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# Candidatus Blochmannia pennsylvanicus str. BPEN, BPEN

>BPEN_640 putative transcriptional regulator protein (MarR family)
MNRLTDISNMVESLSRIYHRLRKEINGQLINEGLSMSKMKILHLITTGKT
SATDIKNYMGFSSRTVVTVLDALEKDEMLRRQQSLTDRRVKYVYITEKGR
DKLRVAEDTHNIILDRIFSLLSDVQLKSFREVCNLLEIQQKNNMAK
>BPEN_462 cspC, cold shock-like protein
MAKIKGQVKWFNESKGFGFITPSDGSKDVFVHFSAIQGNGFKTLSEGQSV
EFEIQDGHKGPSAVNVTAL
>BPEN_113 deaD, cold-shock DeaD box ATP-dependent RNA helicase
MSKTVDSFIDLGLNRYIVNVLHDVGYTKPLPIQIQCIPYLLAGYDVLGMA
HTGSGKTAAFVLPLLHNVDINNSCSQGLIITPTRELAIQIGRVCSNFAKY
MKKINVVTLYGGQSYGIQLSALNKRPHIIVSTPGRLIDHLNRGTANLSQL
KTLVIDEADEMLRMGFLEDVERIIKNIPVKRQTALFSATLPMGIRRISYR
FMNNPKEVFIHSNTSMCANIRQSYWLVHSGIAKHEALMRFLETEDFDAAI
VFVRTKYATLEISEILERFGYNSAALNGDMNQTVRHQTLDRLRHGKLDIL
IATDVAARGLDVHRISLVINYDIPINSDAYIHRIGRTGRAGCMGKSLLFV
EHKEYRLLRHIERKIKLKIPEVQYPTSETLFDCRLSRFTNKVEYQLSTEN
DDLDVYRSLLPQIKPRRDLTTENLAAVLLKIAQGNRPLVFPPDPIIKNKS
VSKIRINSNRQNCFRVENRVIKTRLQSKISDNMDAYHISVGRNDGVKIRH
IIRVLSNNIANIRYHEIGNIKLFSFHAIIELDKGLSSNKILTQLSHARIL
NKPINMKFLGNMSSCNDVH
>BPEN_099 greA, transcription elongation factor
MKRIPMTLRGAEKLREELDYLRNVLRPEIIKNISEAREHGDLKENAEYHA
AREQQGFCEGRIQEIESKLFNAHIIDITKLTTDDKVVFGATVGVENLDTT
YRQTYSIVGDDEANLKEHMISINSPIARGLIGHKEGDIVRINTPKGKVRY
KILQVKYC
>BPEN_403 mntR, transcriptional regulator of mntH, Mn(2+) responsive
MTKNEEVLSSNLACFKKKTNNLQGFIQVRAAHRRELIDDYIELIADLIQE
RGEARQVDLALRLGVTQPTVAKMLKKLIASSLIKHKRYCGVSLTKQGRQL
AYENHIRHKIVKTFLIDLGINKKIAQRDAEGIEHHVSNETLLAFIQFSKR
FNK
>BPEN_107 nusA, L factor
MNKEILAVIEAVSNEKAVPQEKIFEALETALAAATKKKYEQDVEVRVVID
RKSGQINTFRRWVVVEQVTQPTKEITLDAARFENPKVQICDYVEDVIESI
SFDRITTQTAKQVIVQKVREAERAIIIEQFLNRQGDIVTGIVKKINRDSI
SIDLGNNAEGMINREEMLPRENFRLGDRIRGILYLVRPDFKGPQLLISRT
RTEMLIELFRIEVPEIGEELITIKAAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSGELGGERVDVILWDDNPVQFVINAMSPADVASIVIDE
DKHTMDISVEETNLPQAIGRNGQNIRLVSQLSGWELNIMTVDELEKKRQV
EICTITNIFIHSLNISEQFAKILIDSGFSSLEELAYVPMTELLSIKEFDR
KTVEIIRDRAKSALKNFSVIHNEKNIKEDNYTAAVIHPVTGLLRLPNIEY
KLALTLVERGISTLEELAEQDISDLSDIEGLTKEKIGELIMEARNICWFN
NDNKH
>BPEN_242 nusB, L factor
MKAISRRRARECTLQALYSWQVSKNDVKEIERYVVTEQDIQDCNISYFHE
LYIGVISCAEELDKLMIPHLSRNLEKLGYIEHSVLRIALFELTKCNDIPY
KVAINEAIELVKIFGAEKSHKFINGVLDKIANQLCVSTNNHIIK
>BPEN_582 nusG, transcription antitermination protein
MTVTSKKRWYVIQAFSGFENRVAHSLREHIKLHNMDTMFGEIMVPTEEVV
EMRAGQRRKSERKFFPGYVLVQMIMNDSSWHLVKSVPRVMGFVGGTCDKP
APIGDKEVNDIMHRLQQIGDKPRPKTLFEPGELIRVSDGPFSDFNAVVEE
VDYEKNRLKVSVSIFGRATPVELDFSQVEKS
>BPEN_607 rho, transcription termination factor Rho
MNLTKLKNIPVSELVHLGESMGLENLARMRKQDIIFAIFKQHAKTGEDIF
GDGVLEILQDGFGFLRSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK
IRPPKEGERYFALLKVNDVNYDKPENARNKILFENLTPLHANSRLRMERG
NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTILLQNIAQSISHNHP
DCVSIVLLIDERPEEVTEMQRLVHGEVIASTFDEPASRHVQVSEMVIEKA
KRLVEHKKDVIILLDSITRLARAYNTIVPSSGKVLTGGVDANALHRPKRF
FGAARNMEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIA
EKRVFPAIDYNRSGTRKEELLTTQDELQKIWILRKIIHPMSEIDAMEFMM
NKLSMTKTNDEFFDMMKRC
>BPEN_560 rnc, RNase III
MLVNALQEKLGYIFNRYDLLLQALTHRSSSNQHNERLEFLGDAILNYVIA
NLLYHRFPHISEGGMSRMRANLVRENTLATLAREFNLGDYLQLGQGELKS
GGYQRESILANTIEALIGGIFLDSNIQTIEILIINWYKIRIDHMDPYASY
DTQKDPKTRLQEYMQRRRLPLPVYWINQIIGEAHNQIFTINCQVSELTQP
IIGCGSSRRRAEQNAAAKVLEALEHNQNI
>BPEN_223 rpoA, RNA polymerase, alpha subunit
MQNSVIEFLKPRLVDIEQITETRAKVTLEPLERGFGHTLGNALRRILLSS
MPGYAITEVEIDGVLHEYSTKEGIQEDVLEILLNLKKLAIRIEGKDSVTL
TLKKSGIGPVIANDILYDSNSVKIVTPNHIICHITDKNTSISMSIKVQRG
RGYVPASSRFHSESDILPIGRLLLDACYSPVERISYNVEAARVEQRTDLD
KLIIDMETDGTIEPEEAIRRAATILSEQLEAFIDLRDIHQPEHKEEKPEF
DPILLRLVDDLELTVRSANCLKAESIHYIGDLVQRTEIELLKTPNLGKKS
LTEIKDVLASRGLSLGTRLENWPPTNILDN
>BPEN_577 rpoB, DNA-directed RNA polymerase, beta-subunit
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQIDSFQKFIKQDPEEPCGLE
AAFRSVFPIKSYNGNAELQYIKYQLGEPTFDVKECQTRGATFSAPLRVRL
CLIIYEREGLNNIIKNTKEQEVYMGEIPLMTNNGTFIINGIERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDLKDNLFVRIDR
RRKLPVTVILRALNYTTDQILNIFFNKVIYEIQNNTLYMHLIPERLRGET
ASFDIAVNGVIYVKKGRRIAAKHIRQLKKDKISKIEVPMDYIIGKVVIKD
YFDKNTNIPIVTANTEISSDILHNLIRSGYESIETLFSNDLDYGNYISET
LRIDATTNKFDALVEIYRVMRPGEPPTKEAAEYLFENLFFSEERYDLSSV
GRMKFNRSLQRVQIEDLGTLKKDDIVDVIKKLIDIRNGKGEVDDIDHLGN
RRIRSVGEMAENQFRIGLVRVERAVKERLSLGDLDVLTPQDLINAKPISA
AVREFFTSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRVCPIETPEGPNIGLINSLSVYARANKYGFLETPYRKVQNGVVS
NDIHYLSAIEEGDFVIAQANTNLNSIGEFIDDLVTCRNKGESGLFKKDQV
DYMDVSTQQIVSVAASLIPFLEHDDANRALMGANMQRQAVPVLCSEKPLV
GTGMERAVAIDSGVTVVAKRGGVIKYVDASRIVIHVNKNETHTEESGIDI
YQLTKYIRSNQNTCINQRPCVSLGELVEHGDVIADGPSTDLGELALGQNM
RIAFMPWNGYNFEDSMLVSERVVQEDKFTSIHIQELTCVSRDTKLGPEEI
TADIPNVGETALSKLDESGIIYIGAEVIGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVCGTVIDVQIFTRDGINKDKRSLIIES
EKLKQVKKDLSEELQIFESALFDRVCDVLMTSGIDKKKLFETSRNAWLDL
VLSDPEKQYQLSQLTKQYFDLKRMFEKKLEIQHRKITQGDELAPGILKIV
KVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDQHGIPVDIVLNP
LGVPSRMNIGQILETHLGMAAKGIGDKINFMLQQHKEANQLRRFMQQAYN
LGEGSRQHINLNSFSDIEILKLAKNLKKGMPIATPVFDGATEKEIKDLLK
LSGLPSSGQITLFDGCTGEAFERQVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNG
RTKMYKNIVDGNHMMEPGMPESFNVLLKEIRSLAINIELED
>BPEN_576 rpoC, DNA-directed RNA polymerase, beta-prime-subunit
MKDLLRFFKIQHTQIEEFNAIKIALASPDMIRSWSFGEVKKPETINYRTF
KPERDGLFCARIFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQSKVRR
ERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVVES
GMTSLECRQVLTEEEYLDALEEFGDEFEAKMGAEAIQILLRNTNLKNECE
YLREILEDSHSETKRKKITKRIKLIEAFIYSENKPEWMVLNVLPVLPPDL
RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPEIIVRNEKRML
QEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY
SGRSVITVGPYLKLHQCGLPKKMALELFKPFIYGKLELQGFASTIKAAKK
MVDREEAVVWDILDNVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQL
HPLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPI
IVPSQDVVLGLYYMTRERSNAKGEGMVLTGPKEAECLYRLGLADLHARIK
IRITEYEYDKNGEWSKKTNLVNSTIGRSILWMIVPKGLPFILVNQVLGKK
AISTMLNNCYRLLGMKATVILADQIMYTGFAYAARSGASVGIDDMMIPSK
KADIIDEAESEVVEIQEQFQTGLVTAGERYNKVIDIWAAANERVAQAMMD
NLATETVMNRNGQLENQASFNNIFMMADSGARGSAAQIRQLAGMRGLMAK
PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR
LVDVAQDLVITQDDCDTFSGIVMSPVIEGGDVKEPLRERVLGRVLAEDIL
ESNADTDSKVLIVRNTLLDEYWCDVLDEHSIDTVKVRSVVTCDTDFGVCS
KCYGRDLARGQIVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAL
ESSIQIKNTGTVCLKNIKSVINGEGKLVVISRNTELKIIDQFSRTKESYK
VPYGAVITKKNEEKVIHGEIVAYWDPHTMPVIAEVSGFIQFIDLIDGQSI
VKQTDELTGLTSIVVLDTSERVSSAKDLRPTLKIVDINGYDIFIPGTDVP
VQYFLPGRSVVQLVDGSRIICGDILARLPHESSGTKDITGGLPRVADLFE
ARRPKESAILAEISGTISFGKETKGKRRLMISPIEDGDVYEEMIPKWRHL
NVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGV
KINDKHIEVIVRQMLRKATVIRSGSSDFLVGEQVEYSRIKIANRKLENEG
KVKISFIRNLLGITKASLATESFISAASFQETTRVLTESSVAGKRDELRG
LKENVIVGRLIPAGTGYSYHQERVHHRHFSNKKETEKSVITNISSQITAD
EASANLTELLNATSPK
>BPEN_057 rpoD, RNA polymerase sigma-70 factor
MEHNPQSQLKLLVTLGKEQGYLTFSEVNDHLPEDIVDPGQIENIIQMMND
MGIQVMEEAPNSDEFLLIEHTHSTNDEEDATEAAVQALTNVDSELGRTTD
PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVSEYPEAITYLLE
QYKRVETGETRLSDLITGFVDPDINENISIHTNINHITAEVTTESISDDD
EEENNDENNIDPEIAYVKFTALRNQYDITRKTIKYNGRNHIKSSKEILKL
SEIFKQFRLVPKQFDYLVNNMRSMMERVRKQERLIMKLCVEISKMPKKNF
IALFSGNQTNKTWFNTALSMHTSWSEKLYKVDEDVQNSLSKLHQIEKETG
LTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFL
DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
PVHMIETINKLNRVSRQMLQEIGHEPTPEELAERMLMSEDKIRKVLKIAK
EPISMETPVGDDEDSHLGDFIEDTNHDLPLDSATSDNLRTATHDILSGLT
PREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPS
RSEILRSFLDD
>BPEN_653 rpoH, RNA polymerase sigma-32 factor
MPKYIQKNVTLIPQGNLEAYIKVANAYTMLTAEEEKTLAKRLYYNGDLDA
AKKLIVSHLRFVVHVSRNYSGYGLPQADLIQEGNIGLMKAVRRFNPELDV
RLVSFAVHWIKSEIHEYVLKNWRIVKIATTKAQRKLFFNLRKTKQRLGWF
NAGEIEIVAKALNVTSKDVREMESRMSAQDMTFEQSSDEDNRGITIAPIL
YLQDKIVSSNEEEEWIDQVSDKLNAAIKTLDERSQHIIRARWLNVDNKST
LQELANQYGVSAERVRQLEKNAMKKMKLIIQN
>BPEN_642 rpoZ, DNA-directed RNA polymerase, subunit K/omega
MARITVQDAVEKVGNIFDLILVAARRARQMQIGGKETLITKNNNDKYTVL
ALREIEEDLITKK
>BPEN_380 slyA, transcriptional activator for hemolysin (MarR family)
MESPLGSDLARLVRIWRALIDHRLKPLKLTQTHWITLHNICQLPPEQSQI
QLAKAIGIEQPSLVRTLDQLEEKSLIIRHTCLNDRRAKRIKLTDNARPVI
NEVNRVISITRNEIFNGISNEETIFLNKIISKLEKNIINLHNKN
>BPEN_540 ureG, putative urease accessory protein G
MLLNQYRKPLRIGVGGPVGSGKTALLEVLCKRMKDSYQLAVVTNDIYTKE
DQRILIDANALSADRIVGVETGGCPHTAIREDASMNLLAVEELISKFNNL
DIIFIESGGDNLSATFSPELSDLNLYVIDVAAGDKIPRKGGPGITRSDFL
IINKIDLAEYVGASLEIMNRDTNLMRKGLPWSFTNLKTGHGVQSVVDFIL
RQRLYLQ
>BPEN_038 yidZ, putative transcriptional regulator with periplasmic binding protein domain (LysR family)
MNNFDFNLLIILNALLEEYSVNLAAKKLNVTAPAISKSLNKIRILFNDQI
LVRSGTKLIPTPKAISLKENIKELVNRIESIFNNNIVFEPKITTISFTIA
SNNAILFILNTILFQKMKDKAPKAFIHLVNDSDYDDNFLRNHTIDLYIGE
MRALNPEITIRTIYVSKCCIISRNHHPILSQTKNMDNLLKYQFIKTKHEY
LTNSDEHSKYFWSERNLIGITPEYITTVNAIIHSDALAIIPEFILTMIQK
LNIPITHFNTDLNLGKKSIIQAWHSKHNRSSAHKWLREFTKKIFLTSIV
>BPEN_401 yqeI, putative transcriptional regulator with C-terminal, effector domain of the bipartite response regulator
MKYVIQSTIIFDTTEYTLTLLTDSNTSVKLSNSAGRVLEELIKRHNIDIC
APVTREHLFSIVWRAYGLEPSNGNLNQQISLIRKTLTSFGLDSSSIITIP
KRGLKLNNQLIVEKIHEDQPCVSSLLHKTTDQNNNLLSSSILLNIKAHIK
YMITLTIMAVILLSIGFVFLYTKKDHIKLYCCKEINSCNICAFHSELGFE
CNDCIMQCTEIT
>BPEN_258 yqgE, putative transcriptional regulator
MLTPHKIINLQNHFLIAMPALQDPLFKQSVVYICEHNDAGAMGIVINKLV
TRCTVETILNNLKIVSPTRDPSVRLDNPVFAGGPLLDDRGFILHTPIKGF
GSSVNISSKAMITTSKDILETLGTPNQPKDVLVALGYSGWDKGQLEHELM
ENTWLTAPANETILFHTPIIDRWRAAAKILGIDIYNIADQTGHA
>BPEN_046 yrbA, putative transcriptional regulator (BolA family)
MVDIMDVDDIKSILLKNLVLDEAYVSLYKDNYQIIAVSHIFYDGMTELER
HKIIYAPLMKYILNNEIHSISIQAFNPQEWNKKRGLCGV