Gene list
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COG category: Transcription
Organism: Psychrobacter arcticum 273-4, 273-4
Number of genes found: 86
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| Psychrobacter arcticum 273-4, 273-4 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Psyc_1236 | probable transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1482020 | 930 | + | 0.466667 |
| NA | Psyc_1844 | possible transcription regulatory protein ,LysR family | SubName: Full=Possible transcription regulatory protein ,LysR family; | chromosome | CDS | 2269252 | 936 | - | 0.472222 |
| NA | Psyc_1094 | transcriptional regulatory protein, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1305370 | 915 | + | 0.437158 |
| NA | Psyc_0807 | probable transcriptional regulatory protein, IclR family | SubName: Full=Transcriptional regulator, IclR family; | chromosome | CDS | 966522 | 759 | - | 0.465086 |
| NA | Psyc_0050 | probable transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 56291 | 936 | + | 0.41453 |
| NA | Psyc_1672 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2069380 | 867 | + | 0.452134 |
| NA | Psyc_1666 | putative Trp operon transcriptional repressor | SubName: Full=Trp operon repressor; | chromosome | CDS | 2063570 | 276 | + | 0.445652 |
| NA | Psyc_1381 | possible transcription factor | SubName: Full=Possible transcription factor; | chromosome | CDS | 1666288 | 1092 | - | 0.400183 |
| NA | Psyc_0998 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1191327 | 561 | - | 0.390374 |
| NA | Psyc_1570 | posible transcriptinal regulator | SubName: Full=Condensin subunit ScpB; | chromosome | CDS | 1922067 | 552 | + | 0.442029 |
| NA | Psyc_0472 | possible transcriptional regulator, Cro/CI family | SubName: Full=Possible transcriptional regulator, Cro/CI family; | chromosome | CDS | 579446 | 675 | + | 0.391111 |
| NA | Psyc_1174 | probable transcriptional regulatory protein, iclR family | SubName: Full=Transcriptional regulator, IclR family; | chromosome | CDS | 1404421 | 846 | + | 0.413712 |
| NA | Psyc_0730 | possible transcriptional regulatory protein, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 870804 | 564 | - | 0.460993 |
| NA | Psyc_1798 | possible transcriptional regulator, LysR-family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2209091 | 909 | + | 0.456546 |
| NA | Psyc_1230 | probable transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 1474615 | 489 | + | 0.437628 |
| NA | Psyc_0703 | putative transcriptional regulator, LuxR family | SubName: Full=Putative transcriptional regulator, LuxR family; | chromosome | CDS | 836624 | 636 | - | 0.415094 |
| NA | Psyc_1395 | possible transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1687382 | 609 | - | 0.490969 |
| NA | Psyc_1476 | possible transcriptional regulators protein family | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1794791 | 513 | + | 0.432749 |
| NA | Psyc_1082 | possible ATP-dependent DEAD/DEAH box RNA-helicase | SubName: Full=Possible ATP-dependent DEAD/DEAH box RNA-helicase; | chromosome | CDS | 1292149 | 1704 | + | 0.477113 |
| NA | Psyc_0989 | merops peptidase family S24 | SubName: Full=Merops peptidase family S24; | chromosome | CDS | 1184381 | 720 | - | 0.438889 |
| NA | Psyc_1132 | probable transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1354889 | 912 | - | 0.428728 |
| NA | Psyc_1626 | probable Transcription regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2008784 | 990 | - | 0.461616 |
| NA | Psyc_1469 | conserved Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1786000 | 876 | + | 0.46347 |
| NA | Psyc_0892 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1066746 | 681 | - | 0.443466 |
| NA | Psyc_0804 | putative transcription regulatory protein, IclR family | SubName: Full=Transcriptional regulator, IclR family; | chromosome | CDS | 962616 | 828 | - | 0.469807 |
| NA | Psyc_1329 | possible transcriptional regulator ,TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1605538 | 741 | - | 0.377868 |
| NA | Psyc_1665 | possible transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 2062387 | 666 | - | 0.463964 |
| NA | Psyc_1351 | probable transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1628662 | 639 | + | 0.43975 |
| NA | Psyc_0386 | putative transcriptional regulatory protein, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 481988 | 435 | - | 0.388506 |
| NA | Psyc_1905 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2353814 | 252 | - | 0.436508 |
| NA | Psyc_1136 | probable DNA binding protein, helix turn helix motif | SubName: Full=Probable DNA binding protein, helix turn helix motif protein; | chromosome | CDS | 1360421 | 306 | + | 0.421569 |
| NA | Psyc_0891 | possible transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1065699 | 684 | + | 0.435673 |
| NA | Psyc_2022 | putative two-component response regulator (CheY-like receiver domain) | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2490519 | 717 | - | 0.454672 |
| NA | Psyc_0291 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 357352 | 375 | - | 0.389333 |
| NA | Psyc_2085 | probable DNA helicase | SubName: Full=Probable DNA helicase; | chromosome | CDS | 2563238 | 2427 | - | 0.478368 |
| NA | Psyc_2076 | probable two-component transcriptional response regulator (ompR family) | SubName: Full=Probable two-component transcriptional response regulator (OmpR family); | chromosome | CDS | 2552276 | 675 | + | 0.441481 |
| NA | Psyc_0985 | possible DNA binding protein , Helix turn helix motif | SubName: Full=Possible DNA binding protein , Helix turn helix motif protein; | chromosome | CDS | 1180570 | 348 | + | 0.333333 |
| NA | Psyc_1056 | putative transcriptional regulatory protein LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1254867 | 900 | + | 0.426667 |
| NA | Psyc_0314 | possible transcriptional regulator | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 386881 | 729 | - | 0.470508 |
| NA | Psyc_1791 | probable transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 2202140 | 291 | + | 0.463918 |
| NA | Psyc_0952 | putative transcriptional regulatory protein, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1137936 | 375 | + | 0.464 |
| NA | Psyc_1820 | putative two component response regulator | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2238714 | 723 | + | 0.42462 |
| NA | Psyc_1775 | putative stress-responsive transcriptional regulator, PspC | SubName: Full=Putative stress-responsive transcriptional regulator, PspC; | chromosome | CDS | 2186075 | 213 | - | 0.413146 |
| NA | Psyc_1162 | putative two component system regulatory protein | SubName: Full=Putative two component system regulatory protein; | chromosome | CDS | 1389665 | 702 | + | 0.431624 |
| NA | Psyc_2142 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 2645192 | 459 | - | 0.437909 |
| NA | Psyc_0127 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 149143 | 2523 | + | 0.462545 |
| NA | Psyc_1108 | probable transcriptional regulator, LysR family | SubName: Full=Probable transcriptional regulator, LysR family; | chromosome | CDS | 1318828 | 1014 | + | 0.454635 |
| NA | Psyc_1084 | probable transcription regulator protein | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 1295387 | 1413 | - | 0.465676 |
| NA | Psyc_1846 | CspE | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 2271782 | 210 | - | 0.414286 |
| NA | Psyc_1695 | possible acetyltransferase protein | SubName: Full=Possible acetyltransferase protein; | chromosome | CDS | 2096525 | 624 | - | 0.424679 |
| NA | Psyc_1596 | transcriptional regulatory reciever protein | SubName: Full=Two component heavy metal response transcriptional regulator, winged helix family; | chromosome | CDS | 1951340 | 717 | + | 0.417015 |
| NA | Psyc_0905 | probable transcriptional regulatory protein, IclR family | SubName: Full=Transcriptional regulator, IclR family; | chromosome | CDS | 1084339 | 759 | - | 0.444005 |
| algH | Psyc_0057 | putative transcriptional regulator | RecName: Full=UPF0301 protein Psyc_0057; | chromosome | CDS | 63380 | 564 | - | 0.462766 |
| alpA | Psyc_0868 | possible prophage regulatory protein AlpA | SubName: Full=Possible prophage regulatory protein AlpA; | chromosome | CDS | 1035457 | 282 | + | 0.411348 |
| arsR | Psyc_1075 | probable transcriptional regulatory protein, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1285357 | 324 | - | 0.388889 |
| capB | Psyc_0942 | putative Cold-shock protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 1128371 | 216 | + | 0.421296 |
| cspA | Psyc_0531 | transcriptional regulator, CspA | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 625818 | 213 | + | 0.441315 |
| fis | Psyc_1471 | probable Fis-type transcriptional activator | SubName: Full=Probable Fis-type transcriptional activator; | chromosome | CDS | 1788227 | 360 | + | 0.425 |
| greA | Psyc_0813 | GreA transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 975447 | 477 | - | 0.457023 |
| hepA | Psyc_1986 | probable superfamily II DNA/RNA helicase | RecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; | chromosome | CDS | 2449487 | 2949 | - | 0.48118 |
| lysR | Psyc_1414 | probable transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1711249 | 873 | + | 0.452463 |
| malT | Psyc_1446 | probable transcriptional regulator, luxR family | SubName: Full=Probable transcriptional regulator, luxR family; | chromosome | CDS | 1751547 | 2766 | + | 0.372379 |
| mdcY | Psyc_1149 | putative transcriptional regulator protein, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 1374461 | 672 | + | 0.354167 |
| metR | Psyc_0216 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 254413 | 891 | - | 0.480359 |
| mfd | Psyc_1484 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1801921 | 3732 | - | 0.459807 |
| narL | Psyc_0602 | nitrate/nitrite response regulator, possibly NarL | SubName: Full=Nitrate/nitrite response regulator, possibly NarL; | chromosome | CDS | 717103 | 660 | - | 0.410606 |
| nusA | Psyc_0068 | putative nusA antitermination factor | SubName: Full=NusA antitermination factor; | chromosome | CDS | 76010 | 1485 | + | 0.434343 |
| nusB | Psyc_2070 | probable NusB antitermination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 2544836 | 1128 | + | 0.453901 |
| nusG | Psyc_1892 | NusG antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2336805 | 531 | - | 0.408663 |
| ompR | Psyc_0126 | transcriptional regulatory protein, OmpR | SubName: Full=Transcriptional regulatory protein, OmpR; | chromosome | CDS | 147959 | 765 | - | 0.487582 |
| parB | Psyc_1319 | ParB family binding protein | SubName: Full=Chromosome segregation DNA-binding protein; | chromosome | CDS | 1589303 | 1128 | - | 0.45922 |
| phoB | Psyc_1923 | putative two-component response regulator | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2371567 | 705 | - | 0.449645 |
| ppkA | Psyc_1539 | putative Protein kinase:Serine/Threonine protein kinase | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1883793 | 993 | - | 0.411883 |
| relA | Psyc_0343 | putative RelA/SpoT family protein | SubName: Full=Putative RelA/SpoT family protein; EC=2.7.6.5; | chromosome | CDS | 423686 | 2541 | - | 0.437623 |
| rhlB | Psyc_0943 | putative ATP-dependent RNA helicase | SubName: Full=Putative ATP-dependent RNA helicase; | chromosome | CDS | 1128808 | 1191 | + | 0.438287 |
| rho | Psyc_1990 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2456173 | 1308 | + | 0.44419 |
| rnc | Psyc_0333 | putative dsRNA specific ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 412567 | 798 | + | 0.438596 |
| rpoA | Psyc_0514 | DNA-directed RNA polymerase, 30-40 kDa subunit:RNA polymerase, alpha chain, bacterial and organelle | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 608345 | 1008 | + | 0.427579 |
| rpoB | Psyc_1887 | RNA polymerase beta-subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2329248 | 4119 | - | 0.434814 |
| rpoC | Psyc_1886 | RNA polymerase, alpha-subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2324839 | 4221 | - | 0.44018 |
| rpoD | Psyc_1260 | putative sigma-70 factor (RpoD) | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 1516085 | 1944 | + | 0.467078 |
| rpoH | Psyc_0207 | putative Sigma 32 (RpoH) | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 246530 | 1026 | - | 0.467836 |
| rpoN | Psyc_0203 | probable Sigma-54 factor family (RpoN) | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 242863 | 1710 | + | 0.45731 |
| rpoZ | Psyc_1724 | RNA polymerase, omega subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 2124134 | 261 | + | 0.452107 |
| spoT | Psyc_1725 | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase:(p)ppGpp synthetase II | SubName: Full=Guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase:(P)ppGpp synthetase II; EC=3.1.7.2; | chromosome | CDS | 2124740 | 2187 | + | 0.442615 |
| vacB | Psyc_2101 | probable exoribonuclease RNase R | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 2596480 | 2316 | + | 0.426598 |
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