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# Escherichia coli O157:H7 EDL933, EDL933

>Z2395 unknown protein encoded within prophage CP-933R
MLVSQVLRSNFXREEILMETVFDALKAMGKATSVELATRLDISREEVLNE
LWELKKAGFVDKSVYTWRVADNNVQQEQPAPAELPEETTMATVAKISECD
LTATIEQRGPQTADELATLFGTTSRKVASTLAMAISKGRLIRVNQNGKFR
YCIPGDNLPAEPKAASVAETDGKAFPQPTGVALPVQEAATQEDIKTETVA
DIVQSLPSFTETRADDLVLPSLHMANRELRRAKNHVQKWERVCAALRELN
KHRDIVRQIFDSSSRIVSEK
>Z0442 putative AraC-like transcriptional regulator
MRPLTVAIIAVAGFSPFHLSVPFIVFSEKMAEKKRFHVIICAEKPGNVDS
ADGFSVTATHDYTAVIQADIVIIPYWGTITQKPPQKLLEALTTARDNGAQ
IVGLCLGTFVLGYAGLLKNKRAATHWEFEREFQARFPQTHLDINALYVDD
DGIITSAGTAAALDCCLYIVRQHFGSDYANHIARRMVVPPYRTGGQAQFI
EQPVPKNTHDERINLLLDYLRQNIAQQHDLDSLAQRVMMSRRTLTRHFMK
ATGSSIAEWLITERLRRSQELLGSSQLPVERIAAEVGFLSPVTWRQHFKS
HFGVSPAEWRKTFRGMA
>Z4258 partial putative transcriptional regulator LYSR-type
MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEEQIGYTL
FTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGID
NTYPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQH
VSARVQELENLTISELPPLRLNFLVSRRYEERQEQELLQELP
>Z1020 putative ATP-dependent helicase
MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL
AIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL
KKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ
EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY
YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG
HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI
PERLNAHCEELYELIASLNNILNXYMPAGQEAEHRFAMGELPDEVLEICQ
RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS
KLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI
VIPRMRVEPSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRF
LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL
KGDMLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL
IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG
IVKKKEKTKSPRRRRR
>Z0346 putative LysR-like transcriptional regulator
MAKRENYNELYLFMQVVREGSFTAAAKRLGLAQSGVSRSVRELEERLGVQ
LLVRTTRKLSLTQAGEQLYQKTASGFEMLDLGLATLAHYRETPSGTVRIN
ASQHAIDKCLLPKLAVFKQRYPDIQLELINESRFVDIIEERFDAGVRLGP
EVSQGMVAVRITPDMEMAIVGTPEHFRRYGFPQTPADLKAHPCIAYQFAD
GSVYQWELNQDDKKITHQPEGQWAFSDSYMEAEAARLGLGLAYVPVELVA
DDLEHGKLIRVLQRYSLRMEGLFLYYPHRNVSPALRMVIDTLKI
>Z4176 putative 2-component transcriptional regulator
MMGAELVKWVKSHKIDAHIITFVAKMPYIDSIKLLEAGAKGCVWKTSHPA
KLNRAIDSISNGYTYFDSVHMDCEKISSRYSSDNQLTNRESEILQLIADG
KTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMGVCTI
>Z6021 orf, hypothetical protein
MLSPSSINLGCSWNSLTRNLTSPDNRVLSSVRDAAVHSDSGTQVTVGNRT
YRVVVTDNKFCVTRESHSGCFTNLLHRLGWPKGEISRKIEAMLNTSPVST
TIERGSVHSNRPDLPPVDYAQPELPPADYTQSELPRVSNNKSPVPGNVIG
KGGNAVVYEDMEDTTKVLKMFTISQSHEEVTSEVRCFNQYYGSGSAEKIY
NDNGNVIGIRMNKINGESLLDIPSLPAQAEQAIYDMFDRLEKKGILFVDT
TETNVLYDRMRNEFNPIDISSYNVSDISWSEHQVMQSYHGGKLDLISVVL
SKI
>Z5899 putative ATP-dependent helicase
MNKQNYAPGMRVVIRDAEWRIRRADDSGDGGYLLTCDGISELVRGKEGLF
LTKLEQKVEILDPAKTHLVEDESANYQAAQLYIESQLRQRVPTDSKVHFG
HLAAMDSMPFQLDPTRMALAQPRQRILIADAVGLGKTLEAGILVSELIRR
GRGKRILVLAVKSMLTQFQKEFWSRFAIPLTRLDSAGLQKVRNRIPTNHN
PFHYFDKTIISIDTLKQDIEYRHHLENAWWDIIVIDEAHNVAERGTSSLR
SKLAKLLAGRSDTLIMLSATPHDGKAESFASLMNMLDPTAIANPKEYEYA
DFADKNLVVRRFKKDVKDQMSGEFPERNIVKLTRLASGAEEEAYRRLVES
QFRDDDDEQAQSNKGRLFKITLEKALFSSPMACASVVANRLKRLESRKDH
NSQSQINELESLLLALNNIDASQFSKYQLLLDTIRKDLAWKANNTEDRLV
IFTESIKTLEFLEQQLRADLKLKDDQIATLRGDQGDTVLMETVEAFGKTQ
SPLRLLVCSDVASEGINLHHLSHKMIHFDIPWSLMVFQQRNGRIDRYGQK
HQPQIRYLLTEASEPQINGDMRVLEVLINKDEQAQKNIGDSSEFTGKFTQ
EEEEEQVAEFMMQDDGASLFDQLLNSNVSESAEHDLFGEICSAVSSDASM
VTETDTSLFASEQAYCERALGYLKASGQTIQYETLPDNTLSLVAPEELRR
RFNQLPPEIAPENWQLYLSQDKTVITDAIARARGEQHAWPDVQYLWQINP
VVQWLDDKISSAFGRHQAPVIRLPYLLEPDEDHFILSGLFPNRKSHPMVN
PWIVVSFNRESLIGSQPFAEFLQRHPQLSNKLTNSGGKDRNHQRQQDLLE
AAIAHAREVFIHDRNAFETHINQQLNEHLQKLDVLRGRQLSQLELDFADN
KQQLSVKQSRKEQRQREIEHNFDSYIEWIEDTMTTEKEPYIQVIAVITGA
EG
>Z3946 putative DNA binding protein
MNQHNTRLIRLPEVLHRTGYGKAWIYHLINQNRFPSPVKIGARSVAFIES
EVDEWIQLTIENSRKHVA
>Z2280 multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system
MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVSHAYQLL
ESQGYIIARPQSGYYVAPQAIKMPKVPVIPVTRDEAVDINTYIFDMLQAS
RDPSVVPFASAFPDPRLFPLQQLNRSLAQVSKTATAMSVIENLPPGNAEL
RQAIARRYALQGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPC
FYGALQALERLRLKALSVATDVKEGIDLQALELALQEYPVKACWLMTNSQ
NPLGFTLTPQKKAQLVALLNQYNVTLIEDDVYSELYFGREKPLPAKAWDR
HDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQRLQLMSTLSTSSPMQLA
LVDYLSTRRYDAHXRRLRRQLAERKQRAWQALLRYLPAEVKIHHNDSGYF
LWLELPEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWLWG
EREEQAVKQLGKLIQERL
>Z1644 unknown
MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVD
CVLWVKADEVVANDYNPNVMAPGEKKLLKQSLEKDGFTQPVVVSEEKNHY
LVVDGFHRQVLGREAGTGKRLKGWLPVVCINPERKGQASRIAATIRHNRA
RGKHQITSMSDIVRDLSRLGWTNERIGTELGMDQDEVLRLKQISGLTELF
QEEDFSPAWTVR
>Z1039 putative toxin
MSRRAGTPTAKKVTQLVNEEEHVEGFRQVREAHRRELIDDYVELISDLIR
EVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEK
LAQESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQ
KHGAK
>Z0309 putative cI repressor protein for prophage CP-933H
MSAKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGA
LFNGINALNAYNAALLAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRS
EYEYPVFSHVQAGMFSPELRTFTKGDAEKWVSTTKKASGSAFWLEVEGNS
MTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSG
QVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG
>Z4381 orf; hypothetical protein
MIQKDKTRVDIYGERFRTRASQLTPGLRAVASYINEHREVVLDQTAMEIA
ATLNTSDATVIRAIQALGFAGLRDLKRTLEQWLGPALSSSEKMSTTVSNL
TSDVNTAIDFVLEGHLYTCNVLSEPENRHALAQAVALLVQARQVAIFGIG
ASGILADYTARLFNRIGLPATALNRTGIGLAEQLIALQRGDVLIMMAQKS
AHREGLTTLREARRLGIPVILLTNALDSRFSKDASIVIHVPRGDEKGKTP
LHGTVLLCLEMIVWSVASAVPQRAVKTIKRINDFHRGLKTGRKNG
>Z0392 
MLTASRYQNQIIRWLLRPLPGDMSDFWLLTARELSVLKILMQGMSFSEIA
RYEQRSSKTLHAIATRALMKLGLGTLSDFRLLYTGCGDSRVKRNIRLHAR
YVGQHSAHRLTQYVQNMVSGILYPEKVAVGESINSDAISGKVLPGQRKNI
SKKRPGLL
>Z1309 orf, hypothetical protein
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYL
RACEQSAQYCVKYPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSK
YSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAK
MCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTP
KQEFPAELE
>Z5151 orf; hypothetical protein
MTAKTKFKSPAFEAIHSAAAGLSSVNAISAETMRTFDKACLTSVQDLQPV
EIKALREKLKVSQPVFAHYLNTSVSTVQKWESGAKRPNGISLKLLSIVQK
HGLEVLL
>Z2724 putative ARAC-type regulatory protein
MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNETELIYVK
KGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQ
FQGAEENHLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLW
DAFAYTLAILYYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLE
QLSKKFRASVSYICHEFTKEYRISPINYVIQRRMTEAKWSLTNTELSQAE
ISWRVGYENVDHFAKLFLRHVGCSPSDYRRQFKNCFAEQEILSEFPQPVS
LAG
>Z0342 putative LysR-like transcriptional regulator
MKIDLNLLPIFIAVAEESNFSKAAARLGVTRSAVSQGIRRLEDAFGTMLV
MRTTRSVNLTEAGERLHKSLSLPLSGIEAAFEEMVSDHVPRGLLRIAVTS
IAEEFLSGPLIASFAAANPAVTLDIVVTDEEFDIVAAGYDAGVRLGEVIE
KDMIAVPLTGRQREMVVASPSYLAANSTPVHPRELVNHKCIGWRQSPEVA
PYRWPFEENGRAFDLAIEPQITTNDLRLMLRLALAGGGITIATQETFRPY
IESGKLVSLLDDFLPQFPGFYLYFPQRRNIAPKLRALIDHVKEWRQQLA
>Z2299 putative transcriptional regulator LYSR-type
MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFLTSLMEK
NSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLT
GARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGPNNDVV
RVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDI
GIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVV
VSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVP
SGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRK
SMPF
>Z2958 orf, hypothetical protein
MGFALWGKLELNQRDGFLDCPHGDRVCGSGMMSKVDILQLTGHFFTNFNG
RDYIENIQNLFDNQLASNHIRNQFLIGIQRLGHRKLLIAF
>Z1204 unknown
MGDSVTPEIIGNMIRQYFSQERPEEETIQALNHLRRVLHEVSPFAHEPVD
CVLWVKADEVVANDYNPNVMAPGEKKLLKQSLEKDGFTQPVVVSEEKNHY
LVVDGFHRQVLGREAGTGKRLKGWLPVVCINPERKGQASRIAATIRHNRA
RGKHQITSMSDIVRDLSRLGWTNERIGTELGMDQDEVLRLKQISGLTELF
QEEDFSPAWTVR
>Z5200 
MVDNVTVSRVCIQSPSFVPDLDGEKNKSQLFVDDIVAYLKSPSVYSLEKE
GPLNHFVNHCSEVELGFYSDGAYSILVSRSKQQPEGMILTVSDADAINIV
HISVSPVLIKFLDDIFTCLHTYPDDESFTKEQIKANSKYDIVDYNCLLHF
TGKPKSLIECRHFALQYCIDSMNEHTGKVPLKAYYSSPEDIQKHIPFELE
QQFNNLQKNPPPGTCVVASDKFGEALSVFFHRMEKEKLTHMTAIVQSQTH
AMAVRLRIKKTPAGETEYVVSFYDPNATNTAVRYKANNCDSFGSLQSFIN
IQQAKQKWVITDICSECVGITPYLPREQAHLLSGIENELQPPLSPPALFL
LMRMGIYKNIVLFFDKLKNSQEMTASKALDILAAKSPEGIYGLCVLLYHN
TIDKFNDYITNLKELTRKYNFSQEDLETLLLAKDNLGVSWIPRALKNNQN
KIVKAWLLAIDDFEKEFGVNKNEILLRIGKEIDSIDDLNSAIRTNDYNVV
NILLANIKAKMFKNELNKEDILKLMAAREKVAGASDKWTKASGLYSAIVK
GHTKIVAAWMETAEVIASHYENDKDVVRELLSLSRNNAVCSLYVASYKTM
SKQVIDVYLNAAIRLALQHGFTFDEILEQFTRDFDGKSFSLAVEKADDIY
GSLAENIQNCGW
>Z4048 putative regulator
MIAADSLPGVYMTLRNKAFHQLRQLFQQHTARWQHELPDLTKPQYAVMRA
IADKPGIEQVALIEAAVSTKATLAEMLARMENRGLVRREHDAADKRRRFV
WLTAEGEKILAAAIPIGDSVDEEFLGRLSAEEQELFVQLVRKMMNT
>Z3395 putative regulator
MYNGISGREITLRLWQMANWAQKLKLHHLEMLVALGEQGNLTHVARMMNI
TQPALSKWLSQLEDEIGITLFERHSKGLRPTEGGKLLLQHAQRLINDMER
SQHELARFKQGGLVGSLKIGCSPVATDCVSQAILHLLTKMPTLHLNIEEK
VMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYQVLYTEPVCFVARPEHPL
AKYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASM
NVSTNLLQSSDMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRN
NETPSYALSQFLHFLQQN
>Z5987 
MIDLENQEREIINLMFSQRISWLAAVRIRHKLSLAEVSKMLGISINSLKQ
IEKTERLSSNIKSKMAEIYGCPPELLICPSWMTAEHK
>Z3973 
MPRYQDIARQLKTVIEQGKLKPGARLPSSRTWSQELGVSRSTVENAYAEL
VAQGWLVRRGQAGTFVSEQIHPQQSAVDVVAFAGESQQPLPFQMGLPALD
LFPRELWARVMGRRLRTQTRFDLALGDVCGEAALREAIVDYLRVSRGIDC
QPEQVFITHGYAASMALILHXLAQPGDGMWMEDPGFPLIRPIVTRHGVEI
LPVPVDDNGLDVTSGIQNYPDARFALITPAHQSPLGVALSLARRYQILEW
AERSQAWIIEDDYDSEFRYHGKPLPALKSLDAPQRVIYAGTFSKALFPAL
RCAWLVVPVEQISQFRQQASLEPCAVPVLWQNTLADFIREGHFWRHLKKM
RQHYAQRRQWIEQALTQQGFQVVPQKGGIQMVIKLAGNDVTFVHKANAAG
LAVQALSDWRIRSSEDGGLLLSFTNIVSESMARQVAQQLRSALN
>Z3025 
MGALKLLDDKHGELKSMRTAPNYLRRGVASLILRHILQVAHDRCLHRLSL
ETGTQAGFTACHQLYLKHGFVDCEPFADYQFDPHSRFLSLTLCEDNELP
>Z3647 putative ARAC-type regulatory protein
MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSLCIDFPR
LDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFA
PTWLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQ
NIIQPLVLSLLHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTR
ESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRMAKARMILQKYHLSIH
EVAQRCGFPDSDYFCRVFRRQFGLTPGEYSARFQG
>Z5619 putative transcriptional regulator of sorbose uptake and utilization genes
MQNQEAAMENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTNISRLLK
RGRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLA
MMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPII
GGPSGKLESRYHVNTLTYSAAAKLKGESHLADFPALLDNPLIRNGIMQSQ
HFKTISAYWDNLDVALVGIGSPAIRDGANWHAFYGGEESDDLNARQVAGD
ICSRFFDIHGEMVETNMSEKTLSIEMNKLKQARYSIGIAMSEEKYSGIIG
ALRGKYINCLVTNSSTAELLLK
>Z3495 putative regulator
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLR
DRRKAIQLTTAGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFP
SVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFP
VSGMYSVPIYQDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELS
IMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELTLKTIADELC
SVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
>Z5684 putative transcriptional regulator
MMRSVTMKPVXLVVBDDTAICALLQDVLSEHVFTVSVCHTGQEAILRIEG
DPDIALVVLDMMLPDTNGLRVLQQIQKLRPTLPVVMLTGMGSESDVVVGL
EMGADDYICKPFTPRVVVARLKAVLRRVGALAVNDEKSAGLSFNGWYLDT
MRCQLHNPLQQHVELTQGEYGLLLALAQNARRVLSREQLLAFTHSDSVEV
FDRTIDVLIMRLRRKIELNPHQPMLIKTLRGLGYVFAADVH
>Z5868 
MVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALKAMEEAREMG
FKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>Z0509 unknown
MRKITSVSVGEQLDSFITRMVQSGRYGSASEVMRSALRLLEQQESRDEAV
RNAVIEGLESGESSMTLRDIAAERKQKHRV
>Z0336 putative regulatory protein encoded in prophage CP-933I
MRNISVSAPAPAAPLFPVSNHHERFLRLPEVMHLCGLSRSTVYDLISRDA
FPKQIPLGGKNVAWAQSEVSAWMADRISARGRGCDA
>Z2510 putative transcriptional repressor
MTSKLEIRHKQRQDEIINAARRCFRRCGFHAASMSQIASEAQLSVGQIYR
YFANKDAIIEEMVRRIIDFRIAQMDIDARTDHFPEVLALRKSLNEDDDAL
MLEVAAEATRNPRVMAMLEEADARMFANGCAHMKRMHPHLSEEHIRCCVE
VFATMMEGTVYRRLTPQKSDPQHLQEIYQDIVSMLINK
>Z0067 
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREV
FLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQ
RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQ
LVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR
QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS
HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDL
INYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ
ALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD
FPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESL
DQAGWRLDALRLIVVTHQ
>Z2092 unknown protein encoded within prophage CP-933O
MKIKHEHIRMAMNAWARPDGEKVPAAGITQAYFELGMTFPELYDDSHPEA
LARNTQKIFRWIEKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYY
REIVERRDRLVKDVDDFVAAAIAWGTLTNSGGQPGNAVVVH
>Z3626 sucrose specific transcriptional regulator
MASLKDVARLAGVSMMTVSRVMHNAESVRPATRDRVLQAIQTLNYVPDLS
ARKMRAQGRKPSTLAVLAQDTATTPFSVDILLAIEQTASEFGWNSFLINI
FSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYGENIVLANCVAD
DPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQGFE
QAWRDAGRDLAEVKQFHMATGDDHYTDLASLLNDHFKSGKPDFDVLICGN
DRAAFVAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHDI
IGREAALHIIEGREGGSVTRIPCPLLIRCST
>Z4777 orf; hypothetical protein
MGITAPTPLTSEHNLADFCCSDHGMNEWLKKKALKNHSSGLSRVYVICIA
NTRQVIGYYCLSTGSIQRNLAPGAMRRNAPESLPVVVLGRLAIDQAWAGK
GLGVALLKDAVYRTMSIAQQVGVRALIVHALDDSVRNFYLKYAFVPSPFQ
SLTLLYPITLE
>Z2269 orf, hypothetical protein
MNSFCHAGRVGQKTREGIKMPGTEKMKHVSLTLQVENDLKHQLSIGALKP
GARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVPEVGKRQ
LDEINRIRYELELMAVALAVENLTPQDLAELQELLEKLQQAQEKGDMEQI
INVNRLFRLAIYHRSNMPILCEMIEQLWVRMGPGLHYLYEAINPAELREH
IENYHLLLAALKAKDKEGCRHCLAEIMQQNIAILYQQYNR
>Z2753 orf, hypothetical protein
MASGDLVRYVITVMLHEDTLTEINELNNYLTRXGFLLTMXDDEGNIHELG
TNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK
>Z0405 
MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVV
LFTRSTRSIELTESGRYFFRKATDLLNDFHAIKRSIDTISQGIEARVRIC
INQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAI
GAPDTLLDGGGIDYTEIGAIRWAFAIAPDHPLAFVPEPSPKANCVSTLIL
WWRTPRIRLIKKWAGCCTGRSQFWCQISTPNVSARF
>Z2199 orf, hypothetical protein
MSPLRYQKWLRLNEVRRTMLNEHYDVTTAAYAVGYESLSHFRREYLRMFG
ESPKRDITRLRKSVGQL
>Z4198 putative regulatory protein for type III secretion apparatus
MIEEGLLLPMNVLLQGQKLTLLDPEMWFLRGNENKDVTLVITIGNNHQKL
MVVEDILLLIDRSQIEVTAGKVIYHPLRIDILSKLLAFIDESTGSVEREH
HELFADALPFASEVVLFSKVASEAWFLATYLSSDNINEILFQHLRKTECY
KLVRYLLSQSLIHTSLYDLGELYGVSYSHFRRLCSYALGGKVKTELCGWR
VARAVLEIIEGNSDMTTIAHKYGYSSSSHFSAEVKSRLGKTPRELCKKL
>Z1789 putative envelope protein encoded within prophage CP-933N
MVVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRALFLMHYGKVKI
FDINHSIVSQYLEIQHKLTRTHLTDVPLYLSLEPNNPALAEALITSQRFS
GDTTDMFLMMACLSLFESDERILLFLSGCLSSISAKVRAIIQTDISASWT
LGAIALRLHMSESLLKIKLKNEGHMFSRLLLEERMRVAVNMLCSRHGYGQ
AVAEKCGYSSWSYFISVFHRYYGFPPDRYVSRQGLDY
>Z3126 putative repressor protein of prophage CP-933U
MMESLGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALS
KLAQALGTTESYLLYGVSSPELSFVQSTSGTKIPYLSWGEAISFLILKGE
KTMGNVDRITTFFDVEEGDFAVSMPDDTMHNPSGSPSIPVGATVILRPGE
SYKNGSIVAVIVPDPLKNEPSMTIKKLVIDGKLVYLSPLNPRYQSS
>Z3966 orf, hypothetical protein
MTELTQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGELTRITGL
SASATSQHLARMRDEGLINSQRDAQRILYSIKNEAVNAIIATLKNVYCP
>Z2808 putative DEOR-type transcriptional regulator
MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLEDEGFLT
RTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAAD
SSSTVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTL
SLQGRITKEIISRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQA
TEVALLVDHSKFDRKAFVQLADFSHINYIITDKSPGAEWIAFCKDNNIQL
VW
>Z4184 
MQVFSSDVYFTVGTNALLASQKEYYSDLVALVDLGHSFVVIDEHQHRNLK
PNTEPVNILLSNNFIWINKNITLSDLTHFLVSNLHTQNVYSTQEPLTHDE
IDILRLCVSYSLKQIAIIKGIDYKTVSYHKIRALNQLNIKGTVELFIALC
EWDKHYFKLQSCVRES
>Z2059 unknown protein encoded by prophage CP-933O
MSVIYSSAINSLVVINTVLSGCWLFRQELLVCHVNRKREKDMLKQQDMTE
TARVVFNELSVTDPATVGEIAQNTYLSRERCQLILTQLVMAGLADYQFGC
YRRLQS
>Z1444 putative serine/threonine kinase encoded by bacteriophage BP-933W
MLTPYKRADVEFEWISDLEEQGCFSKVYLAHDRHLAHDLVIKEIEKKENT
NHDDYFNEARLLYKHAHPNIVQVQYAAQCESNIYIAMPFYHNGSLNQLMK
KNNLTSREIIRYSIQFLSGLYHIHSKGLMHFDIKPNNIMISNRNEAMLSD
FGLSQLVNEESRAAPEFGYHFHVPPEYFSLSTNDYNFTYDIYQAGLTIYR
MCVGHDNFERERSAFSTIEQLRESIINGCYPLKEYPPHIHKKLITIVNKC
IHVDPNERYQSVLDVLNDLSAISDGVLDWRLQMTKPTNGTCEWQKKSGDA
ILSIVFDAENSSTTGFRLYDDGRKRRATNLTISSGCTPTKLYRLLKDN
>Z2521 putative DEOR-type transcriptional regulator
MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKLSYLRRA
HGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNAL
LARTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPL
TRQCIQQVHFSKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVL
TDSSKFGAVHSYSIGPVERFNRVITDSKIRASDLMHLEHSKLTVHVVDI
>Z2045 similar to DicA, regulator of DicB encoded by prophage CP-933O
MKNETFGARLLYRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRL
FALSQALQCSPTWLLFGDEDKQPGEPIPDNQPVNLTEDQKELLQLFDALP
ESEQKALLSEMRARVENFNKLFEELLKARKRSANK
>Z4832 orf; hypothetical protein
MDDLTIEILTDDADYDLQRFDCGEEALNLFLTTHLVRQHRNKILRAYILC
RNTPERQVLGYYTLCGSCFERAALPSKSKQKKIPYKNIPSVTLGRLAIDR
SLQGQGWGATLVAHAMNVVWSASLAVGIHGLFVEALNEKAHTFYKSLGFI
PLVGENENALFFPTKSIELLFTQSD
>Z0321 putative AraC-type regulatory protein encoded in prophage CP-933H
MATTCSVILILESFDVYFGKESVFLERGSSVLVDSSSRDFFLTYPERVIV
ADFGAEFISRYLKANNLRDISDCREYPSYLKINFADFSLIKGLISWANHC
AEYIEIFDESIAFTCLSAFSSEKQFGVFLFGCLKSTGAKVKTIIHTDLSA
PWRLKDISSRLYLSESLLKRKLKEEGVSFSKIILDERMQMAEYLLSTRCY
PISKVAKVCGYASVSYFTYVFRRYFGVSPSQYSQRSSESKILTHQGI
>Z2048 unknown protein encoded by prophage CP-933O
MSIDALRWAKKVKTGSSSSKSVLTWLADMCGADLCAYPSVSALAEVTELN
KKTVQDSLRHLMEIGLIVDTGERKGRTKQIVVYRLIGVEESVAEPEYTQK
RESLKVGKIGAVNKNSTENGYVSAQNRPKNRTLSCMENNQRHPNFPSKTP
KNGSRNPKEPKDLNPTHNARESAPTSEQEVLSLQAAPPVFLYGLSEPIGK
FPMSDSWYPSRDFRRRAALWGMALPETEFTPAELAAFRDYWAAEGKVFTQ
IQWEQKFARHVNHVRAQVKPVSKGVNHAAAPGGTASRAVQEIRAAREQWE
RENGFISDGNGLEAVGTHGGGLFEPLDPEERGRTFEALDCTDWRDD
>Z0371 putative LysR-like transcriptional regulator
MTCIGYHQWSNIYHSVKLRFTMMKIEPSILPSLAWFALIVRAGSFSRAVS
EMGITLAALSQNLKSLEERLNTKLIYRTTRNISLTEEGQRLYEVLVSALG
QIDDALKDVGDTQLEPTGLLRINSSRVAARMLVEPHIGEFLTRYPKTKIE
LIMDDGLSNIIADGCDVGIRLEQGLDEHMTAVPVSPLIKLVTVASPDYLK
EHGIPETPQELSNHNCLRLRHKSSGALSAWEFSKVVGGNEEFEIEVSGKY
ISNDDESMIRMALNGTGIIQHLDFAIAEHINAGKLQPILEDWAVSFPGFY
IYVSSRVRMPSKVRAFIDFMVEKRVKLEN
>Z3798 orf, hypothetical protein
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLR
KNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQG
GDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRT
RTQDAIDVKLRA
>Z5888 
MKMTLRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASL
DAIEVLANALSVEPWRLLVSDSSEDSDPELLVPYAADGSCFHPGLASTRD
GSFGVGDKTAQKRFGTFSEALEYLRSMETAKWRRPNPSGNWGIVSAVRWD
KLRK
>Z1333 similar to DicA, regulator of DicB; encoded within cryptic prophage CP-933M
MSALEVSMYRISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASS
LDKLVEVSGHPLHWFLLPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEE
DQEKMLQEIKDKKKSMEETIARWLAAQKSRRA
>Z1531 
MIYIINDEVRFNSSSNKLTSLLTSEEVILTYPAGKCLKLLLDNAYSVVSH
NQFFEKVWSDSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRK
GFKINEEISITVLDNNHNENESVESEENGTHTENINKNHIAKGIFTTKNT
LLIVCFFAAWGIVYISSYFFDMAFQSKSHTIKKIDAFSNYAQHPTQEGCS
YFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYIYIATNDSMSGFYAFTC
SQMLNSESPNNCNSLYYKAE
>Z1503 unknown protein encoded by bacteriophage BP-933W
MTSQRIPVFNGTIANETTLLVNARDLHTFLGVGKRFASWITERIEEYGFV
ENQDYIAISQKREIGYGRGKKDYHLTLDTAKETAMVERNEKGRQIRRYFI
ECEKKLRNMQSAQAEPQQQFTDEEIILLCYMQLWMEKAQDLSKHLYPIMK
ELNSSYTNKLYDIAFETIYMVTKNRDVLLREAARLDQSSFVVQRARPMLK
SLRARQFEF
>Z1447 putative repressor protein CI of bacteriophage BP-933W
MVQNEKVRKEFAQRLAQACKEAGLDEHGRGMAIARALSLSSKGVSKWFNA
ESLPRQEKMNALAKFLNVDVVWLQHGTSLNGANDEDTLSFVGKLKKGLVR
VVGEAILGVDGAIEMTEERDGWLKIYSDDPDAFGLRVKGDSMWPRIKSGE
YVLIEPNTKVFPGDEVFVRTVEGHNMIKVLGYDRDGEYQFTSINQDHRPI
TLPYHQVAKVEYVAGILKQSRHLDDIEAREWLKSS
>Z2209 putative ARAC-type regulatory protein
MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPYERHFKE
IGFNENTIKKYLQCTNIQTVTMPVPAKFLRASNVPTGLLNEMIAYLNSEE
RNHHNFSELLLFSCLSIFATCKGFITLLTNGVLSVSGKVRNIVNMKLAHP
WKLKDICDCLYISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSV
NKIAEQCGYASTSYFIYAFRKHFGNSPKRVSKEYRCQRHTGMNTGNTMNA
LAI
>Z1932 orf; hypothetical protein
MKEGRRMDKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMIS
KVERGTSSPSATILSRLANALNITLSKLFAELEMQQNSLVLLADQQQHWI
DEETGITRWSL
>Z4874 putative regulator
MRAMKSLSKSSQIPLYQQVVEWIRESIYTGDLVEDDRIPSEYQIMDMLDV
SRGTVKKAVAQLVKEGVLIQVQGKGTFVKKENVAYPLGEGLLSFAESLES
QKIHFTTEVITSRIESANRYVAEKLRITPGQDILYLERLRSIGDEKAMLI
ENRINIELCPGIAEIDFNQHNLFPTIESLSQRKIRYSESRYAARLIGNER
GHFLDISEDAPVLHLEQLVFFSRGLPIEFGNVWLKGNKYYLGTVLQRREV
S
>Z2400 partial putative represssor protein encoded within prophage CP-933R
MVHEDKARKEFASRLALACENAGYEQHGRQAEIARRMKLTPKAVSKWFNG
ETIPRREKLRELATXIGTTPTYLLGEDTEETWTDTFLSGVKSKTKNHH
>Z2969 unknown protein encoded by prophage CP-933T
MKNDIGRRLREERERLGLSQVAMSDIGGVKKLTQLRYEKGDSFPDAAYLA
ALSRFGLDVQYVVLGIHSPETYNDDEQELITRFRAASLDVKNAVIGALKG
AISEKETQPSGRELNISGGNNRIAGRDYNETKGR
>Z1059 
MSDKLQMMLEDAKELNALGLMSDSEVDAIAVMVKAREVSARIAKVKSMTG
EEIKAIRTRYGMSQSVLAHTMGMSKESVSKWERNEIKPSGPALRILNTLA
IKGPEVFAK
>Z1818 putative antirepressor protein encoded by prophage CP-933N
MKSIAKAQNDFTIFKFGDSEIRVINKCGEPWFVAKDVCDALALTNSRKAL
TALDDDEKGVTLSYTLGGEQNLSIVSESGMYTLVLRCRDAVNKGSVPHKF
RKWVTAEVLPSIRKHGEYVKGKKTTVEERTPLRDAVNMLVGKKGLRNDDA
YNMVHQRFGIDSIDELSIEQIPLAVEYIHRVVLEGEFIGKQEKSTNELSA
KEANSLVWLWDYANRSQALFRELYPALKQIQSNYSGRCYDYGHEFSYVIG
MARDVLINHTRDVDINEPDGPTNLSAWMRLKNKELPPSPHHY
>Z4045 orf; hypothetical protein
MICPRCADEQIEVMAKSPVKDVWTVYQCQHCLYTWRDTEPLRRTSREHYP
EAFRMTQKDIDDAPMVPSIPPLLAEGKR
>Z2164 
MSKMMTTLQRPLVIALAYDGLCTFEFGVAVEIFGLPRPELGDNWYRFAVA
AVEPGALQATGGIHVVADGGLELLPNADMIIIPGWRGIDAKVPEMLCQSL
REAHQRGTRLVSICSGVFVLAAAGLLHQRKATTHWRYTEQLQHRYPSISV
SDNVLYQDEGQVMTSAGSAAGIDLCLHIVRKDFGHEIANNVARRLVIQPH
RQGDQPQNLTRPMASPRESQTLGALFDFLQQNLAQTHTVSSLAERVNMSP
RTFLRRFEALTGMTPARWLLNERLIRVQDYLQNSVFNIEKIAELTGFGNS
ALLRHHFHQRFLLSPSQYRKNSRSPSQ
>Z2851 putative enzyme
MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTG
KTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL
KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVS
VAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHL
FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK
EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS
VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGSAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR
>Z2090 putative repressor protein encoded within prophage CP-933O
MNKQTISERITQRMHALNLKGKDLVNATGASKGSVSQWMNGGGAPSSRYI
SSLAKILKVNENWLLNGGELNTGDSLDLSLPPIKTVPLLSLQQAASWSDY
MKNSSITSCVQLVGEIPANTFAVVLESDSMSTSGGGVSIPNGSTVFVDPD
RIVQPGNIVLALPKGTTTPVIRKLEIEGPDILLVPTNPRYPSIMLDDLSC
ILGVCFKIQQDI
>Z1772 unknown protein encoded by prophage CP-933N
MKIKHEHIRMAMNAWAYPDGEKVPAAEIARTYFELGMTFPELYDDSHPEA
LARNTQKIFRWLDKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYY
REIVERRDRLVKDVDDFVAAAIAWGTLTNSGGQPGNAVVVH
>Z3354 putative exclusion protein ren of prophage CP-933V
MTGKEAIIHYLGTHNSFCAPDVAALTGATVTSINQAAAKMARAGLLVIEG
KVWRTVYYRFATREEREGKXSTNLIFKECRQSAAMKRVLAVYGVKR
>Z3506 putative regulator
MLESSKVPALTRAIDILNLIARIGPCNAATIIDTLGIPKSTAYLLLNELR
RQRFLSLDHQENFCLWTKLVELSGHALSKMDLRELARPRLTQLMDTTGLL
CHLGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPA
TVQQSIIEGLVWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVR
CVAAPVFNANNELTAAISVVGTRLQINEEYRDYLAGKAIACARDISRLLG
WKSPFDLQAS
>Z0463 putative response regulator; hexosephosphate transport
MIRVVLVDDHVVVRSGFAQLLSLEDDLEVIGQYSSAAQAWSALIRDDVNV
AVIDIAMPDENGLSLLKRLRAQKPQFRAIILSIYDAPTFVQSALDAGASG
YLTKRCGPEELVQAVRSVGLGGHYLCADAIRALRGGGQPAQALEILTPRE
REVFELLVKGDSVKEIAFKLELSHKTVHVHRANVLGKLNCHSTIELVHFA
LDHHLLAGH
>Z1124 putative prophage regulatory protein
MPDQSGHCRTPSRILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPV
RLGSGSVGWRSSAIDEWLTLHTVPARSAVKGVNDEVRHTLSSDMTMSR
>Z0885 putative LysR-like transcriptional regulator
MRGKIPKTELLVTFEVVARHESYTRAAEELALTQSAVFRQVSALEEFLRT
PLFSHSKKRIFLNDTGKYYLGIVKETLNKLERDTNTIMTWQPTVQVIELA
VNPTFSTHWLIPNLHEFTKLHPDIIVNIHSLANNGDFLNREYDAVIMREN
FCAPWAEVEYLFEEEILPVCSGSLLAMSDQKLSVAELLTELPLLHQSTRI
TGWEEWFALSGVSSPLVNNGPRFDLLSMLIAAVRSNLGVALLPRFAIQHD
LDSGDMVIPCDVPIRTGNRFIMTWQEEKSDSPHLQQFREWLLAKSVVPQE
M
>Z3358 putative repressor protein CI of prophage CP-933V
MKTMHEIIGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSA
DDALVLGAALGVSPAKIMFGEDSDAVFRQYEYPLFSSVQAGPFXEVGXYT
ASDAKAWVPTTTKASEKAFWLEVKGHSMTAPQGVRPSFPEGMLILVDPAE
PVESGDFCVASANGDSEATFKKYEKDAGVSYLVPLNPAYRTLDCDHSCRI
IGKVVKAQWPEETFG
>Z5000 putative regulatory protein
MLELSMTLPIKVQNGGLFISRGVGRHSARRLESWEIIFVEKGRLTIQEEE
RIFLVDAGESLLLWPNRQHVGVEDFPADLKFYWLHFEVKAPDNDPRWLTH
LSVPQQTKVVDPQALVALFRQFLSEQEKHQRTPALEFIVLLILQQLTRDA
RLDEQADGAGTTLAWKAQKLIRTQYHRPLSTALLARELYCNADYLGRVYR
RVFHLTLTEAIHRQRVREAEKLLISEARSLTEVAALCGFNDVGYFRQIFR
KHTGLTPAAWKRRYSKEHINS
>Z1627 
MLTTTSHDSVFLRADNSLIDMNYITSFTGMTDKWFYKLISEGHFPKPIKL
GRSSRWYKSEVEQWK
>Z1188 unknown
MLTTTSHDSVFLRADNSLIDMNYITSFTGMTDKWFYKLISEGHFPKPIKL
GRSSRWYKSEVEQWK
>Z3646 putative 2-component transcriptional regulator
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAI
FLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYIL
KPYQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVT
PINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFC
VNLNKIREIEPWFNNTYILRLKDLDFEVPVSRSKVKEFRQLMHL
>Z2104 putative ARAC-type regulatory protein of CP-933O
MAVVCSVIMVCSPINIFLEKDTLSLKPGSVVLATKCIRELFLMHYGKVKI
VDISZSVVSQYLESQHKLTRTRLTDIPLYLLLEPNNPALAAALITSQGFS
GEVTDMFLMMACLSLFETDERMSLFLSGCLSSISAKVRAIIQTDISASWT
LGAIALQLHMSESLLKTKLKNEGGMFSRLLLEERMRVAVNMLCSRYGYGQ
AVAEKCGYSSRSYFISVFHRYYGFPPDRYVSRQGLDY
>Z2874 putative regulator
MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYR
FLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREI
SRLTKETIHLGALDEBSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKV
LLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNE
EQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAAR
KISAQMGYHDYPF
>Z2666 orf, hypothetical protein
MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFR
SKEAFGVAMLERHYATYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQH
GTISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRDSHCL
TFCGEPLQQAQVLYALWLGANLQAKISRNSEPLENALAHVKTIIATPAV
>Z1563 putative prophage regulatory protein
MPDQSGHCRTPSRILRMPELSQLLGISRSTIYEKMNPLSKYYDATFPRPV
RLGSGSVGWRSSAIDEWLTLHTVPARSAVKGVNDEVRHTLSSDMTMSR
>Z0579 acrR, acrAB operon repressor
MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVTRGAIYW
HFKDKSDLFSEIWELSESNIGELELEYQAKFPSDPLSVLREILIHVLEST
VTEERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIE
AKMLPADLMTRRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLE
MYLLCPTLRNPATNE
>Z5718 adiY, putative ARAC-type regulatory protein
MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNIIDVSSL
NNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRV
AAQHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDS
VYQIIESDIHKDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMR
YAVNELMMDGKNISQVSQSCGYNSTSYFISVFKDFYGMTPLHYVSQHRER
TVA
>Z4483 agaR, putative DEOR-type transcriptional regulator of aga operon
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRN
DLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAA
VELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGV
ELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHN
EDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIP
ADSLEGLRKAGVEVILVGE
>Z0073 araC, transcriptional regulator for ara operon
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLT
IRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRP
RAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSEL
LAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASV
AQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVG
RNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>Z6004 arcA, negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA)
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL
VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS
LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLED
>Z4596 argR, repressor of arg regulon; cer-mediated site specific recombination
MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQSKVSRML
TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHT
SPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILE
LFDQEL
>Z4903 arsR, transcriptional repressor of chromosomal ars operon
MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRH
LALLRESGLLLDRKQGKWVHYRLSPHIPSWAAKIIEQAWRCEQEKVQVIV
RNLARQNCSVDSKNTCS
>Z4022 ascG, ascBF operon repressor
MMTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNL
LARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG
KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNR
RLRKNSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSVERLA
GYKDALAQHGIALNEKLIANGKWTPASGAEGVETLLERGAKFSALVASND
DMAIGAMKALHKRGVAVPEQVSVIGFDDIAIAPYIVPALSSVKIPVTEMI
QEIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIALSR
>Z5244 asnC, regulator for asnA, asnC and gidA
MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAG
IITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYY
TTGHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTI
KP
>Z3248 baeR, transcriptional response regulatory protein (sensor BaeS)
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYV
RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL
EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEXRF
QASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRT
IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRIV
>Z5715 basR, transcriptional regulatory protein, member of 2-component regulatory system,
MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEAGHYSLVVL
DLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLV
KPFALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELIL
TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK
VGKARIRTVRGFGYMLVANEEN
>Z0400 betI, probably transcriptional repressor of bet genes
MPKLGMQSIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYF
RDKNGLLEATMRDITSQLRDAVLNRLHALPQGSAEQRLQAIVGGNFDETQ
VSSAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPRHQA
QEAGYGLAALIDGLWLRAALSGKPLDKPLAHSLTRHFITQHLPTD
>Z5967 bglJ, 2-component transcriptional regulator
MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQESFQDA
MSRISFAAVIFSFSAMRSERREGLSCLTELAIKFPRTRRLVIADDDIEAR
LIGSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQS
RTLSPTEREILRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSD
AGLLEAADILLCMRHCETSNVLHPY
>Z5544 birA, biotin-[acetylCoA carboxylase] holoenzyme synthetase and biotin operon repressor
MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV
FTVPGKGYSLPEPIQLLNAEQILGQLDGGSVTVLPVIDSTNQYLLDRIGE
LKSGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLS
LVIGIVMAEVLRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQ
IVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAAL
ELFEQEGLAPYLSRWEKLDNFINRPVKLIIGDKEIFGISRGIDKQGALLL
EQDGIIKPWMGGEISLRSAEK
>Z5736 cadC, transcriptional activator of cad operon
MQQPVVRVGEWLVTPSINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSR
DELIDNVWKRSIVTNHVVTQSISELRKSLKDNDEDSPVYIATVPKRGYKL
MVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSPSHSLNIQNTATPPEQSP
VKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRILLNPRDID
INMVNKSCNSWSSPYQLSYAIGVGDLVATSLNTFSTFMVHDKINYNIDEP
SSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTMLDKRYVITNGNQL
AIQNDLLESLSKALNQPWPQRMQETLQQILPHRGALLTNFYQAHDYLLHG
DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAAL
NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW
LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPY
VVPYLDKFLASE
>Z3146 cbl, transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM
MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFV
RRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATT
HTQARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLHNGEADIGIASE
RLSNDPQLVAFPWFRWHHSLLVPHDHPLTQITPLTLESIAKWPLITYRQG
ITGRSRIDDAFARKGLLADIILSAQDSDVIKTYVALGLGIGLVAEQSSGE
QEEKNLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI
KRQVMENSEEEIDYQI
>Z2765 celD, negative transcriptional regulator of cel operon
MMQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLV
LTGRYFQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRF
FEQHYLPLLPYCFVASQVYRTNNAFLTYVETVISSLNFRETGLEEFVEMV
TFYVINRLRHYREEQVIDDVPQWLKSTVEKMHDKEQFSESALENMVTLSA
KSQEYLTRATQRYYGKTPMQIINEIRINFAKKQLEMTNYSVTDIAFEAGY
SSPSLFIKTFKKLTSFTPKSYRKKLTEFNQ
>Z0765 citB, sequence similarity to Shigella regulator
MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK
PGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCG
VFDYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGE
PKDELPTGIDPLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEY
CASRHLIIAEIVHGKVGRPQRIYHSG
>Z1761 cobB, putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase
MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVLVLTGAG
ISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQ
QPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGEL
LKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEI
YMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEF
AEKYYGPASQVVPEFVEKLLKGL
>Z5457 cpxR, transcriptional regulator in 2-component system
MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDSIDLLLL
DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK
PFNDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASF
DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPDRKDGHPWFKTLRGRGYLMVSAS
>Z6001 creB, catabolic regulation response regulator
MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDV
MILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADD
YVAKPFSPREVCARVRTLLRRVKKFSTPSPVIRIGHFELNEPAAQISWFD
TPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIVWEDAQDTYDRTVDTHIK
TLRAKLRAINPDLSPINTHRGMGYSLRSL
>Z1673 csgD, putative 2-component transcriptional regulator for 2nd curli operon
MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI
SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIEN
WPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNS
TESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAV
KNRTQAVSWANDNLRR
>Z3804 csiE, orf, hypothetical protein
MLMGDLQMMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVD
DDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRR
GFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKR
FESRDIHFLCLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGR
HWQRRALQPVPPDEPLFMALLFSMLRVPDPLRDAHQRDRQLRQSIKRLVN
HFRELGNVRFYDEQGLCDQLYTHLAQALNRSLFAIGIDNTLPEEFARLYP
RLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQENDLHEKQIIL
LTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAPY
TMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA
>Z4981 cspA, cold shock protein 7.4, transcriptional activator of hns
MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQK
VSFTIESGAKGPAAGNVTSL
>Z2868 cspC, cold shock protein
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV
EFEIQDGQKGPAAVNVTAI
>Z1117 cspD, cold shock protein
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQF
DVHQGPKGNHASVIVPVEVEAAVA
>Z0769 cspE, cold shock protein
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRV
EFEITNGAKGPSAANVIAL
>Z1406 cspG, homolog of Salmonella cold shock protein
MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNENQK
VEFSIEQGQRGPAAANVVTX
>Z1405 cspH, cold shock-like protein
MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLR
VEFCRVNGLRGPTAANVYLS
>Z0434 cynR, cyn operon positive regulator
MLSRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDR
SGRTIHLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPT
FTSYFIGPLMADFYARYPGITLQLQEMSQEKIEDLLCRDELDVGIAFAPV
HLPELEAIPLLTESLALVVAQHHPLAACEQVALSRLHDEKLVLLSAEFAT
REQIDHYCEKAGLHPQVVIEANSISAVLELIRRTSLSTLLPAAIATQHDG
LKAIPLAPPLLERTAVLLRRKNSWQTAAAKAFLHMALEECADVGENESR
>Z2535 cysB, positive transcriptional regulator for cysteine regulon
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFS
RSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATT
HTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATE
ALHLYEDLVMLPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFG
FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP
VADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV
DAAVALRSNEEIEVMFKDIKLPEK
>Z5481 cytR, regulator for deo operon, udp, cdd, tsx, nupC, and nupG
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAARE
VGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLV
LIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMV
MANEFAPELELPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCH
YRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLLDLPQPPTAVF
CHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR
YEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIRGSTRALP
>Z2417 dbpA, ATP-dependent RNA helicase
MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTG
SGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPN
TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTL
VMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR
DPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT
KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV
AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA
QRANIISDMLQIKLNWQTPPANSSIVTLEAEMATLCIDGGKKAKMRPGDV
LGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
CRVRLLK
>Z4523 deaD, inducible ATP-independent RNA helicase
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQ
AECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPT
RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTP
GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT
ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN
EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI
GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR
LEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ
GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV
GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFSGERR
EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
>Z1067 deoR, transcriptional repressor for deo operon, tsx, nupG
METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNNHSAPVV
LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDC
GTTTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNA
IFKPIDFQQTLNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMA
QKHVLVVDHSKFGKVRPARMGDLKRFDIVVSDCCPEDEYVKYAQTQRIKL
MY
>Z4428 ebgR, regulator of ebg operon
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTS
SARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLAIEL
TNCYEHSGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSG
YDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYG
RLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVL
RAIHERGLNIPQDISLISVDDIPTARFTFPPLSTVRIHSEMMGSQGVNLV
YEKARDGRALPLLVFVPSKLKLRGTTR
>Z3985 emrR, regulator of plasmid mcrB operon (microcin B17 synthesis)
MDSSFTPIEQMLKFRASRHEDFPYQEILLXRLCMHMQSKLLENRNKMLKA
QGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGW
IERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQ
LEQITRKLLSRLDQMEQDGVVLEAMS
>Z4624 envR, putative transcriptional regulator
MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVTRGAIYW
HFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYI
AKIPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQ
GCVANNLDLDVVMIIIDGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRM
FMPDENITKLIHQTNELSVM
>Z0696 envY, envelope protein; thermoregulation of porin biosynthesis
MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNVIELSTL
NHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRL
AANHSKQQPSKPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDS
VCRIIQSDIQHYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMR
YAVQMLLMDNKNITQVAQLCGYSSTSYFISVFKAFYGLTPLNYLAKQRQK
VMW
>Z3631 evgA, putative positive transcription regulator (sensor EvgS)
MNAXIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVI
IDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFV
SKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEIS
VMRYILDGKDNNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQR
NKIG
>Z4448 exuR, negative regulator of exu regulon, exuT, uxaAC, and uxuB
MPGAHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVS
RTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPF
ELLQARQLIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQ
FHIQVALATQNSALAAIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDH
DQILKALIRKDPHAAKLAMWQHLENTKIMLFNETSDDFEFNADRYLFAEN
PVVHLDTATSGSK
>Z1950 fadR, negative regulator for fad regulon, and positive activator of fabA
MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDN
LLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFR
GLAFASGNPIYGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALC
SEGAHDQVYETVRRYGHESGEIWHRMQKNLPGDLAIQGR
>Z4040 fhlA, formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons
MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIV
LWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEE
FCETWPQLAAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEF
NRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSR
LDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQHPAH
EQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTL
CLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAY
QEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQ
SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL
FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQ
EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLP
PLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRE
LENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQEGEDEYQLIV
RVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSALI
>Z0693 fimZ, fimbrial Z protein; probable signal transducer
MYQSTIYRPNGKLSAPMRLVTMKPTSVIIMDTHPIIRMSIEVLLQKNSEL
QIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVK
VLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPS
ETLNYIKSNKCSTNSSTVTVLSNREVTILRYLVSGLSNKEIADKLLLSNK
TVSAHKSNIYGKLGLHSIVELIDYAKLYELI
>Z4621 fis, site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>Z1709 flgM, anti-FliA (anti-sigma) factor; also known as RflB protein
MSIDRTSPLKPVSTVQPRETTDAPVTNTRAAKTTASTSTSVTLSDAQAKL
MQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN
>Z3012 fliA, flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons
MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGI
GLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREV
AQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWR
EEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLY
YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
>Z0090 fruR, transcriptional repressor of fru operon and others
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN
AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE
DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA
LDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG
FRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALL
QGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV
LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
>Z5440 frvR, putative frv operon regulatory protein
MLNERQLKIVDLLEQQPRTPGELAQQTGVSGRTILRDIDYLNFTLNGKAR
ISASGSAGYQLEIFERRSFFQLLQKHDNDDRLLALLLLNTFTPRAQLASA
LNLPETWVAERLPRLKQRYERTCCLASRPGLGHFIDETEEKRVILLANLL
RKDPFLIPLAGVTRDNLQHLSTACDNQHRWPLMQGDYLSSLILAIYALRN
QLTDEWPQYPGDEIKQIVEHNGLFLGDNAVRTLTGLIEKQHQQAQVISAD
HVLGLLQRVPGLASLNIIDTQLVENITGHLLRCLAAPVWIAEHRQSSMNN
LKAAWPAAFDMSLHFITLLREQLDIPLFDSDLIGLYFACALERHQNERQP
IILLSDQNAIATINQLAIERDVLHCRVIIARSLSELVAIREEIEPLLIIN
NSHYLLDDAVNNYITVKNIITAAGIEQIKHFLATAFIRQQPERFFSAPGS
FHYSNVRGESWQHITRQICAQLVAQHHITADEAQRIIAREGEGENLIVNR
LAIPHCWSEQERRFRGFFITLAQPVEVNNEVINHVLIACAAADARHELKI
FSYLASVLCQHPAEVIAGLTGYEAFMELLHKG
>Z4122 fucR, positive regulator of the fuc operon
MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQTQGKILR
NHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALD
ASSTCWYLARQLPDINIQVFTNSHPICHELGKRERIQLISSGGTLERKYG
CYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRA
AQSLLLIDKSKFNRSGEARIGHLDEVTHIISDERQVATSLVTG
>Z4155 galR, repressor of galETK operon
MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNAN
ARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHN
EQKERQAIEQLIRHRCAALVVHAKMIPDADLASLLKQMPGMVLINRILPG
FENRCIALDDRYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYD
ALAESGIAANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACYNDSMAA
GAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA
ELALALADNRPLPEITNVFSPTLVRRHSVSTPSLEASHHATSD
>Z3407 galS, mgl repressor, galactose operon inducer
MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNAN
AQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHE
AEKERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPG
YTHRCVCLDNLSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMS
ALKEQDIIPPESWIGTGTPDMPGGEAAMVELLGRNLQLTAVFAYNDNMAA
GALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT
ELALQGAAGNIDPRASHCFMPTLVRRHSVATRQNAAAITNSTNQAM
>Z3253 gatR, galactitol utilization operon repressor
MLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMHG
SIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISGAMVTAANKVIA
VLDSSKFNRRGFNQVLPIEKIDIIITDDAVSDVDKLALQKTRVKLITV
>Z4125 gcvA, positive regulator of gcv operon
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGL
KLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSL
LPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRG
NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDW
QTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEA
GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFR
FRYEQ
>Z4781 glpR, repressor of the glp operon
MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELAEQNLIL
RHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIG
TTPEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGG
IIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSR
HVMLVVDHSKFGRNAMVNMGSISMVDAVYTDTPPPVSVMQVLTDHHIQLE
LC
>Z4806 gntR, regulator of gluconate (gnt) operon
MADRVGVTKMTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSN
ATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQE
RLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
GFDNFEAARQMTTAIIARGHRHIAYLGARLDERTIIKQKGYEQAMLDAGL
VPYSVMVEQSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQR
LGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRERMGSIGAERLLARIR
GESVTPKMLDLGFTLSPGGSI
>Z4543 greA, transcription elongation factor: cleaves 3' nucleotide of paused mRNA
MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQ
GFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTY
RIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKV
EYL
>Z4761 greB, transcription elongation factor and transcript cleavage
MRIIKQTKGINEMKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAAS
LGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFG
AWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAV
VNTPAGEASWYVNAIEYVKP
>Z4013 gutM, glucitol operon activator
MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGRSSGRFK
PRVVVAIALDDQQRIADTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIF
PHDPLSQNALSLALKLKRG
>Z3808 hcaR, transcriptional activator of hca cluster
MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVGVPLLVR
DKRKVALTAAGECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSA
EVNLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVY
SPEIDYLELFDEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPAYSGS
LAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVTLIPGYMNNFNT
GQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA
>Z3751 hyfR, putative 2-component regulator, interaction with sigma 54
MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPLPPPFSP
VQLIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMA
ELRFIRTHGSRFTPQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKD
RDHHRVLVDITNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKN
EKFSLWCSDLSASHCACLPRNMPGDSVLLTQTLQTRQPTLTHRADDLFLW
QRDPLLHLLASNGCESSLLIPLTFGNHTPGALLLAHTSTTLFSEENCQLL
QHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLLSNLGVGDIIYQ
SQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLV
KINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD
LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF
RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTE
ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNE
DSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGM
KRTTLLSRNAGVWGSRFARCCNLLLQEYA
>Z4036 hypB, guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3
MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIKAPEFTP
SQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFA
ACKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI
RATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNXVCPA
SFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDV
EKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQRCA
>Z4253 iciA, replication initiation inhibitor, binds to 13-mers at oriC
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPL
LVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNAD
SLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQA
LPSCLVDKLGALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDM
HQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELA
SGELIDLTPGLFQRRMLYWHRFAPESRMMRKVTDALLDYGHKVLRQD
>Z5609 iclR, repressor of aceBA operon
MKMISTIQKKETVMVAPIPAKRGRKPAVATAPATGQVQSLTRGLKLLEWI
AESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAH
AFMVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQ
VQCTHLMRMSAPIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYT
HATLVSPVHLKEDLAQTRKRGYSFDDEEHALGLRCLAACIFDEHREPFAA
ISISGPISRITDDRVTEFGAMVIKAAKEVTLAYGGMR
>Z5284 ilvY, positive regulator for ilvC
MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVR
DNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVT
AAYSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPE
TLPGAVAFSMLENLAVVLIAPALPCPVRNQVSVEKPDWSTVPFIMADQGP
VRRRIELWFRRNKISNPMIYATVGGHEAMVSMVALGCGVALLPEVVLENS
PEPVRNRVMILDRSDEKTPFELGVCAQKKRLHEPLIEAFWRILPNHK
>Z0841 kdpE, regulator of kdp operon (transcriptional effector)
MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATRKPDLII
LDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLS
KPFGIGELQARLRVALRRHSATAAPDPLVKFSDVTVDLAARVIHRGEEEV
HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR
QKLEQDPARPSHFITETGIGYRFML
>Z0441 lacI, transcriptional repressor of the lac operon
MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPN
RVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVE
RSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACANVPALFLDV
SDQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAG
WHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMA
LGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTS
VDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPXTQTASPRALADSLMQLA
XQVSRLESGQ
>Z0086 leuO, probable transcriptional activator for leuABCD operon
MTVELSMPEVQTDHPETAEFSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQ
LVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVM
FKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNH
PTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQGMAMM
SVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLPLKLNSRTCYLSWHEA
AGRDKGHQWMEEQLVSICKR
>Z5642 lexA, regulator for SOS(lexA) regulon
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQV
DPSLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGD
WL
>Z5031 lldR, transcriptional regulator
MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLRE
ALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFD
ILEARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRF
HLAIAEASHNIVLLQTIRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQ
AVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHARITRLPGEHN
EHSREKNA
>Z3549 lrhA, NADH dehydrogenase transcriptional regulator, LysR family
MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLE
QLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGV
LTIGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVD
LMVTTHRPSAFKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRD
MVLATLNKADIPWRLAYVASTLPAVRAAVKAGLGVTARPVEMMSPDLRVL
SGVDGLPPLPDTEYLLCYDPSSNNELAQVIYQAMESYHNPWQYSPISAPE
GDDSLLIERDIE
>Z1234 lrp, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR
RLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKL
EEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM
EEVKQSNRLVIKTR
>Z4157 lysR, positive regulator for lys
MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKL
FERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIAC
LPVFSQSFLPQLLQPFLVRYPDVSLNIVPQESPLLEEWLSAQRHDLGLTE
TLHTPAGTERXELLSLDELCVLPPGHPLAVKKVLTPDDFQGENYISLSRT
DSYRQLLDQLFTEHQVKRRMIVETHSAASVCAMVRAGVGVSVVNPLTALD
YAASGLVVRRFSIAVPFTVSLIRPLHRPSSALVQAFSEHLQAGLPKLVTS
LDAILSSATTA
>Z2625 malI, repressor of malX and Y genes
MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAAIEELGF
VRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLL
HGGKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFA
SRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAER
VGGYCATLLKFGLPFHSDWVLECTSSQKQAAEAITALLRHNPTISAVVCY
NETIAMGAWFGLLKAGRQSGESGVDRYFEQQVSLAAFTDATPTTLDDIPV
TWASTPARELGTTLADRMMQKITHEETHSRNLIIPARLIAAK
>Z4774 malT, positive regulator of mal regulon
MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALITSPAGYGKTTLIS
QWAAGKNDIGWYSLDEGDNQQERFASYLIAAVQQATNGHCAICETMAQKR
QYASLTSLFAQLFIELAEWHSPLYLVIDDYHLITNPVIHESMRFFIRHQP
ENLTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFTHQEAKQFFDCRLS
SPIEAAESSRICDDVSGWATALQLIALSARQNTHSAHKSARRLAGINASH
LSDYLVDEVLDNVDLATRHFLLKSAILRSMNDALITRVTGEENGQMRLEE
IERQGLFLQRMDDTGEWFCYHPLFGNFLRQRCQWELAAELPEIHRAAAES
WMAQGFPSEAIHHALAAGDALMLRDILLNHAWSLFNHSELSLLEESLKAL
PWDSLLENPQLVLLQAWLMQSQHRYGEVNTLLARAEHEIKDIREGTMHAE
FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC
KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET
QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL
SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS
NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL
LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV
LLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQHRAQRILR
EINQHHRHKFAHFDENFVERLLNHPEVPELIRTSPLTQREWQVLGLIYSG
YSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQAAVQHAQKLLKMMGYG
V
>Z2170 marA, multiple antibiotic resistance; transcriptional activator of defense systems
MTMSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK
ETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKN
YFDVPPHKYRMTNMQGESRFLHPLNHYNS
>Z2171 marR, multiple antibiotic resistance protein; repressor of mar operon
MVNQKKDRLLNEYLSPLDITAAQFKVLCSIRCAACITPVELKKVLSVDLG
ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDL
HQELTKNLTADEVATLEHLLKKVLP
>Z5720 melR, regulator of melibiose operon
MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWHGQVEVN
VPFDGDVEYLINNEKVNINQGHITLFWACIPHQLTDTGTCQSMAIFNLPM
HLFLSWPLDKDLINHVTHGMVIKSLATQQLSPFEVRRWQQELNSPNEQIR
QLAIDEIGLMLKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFI
AENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRA
LLSDTDKSILDIALTAGFRSSXRFYSTFGKYVGMSPQQYRKLSQQRRQTF
PG
>Z5493 metJ, repressor of all met genes but metF
MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINP
ETWEY
>Z5349 metR, regulator for metE and metH
MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRLGFRLFV
RKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSC
IQWLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPR
SGLHYSPMFDYEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLD
VWRHFLQPAGVSPSLKSVDNTLLLIQMVAARMGIAALPHWVVESFERQGL
VVTKTLGEGLWSRLYAAVRDGEQRQPVTEAFIRSARNHACDHLPFVKSAE
RPTYDAPTVRPGSPARL
>Z1754 mfd, transcription-repair coupling factor; mutation frequency decline
MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEISQFTDQMVMNLADWETLPXDSFSPHQDIISSRLSTLYQLPT
MQRGVLIVPVNTLMQRVCPHSFLHGHALVMEKGQRLSRDALRTQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ
RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTL
ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN
ANLGFQKLPDLAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGE
LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL
GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE
AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMXQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVA
EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF
GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL
IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA
>Z0444 mhpR, transcriptional regulator for mhp operon
MHNVVLTIEMSINMQNNEQTEYKTVRGLTRGLMLLNMLNKLDGGASVGLL
AELSGLHRTTVRRLLETLQEEGYVRRSPSDDSFRLTIKVRQLSEGFRDEQ
WISALAAPLLGDLLREVVWPTDVSTLDVDAMVVRETTHRFSRLSFHRAMV
GRRLPLLKTASGLTWLAFCPEQERKELIEMLASRPGDDYQLAREPLKLEA
ILARARKEGYGQNYRGWDQEEKIASIAVPLRSEQRVIGCLNLVYMASAMT
IEQAAEKHLPALQRVAKQIEEGVESQAILVAGRRSGVHLR
>Z2587 mlc, putative NAGC-like transcriptional regulator
MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI
VREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLA
LRDLSSKLVVEESQELALKDDSPLLDRIISHIDQFFIRHQKKLERLTSIA
ITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWT
MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV
DPYGKRCYCGNHGCLETIASVDSILELAQLRLNQSMSSMLHGQPLTVDSL
CQAALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI
LFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKDAMYNGSLL
IRLLQG
>Z5025 mtlR, repressor for mtl
MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRSFLITAV
ELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLG
VINRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPP
PQFEPADSSLYAMQIQRYQQAVRSTMVLSLTELISRISLKKAFQK
>Z3147 nac, nitrogen assimilation control protein
MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIR
TKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPG
TAASSITMPLLQAVRAEFPEVVIYLHENSGAVLNEKLINHQLDMAVIYEH
SPVAGVSSQALLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAVRL
RVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVAVLPESAARSLCGAV
NGWMSRITTPSMSLSLSLNLPARANLSPQAQAVKELLMSVISSPVMEKRQ
WQLVS
>Z0823 nagC, transcriptional repressor of nag (N-acetylglucosamine) operon
MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVT
KITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATI
TLFDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAI
SVILPGLVDPDSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLA
LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV
EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI
CKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKV
LLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKRAMLNGILL
QHLLEN
>Z1996 narL, pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes
MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAES
LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALK
RGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTE
RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL
KSRVEAAVWVHQERIF
>Z3450 narP, nitrate/nitrite response regulator (sensor NarQ)
MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR
LDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALID
AGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMFGAEEDP
FSVLTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS
RVAATILFLQQRGAQ
>Z0019 nhaR, transcriptional activator of nhaA
MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQG
KLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVG
VADVLSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIIS
DCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRR
SMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAYD
FYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV
R
>Z4551 nlp, regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu
MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSRPWPKGE
MIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK
>Z5670 nrfB, formate-dependent nitrite reductase; a penta-haeme cytochrome c
MNMSVLRSLLTAGVLASGLLWSLNGITATPAAQASDDRYEVTQQRNPDAA
CLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMR
FNEPMYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQ
DTMQTLSDKGRIKICVDCHSDQRTNPNFNPASVPLLKEQP
>Z4530 nusA, transcription pausing; L factor
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQID
RKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESV
TFDRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNI
SLDLGNNAEAVILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRS
KPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE
DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQA
EAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDE
PTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA
RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA
>Z0518 nusB, transcription termination; L factor
MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE
LLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPY
KVAINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK
>Z5555 nusG, component in transcription antitermination
MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEVV
EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP
APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEE
VDYEKSRLKVSVSIFGRATPVELDFSQVEKA
>Z4760 ompR, response regulator (sensor, EnvZ) affecting transcription of ompC and ompF: outer membrane protein synthesis
MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH
LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD
DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTR
EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS
IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>Z5519 oxyR, activator, hydrogen peroxide-inducible genes
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER
TSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPT
VGPYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVK
ESEAFIEVPLFDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCL
RDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPPERK
RDGVVYLPCIKPEPRRTIGLVYRPGSPLRSRYEQLAEAIRARMDGHFDKV
LKQAV
>Z0123 pdhR, transcriptional regulator for pyruvate dehydrogenase complex
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPS
LREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDL
LETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAV
LQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSS
HRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRERSLRRLE
QRKN
>Z5705 phnF, putative transcriptional regulator
MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPAEQQLAARFEVNRH
TLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSH
PTSEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYF
ADLTLWPTLQRFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLE
IPNMSPLLCVRTLNHRDGESSPAEYSVSLTRADMIEFTMEH
>Z5696 phnO, putative regulator, phn operon
MGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVM
PQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQ
SHFRFTKVL
>Z0497 phoB, positive response regulator for pho regulon, sensor is PhoR (or CreC)
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLI
LLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGE
EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR
RLRKALEPGGHDRMVQTVRGTGYRFSTRF
>Z1859 phoP, transcriptional regulatory protein
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIV
DLGLPDEDGLSLICRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVT
KPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKL
TAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKK
IQAQYPQEVITTVRGQGYLFELR
>Z0426 prpR, regulator for prp operon
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAV
TYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKA
GKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKA
NGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHN
THDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGT
GKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE
GAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTR
VGGHQPVPVDVRVISATHCNLEEDMRQGQFRRDLFYRLSILRLQLPPLRE
RVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLVHYDWPGNIRE
LRNMMERLALFLSVEPTPDLTPQFLQLLLPELARESAKIPAPRLLTPQQA
LEKFNGDKTAAANYLGISRTTFWRRLKS
>Z2482 pspA, phage shock protein, putative inner membrane protein
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARA
LAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDL
IKSLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSR
DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAEL
KADDAISEQLAQLKAKMKQDNQ
>Z2479 pspC, phage shock protein: activates phage shock-protein expression
MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLSIFFGLA
LFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLRE
MERYVTSDTFTLRSRFRQL
>Z2484 pspF, psp operon transcriptional activator
MANFIMAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELI
ASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR
FERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV
CATNADLPAMVNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAI
QMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHGTSDY
PLDDIIIDPFKRRPPEDAIAVSETTSLPTLPLDLREFQMQQEKELLQLSL
QQGKYNQKRAAELLGLTYHQFRALLKKHQI
>Z2681 purR, transcriptional repressor for pur regulon, glyA, glnB, prsA, speA
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV
ARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNN
LEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEA
KADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGF
MKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIM
AMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET
AFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>Z4602 qseA, quorum sensing Escherichia coli regulator A
MERLKRMSVFAKVXEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLN
RSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSS
TMAQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQD
SSLFSRRLGAMPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEF
ELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGAGIAYVPLMWVINEINR
GELEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINSLTDYFVEVGKLFQ
EMHGRGKEK
>Z4377 qseB, quorum sensing Escherichia coli regulator B
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVIL
DLTLPGMDGRDILREWREKGQREPVLILTARDALEERVXGLRLGADDYLC
KPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTL
KPKEFALLELLMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRK
LGSDFIRTVHGIGYTLGEK
>Z5254 rbsR, regulator for rbs operon
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSAL
ARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGD
EQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPF
DGDSDLIQDNSLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYR
AAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMA
VGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA
IDVLIHRITQPTLQQQRLQLTPILMERGSA
>Z3041 rcsA, positive regulator for ctr capsule biosynthesis, positive transcription factor
MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSQRPSV
VFINEDCFIHDASNSQRIKLIINQHPNTLFIVFMAIANVHFDEYLLVRKN
LLISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWM
AGQGTIQISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTN
GIFVNMR
>Z3476 rcsB, positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)
MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDA
HVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLD
LDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKR
LSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDXA
LLNYLSSVTLSPADKD
>Z5078 recG, DNA helicase, resolution of Holliday junctions, branch migration
MGYYAGCRVSAMTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLH
LPLRYEDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGS
GILTMRFFNFSAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDL
STPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ
GMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLAL
RAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVP
MMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRN
WFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFN
GLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTA
YADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWV
CTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASF
KQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGA
VASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTR
QTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETER
YSNA
>Z4099 relA, (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHP
DASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG
KSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVV
IKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED
YCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVY
GRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG
VAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ
VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD
RDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGD
IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE
RIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASR
SDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>Z5362 rfaH, transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPL
FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK
PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI
KHSVKNTEFRKL
>Z5450 rhaR, positive regulator for rhaRS operon
MAFCNNANLLNVFVRHIANNQFRSLAEVATVAHQLKLLKDDFFASDQQAV
AVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHA
DDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWRLGS
MGMAQARQVIGQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLP
PTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMT
INQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMT
PSQWRHLNSQKD
>Z5449 rhaS, positive regulator for rhaBAD operon
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVF
NGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQ
LLPQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILF
MQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLS
LRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYHCGFSD
SNHFSTLFRREFNWSPRDIRQGRDGFLQ
>Z5290 rhlB, putative ATP-dependent RNA helicase
MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRALIMAPTRELAVQI
HADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT
LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GANGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLT
RPRTGNGPRRTGAPRNRRRSG
>Z1017 rhlE, putative ATP-dependent RNA helicase
MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQV
EILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEK
LLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRG
QGGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRK
PAAAQ
>Z5293 rho, transcription termination factor Rho; polarity suppressor
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIF
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK
IRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERG
NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP
DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA
EXRVFPAIDYNRSGTRKEELLTXQEELQKMWILRKIIHPMGEIDAMEFLI
NKLAMTKTNDDFFEMMKRS
>Z2514 rnb, RNase II, mRNA degradation
MFQDNPLLAQLKQQLHSQTPRXEGVVKATEKGFGFLEVDAQKSYFIPPPQ
MKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIV
PDHPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQY
ITFGDDHFVPWWVTLARHNLEKEAPDGVATEMLDEGLVRKDLTALDFVTI
DSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAF
TNYLPGFNIPMLPRELSDDLCSLRANEVRPVLACRMTLSADGTIEDNIEF
FAATIESKAKLVYDQVSDWLENTGDWQPESEAIAEQVRLLAQICQRRGEW
RHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEAMIAANICA
ARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR
KYGDMINHRLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLY
ARFLKDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDE
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPVA
>Z3848 rnc, RNase III, ds RNA
MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSY
VIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGE
LKSGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPG
DKQKDPKTRLQEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEP
VVGTGSSRRKAEQAAAEQALKKLELE
>Z0754 rnk, regulator of nucleoside diphosphate kinase
MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMCSPEEMP
HDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLG
LRVGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL
>Z5999 rob, right origin-binding protein
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI
GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTP
ALYRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLE
QISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTT
ALAQDQADGYVLTGHPVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPM
LNLTRRKGQDIERYYPAEDAKAGDRPINLRCELLIPIRR
>Z4665 rpoA, RNA polymerase, alpha subunit
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL
TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGR
GYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK
LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
>Z5560 rpoB, RNA polymerase, beta subunit
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLE
AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKL
RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR
RRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGET
ASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISET
LRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV
GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQV
DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDI
YNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM
RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI
TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE
MQXKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLEL
GLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP
LGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYD
LGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE
>Z5561 rpoC, RNA polymerase, beta prime subunit
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE
RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG
MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQ
LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKV
RITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKK
HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN
LQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLK
PGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI
QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG
AVLAKGDGEQVAGGETVANWDPHTMPVITEVSGFVRFTDMIDGQTITRQT
DELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF
LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP
KEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND
KHIEVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGA
TYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGYAYHQDRMRRRAAGEAPAAPQVTAEDASASLAELLNAG
LGGSDNE
>Z4420 rpoD, RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND
MGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRM
YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDR
VEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED
GDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEIL
KLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKK
NFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE
TGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKI
AKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAG
LTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDD
>Z3855 rpoE, RNA polymerase, sigma-E factor; heat shock and oxidative stress
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVV
QEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA
IEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE
LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR
>Z4835 rpoH, RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures
MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYHGDLEAA
KTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN
QDEVEMVARELGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLY
LQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNK
STLQELADRYGVSAERVRQLEKNAMKKLRAAIEA
>Z4565 rpoN, RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQI
DTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGT
SGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDD
TGYLTVPLEDILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLL
IQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAV
NLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQIN
QHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQ
QQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
IMVARRTVAKYRESLSIPPSNQRKQLV
>Z4049 rpoS, RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins
MSQNTLKVHDLNEDAEFDDNRVEVFDEKALVEEEPSDNDLAEEELLSQGA
TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR
LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI
RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE
QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT
QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE
RVRQIQVEGLRRLREILQTQGLNIEALFRE
>Z5075 rpoZ, RNA polymerase, omega subunit
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA
LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
>Z2609 rstA, response transcriptional regulatory protein (RstB sensor)
MNVMNTIVFVEDDAEVGSLIAAYLAKHDIQVTVEPRGDQAEETILRENPD
LVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACD
YILKTTPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTID
PINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDG
LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE
>Z4780 rtcR, putative 2-component regulator
MRKTVAFGFVXTVLDYAGRGSQRWSKWRPSLCICQQESLVIDRLELLHDA
RSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE
FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG
AGEVTIIDLDLSLYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI
EKVAIKSRAPILLNGPTGAGKSFLARRIFELKQARHQFSGAFVEVNCATL
RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA
MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVADGKFREDLYAR
INXWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAF
ATSPQATWRGNFRELSASVTRMATFASSGRITLDVVEDEINRLRYNWQES
RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ
GKASVNDADRLRKYLARFGLTWEAVQDQHSSS
>Z3004 sdiA, transcriptional regulator of ftsQAZ gene cluster
MQDTDFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPV
PFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLF
NEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDEL
QLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEI
AMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGLI
>Z2657 slyA, transcriptional regulator for cryptic hemolysin
MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQS
QIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEP
LISEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG
>Z4481 sohA, putative protease; htrA suppressor protein
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGG
QVFMCRLGDEQEDHTMNAFLRFLDTDIQNNPQKTRPFNIQQGKKLVAGMD
VNIDDEIGDDE
>Z5662 soxR, redox-sensing activator of soxS
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYK
RDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWRE
ELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLE
DEQN
>Z5661 soxS, regulation of superoxide response regulon
MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL
GDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTP
SDYRHRL
>Z5076 spoT, (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK
EQRFHSIMDIYAFRVIVNDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL
NEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPP
ATQSHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDKETAQEFITEIKVEMFNHQGALANLTAAINTT
TSNIQSLNTEEKDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN
RN
>Z4014 srlR, regulator for gut (srl), glucitol operon
MTPQAQLFAKNLVILEHAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKK
ELIAEAAVGFIHDGDSIILDAGSTVLQMVPLLSRFNNITVMTNSLHIVNA
LSELDNEQTILMPGGTFRKKSASFHGQLAENAFEHFTFDKLFMGTDGIDL
NAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNVVCSLESVDKL
ITDADIDPAFRQALEEKGIDVIITGESNE
>Z3859 srmB, ATP-dependent RNA helicase
MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLIXDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATR
SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN
VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS
LVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA
KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE
>Z4470 tdcA, transcriptional activator of tdc operon
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFG
VELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVS
FGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFA
IGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLP
QTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDM
TSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSY
NGCRRRQLIEVG
>Z1164 terW, unknown associated with putative tellurite resistance
MQLNTRQARIFKLANLLGTGKPVSAADIITSLECSEPTLTRALKELRESY
SAEIKYSKAGHSYHLVNPGQLDKKTLRRMNEALAQNAELKTGESTGKVVL
DKDKKTAVSLSLRMRILRKIDRLAALSDSTRSEAVEKLALHSVDELIKEY
SAKKS
>Z1603 terW_2, unknown associated with putative tellurite resistance
MQLNTRQARIFKLANLLGTGKPVSAADIITSLECSEPTLTRALKELRESY
SAEIKYSKAGHSYHLVNPGQLDKKTLRRMNEALAQNAELKTGESTGKVVL
DKDKKTAVSLSLRMRILRKIDRLAALSDSTRSEAVEKLALHSVDELIKEY
SAKKS
>Z1412 torR, response transcriptional regulator for torA (sensor TorS)
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLI
LLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYV
TKPLELRELVVRVKNLLWRIDLARQAQPYTQDNCYRFAGYCLNVSRHTLE
RDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVD
VLIRRLRHKLSADLLVTQHGEGYFLAADVC
>Z5851 treR, repressor of treA,B,C
MQNRLTIKDIARLSGVGKSTVSRVLNNXSGVSQRTRERVEAVMNQHGFSP
SRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES
QFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAK
GFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLA
FCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLCATDTLALGASKY
LQEQRIDTLQLASVGNTPLMKFLHPEIVTVDPGYAEAGRQAACQLIAQVT
ERSEPQQIIIPANLS
>Z5995 trpR, regulator for trp operon and aroH; trp aporepressor
MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREA
LGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWL
EEVLLKSD
>Z5065 ttk, putative transcriptional regulator
MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQRITTAK
LAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTA
RLRLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQL
RQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDF
DARWPLIAAQLQ
>Z2454 tyrR, transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport
MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFAELEFES
FSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKS
KVDMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHV
VINGQNFLMEITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDV
SAFSQIVAVSPKMKHVVEQAQKLAMLSAPLLITGDTGTGKDLFAYACHQA
SPRXSKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI
GEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVXVRVICATXKNLVELVQKG
MFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLA
ADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANK
LREYGLSQKKNEE
>Z5159 uhpA, response regulator, positive activator of uhpT transcription (sensor, uhpB)
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQV
CICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLS
KRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLA
QGMAVKEIAAELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW
>Z2623 uidR, repressor for uid operon
MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYH
HFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFG
QRALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDI
NTAMTSRLLLDLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS
>Z1946 umuD, SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC
MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSA
TYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQ
LRPTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR
>Z1148 ureG, putative urease accessory protein G
MNIIKQPLRVGVGGPVGSGKTALLEALCKSMRDTWQLAVVTNDIYTREDQ
RILTEAGALEAERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLEL
IFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVI
NKTDLAPYVGASLEVMERDTLRMRGERPWGFTNLKSGEGLQNIIAFIEEQ
GMLGK
>Z1587 ureG_2, putative urease accessory protein G
MNIIKQPLRVGVGGPVGSGKTALLEALCKSMRDTWQLAVVTNDIYTREDQ
RILTEAGALEAERIVGVETGGCPHTAIREDASMNLAAVEALSEKFGNLEL
IFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDFLVI
NKTDLAPYVGASLEVMERDTLRMRGERPWGFTNLKSGEGLQNIIAFIEEQ
GMLGK
>Z3002 uvrY, putative 2-component transcriptional regulator
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDV
VLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAG
YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASL
SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL
THLAIRHGLCNAETLSSQ
>Z5922 uxuR, regulator for uxu operon
MKSATSAQRPYQXVGAXIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVV
REALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQ
ARQLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQ
FHLAIAEATHNSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGD
HKQILAALIKKDARAAKLAMWQHLENVKQRLLEFSNVDDIYFDGYLFDSW
PLDKVDA
>Z5786 vacB, putative enzyme
MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTKREKPAS
RDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVK
GTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGR
REARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGA
RMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYI
WPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE
KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEV
LSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKV
WHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF
IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIH
DKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQ
TMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLMLHRAIKYLL
AKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKC
DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQ
VGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGK
TAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARK
AKKPSAKTQKIAAATKAKRAAKKKVAE
>Z5054 waaP, putative LPS biosynthesis enzyme
MVWMVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAGKSY
FLKWHRGTTLKEIIKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAF
GEKGMNPLTRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVA
TMVHDMHAAGINHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRV
PRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFAAPLKDILKQEQGLLS
QAEAKATKIRERTIRKSL
>Z4994 xylR, putative regulator of xyl operon
MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARID
KIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIA
TDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEE
KYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQ
VCEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLL
HRLLDKEEMPLQRILVPPVRVIERRSTDYRSLTDPAVIQAMHYIRNHACK
GIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLLISTT
LSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
>Z0174 yaeG, orf, hypothetical protein
MHNGGLMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI
GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGL
TGEPENLRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEE
NTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTT
PERNNLVAIVSLTEMVVLKPALNSFGRWDVEDHRKRVEQLITRMKEYGQL
RFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVL
LDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKAL
FIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER
>Z0201 yaeO, orf, hypothetical protein
MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLVSRKN
VEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES
>Z0230 yafC, putative transcriptional regulator LYSR-type
MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLL
NRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAA
TPVVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLT
DSSLRARPLFNSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLN
TWPVACSDGQLHEVKYGLSSNSGETLKQLCLSGNGIACLSDYMIDREIAR
GELVELMADKVLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEHVKTAPGGA
VREA
>Z0295 yafP, orf, hypothetical protein
MNNIQIRNYQPGDFQQLCAIFIRAVMMTASQHYSPQQIAAWAQIDESRWK
EKLAKSQVRVAVINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPW
IKSESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFSMRYKPQH
>Z0470 yaiV, orf, hypothetical protein
MPVKDLTGITAKDAQMLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIF
SSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMKNDIPYK
LISEGNCTGYHLPAKQTITLIEQNQLWRDAFYWLAWQNRILELRDVQLIG
HNSYEQIRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEVLAALR
KGGYIEMNKGKLVAINRLPSEY
>Z0493 yajF, 
MNHSMIISTALSLNLAGMITNCRRPCIANPVVRLYAIDIEKNKESTVRIG
IDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQAT
GQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLAN
DANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGE
WGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFATDYRRLSGHA
LKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGM
SNVDRLYQTVPQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>Z0514 ybaD, orf, hypothetical protein
MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPR
VVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGE
REVPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED
>Z0555 ybaO, putative transcriptional regulator
MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIG
KVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMA
GEYDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLP
IE
>Z0636 ybbI, putative transcriptional regulator
MTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEESGELVNLFNDPQR
HSADVKRRTLEKVAEIERHIEELQSMRNQLLALANACPGDDSADCPIIEN
LSGCCHHRAG
>Z0658 ybbS, putative transcriptional regulator LYSR-type
MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENTGVALFF
RTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINN
LLYNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVT
GTEALANTFSLDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIE
DSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGFLPKSLCQSMI
DNQQLVSRVIPTMRPPSPLSLAWRKFGSGKAVEDIVTLFTQRRPEISGFL
EIFGNPRS
>Z0660 ybbU, putative regulator
MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVSDISLNL
DLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLS
VAGPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLP
LHASGAGKALLYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQAR
ELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRLTEDRFVSQ
GELVRDTARDISTALGLKAHP
>Z0744 ybdM, orf, hypothetical protein
MGDTMQQRLTQDLTQFLASLPEDDRINAINEIRMAIHQVSPFREEPVDCV
LWVKNSQLMPNDYNPNNVAPPEKKLLKKSIEIDGFTQPIVVTHTDKNALE
IVDGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGR
HQITAMSEIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADR
QYSRAWTVK
>Z0747 ybdO, putative transcriptional regulator LYSR-type
MTNLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRA
QFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNF
IIHGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKAD
LVITQMPVISRSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQ
LISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYE
LYNSHRDFLNLKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNECF
>Z0774 ybeF, 
MLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLE
SILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNP
PISDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLS
LEDDRETIDNAAHVLLLPEGQNFSGLRQRIQEMFPDRQISFTSYNILTIA
ALVANSDMLAIIPSRFYNLFSRCWPLEKLPFPSLNEEQIDFSIHYNKFSL
RDPILHGVIDVIRNAF
>Z0939 ybhD, putative transcriptional regulator LYSR-type
MQLKFLTASHPKSSLPFPGVIMKHELSSMKAFVILAESSSFNNAAKLLNI
TQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDE
TLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQ
GTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAK
KQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTS
LGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVL
SPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>Z1016 ybiH, putative transcriptional regulator
MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQNIA
AITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIR
ELILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHS
HLTRLIAAWTGCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFD
EEKTELINQTVTCHIDLILQGLSQRSL
>Z1512 ycdC, putative tet operon regulator
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGV
SKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRL
KLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKSLIDEKSALIAGWVK
SGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVEN
VQRIIIEGIRPR
>Z1750 ycfQ, 
MGSGLVNGGDYFYNNLSFTVTRYNGIMATDSTQCVKKSRGRPKVFDRDAA
LDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRY
IDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTGKDTPAGCFMINNCT
TLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFL
NCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK
>Z1760 ycfX, putative NAGC-like transcriptional regulator
MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVCELVAEA
DQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDV
RLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSY
ITGEFGHMRLPVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQH
YYHQPLPAPEIIALYDQGDEQARAHVERYLDLLAVCLGNILTIVDPDLVV
IGGGLSNFPAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLH
LTD
>Z2489 ycjC, orf, hypothetical protein
MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAIS
TLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHN
GNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIILTINGQDYHL
VAGQSYAINTGIPHSFSNTSAGICRIISAHTPTTF
>Z2461 ycjW, putative LACI-type transcriptional regulator
MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEELQYQPNK
LARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVIL
QTSHTPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVI
GKVEGQYAHVYSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVD
RVNGYKQSLEDHNIAVRDEWIVDGGYTHETALQAARQLLSQSPLPEAVFA
TDSLKLMSIYRAAAEKNIAIPQQLAVVGYSNETLSFILTPAPGGIDVPTQ
ELGRQSCELLFRLIAGKPSPQNITVATHMTLK
>Z2439 ycjZ, putative transcriptional regulator LYSR-type
MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEERLGLRL
LTRTTRSVVPTEAGEHLLSVLGPMLHDIDSALASLSDLQNRPSGTIRITT
VEHAAKTILLPAMRTFLKSHPEIDIQLIIDYGLTDVVSERFDAGVRLGGE
MDKDMIAIRIGPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTS
GTANRWRLIRGGREVRVRMEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVE
RAIKEKKLIRVLDKFTPDLPGYHLYYPHRRHAGSAFSLFIDRLKYKGAV
>Z2423 ydaK, putative transcriptional regulator LYSR-type
MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQ
LFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIG
MGASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTIN
TYYQGPYDHEFTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTP
HGSYYKQLSELLDDQAQTPQVGVVCETFSACISLVAKSDFLSILPEEMGC
DPLHGQGLVMLPVSEILPKAAYYLIQRRDSRQTPLTASLITQFRRECGYL
QS
>Z2285 ydcN, orf, hypothetical protein
MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVA
TLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVIISLFPYDPQLCFE
HFSIQMAPGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVR
FAADVTHIYRNGGEQTVHFHSLIHYPRS
>Z2193 ydeW, putative transcriptional regulator, sorC family
MTINDSVISEQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTRLKVSRL
LEKGHQSGIIRVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGG
RLGIGAAHMLMSLLQPQQMLAIGFGEATMNTLQRLSGFISSQQIRLVTLS
GGVGSYMTGIGQLNAACSVNIIPAPLRASSADIARTLKNENCVKDVLLAA
QAADVAIVGIGAVSQQDDATIIRSGYISQGEQLMIGRKGAVGDILGYFFD
AKGDVVTDIKIHNELIGLPLSALKTIPVRVGVAGGENKAEAIAAAMKGGY
INALVTDQDTAAAILRS
>Z2157 ydfH, orf, hypothetical protein
MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVRFNVSRQ
PVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARR
AASMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQ
LAWDTIENLKATVDRVRYMSFDHVSPPEMLLRXHLDIFSALQKRDGDAVE
RAMTQHLQEISESVRQIRXENSDWFSEE
>Z2682 ydhB, putative transcriptional regulator LYSR-type
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFE
RRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDN
IVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATR
AIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVRED
TSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLN
EGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLR
EPEETPATGD
>Z2831 yeaM, putative AraC-type regulatory protein
MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGA
ITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPT
TCYTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQL
HLPVSSHPKIRAMVEMMAKEPVEWGALGQWAGFFAMSERNLARLIVKETG
LSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQ
TPGRYIAGLTTVSPQSAKPDPWQ
>Z2842 yeaT, putative transcriptional regulator LYSR-type
MKHKTRIMNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALL
EQTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVP
QGMLRIISSFGFGRQVVAPALSALAKAYPQLELRFDVEDRLVDLVNEGVD
LDIRIGDDIAPNLIARKLATNYRILCASPEFIAQHGAPKHLTDLSALPCL
VIKERDHPFGVWQLRNKEGHHAIKVTGPLSSNHGEIVHQWCLDGQGIALR
SWWDVSENIASGHLVQVLPEYYQPANVWAVYVSRLATSAKVRITVEFLRQ
YFAEHYPNFSLEHA
>Z2905 yebK, orf, hypothetical protein
MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAALALEANVSEPT
VNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFE
SAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKF
FRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARE
NDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVL
ATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR
>Z3022 yedL, orf, hypothetical protein
MFTIKTDDLTHPAVQALVAYHISGMLQQSPPESSHALDVQKLRNPTVTFW
SVWEGEQLAGIGALKLLDDKHGELKSMRTAPNYLRRGVASLILRHILQVA
HDRCLHRLSLETGTQAGFTACHQLYLKHGFVDCEPFADYQLDPHSRFLSL
TLCEDNELL
>Z3061 yedW, putative 2-component transcriptional regulator
MNQAVSMTYDLWHIIFMKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGR
DGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVD
DRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNSTLEISGLRMDS
VSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSD
TNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK
>Z3177 yeeY, putative transcriptional regulator LYSR-type
MHCKGACMKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLES
DLNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWEN
ELVIGVDDTFPFSLLAPLIEAFYQHHNVTRLKFINGVLGGSWDALTQGRA
DIIVGAMHEPPSSSEFGFSRLGDLEQVFAVAPHHPLAQEEEPLNRRIIKR
YRAIVVGDTAQAGASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPR
YLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQTAGLASGWWRDEILANS
AIAGVYAKSDDGKSAI
>Z3264 yegW, putative transcriptional regulator
MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHGNILPGE
RDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARG
FSQQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVD
EEAVSIEESWVPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPD
AEFQSHIQLDSKIPVLVIKQVALDQQQRPIEYSISHCRSDLYVFVCEE
>Z3302 yehT, orf, hypothetical protein
MEGRGMIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHK
LRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHA
FDYLLKPIDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRI
YLLQMKDVAFVSSRMSGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQY
LVNLAHLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>Z3376 yehV, putative transcriptional regulator
MLKPQRTDGGHRLFNDADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQ
NGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLTTHLFIPLRRRL
QYQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIQDTTRL
WLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQL
TSWQEQGHDIFPLGI
>Z3414 yeiE, putative transcriptional regulator LYSR-type
MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQLGVQLF
DRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIG
NYILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHS
TEIISEPWLEDELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREI
VDYLLLSHLPKFEMAMELGNSEAIKHAVRHGLGISCLSRRVIEDQLQAGT
LSEVAVPLPRLMRTLWRIHHRQKHLSNALRRFLDYCDPANVPR
>Z3417 yeiI, putative kinase
MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRKGRIKGK
GYILTEQEYCVVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIA
HNLALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTY
LAIANRDDETVLAINDTHLLEQLSPQLLNGSRDLLRHAGVVLADCNLTAE
ALEWVFTLAGEIPVFVDTVSEFKAGKIKHWLAHIHTLKPTLPELEILWGQ
AITSDADRNAAVNALHQQGVQQLFVYLPDESVYCSEKDGEQFLLTAPAHT
TVDSFGADDGFMAGLVYSFLEGNNFRDSARFAMACAAISRASGSLNNPTL
SADNALSLVPMV
>Z3443 yejH, putative ATP-dependent helicase
MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG
RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV
ARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAA
TRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIEDFKAQR
FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDED
GADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALL
RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>Z3663 yfeD, orf, hypothetical protein
MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLIL
VDTQVCEFIQNTPAFHNTPMLLEAEEPLAEYAPGIRTPAYRQIISAIDNM
THSEQEKVAQFLSREGIRNFLARLDIDESA
>Z3702 yfeG, putative ARAC-type regulatory protein
MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHALTITAW
QQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGI
PATRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVIT
RQANFLHNPDRVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENL
HQPAVRKVLGDNLLMAMGAMLEEAQPMVTAESISHQSYRRLLSRAREYVL
ENMSEPVTVLDLCNQLHVSRRTLQNAFHAILGIGPNAWLKRIRLNAVRRE
LISPWSQSTTVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMREWG
>Z3674 yfeR_1, putative transcriptional regulator LYSR-type
MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENHTGVRLL
DRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAAS
QTISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVID
PGPVGDLQCEVILSEPFFLLCHRDSALAAEDYVP
>Z3673 yfeR_2, putative transcriptional regulator LYSR-type
MLQDYASGSRPLIDAALARNGIQANIVQEIGHPATLFPMVAAGIGISILP
ALALPLPEGSPLVVKRITPVVERQLMLVRRKNRSLSTAAEALWDVVRDQG
NTLMAGREGDPLYQI
>Z3692 yfeT, orf, hypothetical protein
MLYLTKIRNAESEFTENEQKIADFLRANVSELKSVSSRKMAKQLGISQSS
IVKFAQKLGAQGFTELRMALIGEYSASREKTNATAQHLHSSITSDDSLEV
IARKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVG
CDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVL
CAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTA
QNSVTDLLFVGLVQLNDVESLKMIQRSSELTQRLK
>Z3841 yfhH, orf, hypothetical protein
MEYKIHSRVSHIACCRHYFIARKDMNGLLRIRQRYQGLAQSDKKLADYLL
LQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALAS
QPESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECV
TMLRSARRIILTGIGASGLVAQNFAWKLMKIGFNAAAVRDMHALLATVQA
SSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPNALQQRASH
CLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
LVKKLV
>Z3860 yfiE, putative transcriptional regulator LYSR-type
MFLHSKFDIFDRFGVMDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFH
IQQLEQEFSVQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKE
SDPDGELRVVSGETLLSYRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDAL
LNDEADVGVFYRVGNDDALNRRELGEQSLVLVASPQIADVDFTEPGRHNA
CSFIINEPQCVFRQIFESTLRQRRITVENTIELLSIESIKRCVAANIGVS
YLPRFAVEKELESGELIELPFGEHSQTITAMCAHHAGKAVSPAMHTFIQC
VEDCFLPG
>Z4017 ygaA, putative 2-component transcriptional regulator
MSSQNDYQSNGRYDNIYSQIDSEAKMSFSVDVLANIAIELQRGIGHQDRF
QRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPR
LEAIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFAGQNLI
GALTLDGMQPDQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGD
AAPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETGTGKELVA
KAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKF
EMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLA
ATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQ
CRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRSGD
EVILEAQHFAFPEVTLPPPEVAAVPVVKQNLREATEAFQRETIRQALAQN
HHNWAACARMLETDVANLHRLAKRLGLKD
>Z3963 ygaE, putative transcriptional regulator
MIRSHTMTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIA
RGGDEWEADVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGS
HYLLQMRERLFDLAARYRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARD
TARASELMRQHLLTPIPIIQQAMAGN
>Z4078 ygcP, putative anti-terminator regulatory protein
MPXLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKI
KNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAE
GFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIR
QPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>Z4173 ygeH, putative invasion protein
MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPPKELGVLIVLLESAGHV
VLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYR
FSGQVFKTKINEDNTSDYSIAIFPFTTSLKTLDPLILNQELVQIISNKKI
DGLYTYPMAATNFCNDHISQNSFLRRFNPDYFVTGRINQNNAVNTLYIEL
TDAKNLFLIASNHLPVDELHNTSQFIIENILQTVHNPQRSVRLTKQDQGY
KNHYLSDEMLAGKKELYEFTPESIYRAMTIFDGLQNKSDIQTLKTECYCL
LAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL
SGQAKVSHILFEQAKIHSTDIASLYYYRALVNFHNEKIEEARICIDKSLQ
LEPRRRKAVVIKECVDMYVPNPLKKNMKLYYKETESGSHRVIIDNILKLK
QLTRICMR
>Z4208 ygeV, putative transcriptional regulator
MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLYRVAGTGAYGK
FLGRQLSGNSRLLCHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLG
TPVILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLE
DQGPGDNISKIFATMIDNMDQGVLVVDDESRVQFVNQTALKTLGVVQNNI
IGKPIRFRPLTFESNFTHGHMQHIVSWDDKSELIIGQLHNIQGRQLFLMA
FHQSHTSFSVANAPDEPHIEQLVGECRVMRQLKRLISRIAPSPSSVMVVG
ESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPEQLLESELFGYVKGAFT
GASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAREILPIGAS
SPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED
IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYL
VNVVPSGEVIDSTLLPPNLLNNGTTEQSDVTEVTEAHLSLDDAGGTALEE
MEKQMIREALSRHNSKKQVADELGIGIATLYRKIKKYELLNT
>Z4274 yggD, putative transcriptional regulator
MATLSEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVDNDEESV
EYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLKE
QDETLGFADDMTWDFISNVNSITCNATLYDALKAMKFADFAVWSEARFSG
MVKTALTLAVTTTLKELTP
>Z4413 ygiP, putative transcriptional regulator LYSR-type
MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQILENTLAT
TLLNRSARGVALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRI
GCSFGFGRSHIAPAITELMRNYPELQVYFELFDRQIDLVQDNXDLDIRIN
DEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSLQELSRHDCLVTKERD
MTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIMLRSEWDVL
PFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRL
GKPDEGYQXM
>Z4435 ygjM, orf, hypothetical protein
MIAIADILHAGEKLTAVAPFLAGIQNEEQYIQALELVDHLLLNDPENPLL
DLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLSDLPE
IGSKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID
>Z4459 yhaJ, putative transcriptional regulator LYSR-type
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELD
VVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLT
IVTEALVPTPAFFPLIDKLAAKANTQLAIITEXLAGAWERLEQGRADIVI
APDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGI
AVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVE
KDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFNGK
>Z4580 yhcI, putative NAGC-like transcriptional regulator
MVQHSDEKGGAMTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPE
ALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLV
KTLGQLTDLPTIAINDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVS
GGKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQG
ELAGADAKTIFMRAGQGDEQAQQLIHRSAHVLARLIADIKATTDCQCVVV
GGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALLAQGE
KL
>Z4584 yhcK, putative FADA-type transcriptional regulator
MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRREFG
EGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSA
DTIIGELSGMAKBFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDL
LAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLI
AARPTVADQALHEHNNVSYQQHIAIVDAIRRHDPDXADRALQSHLNSVSA
TWHAFGQTTNKKK
>Z4598 yhcO, orf, hypothetical protein
MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPLP
LEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH
>Z4662 yhdM, putative transcriptional regulator
MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKF
IRHARQXGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAEL
QSMQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC
>Z4736 yhfR, putative transcriptional regulator
MLLLAGKRPYNPCNSFFISGSIMSATDRYSHQLLYATVRQRLLDDIAQGV
YQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQ
KVENALLTVSGFTDFGVSQGKATKEKVIEQERISAAPFCEKLNIPGNSEV
FHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTR
VVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQNDKPVHVSELF
CRANRITLTIDNKRH
>Z4762 yhgF, orf, hypothetical protein
MPFIARYRKEITGGLDDTQLRNLETRLGYLRELEERRQAILKSISEQGKL
TDDLANAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWSD
PSHTPEVAAAQYIDADKGVADTKAALDGARYILMERFAEDAALLAKVRDY
LWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEG
VLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTW
RIKVLMHLETELMGTVRERAENEAINVFARNLHDLLMAAPAGLRATMGLD
PGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELV
AIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEF
PDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKL
DAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNR
QQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAAT
QQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEF
KTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL
SNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNSRRG
GGNDRPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR
>Z4873 yhhG, orf, hypothetical protein
MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGT
QGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAV
LKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED
>Z4809 yhhY, orf, hypothetical protein
MIRHAETRDYEAIRQIHAQPEVYYNTLQVPHPSDHMWQERLADRPGIKQL
VACIDGDVVGHLTIDVQQRPRRSHVADFGICVDARWKNRGVASALMREMI
EMCDNWLRVDRIELTVFVDNAPAIKVYKKFGFEIEGTGKKYALRNGEYVD
AYFMARVK
>Z4925 yhiE, orf, hypothetical protein
MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVIIDTYHN
HILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLE
ITYGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQ
KFNIMYKLKLRRMSDIVTLGITSYF
>Z4909 yhiF, orf, hypothetical protein
MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVIIDTLMN
NVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVA
LINGSYCSVPEANVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCH
KHNIMMILNLKRINELVRHQHIDYLV
>Z4928 yhiW, putative ARAC-type regulatory protein
MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFCSPDTRR
LDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNE
SGVNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIA
KRWYLRDIAERMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQ
IPLHTIAEKCGYSSTSYFINTFRQYYGVTPHQFAQHSPGTFS
>Z4929 yhiX, putative ARAC-type regulatory protein
MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRVDKCVEN
FVLVSRDTLSLFLPMLKEEALNLHAHKKVSSLLVHHCSRDIPVFQEVAQL
SQNKNLRYAEMLRKRALIFALLSVFLEDDHFIPLLLNVLQPNMRTRVCTV
INNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQ
LIVIHGFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTEYQERSAQGLPNR
DSAASIVAQGNFYGTDCSAEGIRL
>Z4933 yhjB, putative regulator
MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALV
MLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAI
VPRDSTVETFALAVNSAAMGIMFLPGDWRTTPEKDIKDLKSLSARQREIL
TMLAAGESNKEIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS
>Z4934 yhjC, putative transcriptional regulator LYSR-type
MLEKIINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFSRAADFF
ALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNL
NELDGLFQQDATSISGKLRIDIPPGIAKSLLLPHLSEFLYQHPGIELELS
SHDRPVDILHDGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFG
YPQNPDDLTSHAIVRYTPHLGVHPLGFEVASVNGVQWFKSGGMLTVNSSE
NYLAAGLAGLGIIQIPRIAVREALRAGRLIEVLPGYRAEPLSLSLVYPQR
RELSRRVNLFMQWLAGVMKEYLD
>Z4975 yiaC, orf, hypothetical protein
MIREAQRSELPAILELWLESTTWGHPFIKVNYWRECIPLVRDAYLANAKN
WVWEEDGKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRYPHL
MLEVYQKNQPAIDFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL
>Z4980 yiaG, orf, hypothetical protein
MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKGTGLKID
DFARVLGVSVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME
>Z5004 yiaU, putative transcriptional regulator LYSR-type
MTKLQLKYRELKIISVIAASENISHAATVLGIAQANVSKYLADFESKVGL
KVFDRTTRQLMLTLFGTALLPYINDMLDRNEQLNNFIADYKHEKRGRVTI
YAPTGIITYLSKHVIDKIKDIGDITLSLKTCNLERNAFYEGVEFPDDCDV
LISYAPPKDESLVASFITQYAVTAYASQRYLEKHPISRPDELEHHSCILI
DSMMIDDANIWRFNVAGSKEVRDYRVKGNYVCDNTQSALELARNHLGIVF
APDKSVQSDLQDGTLVPCFQHPYEWWLDLVAIFRKREYQPWRVQYVLDEM
LREIRHQLAQSQQLRPEQAAESED
>Z5175 yidL, putative ARAC-type regulatory protein
MSIIRRRDIKMNGKLQTSDVKNETPYNIPLLINENVISSGISLISLWHTY
ADEHYRVIWPRDKKKPLIANSWVAVYTVQGCGKILLKNGEQITLHGNCII
FLKPMDIHSYHCEGLVWEQYWMEFTPTSMMDIPIGQQSVIYNGEIYNQEL
TEVAELITSPEAIKNNLAVAFLTKIIYQWICLMYADGKKDPQRRQIEKLI
ATLHASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDL
ALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFGYAPSAVLKNTDQHP
TDASPHN
>Z5179 yidP, putative transcriptional regulator
MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRKAIDLLV
AWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEI
MPAPPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSL
QHLEGSKFEYIEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRI
TSLSYSESGEFLNYSVMFRNASEYQVEYHLRRLHPDKS
>Z5206 yidZ, putative transcriptional regulator LYSR-type
MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLAKLRAWF
DDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFE
LAAESPLMMIMLNALSKQIYQRYPQATIKLRNWDYDSLDAIXRGEVDIGF
SGRESHPRSRELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHEKWDLDTF
LRYPHISICWEQSDTWALDNVLQELGRERTIAMSLPEFEQSLFMAAQPDN
LLLATAPRYCQYYNQLHQLPLVALPLPFDESQQKKLEVPFTLLWHKRNSH
NPKIVWLRDTIKNLYASMA
>Z5258 yieP, 
MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELGEQFGVS
RTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENF
HQVIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKENFRR
ERWIEVDMAWHEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLD
LHQAIVDAIIQSDGDAAFKACQALLRSPDK
>Z5275 yifA, putative transcriptional regulator
MAHTSRHNEFSIGASASLWECMLNQWLGRLYQNQDAHTGLQFEARIAQRQ
SLVKQLHERQLDLLITTEAPKMDEFSSQLLGYFTLALYTSAPSKLKGDLN
YLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQIAMLNGCTWLPVS
WARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNTLIRDLLKINVLDEVY
>Z5408 yihL, putative transcriptional regulator
MAENQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQA
LLNLEAESKIFRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGF
TEKNRTSDIPETLAPLIAVTPSTELYRITGWGALEGHKVFYHETYINPEV
APGFIEQLENHSFSAVWEKCYQKETVVKKLIFKPVRMPGDISKYLGGSAG
MPAILIEKHRADQQGNIVQIDIEYWRFEAVDLIINL
>Z5422 yihW, putative DEOR-type transcriptional activator
MMVFRGIFMSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVR
RDIRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSQTEEKKAIAEAVAD
YIPDGSTIFITIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEV
MVPGGTLRSHNSGIIGPSAASFVADFRADYLVTSVGAIESDGALMEFDVN
EANVVKTMMAHARNILLVADHTKYHASAAVEIGNVAQVTALFTDELPPAA
LKSRLQDSQIEIIXPQEDA
>Z5427 yiiD, putative acetyltransferase (EC 2.3.1.18)
MSQLPGLSRETRESIAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGS
ERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKG
LGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTT
PIRHFLMIKPVATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTG
QKFITTMPETGNQNPHHTLXAGSLFSLATLTGWGLIWLMLRERHLGGTII
LADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQMQVEIFGDE
TPGAVFEGTYIVLPAKPFGPYEEGGNEEE
>Z5431 yiiE, orf, hypothetical protein
MSNICKVVVMAMNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYL
ERQQFPVRKAKGGRQKGEVVGVDDQCKEHKE
>Z5524 yijC, orf, hypothetical protein
MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSAERSFAS
LSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRI
AKGGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHF
IAELADYLELENHMPRAFTEAQAEAMVTIVFSAGAEALDVGVEQRRQLEE
XLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE
>Z5512 yijO, putative ARAC-type regulatory protein
MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLEIVLEGE
FVDTGAGATLVPGDVLYVAAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQ
WDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLL
SHCRDLLGSQIQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPN
YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHACGFVDSN
YFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
>Z5598 yjaB, orf, hypothetical protein
MVISIRRSRHEEGEELVAIWCRSVDATHDFLSAEYRAELEELVRSFLPEA
PLWVAVNERDQPVGFMLLSGQHMDALFIDPDVRGCGVGRMLVKHALSMAP
ELTTNVNEQNEQAVGFYKKVGFKVTGRSEVDDLGKPYPLLDLAYVGE
>Z5570 yjaE, putative transcriptional regulator
MLNQLDNLTERVRGSNKLVDXWLHVRKHLLVAYYNLVGIKPGKESYMRLN
EKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANT
QQIMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLD
AARVKHPA
>Z5740 yjdC, orf, hypothetical protein
MGKTEENSVQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFW
PDKEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKN
NRYPGCLFIAACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPA
MVAKQMELVLEGCLSRMLVNRSQADVDTAHRLAEDILRFARCRQGGALT
>Z5726 yjdG, putative 2-component transcriptional regulator
MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPI
DLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGV
VDYLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQ
DPRRLPKGLTPQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLI
WLVNCHILFTSIHYGVTGRPVYRYRIQAEHYSLLKQYCQ
>Z5785 yjeB, orf, hypothetical protein
MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLS
RAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITP
ACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE
>Z5789 yjfJ, putative alpha helical protein
MGILKSLFTLGKSFISQAEESIEETQGVRMLEQHIRDAKAELDKAGKSRV
DLLARVKLSHDKLKDLRERKASLEARTLEALSKNVNPSLINEVAEEIARL
ENLITAEEQVLSNLEVSRDGVEKAVAATAQRIAQFEQQMEVVKATEAMQR
AQQAVTTSTVGASSSVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGR
DLDEKLAEAGIGGSNKSSAQDVLARLQRQQGE
>Z5800 yjfQ, putative DEOR-type transcriptional regulator
MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLDESGKLK
KVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVIN
CGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQS
ITLSPQGSENSLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGK
LVVLVDSSKIGERAGMLFSRADQIDMLITGKNANPEILQQLEAQGVSILR
V
>Z5862 yjgJ, 
MVLEGIHXHDPQARDIAXQYYHAAETAIYDYIARLHPQSAQCVTDFMSTV
MSGLSAKAREGHSLEQLCATAALAGEAIKTILKE
>Z5926 yjiE, putative transcriptional regulator LYSR-type
MTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRKIKIAAAHSL
SLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLLE
APFDHIRLFESQLFPVCASDEHGEALFDLVQPHFPLLNYSRNSYMGRLIN
RTLTRHSELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQL
VVLNRDELVIPIQAYAYRMNTRMNPVAERFWRELRELEIVLS
>Z5941 yjiR, putative regulator
MTRYQHLATLLAERIEQGLYRHGEKLPSVRSLSQEHGVSISTVQQAYQTL
ETMKLITPQPRSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDLVLDMLVA
HSDSSIVPLSKSTPDVETPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRV
LREQVARLMLDSGSVVTADDIIITSGCHNSMSLALMAVCKPGDIVAVESP
CYYGSMQMLRGMGVKVIEIPTDPETGISVEALELALEQWPIKGIILVPNC
NNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATEYPRPRTIHSWD
IDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPSTQM
AAATFVLEGHYHRHIRRMRQIYQRNLALYTCWIREYFPCEICITRPKGGF
LLWIELPEQVDMVCVTRQLCRMKIQVAAGSIFSASGKYRNCLRINCALPL
SETYREALKQIGEAVYRAME
>Z5957 yjjM, 
MYNISRTTVRHILSHLRECGVLTQVGNDYVIARKPDHDDGFACTTASMSE
QNKVFEQAFFTMINQRQLRPGETFSELQLARAAGVSPVVVREYLLKFGRY
NLIQSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWL
QAKTMLERHRLLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEII
SVIFHFHYQWDESDLKQRNIIAVDEHMTILSALICRSDLDATLALRNHLN
SAKQSMIRSINENTRYAH
>Z5966 yjjQ, putative regulator
MLPGCCKNGIVISKIPVMQAGLKEVMRTHFPEYEIISSASAEDLTLLQLR
RSGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSRSWYSQAVEL
LMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMTETHDFSYR
SVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHS
NAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS
>Z0376 ykgA, putative AraC-like transcriptional regulator
MRYDKELTENVMIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQ
LLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIAISLHFDSQQSFS
REFKKLFGCSPRVYRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIF
GNSFKYDIEVSNKSPDEEVKLRRHHLARCMKNFKTDTYFVSTFEPSTKSV
DLLTVETFAGTVCKQTDSEMPKEWTINRGLYASFRYEGEWEHYPEWARNL
YLMELPARGLARVNGSDIERFYYNEDFVEKDSNDVVCEIFIPVRPV
>Z0382 ykgD, putative ARAC-type regulatory protein
MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHALTQGAAK
LEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARY
FLTSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICA
TFFTLAVREWIAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWSVESLA
SIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMFSREMLPVVVIAE
SVGYASESSFHKAFVREFGCTPGEYRERVRQLAP
>Z0361 ykgK, putative regulator
MTWQNDYSRDYEVENHMECQNRSDKYIWSPHDAYFYKGLSELIVDIDRLI
YLSLEKIRKDFVFINLNTDSLTEFINRDNEWLSAVKGKQVVLIAARKSEA
LANYWYYNSNIRGVVYAGLSRDIRKELAYVINGRFLRKDIKKDKITDREM
EIIRMTAQGMLPKSIARIENCSVKTVYTHRRNAEAKLYSKLYKLVQ
>Z0709 ylcA, putative 2-component transcriptional regulator
MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIIL
DIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLV
KPFAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRIT
LTSKEFTLLEFFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRG
KIDNDFEPKLIQTVRGVGYMLEVPDGQ
>Z2177 yneJ, putative transcriptional regulator LYSR-type
MDLTQLEMFNAVAEAGSITQAAAIVHRVPSNLTTRLRQLETELGVDLFIR
ENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFXLGSLESTA
AVRIPATLAEFNRRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINH
TAIDGIPVYREELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFES
WFHADGAAPGTIHEMESYHGMLACVVAGAGIALIPRSMLESMPGHHQVEA
WPLAEQWCWLTTWLVWRRGAKTRPLEAFIQLLDVPDSTKQGYQ
>Z2589 ynfL, putative transcriptional regulator LYSR-type
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQIGARLL
ARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFT
SSAPFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLR
NTALPETLEHAVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPH
VGTGLYDDILGLMRRYHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFK
RVQLNEMRWVPIAEEDAVSEMWLVWPKHHEQSPAARNFRIHLLNALR
>Z3826 yphH, putative NAGC-like transcriptional regulator
MKMRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNIL
QELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVA
NACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDRTINLALAIH
GQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK
WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV
VCDCGRYGCLETVASLSALKKQARVWLKSQPVNTQLDPEKLTTAQLIAAW
QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGEHWLNT
IIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVETQLRQI
>Z4166 yqeH, orf, hypothetical protein
MTSSITNEIMQLYTDREVLNMGLCSRYKSLTCNSCSMHCQIMPEESPRLQ
YCANSCFCMWTEESSYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLF
LEKDWIDYLASTDMGIVLVSDRNMQSLANYWRKHNSAISAVIYNDDGLDV
ANEKIRQLFIGRYLSFTRGNTLTQMEFTIMGYMVSGYNPYQIAEVLDMDI
RSIYAYKQRIEKRMGGKINELFIRSHSVQH
>Z4167 yqeI, putative sensory transducer
MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVA
QQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRG
FKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKIL
KHIKSYLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCXFNVT
EDTIDGLKEFDKYKTRILDSGINCKKYPWLYFPLAKSSPGMIVMACNKNY
NQHEVAGCLTLSYREVNRG
>Z4293 yqgE, orf, hypothetical protein
MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFRRSVVYI
CEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGG
PLAEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLV
ALGYASWEKGQLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVD
ILTMPGVAGHA
>Z4363 yqhC, putative ARAC-type regulatory protein
MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSFLPMSCL
FLQSAGEMLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSL
SELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANE
YLLLTVPLPFECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPS
MAASGINSATLSEEILCAAERLLDVMARPLDARILGKQIIREILYYVLTG
PCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAF
HHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQF
SREFKRYFGVTPGEDAARMRAMQGN
>Z4424 yqjI, orf, hypothetical protein
MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRG
GGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVI
YPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIK
ARCVGAALRQNPQMKRALDNFKAVLNLRVNQSDITDAQIKKIIAVIDRAA
FDITQLD
>Z4553 yrbA, orf, hypothetical protein
MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVKK
QQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF
>Z5823 ytfH, orf, hypothetical protein
MGSLHRFVLCLNTLTPKLTFSKYAQKGKYEMSQVSLSQQLKEGNLFAEQC
PSREVLKHVTSRWGVLILVALREGXHRFSDLRRKIGGVSEKMLAQSLQAL
EQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAV
RDERAA