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# Rickettsia felis URRWXCal2, URRWXCal2; California 2

>RF_0202 unknown
MTNNRLIDSLQNEANKEEFEGNTEALATAAYTQVTEDASTGLTYKLPLEA
SYAKSLTKKYYSASEVTKHLNIALHQLRYLETKIPDLSNYKINNRKYYTV
NDIDLLQKSLKKDITSPSTDKVHILLTNFHNLSLQIKKILADSSMTCV
>RF_0263 ATP-dependent RNA helicase RhlE
MDYIMKNFNLSEELIIALETMNITEPTEIQKQSIPVAMTGSDILASSQTG
SGKTLAYLLPLIDSFIKNKNYCFNSCSD
>RF_1397 Prophage antirepressor
MNNSDELNKLVIFKDKTIRRILHNNEWWFSVVDVVGALTDSSNPGAYWRK
LKQRLNEEKSEVVTNCHGLKLTATDGKKYITDCANTESLLRIIQSIPSPK
AEPFKQWLAKVGYERIQEISDPEKSIDRARDNWKRHGRSEKWIQQRMMGQ
ETRNKLTDYWKNHEVTKESEFAILTNIIHQEWTGISIKEHKNIKGLKNQN
LRDHMNEAELIFTALAELSTRQVAETNNATGMEENKIASKIGGGIAKNAK
TALENKTGKKVISTENYLPPKLTK
>RF_pd02 unknown
MSPNPDFITIVKIANYFNCAVDQVVGRRKFLPSINLIVSFNNPDLNDINS
NLCNFLKAKLSQDNISPYLLSKNIGFSKKIIHCFLKANSPYKMLSTNVII
ALADYFNVSVDDMIERYPTTKQ
>RF_1201 unknown
MSEDIRSKERFNRINDISVTNTDGPEEIRNNFKKFVLNILETDNITPYKL
SEKTGTHETAWKNFLDGRTKMPDMGAIVALADYKNVPLDEVIGRDINKEK
KITVEIKQTPEISASIAKLPKDILQEAMLIGEKTRGFIHKPTTKETKSFA
EQVKNSNKPKGRSI
>RF_0875 Putative transcriptional regulator
MQLTSFTDYGLRSLIYLASKPERVCSVKEISEYYNISLNHLVKVIHKLAQ
LGYINSSKGKGGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCR
ITNSCQFKHFIKEASEAFIKTLNNYTLEDAMITKTIQIEDKK
>RF_0044 Putative transcriptional regulator
MGDKIFHNLSGKTLVATPHAITKGIYHKSLIYMLSHTEEGAIGLIFNRLV
NHIDLKSFFKIKNDEITTPVMVPIYLGGPVEHEKGFFLHSSDYNKNLLLD
FQNDLAVSSNLEISEDIAFGKGPKNSLFIVGYTAWKPGQLEEELEKNLWL
VMDCNKEFIFADNPESKWHNALKHLGIDEIHFSSQIGNA
>RF_0980 Acetyltransferase
MQPIFTFRVVNFTEKNLSILIADSIGNPTTEKISQVLESYKNTKLHLIGC
FIEENLIGIIGIEVLSIQAIIRHISVLKTFRSQGIGKQLILYIISHFTLK
KITAETDDSAVNFYRALGFNCEIFEGKYNQRYNCTLHLQ
>RF_0264 ATP-dependent RNA helicase RhlE
MIHLLKIKTTALILVPTRELATQIHSTLNKVTTSYKINSAVLIGGEPMPK
QFMQLKKNPKVIIGTPGRIIDHLNRGSLKIDRIGITVLDEMDRMLDMGMK
EQLEEINKFLPEKRQVLMFSATMPKHIIAVSQKYLNNPIRITVGATNKAA
AEIKQESMHVSDKEKFSELTKQLGNREGSVIIFVKTKRSADQLAKMLKYE
NHKAEAIHGDLSQRQRERVILSFRKSNHRIMVATDVAARGLDIPHTQHVI
NYDLPMCPEDYLHRIGRTGRAGATGHALSFISPDDVIRWRAIDRLVNKGE
TTPRSEFRSDKNNRKRSFGKRVGGEGKKFNSFDNNRKKTFDGNSYGNKRK
KVS
>RF_1339 Predicted transcriptional regulator
MNVSLTPELEKYVNRQVESGFYHSSSEVIRAALRLMVKSENISQNAQFEN
YKTWLNHEIQIGLDQAAEGKLIPGEKALQDIRDFRKAYLKNNG
>RF_0156 unknown
MTSIYHILDNVPAIYKQDMEIEYEHLAMQLIKSGKLRIDTDNCCNFARFT
EPALNISLMVSKEELTSPHLIPETTKLFQNLYRNSASDQKIKSIFNNLKQ
QIQKLQPVKKEVTEMLARLFVQSAHPIVIRWLLLNKTEVFLTYSHNIGDM
MDMVSWQRVGGNSGMQSTNGKDVAIFVSCGGNPFAENNKDYPMYGNGWPA
VARLQIIAAQELGHFADIKRDDKGRQITRHSANFSGTKATDKVRIARKND
IIHCHNLLSKLLKAGMKKQLDYETKLKFYNANKVSGLKVYAIKFMIFIYK
FRLLNYSSRNNLIFVKKFKTDKYMALMIEAMFKDMQANLSPNAEVYKNKN
PEIEEAVACIEALARVPQQAVKWGYLTTKETMHDLYKIYYNEVIPSLITS
YNAVTGENYKRDFKKPKNGLFSRINIFRNKKLVLKPVREL
>RF_0838 unknown
MTETTAKIMKKILKIILFITIFIILAYSGLWFTIMFSLSHSINQKYAGTN
LNIEETDNNPNQQYLIKFSKVQPYGFPFKLGISVINWQEESINRVIEFTT
PINIGYDLLKQKLFINFSGEAFGKFKPVQRGFGVRFYNENCILSTKIPLN
FKLFEIVRSKKDLFEIINLIENIKFTSGKTEIFDLVDNQKLYEEDHTILT
MLFDKSKYYISKQDFLDNIPQKLEIYYETEIVKSNLEDRIIPAGLLLYRP
AWNNNFKFSGNFLISTSSLHFKDIAKDLTIEVTNAKINSNNFENNINLLY
KGKLNDFGNNNIDLLIDSQFKLKPGFIIGSLEFIKKYYDRQTYLFKLSDN
NLYKDFNNELSYILNNNKQYNFSIFEDRQYNFNLNINLVTELNKLTRAQI
NALSLYSNASGFNITNETIVNTLKDSYSKGTIVINDYSKIIDVLSLYVYG
VGDFKNLSKESKEVYGDALKSFLKTISDHPNSSNLIDASIEYEFDLSDLN
KAKIGNIDDINKLIPLYYLSLYQAAVKKVKPGENVKEKIMELIPSVNQKI
LEECIVDEPR
>RF_0187 Guanosine polyphosphate pyrophosphohydrolases/synthetase-like protein SpoT4
MLAEFVADEAPKLFTSNMINTALLHDTIEDTELTAEMITEIFEIEVARHV
EGLTRIKPYGKISAEESLNLLIKQKRYDTVLIKLFDRIHNVQTLAAKSPE
KAKKIILETFKKFLVVAIHLECYEIEEKFNEICYRFLYKDKFSQQKQISL
FTMNNLLLFPTFENDLDQTYKL
>RF_0577 unknown
MNDSIKHPDKLASERLKERRLAVGISQKELGQALDISALQVKKYEEGLSN
IPISRLYVFAKVLNTPLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIES
DFLNNIAEEEGQYENDVSFDYKELSRTMERELLSLTRAFTRVQNPNIRKI
IIELVRSVSISCE
>RF_0116 ParB-like partition proteins
MAKNKGLGRGLSSLLGEEVISIESEIIQIINIDKIRPNENQPRKNFEYDK
IKELADSILNNGLLQPIIVDNNFQIIAGERRWRACKLAKVLEIPVIIKNL
DARESMEIALIENIQRTDLTVMEEARGFKYLVENFNYTTEKLAERLGKSR
SHIANLLRLNNLPQSIQDKVNENILSMGQARCLINHEHAEVMADHIISND
LNVRQTEELVRQWYKNEYTKSPNNNNKVGKRFLKDNATDNDLESLVKVLS
EKFGIKVTIENYSLGGKLIFHYKNLEELDLILLKLN
>RF_0416 unknown
MNKNEFTEYVKELLEPYGSVAVRAMFGGYGIYKGGVMIGIIKSNELYFKS
DLSTYEYFQSFGSEPFIYQSKGKLVTLSYWKVLSEIMEDQELLGKWFKLA
LNAAINSQKKK
>RF_0537 Transcriptional regulator, AbrB family
MIVQKSYIDNNGRLVIPIKVRQKLKLKIGDKVTIKYNNSELIISSFYSNI
EKARNILDKYKDIDLYKELKLMRKEEDIN
>RF_0157 unknown
MTSLSITLPDNIAKASNEIAKKLGLSRTAFIRQAIIHELNNLQSQFEQDD
IIKSFNAMKKSKKYLEEMTEMTEITENLNSELLEEKEKWWSKKKY
>RF_0969 Acetyltransferase
MTTIKLYYLKDWNKIKLHGWQAICDKGLVALKSPHKLHRCNLCWDINSES
ILQEIIAFYGDNPFFLYNTCNINSNYLQSEGNLLEIKFETYNIKKINCYQ
NDNDPMFLETQDIYLWTKVLANAINKEHKILFLFIKTISALKNSKFFLLY
WKNIPVATSMLSIYDNNAVLSFVTVQKQFRLQGLGRTIILKIISLAHDMD
IKTIYLYSTERISHIYVKIGFTLVNSFHLYRSTL
>RF_p21 unknown
MMYITALQLKVARNILDLGVRDIAVLLHVSKTTISKVELNKTRDFLPKHN
AALVHFFSCNNISFPNPFSIQYKPQNIINTNTESAITRFQLKGARCILNI
SQADLAKALNINRSVIIEAEKYQNEQRLTLFGQQKELEIIQFFNDNNIVL
YDHLSLFFRKRVDK
>RF_0112 unknown
MNFSNYPFIKEDIQCIADYLRNNKTIERVFLDNCGINDKQVKILAEIFRL
NKTITKLSLVSNKAITNIGIKTLLEIKHNNQYKRAELEISPNFNDNSEFQ
LIPEIDILNKNSVNTYLKKTKARNLDSEIENKNLQPLKNYHELKRPFIKN
GNKLLKLIAESHNEITKTGNSINKLIVMVGMNGVGATTLSCFLSGQKLEE
DEDRSLYAKEPKYNEKIHHQANNGYKLVNNFFISDDEGGINIIECPGIHN
KPINSIQTILNLYIYRQILELAEKVRFSVVIRDNSANDVVDSTYQQFTNI
FRDSNGQLTPEIKEQLKDAVSYIISVADYKTNEEKKAKIKVEESKLRKDA
KRQNLDEGQKFIIEELGKSVNLFKKPSGDTKSFLETLDTKDFFIVIDAIS
LVVRTIANNEIEAEREQIFSYIEAIFQSKNEEEKNANIVLIDEWQRKILD
VLAISKDTGDVLPKSASVNFATTIEVISQSKNEEEKNTNITVIDGQKHPD
LYVLAPSKGTGDVLPNSASNTNSTITAEEQKNIMTTALKFELQDILSKKN
LYEPLIIEQVKKLMSLCIKPFSDTLNIKDLSQAKDLNQVKNLNQVKDSSQ
NKWATIKEIYIKPQKSETQKPILSQVLSNQVKENILTIGKIIINFFQVNK
HNIISPFISSDNLNLHQGLDSDTFSNNYSLIQPYLPKKILNKSPAQETEE
SFFPALKEIEELNEIYIKYSDDHLTMVTSFLEIIRKFYESKDISAKIHFQ
EILGNYVYFLNQQWKALSFCKKLYPQSQKWQPLTEAVDKAKKILIEENLL
DIKLKNNGTTKYYTEALEWLDKLTGPQVEVVVIAINEIKANAYYYLGMIY
ENSESQLDWFVAIREYIKTLEVDKDFNFLYGHDTIPYISSNICKKIGDLF
LVLGKWYKSKNENVSAIKLTHEAMKYFKVSLSIADIEESSNILHEIFSIL
KNKRETKVLCISLEKDLHISVAEFLFQLNLIQKAGLEYLRAASRVDKNDK
EKQGLVSKALKAFDTDIAKNTAFIRAMLEKGKIEDLSMFTKEVNRTKFFS
DTQTLVNNFVPLPEPQAIEWPKVQQNQNEQLTNEQKETNKQNDIQPQKQE
EVLVQLQQTQQHQPPPLPPENSPLHTVENIQKPDYWYTEDDIKNILEANI
DKNKFSIVTHVDLAHPEQVRDALRERVHEDLIKNNKIVLMAINTGHGHWV
SMAISKDNNTNKVIFKYNDPLGRELNDRPDLIELITEVCSEVEIIDLQIL
QQDNTSDCGVFVCDDLIRQSQSLEILSTEQCGKQGLNLRKSQAETLKQSL
IAQQAQEQHVYINVDSNASDDEEDENNNGNNNEVARLPYGDNGEVDGLGI
ASQHNE
>RF_0354 Acetyltransferase
MTQDFEIVYAEEMDKTHRTIIIEALNKDAREKKGLVGDIESFSFSCLDQD
KNFVAGISGMSSWGGFYIDSLFVNENIRNQNYGTLLMQKAEDLARERDCN
FIHLVTMDFQAKPFYEKLGYKIEFAMHGYEKDSIMYYLRKDL
>RF_p02 unknown
MSPNPDFITIVKIANYFNCAVDQVVGRRKFLPSINLIVSFNNPDLNDINS
NLCNFLKAKLSQDNISPYLLSKNIGFSKKIIHCFLKANSPYKMLSTNVII
ALADYFNVSVDDMIERYPTTKQ
>RF_1230 unknown
MTLSRLYVTRLVILVKLCIYLSFIYSEVINMALATKVKEFLEEKLKQEKI
DRKYLAEVTNIPYTTVSRIMRAEANREFNPEIDTILKIAKYFNCTMDEVI
KRKVRHNS
>RF_1287 Phage-related transcriptional regulator
MSNKHIIEYQGKPAFVVIPFNEYQELINKKQCITDETLYAEAIAKNEEYF
PEDLVQKILNGENPIKVYREYRGLSQEQLAIKIGKTKQYISFIEKGLRKG
TIDTLKKLSTVLNVDLDML
>RF_0033 Transcriptional regulator
MANTTQSENKTEQKSEFKIGQRIVYPAHGVGEITNIEYHTIAGTEIKVYV
ISFSQDKMTLKVPVSRAAVVGLRAVASRKDLDVIYSTLQGKPKQGNRMWS
RRAQEYEGKINSGNIVAIAEVLRDLHKNVDNDRSYSERTLYESALNRLAG
ELAILENIHPTEAINKLVEVLREKLVA
>RF_0784 Predicted acetyltransferase
MSNNADLVDQSLIGTFRYFGLQERQIDGINYYLIHTGCNHPLWNMIVLPD
KVNVAQMDRMEEGFKLKGLPFAWWVDENNLSSEMLERFQNGKYADFGDVP
GMVYELKDYHEQIIDNKNIKIITEIEEYTKWVQVLAQGFGFSDDVCDIYI
NKLSKFIGDNKIFIPLAAYEENKIVATASIIFANGIAGFYNGSTMPEYRN
RGLASDLYRARFKILKEMGIDKAIIQTSPMATSLAEKLGFKKYTNYKIYC
QS
>RF_1207 Transcriptional regulator
MERIVTNMDQHGRVLIPVSIRERFNIHPGEKITIEIENSEIKIVSVDSII
DEMHKIFTKNQIDKNISIVDDFIAERRQEYLIEEKRSKRCPK
>RF_1316 Predicted transcriptional regulator
MEKFTDYLKEKLQNEEVLVAYINEALEQYSLDHNKELFLATLKEAIIARG
GVAKISEEAHINRQHIYKMLSSKGNPSFDNIGSLLNTLGLQLKVETRAAC
YNNTF
>RF_p29 unknown
MSIGQNLQKFLTQKISDMKIKKKDFIMKCGIKQPVFNKILDGSLTNPKLT
TITKLADFCNASIDEILGRAPKYYSSKKQTFNPINSHSITNNLLSVVKNT
MTDLDISAYQLAKRIHVSSNTLNMFLDPNVSATPGAATTLALANFLDASI
DDMIGRRPPSRTQEQKRDIPNQLSSLFKQDLEKLSDIKHSVKSSAAQNQN
IKKTTSIKHLNKHKDEGRSH
>RF_0262 cspA, Cold shock-like protein
MATNIVGKVKWYNSTKNFGFIEQENGGKDVFVHKSAVDAAGLHSLEEGQY
VIFDLEEKQGKAYAVNLRIK
>RF_0056 czcR, Transcriptional activator protein CzcR
MRVLLIEEEPEMANLIELTLASEGIVCDKASVGVEGLRLGKVGGYDLVIL
DLMLPDINGFEILLRLRAAKIKTPILILSSLTDTDQKITGFSSGTDDYLT
KPFVREELIARIKAIVRRSKGHVASVFRFDKVSVNLDTRTVEVDGKKVHL
TNKEYAILELLILRRGTILTKEMFLNHLYSSVDEPEMKIIDVFICKLRKK
LSDAAGGRDYIDTIWGRGYMLKEYDELQQKEILAQGA
>RF_1308 fic, Fic
MQYNIIDKKKKQLDEFRPLSPELAKNLDEWFKVELTYTSNAIEGNTLSRG
ETAIVIEKGLTIGGKTLVEHLEATNHAKALDVVYKLAKKKYSQITEKDIL
AIHHTILHGIDDYNAGHYRHVPVRISGSTIVMPNPMKVPALMADFISWLS
SVEKIHPIELAAESHYRLVTIHPFSDGNGRTARLLMNLILIMKGYPPAII
RPQERLAYITSLETAQLGGSKEKYQKIIYNAVNRSFDIYLKAVTGQEASD
IKKPEKLMKIGELAKAIGETVSTIRFWTKAGLLEIADITRSNYQLYSIEA
LQQCKKIQQLKKQRLTINEIKDKL
>RF_1360 greA, Transcription elongation factor GreA
MTNLTITNILAEIYIIENSILKLLNLYNIIMNTKFPITAKGFEKLEHELK
HLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIEGRIKELEDMT
ARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV
SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEYKELEL
>RF_0726 hipB, Predicted transcriptional regulator
MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKA
INRISVGRLVLIAEALDRNIDYFFEGLEEANKPQPVHTQHQRMCIEVSRN
FMKINSTEEQQAVNNLVKCLAGKEKLKTNA
>RF_0847 iscR, Iron-sulfur cluster assembly transcription factor IscR
MMLTTKGRYAVMAILEMAAKSSAEPVTLNEISVKQNISLNYLEQIFSKLK
KADLVKAIRGSKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTC
VPDTIKCNSHKLWKGLSKHIRDYFENISIKDALNLNLNI
>RF_0367 mfd, Transcription-repair coupling factor
MLQQKFPATAKSFFATHNFTKNLKQDFILSSSNEDEALQLYKQALFFSSN
ENIYYFPSYDTIPYDHTSPNANILSRRAEILTKLTTNNSNGKLLITYAAN
LLNKLPPKDFFSKYFLKLSPKMKFTTDELAMFLVENSFTRNASSIDVGEF
AVRGEIIDIILPGPKAYRINFSWDYIESIKEFDIDTQISTKSCSELVISP
ANEIVLNSETNGNFKNNYLRNFGVNHTDNPLYEAVISGRKFAGYEQLLPL
FYNSCSSLVDYLNDPIFIFDNLSKQAILEFEHSYNDFYSARSEVNKLKFN
SFYPTLSPTDLYFTASEITELLEQKNNIFISYENSEQATLIENISSASFI
EKKTVFDKLFEIIKAHSSKKIVIGAASLSGLERIKSITQNYEYKYNEINK
LDEAKASVINVGIIPLNQSFYTKEYLFITASELLEEKSSSTNTNKKLKNI
LLELDNLAEGEFVVHKDHGIGQFLKLEALEIKGKLHDFLKILYAGNDKLY
IPVENIEVIKKYGNDNAELDKLGSSSWQRSKAKLKNRIKEIALHLIQIAA
KRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLMD
RLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRF
IERFKGFGLNIKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKNTK
FFNLKLLIIDEEQHFGVGQKEFLKSLKSSSHVLAMSATPIPRTLQMSMTG
LKELSIIATPPLNRLEVRTMVMPFDPVIIRDALLREHFRGGRSFYVVPRI
KDIEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYAGKFDILVSTT
IIESGIDIAEANTMVIHKADMLGLSQLYQLRGRIGRGKVRGYAYLTVASH
KKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIKE
VGTELYQEMLEEQIAIFKDEPIVSEQLFIPTINLGLSVFIPDNYISDSAL
KLGLYRRIGNLSNEIEVEKFKDEMIDRFGSLPIEFNNLLDIVKIKLLCFK
LNIENLDSGDNGFVIKFYKNADMTDKILKFVSTYSNQAKIKPDNKLVYIK
KLVDKNIIVEVNQLLWKLGGCRLDVIPNTSLRGAKRRGNLIK
>RF_0872 nusA, N utilization substance protein A, transcription termination factor NusA
MSNIGNVEILQIIDSVAREKGISKEILISTVEQAVQVAGRKKYGNEYNIK
AQINRKTGEINLLRILKIVEDVEDYLTQISLEEALIKNPEAKIGDEIYEY
LPPIDHARVSAQAAKQVITQRVIEAEREKQYHDFKDRKGEIINGIVKRIE
YGDIIVDLSRAEAIIKKDQLIKGENFKPNDRIKVYVQDVRQETKGPQIFL
SRVDNQMLVKLFKLEVPEILEDIIQIKSVARDPGSKAKIAVFASDSSIDP
VGSCVGIRGNRVKAITNELNGEKIDIVLWSNDLAQFIVNALAPLAPGEIT
KILIDEDRHKVEVVVSQENQSIAIGRRGQNVRLASKLTGWNIDIMTEEQE
SKRRNEEFLTSTELFMEALDVEEVIGQLLSVTGFNSVEQIATSEVSALTR
IEGFEEELAVEIKNRAINYVDLKNEKIIKKLEDLGVEQELIDILELPLEL
ILKFAEYGIKTIEDLGEMSVNEFKNLAPNSNITDENIKLLIKTARQHGKL
KDS
>RF_1119 nusB, N utilization substance protein B
MSSNKINKKSIARIAAVQAIYQNILQNNDDMDDIMQNVLSFYQNNNSTTA
LPENLKISLSISHFKMLVKSVFENINKLDEIIDNHLTNDKDPAHMPILLR
ALLRVSICELLFCPTTPAKVVINEYTDIANDMLNEHEIGFVNSILDKIAQ
ENNKIS
>RF_1151 nusG, Transcription antitermination protein NusG
MTEQSIDNILPSSEKNVKQWYVVHTASGAEKRIKEDMLRRIAKQKMTDFF
EDILIPVFGVSEVKRGKNVKVEKKLMPSYILIKMNMTDKSWHLVKNIPGV
TGFLGSKTTPKALTESEIQNIFNNLEAEAKETKNSKLYEVGEIVIVTDGP
FETFTGTVEEIDQEKNRLKVSVSIFGKATPIELNFNQVKKND
>RF_0658 ompR, PetR protein
MQPHKAHILIVDDDSRILALLKQFLNKNEFLVSTASSVIEAKNLLKTSNY
DLIILDVMLPEITGLDFATTIRDAGNNIPIVMLTALSEADDRVKGLEAGA
SDYITKPFEPRELLLRINNLINNYNNFKKETNIIKFGNNFYNFDTKEFTK
NDQIISLSSTEQKLLEILIKNSGKSTSRFELSKIMGGLSMRSIDVQITRI
RSKLEDNPKEPKYLKTVRNEGYALYI
>RF_p35 parB, ParB-like nuclease domain
MQIVTVDPKDCTRWKYADRGNFEFGDVVELASDIKKNGQIEPVHLRYCKH
DPKFTYEIIAGSRRWKACLDAELPLRAVIEDVTDEHAAIIQIKENQGLDI
CDYSKGMYYTRLLADLSITQGHLAKNLGISRQKLVNYLYFAKIPKEIWDT
VGNVTKVTSRTACTIFSLSQKGSKYIEALIECADDIRKGIGATSLETLIL
SKVKNDIKILSHFPLALDDGTIVGTWKNGDFKLNKDLNINKDKFLKHILK
FF
>RF_0378 recG, ATP-dependent DNA helicase RecG
MYMLSILEKFLFAPVKTFINIREDTVSALKRLGIDNIRDLLFYLPVSYQN
KILSPNLTGVRDGEIIQTEVVIESVNLPKKGNQPLKITASNDTGSLLLVF
FHRPPPFIFNKLKVGTSHIISGKVQFFDHYLQISHPEFVTNPKLAKEIEP
IYSLTYLLSNKQLYSYIIKAMDIFEEKCKGLEDKEVKDYLDEVLQSLKML
HSLCHSRPLCHSRVGGNPEKMDPAVWPRDDTVAAKKQLAAKELIANQISL
LNVRTQIAGKQGNIYPKAAGIQANILNELGFELTSYQKQVIEEIELEQSD
KVEMMRLLQGDVGSGKTLVALLTMVNTVEAGFQATLMAPTDLLANQHYEF
FVKALKNTNIRVGLLTGKILGAARKNIMIQLENGEIDILVGTHALFQEKV
SFKKLGYIVIDEQHRFGVQQRLNLINKGVNPDVLVMTATPIPRSLALTMF
GDMTISKLMGKPKNRLPIATNTMSVNKIEHIIEAINKKLVAGERVYWICP
LIEQGEKEGPEEDGLLMDVMNRFDSIENIYRGYVGIIHGKMKNEQKDQIM
KQFKEGEIKILVATTVIEVGIDVPEATLIVIENAEQFGLAQLHQLRGRVG
RGSLQSYCILLYNPKRLGKVARGRFEIMKQTNDGFYIAEQDLKLRGSGEI
LGVKQSGEMEFFFADLAKDYDLLLKAHKFAEIGSKGNLNFVNFQIKLFAK
SQVSELV
>RF_0765 rho, Transcription termination factor
MNTTNKESTEELNNTESNNNHNNFAENGNIINLKQLKRKLPEELQAQAEE
LKIENINSLLKQELVFAILKKSVEQGGLIVGEGVLEVLPDGFGFLRSPEV
NYLAGPDDIYISPSQIRRFGLRTGDTVEGQIRAPKAGERYFALLKVNRVN
FEDPSKAYHRVHFDNLTPLYPDEKLGLELENNSKDSKDFSTRVIELVAPM
GKGQRALIVAPPRTGKTVLLQNIAHAITTNNPEVFLIVLLIDERPEEVTD
MQRSVRGEVVSSTFDEPASRHVQLAEMVIEKAKRLVEHKKDVVILVDAIT
RLARAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIENGGSLTIIGT
ALIETGSRMDEVIFEEFKGTGNSEIVLDRKIADKRIYPAIDITRSGTRKE
DLLVDKIILNKMWVLRRIIDPMGSSEAIEFLLKKLENTKTNGEFFEMMKS
PERPKNGL
>RF_1176 rnc, Ribonuclease III
MVAFEKLEKLLGYSFKNKELLIEALSHPSLRQHHEYKDDKDYERLEFLGD
AVLNLVVTEILFKNFANYNEGNLAKIRSYLVCKETICVVGTKLTLKDYII
MTHGEEVAGGRDNPNNIENATEALIAAIYLDSNIETTRNIIGKLWAEFIK
IQNLTDYDPKTALQEWAQASSHHLPIYRLIKREGAAHSSTFTVLVKVKDY
KQIGTGHSIKEAEKNAARKLLHKLK
>RF_0302 rpoA, DNA-directed RNA polymerase alpha chain
MLSLSKNWNTLIKPNKVAYENFPETNNKAKIVVEPLERGFGLTLGNAMRR
VLLSSLQGAAITSIKIPAIEHEFSSIPGVKEDVSEVILNIKGIEVKMHVA
EKRIMKLKATGPCVITAGMIETGHDVEILNPDHVICNLAKNKQLEMELTC
KVGKGYVLSTNSYEDNLPIGEIAIDALFNPVKSVTYKVENTRVGQVTDYD
KLIMFVETNGDLLPEMAVGLAARILQEQLQLFISFEEQEEDKQVKTDALP
FSPYLLKRVDELELSVRSANCLKNDNIIYIGDLVKRTESDMLRTPNFGRK
SLNEIKEILAKFNLRFGMDVPDWPPENIQELSNRYEDSYN
>RF_1146 rpoB, DNA-directed RNA polymerase beta chain
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQL
NIKDSERKNKGLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQ
RSLSYAAPLKVTLRLSIWDIDEDTGTREIKGIKEQEVYMGDIPLMTKNGT
FIINGTERVVVSQMHRSPGVFFYHDEGKVHSSGKLLYSARVIPYRGSWLD
LEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYYNSVTYKLVKN
KGWAVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAKKYFGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITSDMLNVINDLKIKN
VNVLVINPQSGPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAEN
LFYNLFFDAERYDLSEVGRIKMNSRLELNISEEVTVLTIDDIKNIVRVLV
ELKDGKGIIDDIDHLGNRRVRSVGELIENQFRIGLVRMEKSVIERMSAGD
VDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSEITHKRRLSAL
GPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDRHVTDEVVYLSAIEEGKYKIGQANSKVDKDGKLQGEF
INCRVEGGNFVMVEPQEVDFIDVTPMQVVSVAASLIPFLENDDANRALMG
SNMQRQAVPLIKTDAPFVGTGVEGVVAKDSGASVLALHDGIVEQVDSNRI
VIRTLEQKIDGSPSVDIYNLLKFQKSNHNTCINQKPLVKVGHYVKKNDII
ADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIVKEDVFTSIHI
EEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRV
FSRRGVEKDQRAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLIGQV
IVNGPKQVKAGQTITSEMLKGLSKGQFWQLTVEDANVMNEIEQIKVHYDE
KKDALDKRFATKVEKLQSGDDLPQGALKVVKVFIATKHKLQPGDKMAGRH
GNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIGQILETHLGWA
SINLAKKISTLVKEYKNKHIGIEQIKKFLLELYGENINYILERSEEEIIS
FCNKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYF
DRLVTVGQKYLLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFG
EMECWALQAYGAAYTLQEMLTVKSDDVNGRIKTYDSIVRGENNFESGIPE
SFNVMIKEFRSLCLNVKLEVTSS
>RF_1145 rpoC, DNA-directed RNA polymerase beta prime chain
MSVVNFYGQLSNTQQFDQIRINIASPDQVRSWSFGEVTKPETINYRTFKP
EKDGLFCARIFGPVKDYECLCGKYKRMKNRGITCEKCGVEVTVSRVRRER
MGHIELAAPVAHIWFLKSLPSRISTLLDMTMRDVEKILYFENYVVVDPGL
SILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKEIDFLKLKQE
LYEELQTTSSEVKKKKLVKRLKLVEDFLESENKPEWMIMDVLPVIPPEIR
PLVMLDGGRFATSDLNELYRRVINRNNRLKKLIESKAPDIIVRNEKRMLQ
EAVDALFDNGRRGRAAKNANKRPFKSLSDMLKGKQGRFRQNLLGKRVDYS
GRSVIVVGSELKLHQCGLPKKMALELFKPFIYSKLELYGIATTIKAAKRM
VEAEKPEVWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPLLIEGKAIQLY
PLVCAAFNADFDGDQMAVHIPLSIEAQLEARVFMMSTNNILSPANGRPII
VPDKDIVLGLYYLTLAFDNEVGEGMMFSDLAEMEHALYNKFITIHTKIKY
RRNQLNAEGKMVPVIIDTTYGRLMVGELLPSNPNIEFKFINKQLTKKDIS
LVIDLVYRHCGQKATVIFADQLMKLGFKYACSSGISFGMDDMVVPESKST
HINETQLEIKEFEQQYSNGLITYGEKYNKVVDAWSRCTDRVANDMMKEIA
TPPVSDDPNHQKINAIYMMAISGARGSFQQIKQLGGMRGLMTKSNGQIIQ
TPIISNFKEGLTEFECFNSANGMRKGQIDTALKTASSGYLTRKLVDVAQD
CIITEKDCGTDKGIEVKSVIEGGEVIVPLAEKILGRTAAIDIFHPVTNDL
ILNKGELINEAKLEQIESAGLDRIMIKSVLTCESTTGICSICYGRDLATG
TLVSEGEAIGVIAAQSIGEPGTQLTMRTFHIGGAATKGAEVSSVEASYDA
KVKIISRNVVINSEERKIVMSRNCELLLLDNNGNEKARHKIPYGARLLVD
DGDMVIKTQKLAEWDPYTIPIITEKSGKVLFKDMVEGISIRDVTDEATGI
PSKVIIESKQYSRGAELRPRIQLLDAKGEVIALSNGLEARYYLPVGAVLS
VEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAE
IDGRVEFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGD
LLIDGNPVLQDILKVMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIR
QMLQKVEITDSGGTTLLAGEKIDRHEFEEINEKAIKNGLKPAEAQLILQG
ITKASLQTRSFISAASFQETTRVLTEAAIAGKIDKLRGLKENVIVGRLVP
AGTGYFMDKMRKAAVKLDEENV
>RF_1357 rpoD, RNA polymerase sigma factor
MSNSNIDNDLDKIDSLLKKAKSKKIPVTYDDINKALPLNKNPSIRQLEEA
ILKFSDAGVDILESNEDDEIKLDIGMDEEFKLSTNVDNEPEDEVEEENIG
TTDDPVRLYLKDMGGVDLLTRENEVEIAKRIEEGRKTMTASLCKSPIAMR
CFIVWYEDLVNEKMLLRDLIDLEANMLHDETPENDEEHSSETEGEEHEDN
HLSMSRVETQILPNIIERMKKISFICEELLIEAKKCYEKSFEPKVLQNSK
KYNNNLELLINEVSEIHFNSKRTEEILGKMYGINRDLINKEIAFLKLAEK
YGVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMIAE
LSVIESNTGLLVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKK
YANRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAI
ADQARTIRIPVHMIETINKILRTSRQMLNELGYEPTATEIANRLSMPLDK
VRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPIDAAIQSNLRE
VTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIES
KALRKLQHPIRSKKLNSFRSGGKRGEGNPSDLLEA
>RF_0493 rpoH, RNA polymerase sigma-32 factor
MTNNINALAISSESGFYSYLQKINKIPSLTQEEEFLLAKSYLEENDLQAA
HKLVTSHLKLVAKIASGYRTYGLPITELVSEGNIGLMQAVKKFNPELGFR
LSTYAMWWIKAAIQEYILKSWSLVKMGTTAAQKKLFFSLNKIKHKITNLY
SRAITADDFIQIADELGVSVNEVSEMNTRISGPDLSLNNPINSDDAESGE
LIELLPETRPTPETIAINKQDSTGKRKLLSNAMKILNDRELRIFTERKLT
DTPKTLDILSNEYNISKERIRQIENTAFEKIKKFILNHSGQVA
>RF_0944 rpoZ, DNA-directed RNA polymerase omega chain
MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNQIKKEKRDKPPVI
SLRRIAAGKVSVEQLEQDLINSLRTKTMIEPIVNQDESEDIEEKFEYLPE
VCITEDYSDLDDQIFIDETGDDFEDK
>RF_0450 spoT1, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MTFMEDLSSWKEKFETCVYAKKLLDKIEYLNTKVKNPVDIEKIKKGIYYA
RKYHGLQMRQSGDPYYSHPIEVTIMLAEFVAEEAPKLYNAIMLQAALLHD
TIEDTELTEEMITAIFGLEVAKHVEGLTRVKPYGKISAEESLNLLVRQKR
YDTVLIKFFDRMHNLQTLGAKSPEKMRKVIEESLISFVKIAMYIEVHEIK
QQLIKLCYKNLGMDFNKPQIAFQDNFQLLSPIF
>RF_0968 spoT10, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MQVINNYLESCCYSEKLLGKISLLNKRNIALDYSKIKQAIYYAKKYHGNQ
KRKSGEPYYSHPLEVAYIILDWSLDSDVIIAALLHDTVEDTEFTLEKITF
LFNHNISQLVSKVTKLNDSINIYRLTEEEIILKLTSGKQSQKAILIKLVD
RLHNLRTIKYMPPLKQIKKAKETLRIYVPLAKYLGIKAIEQELIELAVSI
LQHH
>RF_0204 spoT11, Guanosine polyphosphate pyrophosphohydrolases/synthetases-like protein
MICDIINLLKEDLNKADIENEIYMRLKEPYSVLKKMKRKEVPVDGLKDLI
ACRIIVKSKALCYNALDVVKSSPHLDWLYTKDYINRPKSNGYQSLHNIMQ
LLHSKRNFEIQIRSEDMHKDAELGRAAHLNYKEEQDRHLKKVFDVSNDTI
LSKARQMVKQFEGLEEQIVEYEKEIMRIWDTKYDEMLKWENTAEVLIFNE
E
>RF_0410 spoT12, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MLQRVIKHLNHNLSEHDITAQITGRIKHPISILYKLYRKGIKLEELTDIF
AIRIVVIDEEKCYKALKVVHDLYEHEKDKFKNYILNPKPNGYQSLHTIIT
TEDNYKIEIQIRDHKMHYHAESGEAAHWKYKETL
>RF_0381 spoT13, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MLYQNITNNSCINQALELYHKYCYDKTTYPDQIHTITKALQLDSSSFTAV
LLHENIQHLNLEDYNHFNNNIIYLVDVINKLSTIHYKPYAEQYIHFHELL
LTINPKLQETAILTSLVPLLHKVSIFNLEYNNTNAQHISEIITNCYIPYL
LSYTAHNDLAYLLQDLCFKIQYPEERNRILHYMYWLYPDIDNIIHNIEQQ
FGNIFRKLNIKASLSYRIKSPYSIWIKTLVKDIHITALNDILAFRAIVPN
KKACYDVSKLIHLHYNTITSQFVDYIRYPKNNGYQSIHLVISGGNKGNIE
LQIRSTTMHRQTQYGSAHHTYKVNKYYVSRTNNNVSVVLFNITLSYSNRI
LSVYVSIVTITSTINNNLYTDYNTIPSFTQYTQHSTNFVDNDITTCTLSR
TTTPEYITYYNNNLSLLIKDTNTIPYNFFLNINLNLSNTVEYKLVPLAVV
QIPASNLLFEHNSVFINITYKPILAECAFPATITYTKRHEDSNIRSIFKL
FEHNSVFINITYKPILAECAFPATITYTKRHEDSNIRSIFKPPSPTYNTL
LATINDKVVLEQYGQKEFLSTTINTNITQMLPIITLLVDPSELNKRINDI
SDSNKDQLLRLGLQLGCVESVPLLITHGANPNATNCHGVISLHCAAKNGN
LDLAKLLAKNGADVNAKTDNGETVLHYAVKSGNLHLVKWLIENQANIHAK
TDNGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNL
DLVSLLISHGADVNAKTNSGETILYSAVDYGSPDLVYLLIAYGADVNAKT
DNGETVLHYAVESGNLDLVSLLIHNGANVNNAKTILHFAAKSGNLNLVNW
LIKNKADIHAKTNSGETILHFAAESGNLNLVNWLIKNKADIHAKTNSGET
ILHFAAKSGNLNLVNWLIKNKADIHAKTNSGETILHFAAKSGNLNLVNWL
IKNKADIHAKTNSGETILHFAAESGNLNLVSLLIHNGTDINTKTDDGLTA
LHYAVESGNLNLVSLLIHKGIDVNAKTNSGETILHFAVDLGSLDLVSLLM
VRGADVNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKNNSGETPL
HYAVIFNSLDLVSLLIHNGADINTKNNSGETVLNSIMEFNNCNILKSFIL
GGADINLETMLPDDQTDSIINLCGDLRIS
>RF_0384 spoT15, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MKKIEGYQTNFEICIYAKKLLDKVIYLNSVVKVPPVSVLEVKKAIYYAKK
YHGSQMRQSGEPFYSHPIEVAYMISDYLFRTDVIVTSILHDTIEDTELTK
EEVAEEFGWKVASQVMDLTRIKENGIKISSAEMVEMLYKEKKHDILLIKL
FDRLHNIQTIGAKSPEKAKKIITETLISFIVLMPYLGISSLEKHFYRLCL
NATHQNRLKENTLFTNNLRKFWSYFKHNTEAINII
>RF_0508 spoT2, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MGDFMKDIEYWEKNFESCKYSNKLIERLLFFNTQVKQPVDIREVKKGIYY
ARKYHGEQMRQSGDPYYSHPIAVTIMVAEFVAKEVPKLFTFRMLQAALLH
DTIEDTELTEEMISNIFDEEVARHVEGLTRIKPCGKISSEKSLILLIKQE
RYDTALIKLFDRIHNLQTLEAKSPEKAHKIIKETLKSFLVLSEILEIPSV
SELIYAECYKNNLKFNINSTFNKIINFDSFPFSQNKLLP
>RF_0953 spoT3, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MEDISSWKEKFEICVYSKKLLDKLEYLNTKVENPIDILEIKKGIYYARKY
HGSQMRQSGDPYYSHPIEVAIMLAEFVAEEAPKLYNVIMLQATLLHDTIE
DTELTEEAITEIFGSEVAKHVEGLTRIKSYGKISSGESLNLLIKEKRYNT
ALIKLFDQIHNVQTLGVKSPEKARKIIEETLINFLLVTANINYKLEREFA
ELCLKVFNIELERQKTFSNNNSLLPPLTL
>RF_0305 spoT5, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MKDISSWKEKFEVCVYAKKLLDKLEDLNTKVKNPVDIEEVKKGIYYARKY
HGSQMRQSGDPYYSHPIEVTIMLAEFVAEEVPKLFTTIMLQAALLHDTIE
DTELTEEMINDIFGAEVAVNTGRKMIQIFNKHRLKNDTVS
>RF_0380 spoT6, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MCCSQNRIITSKRSQYIPFRTKPFRTDIIVTSILHDCIEDTLLTKEMIVK
EFGYKIANQVEDLTRVKNDKKISSAEIVKILYQQKKKELLLIKLFGRLHN
IQTVGAKIPEKGWKTILETLQSFLTIATYLKVPRVARQLYTHCLNIAANY
KKLNVLRVLQDKIFISE
>RF_0438 spoT7, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MKDLSSWKEKFEVCVYAKKLLDKLEYLNTKVKNPVDIEEVKKGIYYARKY
HGSQMRQSGDPYYSHPIEVAYMFVQFVAEEAPKLYNAIMLQAALLHDTIE
DTELTEEVITTIFGLEVAKHVEGLTRVKPYGKITAKESLNLLIKQKRYNI
ALIKLFDRIHNVQTLGAKSLEKAQKIIEETITDFLVVAARLEIHSIEEKL
FNICNEFIKGNKTKTIIKFDAHCSFLNSQSDAARNNSLLLPVS
>RF_0440 spoT8, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MKDLSSWKEKFEVCVYAKKLLDKLEYLNTKVKNPVDIEEVKKGIYYARKY
HGSQMRQSGDPYYSHPIEVAYLLAHYAALKLSNFFRTDLLIAALLHDTLE
DTSLKKEEIEVIFNKNVAHYVESLTRVKIDTKISAAETVILLHKQKNDGV
LLIKLCDRLHNMQTINAKNPEKIKKIKEETINYFILLAGYLGIPQIEYEL
LELCSITQKRFKNSERRGAIKDNYQPLFQAFQNDLYSI
>RF_0884 spoT9, Guanosine polyphosphate pyrophosphohydrolases/synthetases homolog
MEDISSWKEKFEFCVYAKKLLDKLEYLNTKVKKTVDLEEIKKGIYYARKY
HGSQMRQSGDPYYSHPIEVAIMLAVFVAEEAPKLYTSNMINAALLHDTIE
DTELTEEVITAIFGLEVANHVEGLTRIKPYGKISAEESLNLLIQQKRYDT
ALIKLFDRIHNIQTLGAKSPEKAKKIIEETLITFTTFSVYIEIPKITQHI
INLCYQGLAITPPVNQEQDIFSF