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2024-05-03 13:26:19

Gene list

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COG category: Transcription
Organism: Candidatus Pelagibacter ubique HTCC1062, HTCC1062

Number of genes found: 47

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Candidatus Pelagibacter ubique HTCC1062, HTCC1062
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SAR11_1248 Winged helix DNA-bindingchromosome CDS1188881 972 - 0.26749
NA SAR11_0363 Bipartite response regulatorchromosome CDS354747 582 + 0.195876
NA SAR11_0203 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domainchromosome CDS205160 564 - 0.352837
NA SAR11_0326 putative acetyltransferasechromosome CDS324191 504 - 0.279762
NA SAR11_1071 GCN5-related N-acetyltransferasechromosome CDS1038595 264 + 0.318182
NA SAR11_1242 probable transcription regulatorchromosome CDS1184000 1434 + 0.298466
NA SAR11_0138 Transcriptional regulatorchromosome CDS144899 360 - 0.3
NA SAR11_1243 probable transcriptional regulatorchromosome CDS1185434 891 - 0.308642
NA SAR11_0090 Unknown proteinchromosome CDS104265 255 - 0.196078
NA SAR11_1020 Acetyltransferasechromosome CDS999127 444 + 0.337838
NA SAR11_0958 transcription regulatorchromosome CDS940786 372 + 0.241935
NA SAR11_1273 acetyltransferasechromosome CDS1209188 468 + 0.324786
NA SAR11_0860 probable transcription regulatorchromosome CDS829409 417 - 0.2494
NA SAR11_1058 GTP pyrophosphokinasechromosome CDS1025894 1746 - 0.290951
carD SAR11_0423 hypothetical proteinchromosome CDS410672 900 - 0.294444
chvI SAR11_0199 two-component system response regulatorchromosome CDS200071 708 - 0.29661
cspE SAR11_0477 cold shock proteinchromosome CDS466720 213 + 0.361502
cspL SAR11_1274 cold shock DNA-binding domain proteinchromosome CDS1209774 207 + 0.347826
greA SAR11_0103 Transcription elongation factorchromosome CDS114400 477 + 0.30608
lexA SAR11_0921 repressor LexAchromosome CDS886362 678 - 0.331858
merR SAR11_1034 transcription regulatorchromosome CDS1008751 378 - 0.222222
mucA SAR11_0635 hypothetical proteinchromosome CDS621992 396 - 0.320707
nusA SAR11_0388 transcription termination factorchromosome CDS378786 1554 + 0.305663
nusB SAR11_1042 Antitermination protein NusBchromosome CDS1014708 405 - 0.25679
nusG SAR11_1128 transcription antitermination protein NusGchromosome CDS1084692 531 - 0.320151
parB SAR11_0354 chromosome partitioning proteinchromosome CDS346398 849 + 0.28033
petP SAR11_0087 transcriptional regulatorchromosome CDS101880 438 + 0.253425
petR SAR11_0088 two-component systemchromosome CDS102310 678 + 0.255162
phoB SAR11_1174 phosphate regulatory proteinchromosome CDS1128011 681 - 0.303965
recG SAR11_0993 ATP-dependent DNA helicase recGchromosome CDS972986 2052 - 0.263158
rho SAR11_0348 transcription termination factor rhochromosome CDS338267 1269 + 0.338849
rlhE SAR11_0164 probable ATP-dependent RNA helicasechromosome CDS166432 1749 - 0.331046
rnc SAR11_1053 ribonuclease IIIchromosome CDS1022846 669 - 0.261584
rpoA SAR11_1093 DNA-directed RNA polymerasechromosome CDS1058652 1029 - 0.310982
rpoB SAR11_1123 DNA-directed RNA polymerasechromosome CDS1078532 4092 - 0.313783
rpoC SAR11_1122 DNA-directed RNA polymerase beta prime chainchromosome CDS1074360 4170 - 0.326619
rpoD SAR11_0037 RNA polymerase sigma factorchromosome CDS41900 1788 - 0.305928
rpoH SAR11_0606 RNA polymerase sigma-32 factor (rpoH) RP303chromosome CDS592460 882 - 0.315193
rpoZ SAR11_1194 DNA-directed RNA polymerase omega chain (RNAP omega subunit)chromosome CDS1145280 543 - 0.342541
rsbU SAR11_0064 Sigma factor sigB regulation proteinchromosome CDS77115 1347 - 0.282108
scpB SAR11_0974 segregation and condensation protein bchromosome CDS956384 702 + 0.30057
sigB SAR11_1218 probable sigma factor SigB regulation proteinchromosome CDS1164991 702 + 0.274929
stc SAR11_0273 transcriptional regulatorchromosome CDS275137 1083 + 0.308403
sufA SAR11_0738 Transcriptional regulatorchromosome CDS722560 426 + 0.284038
yacB SAR11_0899 Bvg accessory factorchromosome CDS863860 747 + 0.243641
yajF SAR11_0768 probable NAGC-like transcription regulatorchromosome CDS744621 903 + 0.333333
ybaD SAR11_1047 4-hydroxybenzoate octaprenyltransferasechromosome CDS1018267 459 - 0.313726