Gene list
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COG category: Transcription
Organism: Thermotoga maritima MSB8, MSB8
Number of genes found: 87
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| Thermotoga maritima MSB8, MSB8 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | TM0534 | RNA polymerase sigma-H factor, putative | SubName: Full=RNA polymerase sigma-H factor, putative; SubName: Full=RNA polymerase sigma70 factor; SubName: Full=RNA polymerase sporulation specific sigma factor SigH; | chromosome | CDS | 559501 | 582 | + | 0.429553 |
| NA | TM1102 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 1118697 | 723 | + | 0.46888 |
| NA | TM0110 | transcriptional regulator, XylR-related | SubName: Full=ROK family transcriptional regulator; SubName: Full=Transcriptional regulator, XylR-related; SubName: Full=Xylose repressor XylR (ROK family); | chromosome | CDS | 115866 | 1137 | + | 0.437115 |
| NA | TM0453 | N utilization substance protein G | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 474858 | 1065 | + | 0.442254 |
| NA | TM1777 | N utilization substance protein A | SubName: Full=N utilization substance protein A; SubName: Full=Transcription elongation factor NusA; SubName: Full=Transcription termination protein NusA; | chromosome | CDS | 1754024 | 1035 | - | 0.491787 |
| NA | TM1847 | ROK family protein | SubName: Full=ROK family protein; | chromosome | CDS | 1827011 | 777 | - | 0.454311 |
| NA | TM1423 | hypothetical protein | SubName: Full=Sporulation stage II, protein E; SubName: Full=Stage II sporulation protein; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1437317 | 1140 | + | 0.463158 |
| NA | TM0902 | RNA polymerase sigma-28 factor, putative | SubName: Full=RNA polymerase sigma-28 factor, putative; SubName: Full=RNA polymerase sigma70; | chromosome | CDS | 921425 | 663 | - | 0.438914 |
| NA | TM1005 | transcriptional regulator, putative | SubName: Full=AraC family transcriptional regulator; SubName: Full=Transcriptional regulator, putative; | chromosome | CDS | 1022635 | 900 | - | 0.468889 |
| NA | TM1699 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1677433 | 1677 | + | 0.462135 |
| NA | TM0978 | conserved hypothetical protein | SubName: Full=ArsR family transcriptional regulator; SubName: Full=UPF0033 protein; SubName: Full=Uncharacterized protein; | chromosome | CDS | 990772 | 555 | - | 0.472072 |
| NA | TM1355 | hypothetical protein | SubName: Full=DRTGG domain-containing protein; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1373913 | 351 | - | 0.467236 |
| NA | TM1527 | conserved hypothetical protein | SubName: Full=Rrf2 family transcriptional regulator; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1522726 | 423 | - | 0.423168 |
| NA | TM0729 | (p)ppGpp synthetase | SubName: Full=(P)ppGpp synthetase; | chromosome | CDS | 753153 | 2256 | + | 0.452571 |
| NA | TM0275 | transcriptional regulator, GntR family | SubName: Full=GntR family transcriptional regulator; SubName: Full=Transcriptional regulator, GntR family; SubName: Full=Transcriptional repressor of the arabinose operon; | chromosome | CDS | 288748 | 1023 | + | 0.438905 |
| NA | TM0467 | regulatory protein, putative | SubName: Full=Regulatory protein; SubName: Full=Regulatory protein, putative; SubName: Full=Serine phosphatase RsbU, regulator of sigma subunit; | chromosome | CDS | 495388 | 1338 | - | 0.430493 |
| NA | TM1228 | transcriptional regulator, RpiR family | SubName: Full=Putative regulator for cell wall polysaccharide synthesis gene cluster, RpiR family; SubName: Full=RpiR family transcriptional regulator; SubName: Full=Transcriptional regulator, RpiR family; | chromosome | CDS | 1253824 | 801 | - | 0.500624 |
| NA | TM1330 | lacI family transcriptional regulator, putative | SubName: Full=LacI family transcriptional regulator, putative; | chromosome | CDS | 1350067 | 336 | + | 0.407738 |
| NA | TM0949 | transcriptional regulator, LacI family | SubName: Full=LacI family transcriptional regulator; SubName: Full=Ribose operon repressor; SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 964978 | 999 | - | 0.393393 |
| NA | TM0710 | transcriptional regulator, MarR family | SubName: Full=MarR family transcriptional regulator; SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 732466 | 432 | + | 0.469907 |
| NA | TM0459 | DNA-directed RNA polymerase, beta' subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 482201 | 5073 | + | 0.475853 |
| NA | TM1024 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1043096 | 462 | + | 0.437229 |
| NA | TM1683 | cold shock protein | RecName: Full=Cold shock-like protein; | chromosome | CDS | 1664784 | 201 | + | 0.487562 |
| NA | TM1469 | glucokinase | SubName: Full=Glucokinase; | chromosome | CDS | 1481349 | 954 | - | 0.505241 |
| NA | TM1765 | N utilization substance protein B | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 1741617 | 429 | + | 0.435897 |
| NA | TM1655 | response regulator DrrA | SubName: Full=Response regulator DrrA; | chromosome | CDS | 1644632 | 744 | - | 0.478495 |
| NA | TM1030 | transcriptional regulator, TetR family | SubName: Full=TetR family transcriptional regulator; SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1047908 | 603 | + | 0.422886 |
| NA | TM1856 | transcriptional regulator, LacI family | SubName: Full=LacI family transcriptional regulator; SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 1838925 | 987 | - | 0.416413 |
| NA | TM0458 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 478393 | 3792 | + | 0.468618 |
| NA | TM0656 | conserved hypothetical protein | SubName: Full=Transcriptional regulator, MerR family, near polyamine transporter; SubName: Full=Uncharacterized protein; SubName: Full=XRE family transcriptional regulator; | chromosome | CDS | 687450 | 531 | - | 0.461394 |
| NA | TM0577 | conserved hypothetical protein | SubName: Full=Acetyltransferase; EC=2.3.1.-; SubName: Full=Uncharacterized protein; | chromosome | CDS | 610023 | 540 | - | 0.474074 |
| NA | TM1598 | RNA polymerase sigma-E factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1589074 | 570 | + | 0.433333 |
| NA | TM1156 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1170125 | 390 | + | 0.476923 |
| NA | TM0808 | transcriptional regulator, XylR-related | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Regulator of chitobiose utilization ChiR, ROK family; SubName: Full=Transcriptional regulator, XylR-related; | chromosome | CDS | 831309 | 1068 | + | 0.458802 |
| NA | TM0399 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 419448 | 678 | + | 0.448378 |
| NA | TM0494 | conserved hypothetical protein | SubName: Full=Segregation and condensation protein B; SubName: Full=Uncharacterized protein; | chromosome | CDS | 522764 | 504 | + | 0.456349 |
| NA | TM1706 | transcription elongation factor, greA/greB family | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 1686563 | 471 | - | 0.467091 |
| NA | TM0823 | transcriptional regulator, TetR family | SubName: Full=TetR family transcriptional regulator; SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 849793 | 573 | - | 0.445026 |
| NA | TM0065 | transcriptional regulator, IclR family | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Transcriptional regulator, IclR family; | chromosome | CDS | 65880 | 741 | + | 0.417004 |
| NA | TM1224 | transcriptional regulator, XylR-related | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Putative regulator of mannose and mannoside utilization, ROK family; SubName: Full=Transcriptional regulator, XylR-related; | chromosome | CDS | 1247818 | 1107 | - | 0.457091 |
| NA | TM1472 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1484047 | 1011 | - | 0.430267 |
| NA | TM1688 | hypothetical protein | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 1668060 | 240 | - | 0.45 |
| NA | TM0186 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 199501 | 1107 | - | 0.485095 |
| NA | TM0363 | fibronectin-binding protein, putative | SubName: Full=Fibronectin-binding protein; SubName: Full=Fibronectin-binding protein, putative; SubName: Full=Fibronectin/fibrinogen-binding protein; | chromosome | CDS | 380379 | 1650 | + | 0.450909 |
| NA | TM0439 | transcriptional regulator, GntR family | SubName: Full=GntR family transcriptional regulator; SubName: Full=Putative regulator for galacturonate utilization; SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 460888 | 645 | + | 0.409302 |
| NA | TM0286 | conserved hypothetical protein | SubName: Full=PadR family transcriptional regulator; SubName: Full=Transcriptional regulator, PadR family; SubName: Full=Uncharacterized protein; | chromosome | CDS | 302701 | 453 | + | 0.417219 |
| NA | TM0393 | transcriptional regulator, XylR-related | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Regulator of trehalose utilization, ROK family; SubName: Full=Transcriptional regulator, XylR-related; | chromosome | CDS | 412805 | 1116 | + | 0.463262 |
| NA | TM1470 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 1482310 | 1284 | - | 0.445483 |
| NA | TM0085 | hypothetical protein | SubName: Full=Anti-sigma-28 factor, FlgM; SubName: Full=Uncharacterized protein; | chromosome | CDS | 88715 | 282 | - | 0.425532 |
| NA | TM0126 | response regulator | SubName: Full=Response regulator; SubName: Full=Transcriptional regulator; | chromosome | CDS | 132801 | 663 | + | 0.461538 |
| NA | TM0883 | conserved hypothetical protein | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 905791 | 741 | + | 0.48448 |
| NA | TM1450 | transcription-repair coupling factor, putative | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1465252 | 2682 | + | 0.452647 |
| NA | TM1176 | transcriptional regulator, metal-sensing | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Transcriptional regulator, metal-sensing; | chromosome | CDS | 1191269 | 270 | - | 0.462963 |
| NA | TM0032 | transcriptional regulator, XylR-related | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Cellobiose-responsive regulator of beta-glucosides utilization, ROK family; SubName: Full=Transcriptional regulator, XylR-related; | chromosome | CDS | 31324 | 1146 | - | 0.406632 |
| NA | TM1103 | conserved hypothetical protein | SubName: Full=Oxygen-independent coproporphyrinogen III oxidase; EC=1.-.-.-; SubName: Full=Radical SAM protein; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1119416 | 954 | + | 0.476939 |
| NA | TM0766 | transcriptional regulator, GntR family | SubName: Full=GntR family transcriptional regulator; SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 792240 | 366 | - | 0.464481 |
| NA | TM0722 | vacB protein | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; AltName: Full=VacB protein homolog; | chromosome | CDS | 744924 | 2133 | + | 0.467886 |
| NA | TM1431 | glycerol uptake operon antiterminator | SubName: Full=Glycerol uptake operon antiterminator; SubName: Full=Glycerol uptake operon antiterminator regulatory protein; | chromosome | CDS | 1447585 | 588 | + | 0.382653 |
| NA | TM1147 | conserved hypothetical protein | SubName: Full=Metal-dependent phosphohydrolase; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1160121 | 1164 | + | 0.431271 |
| NA | TM0649 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 681943 | 489 | + | 0.427403 |
| NA | TM0990 | conserved hypothetical protein | SubName: Full=Helicase; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1006897 | 2904 | + | 0.411157 |
| NA | TM1707 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 1687030 | 471 | - | 0.44586 |
| NA | TM1451 | RNA polymerase sigma-A factor | RecName: Full=RNA polymerase sigma factor SigA; AltName: Full=Sigma-A; | chromosome | CDS | 1467949 | 1200 | - | 0.455833 |
| NA | TM1082 | lexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 1096918 | 594 | - | 0.47138 |
| NA | TM1200 | transcriptional regulator, LacI family | SubName: Full=LacI family transcription regulator; SubName: Full=Maltose operon transcriptional repressor MalR, LacI family; SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 1222002 | 1002 | - | 0.446108 |
| NA | TM0602 | iron-dependent transcriptional repressor, putative | SubName: Full=DNA-binding protein; SubName: Full=Iron-dependent transcriptional repressor, putative; | chromosome | CDS | 637393 | 456 | + | 0.467105 |
| NA | TM1720 | conserved hypothetical protein | SubName: Full=Acetyltransferase; SubName: Full=GNAT family acetyltransferase YjcF; SubName: Full=Uncharacterized protein; | chromosome | CDS | 1697744 | 435 | - | 0.457471 |
| NA | TM0326 | transcriptional regulator, RpiR family | RecName: Full=Uncharacterized HTH-type transcriptional regulator TM_0326; | chromosome | CDS | 346522 | 843 | + | 0.436536 |
| NA | TM1069 | transcriptional regulator, DeoR family | SubName: Full=DeoR family transcriptional regulator; SubName: Full=Transcriptional regulator of rhamnose utilization, DeoR family; SubName: Full=Transcriptional regulator, DeoR family; | chromosome | CDS | 1085098 | 759 | - | 0.426877 |
| NA | TM0205 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; | chromosome | CDS | 219685 | 2343 | - | 0.480154 |
| NA | TM1866 | membrane bound protein LytR, putative | SubName: Full=Membrane bound protein LytR, putative; | chromosome | CDS | 1847349 | 1374 | - | 0.429403 |
| NA | TM0937 | conserved hypothetical protein | SubName: Full=PadR family transcriptional regulator; SubName: Full=Transcriptional regulator, PadR family; SubName: Full=Uncharacterized protein; | chromosome | CDS | 953907 | 357 | - | 0.495798 |
| NA | TM1436 | glycerol uptake operon antiterminator-related protein | SubName: Full=Antiterminator; SubName: Full=Glycerol uptake operon antiterminator regulatory protein; SubName: Full=Glycerol uptake operon antiterminator-related protein; | chromosome | CDS | 1451621 | 531 | - | 0.46516 |
| NA | TM1218 | transcriptional regulator, LacI family | SubName: Full=LacI family transcriptional regulator; SubName: Full=Putative regulator of mannoside utilization, LacI family; SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 1241205 | 987 | - | 0.472138 |
| NA | TM0851 | heat shock operon repressor HrcA | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 876015 | 1017 | - | 0.429695 |
| NA | TM0816 | transcriptional regulator, putative, Mar family | SubName: Full=MarR family transcriptional regulator; SubName: Full=Transcriptional regulator, MarR family; SubName: Full=Transcriptional regulator, putative, Mar family; | chromosome | CDS | 840426 | 429 | + | 0.463869 |
| NA | TM1131 | aminotransferase, putative | SubName: Full=Aminotransferase, putative; | chromosome | CDS | 1143191 | 1242 | - | 0.487923 |
| NA | TM0299 | transcriptional regulator, LacI family | SubName: Full=LacI family transcription regulator; SubName: Full=Putative xyloglucan oligosaccharides-responsive regulator, LacI family; SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 316980 | 1035 | - | 0.383575 |
| NA | TM0490 | regulatory protein, SIR2 family | RecName: Full=NAD-dependent protein deacetylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; Short=Sir2Tm; | chromosome | CDS | 519723 | 741 | - | 0.469636 |
| NA | TM0567 | conserved hypothetical protein | SubName: Full=Rrf2 family transcriptional regulator; SubName: Full=Uncharacterized protein; | chromosome | CDS | 596585 | 414 | - | 0.461353 |
| NA | TM0998 | heavy metal resistance transcriptional regulator | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Heavy metal resistance transcriptional regulator; SubName: Full=Regulatory protein, ArsR; | chromosome | CDS | 1018463 | 327 | - | 0.412844 |
| NA | TM1259 | phosphate regulon transcriptional regulatory protein PhoB | SubName: Full=Phosphate regulon transcriptional regulatory protein PhoB; | chromosome | CDS | 1286287 | 690 | - | 0.486957 |
| NA | TM0369 | conserved hypothetical protein | SubName: Full=Transcriptional regulator; SubName: Full=Uncharacterized protein; | chromosome | CDS | 387244 | 444 | - | 0.475225 |
| NA | TM1874 | cold shock protein | SubName: Full=Cold shock protein; SubName: Full=Cold shock protein CspA; SubName: Full=Cold-shock protein; | chromosome | CDS | 1855678 | 201 | + | 0.477612 |
| NA | TM0371 | arginine repressor | RecName: Full=Arginine repressor; | chromosome | CDS | 388584 | 459 | + | 0.431373 |
| NA | TM0411 | transcriptional regulator, XylR-related | SubName: Full=ArsR family transcriptional regulator; SubName: Full=Regulator of myo-inositol utilization InoR, ROK family; SubName: Full=Transcriptional regulator, XylR-related; | chromosome | CDS | 428777 | 1152 | + | 0.449653 |
| NA | TM0510 | iron-dependent transcriptional repressor, putative | SubName: Full=Fur family transcriptional regulator; SubName: Full=Iron-dependent transcriptional repressor, putative; | chromosome | CDS | 537027 | 519 | - | 0.466281 |
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