045 |
| NA | DP0750 | probable two-component system response regulator (Pho family) | chromosome | CDS | 846982 | 717 | + | 0.478382 |
| NA | DP1820 | related to multidrug-efflux transporter regulator | chromosome | CDS | 2056997 | 852 | + | 0.377934 |
| NA | DP2255 | unknown protein | chromosome | CDS | 2590810 | 1155 | - | 0.342857 |
| NA | DP2347 | related to transcription regulator (GntR family) | chromosome | CDS | 2677644 | 678 | + | 0.382006 |
| NA | DP2113 | conserved hypothetical protein | chromosome | CDS | 2425217 | 831 | + | 0.424789 |
| NA | DP2687 | similar to regulator of flagellin synthesis, FlgM (partial length) | chromosome | CDS | 3047724 | 282 | + | 0.400709 |
| NA | DP0423 | hypothetical protein | chromosome | CDS | 452649 | 273 | - | 0.461538 |
| NA | DP0520 | related to predicted helicase | chromosome | CDS | 564385 | 3162 | - | 0.461101 |
| NA | DP2161 | hypothetical protein | chromosome | CDS | 2480233 | 777 | + | 0.357786 |
| hypB | DP0583 | probable hydrogenase accessory protein HypB | chromosome | CDS | 640036 | 765 | + | 0.535948 |
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