Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View as list

# Yersinia pseudotuberculosis IP 32953, IP 32953

>YPTB3327 Putative regulatory protein
MHTIIEKNMNKQSHIVNGWLIDLASGFITHQETREKKRLGEYQLKLINVL
LEHAGEILSRDELTNLVWKRRVIGNNSLPNAIHTLRVALGDENKQQRIIQ
TIPKIGYLLDASFCEIIDATKETETAEQIALAQTDDEEIAAPLNGVTLHE
AVAASSSDIAHSWIAETNEKPADTAINDPLPPTQTGPVVMTRQHVTASQR
PPWNIFSYWSRVAIALLVLITAVAFYRLFPQNKGVSYTAIEQDQEAYSNI
RLFQLVDSALSLQQEEKLNQRLKDTLYTINKQSKAKSMSINIYYYVSLRR
LDFTFSVESQCENKQLGMTIYHWRQNSQLLNNLIYREMERKINEMVNC
>YPTB2983 conserved hypothetical protein
MSMSEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKK
VEYLIVEQEGTMRELRLDHIASFSHPEIGTVVVSAS
>YPTB2243 putative transcriptional regulatory protein
MHKSDKKLDQAARAAWMYYVAGQTQHEIAEALGVSRQVAQRLVACAIDNG
LVSVNITHPVARCMALAEQLQQRYGLHRCQVVPSQGMDNAGVQRAIAVAG
AEVMAQFLRQEQPLVIGVGSGRSLKAAIDELPDVERPQHSCVSLIGAIAA
DGSCTRYDVPLWMAEKTQGRYFILPAPLFADSAADRDLWCNHRIYRTVTE
KAAQADVTFIGIGSIGYHCPLHKDGFISAQDVDALLASHVVAEMLGNFID
ADGQPVPYALDQCLTSVKLRIQPEKPVIAIAGGKEKHQAIKAALKGQWLN
GLVTDEESAMVLLAEEKA
>YPTB3270 LacI-family regulatory protein.
MSHIAAKAGVSQSTVSLVLNGSYSIKLADDTREKVLRIAQEMGYVHKAVE
RPIARDKIALIINGLINHDPFIEAISAVQQAAWQHNKLLAIFDQENEPEH
CAALEEEICRGGYQGVIYASCMTSQLAPMFRNLSIPMVMLNGYCPELPDV
PCILPADKIGAYKATSHLLQQGYKRIAILAGELWMDAANDRISGYRQALI
NHDICPDEGYIQVTNWSLKEAYKKTLELLALTARPEAIFCSSDYIALGCY
QAILSQGLRIPDDIAVVGYDNQSISSELSPELSSVDLPYGEMGEIALHTL
LNITQQQPLLSLKMKVEGELVIRQSSIRPEK
>YPTB2729 putative two-component response regulator
MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIIL
DIMMPELDGYKVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYIS
KPFGIHEMRARIKTIVRRCLRKVPESAEDAGFPFGDLMVFPNELCAIRGE
TRLELSLREVNILRYLYQHKGRVVTRDMLFDAVWGYDHLPQSRTLDQHIS
KLRKTIELDPVHPVLIRTVHGAGYRYQGTAQSLEK
>YPTB0784 putative transcriptional regulatory protein
MIPQDNELLTEIAVSYYQDEMTQEEIAHKFGISRIKVGRLLKRAKTEGIV
EINVRYHPVFSTRLEQQLIEHFGLKRALIALDYQDEDEQRRQVAALVSAY
LATNLKDNTVLAVGQGRNVAAIADHVSVVPERHCKFICGIGGTHRPGDAI
NADHISRRLAKKFGGTSETLYAPAYVENRALKEAFMQNGTIKETLDRARK
ADMALVGIGDMNENSYMVELGWFTPQEIVDASLHQGVTGEIAGYDFFDAQ
GQPANTVMNDRVIGISTQELRQIPCVIAIAAENTKALALLGALRTGAIDI
LATSASNARTILKMIQHQS
>YPTB1199 putative LysR-family regulatory protein
MQKLLFSGRINLKMIRYFLAVSDELHFGKAAERLHISQPPLSLQIKELED
ALGFPLFIRDSRNVVLTLAGEMMKAEMKDVFDNIENSLSRVSYIARHEQT
HLNIGIIGSALWHQLLEKFKHYKTVNPKTTWSLHELPPSKQYEALLNKKL
DIGFWRCADLEQNPALIYRRVEKQRVAVAVSNESLLVNKKILTLKDLSGQ
TLIFLTFNHSGYSKNLYNSCLNAGCTPQAIYQFDEPQTQLAFVNSNLGIA
LVPESMQEIPWPNIKFIPLKEDLSADLFAVYHPDSVTPALNKLLALF
>YPTB3766 conserved hypothetical protein
MNEPLSRIIASELQARPEQVISAIRLLDEGNTVPFISRYRKEVTGGLDDI
QLRQLESRLGYLRELEDRRQTILKSIEDQGKLTDQLAGAINATLSKTELE
DLYLPYKPKRRTRGQIAIEAGLEPLAERLWQDPQQDPEHTALAYVDADKG
VADTKAALDGARYILMERFAEDATLLAKVRQYLWKNAHLVSKVVEGKEQE
GAKFRDYFDHHEPIAQVPSHRALAMFRGRNEGVLQLALDPDPQFDEPPRE
SQGEQIIINHLDLRLNNAPADGWRKAVVNWTWRIKVLLHLETELMSTLRE
RAEDEAINVFARNMQDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKL
VAFDTIYPHTGQAAKAAAVVAALCIKHQVELVAIGNGTASRETERFFVEL
QQQYPAVTAQKVIVSEAGASVYSASELASQEFPDLDVSIRGAVSIARRLQ
DPLAELVKIDPKSIGVGQYQHDVSQSQLAKKLDAVVEDCVNAVGVDLNTA
SVPLLTRVAGLTRMMAQNIVNWRDENGRFRNREQLLKVSRLGPKAFEQCA
GFLRINHGDNPLDASTVHPEAYPVVERILAATEQALQDLMGNANALRNLN
ARDFTTERFGVPTVTDILRELEKPGRDPRPEFKTATFAEGVETLNDLTPG
MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIV
KVKVMEVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNR
PHNDAKGHNAPNRAPAKGRSDSSSAGNSAMSDALAAAFKKR
>YPTB3120 putative DNA binding protein
MTYSSLIRLPEVLKRTGFSRPWVYKLLKQKRFPPPIKIGGRAIAFVESEV
NDWIEQQIAHSRGNKQ
>YPTB2164 putative AraC-family transcriptional regulatory protein
MMSEDILFIEELIEWIEINLEKRPTLDDVAKISGYSKWHLQRKFKSIVGL
QLASYIRGRVLTRAAVALRISRKPIITISDELGFDSQQTFTRTFKKRFGV
TPNSFRQMNHWDVQGMIPRFGFYENYTPEIKQVTLPGKELVGFTRRLDFE
EYNGCVVQRSSCMAMKDEILLDFFKEVNFACQRIYSLFSVKDVDGQQGQK
SVYYSTAIDKERKHEIQGSREIDHIAIPEGEFLSISHQGSAKECVKFATY
LFNNVLPKLRDEVGRGIEMEVIEIDHCHAESKLRDISVVYRYLMAVN
>YPTB3887 putative AraC-family transcriptional regulatory protein
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRID
NIKDWLGDGVIADFDDRQIEQLLANVNVPIVGVGGSYHQSEDYPSVDYIA
TDNKALVNAAFMHLKEKGLNRFAFYGLPASCGMRWAQEREYAFRQLVSAE
QYQGVVYQGMATAPDNWQYAQNRLADWVQTLPHQTGIIAVTDARARHLLQ
VCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTRQMGYRAAKLL
HQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIR
HHACKGIKVEQVLDAVGMSRSNLEKRFKDEVGQTIHGVIHEEKLDRARNL
LAATSLPINEISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY
>YPTB0864 putative rpiR-family transcriptional regulatory protein
MGKGMKQIDERLRGHYTQLTPQEQRVADFIFAHFDDLISYNSAELARLSG
VSKATVSRLFKRLGYGSYREMREEVRALRQSGMPLTDNRDAVQGNTLLAR
HYKQEMANLAHWVNQLDSQQLTDVIDAMAQAPRILLLGLRNSYPVALHLR
QQLLQVRQQVHVIPQAGQTLAEELVDITPHDLVIVVAFRRRPKAIREILL
HMQGQGVPTLLICEPQAQSLLSLARWRLTTPLDSVSAFDSYSAAMSLVNL
LSNALLHKILAEGRQRIHQIANLYDSLGELE
>YPTB1087 conserved hypothetical protein
MRCMMNGRITTFFEDKGFGFITDENGDNRYFHVIKVANPEMIKKGAEVTF
EPTTNTKGLSAFAVKVAIESKYIFIANERIKLTSIKSFNTFTKEVPAQAE
VDKANTILSVNLLMNKIRPQEEDISEKTVPLKMLSITTFQNVTYTFSEHE
VDIDSTVAKLKSI
>YPTB1086 putative LuxR-family regulatory proteins
MGIAKMISCMIVDNDKYQTLGMVSIVKKIFTSLGFKKEIKFYRKAFYSAD
VIFIGVDEFSFFEALKRLDKTPAEADVFLICDARLNSFLQGIPRFSDVTM
IFREDSLETVSNKIATVFKRKFRGFKDNLIERKTAKVLHLVSSERQYLTP
NENIVLKLFNEGFSGGDIARILKKSEKTVSGQKRSAMKKLGARTDVELIK
MFMFK
>YPTB0898 putative LysR-family transcriptional regulatory protein
MLLLSKSLRYFIITAQKESITLAADKLCITASPLSRNIKELEMKLGCELF
TRTSKGILLTSSGHFLYDKIIPVYNEIIELEKELISNHKLNVISEEKRLE
LNIGTDIFHYAHLLPIAKARFFNEENVNFSLEVSTSQDISQMLRENIYQV
FFSQRVLPKEHGIIHRKLSDEFMMIALQDDMYRDDMSQEDIISSYPLVQY
PRQNISSVVDELTNYLISRKLNPIRITLPNVNDHLSIINQGGAIGILPSS
VKKLINMHNYNIKLIPFVHKGEKLKVKSNAYYLCDNKDVFEENILPLLGD
SHL
>YPTB3386 AraC-family regulatory protein
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTP
SVVIIFQGHKVGYLGSKVFQYDPKNYLILSVPLPFECETFASPEIPLAGI
SIQVDSQMLQDLMMTMGDDELEKPPGNTSGVNSAPLTEEMLCATERLLDV
MSIARDARVLGPQIVREILYYVLCGSCGGALQALVNRHGHFNQITKTLRR
IENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQYLKSYRLHRAR
MMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN
>YPTB2534 putative LacI-family transcriptional regulatory protein
MSKAYSNATIVDIARRANVTNITVSRTFNQPGLVKQETREKIHAIAKELN
YVPNAFAQGLKRSSSQIIGIVTSSMYNPFYSELIQTVSRIARTQCYQIML
FDTDGSEEAEMEAIQALFGYKACGILLSPVRDDKNYQPAYLDLAETYRVP
LILIDRDIYNRQLSGVFLNNKEIGLLAGKYLSEQPERKMLIIGGPAESEI
TRVRIEGIINALENKKNDVHIINGDYDFISQEAAVRDYLSSPQNQPDYII
GLNGILTLGAIAICHELKIYNNIKFFSIDEPPKAADYGLHIAGVYHDTQM
LGEIAAELLFNAIKKPHNDQAVRREFFTGSLLTH
>YPTB3091 LacI-family regulatory protein
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAKSQGILQ
NLSSGRLMLNNIMVFAPHRAFDVRTDIFYYKVIQGITQAVSQHEVMIRYC
GLSETHSDISLFLDKMTHPQSEAAIIIGIDDPRIHALAASLHKPAVLINC
RDKEMSLDSVSPDHQSIGEFSAHYLIQQGHRRILTLQCLRRNTMELRLLG
IKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTACEDESRLPTAI
LVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVP
RDELGAEAIQLLQRRVLRPDAPFSNLLLQGKLVVRSSVKQVNQNRAMPAA
NKPTDQIYDL
>YPTB1958 putative GntR-family regulatory protein
MTRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLMTVVQSYQLL
ESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDINTFIFNVLQA
GKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSVTNLPPGNES
LRRNIAQRYAACGMNVSPEEIVITAGAMESLSLSLQAVTQPGDWVVIESP
AFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYPIKACWLMPHF
QNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAERLLPAKALD
QHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMSTVSASVPTQL
AIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNIKISHPAGGY
FLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHCFRLNASFAW
SEQSAKAIRILAKLIGQLTNERR
>YPTB1721 conserved hypothetical protein
MSKLVIKTATEDDFFTRGQQLATLADAGKSLPEEHTITFEDPLEMVRVLS
AARIVLLRTVKMYPGSITSLSTRLKRDRSTVTRDVAILKKAGLVTVEQKI
LPGHGRMKEVRTIAHRLKLEAFL
>YPTB3736 LacI-family transcriptional regulator
MVTLEDVAVLAGVSRATVSRVVNGDTNVKALTREKVEQAVAVLGYTPHPA
ARALASSQSNTLGLVTTSYRGGFFGALMDFVQTETESQGKQLLVTQGRDN
ADKEWLAIQRLYNLRCDGLILHVRFLSDERLRQLAAANRPFVLLDRLVPD
LEARCVTFDHHHASQMATQVLIDAGHRDIACISGSSQRQSSVLRIQGFLD
AMQLAGLEPVACLEGVYDLESGYLRADEILKQPRLPTAIYCCNEEMAIGA
LLAINKHGLQVPQDISLICYDSGERAPFVCPALTSVHFPIVEMAQYATQL
LIDPLIPAVNFPPAIIMRDSVMPPKTAC
>YPTB2418 AsnC-family transcriptional regulatory protein
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNY
TLGLDQKAFGYNLQAIVRVKPVANMLDAVEKMIKDTPECIECDKITGDDC
FLSRLSIRSMGQLDTIVDRWSEQAETYTSIVKTTPITRRFPPLVRPIKI
>YPTB1710 putative AraC-family transcriptional regulatory protein
MKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWENQ
ECVILPGEIAVINSGQTIDIINGLSNDDLFFSQQLHCDPSLIAAFAHHPT
SADLGVIPGVMAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHRMLELL
LWLAQRDVKFILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVVL
RRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRFA
ERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS
>YPTB2439 conserved hypothetical protein
MYYGFDMGGTKIELGVFDENLQRIWHKRVPTPREDYPQLLQILRDLTEEA
DTYCGVQGSVGIGIPGLPNADDGTVFTANVPSAMGQPLQADLSRLIQREV
RIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGGLIVNGSIVSGRNH
ITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCIENYISGRGFEWMYSH
FYQHTLPATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTMLDPHLVV
VGGGLSNFEKIYQELPKRLPAHLLRVARLPRIEKARYGDSGGVRGAAFLH
LAEK
>YPTB2702 putative lysR-family transcriptional regulatory protein
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLF
DRQARQPVLTDHGRRVLAHVQEILAASERLTDLSIRLAGQVETRLTFVLS
DTYYQPAHHENLLRRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVE
MQERYPPDIAATRLAAQTEMAVFVLRGHPLTRLPHLQNEQLATTRQLCLN
TYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWLVEQFGREKLV
TLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
>YPTB3550 putative lysR-family transcriptional regulatory protein
MFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFKLFT
RTTSGLKLTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQLNS
DHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTELTA
SCEIKLLYASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLIQQG
YSGNALRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFISDIN
LDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
>YPTB2183 putative transcriptional regulator
MMTITVPWITIGSLTLNQTGQSRSLMNTSPAPEFHLDKSSRLPLYLQLVN
SIKSAITEGRLHAGDVLPPERELAEMLDIARGTVRKALLQLLEGGVLVRN
QGVGTFIAPHVCPSLPLLESFSEMATASGGTAQSELLGYLRRPSALEERS
VLQMTQDNGDVVELTRLRKVNGITVSLQIAILPAHFLDNISELDESLYWH
LEKKGAQVLRATQHFSAAVTDSTLAHYLGTDEYEPVLLVTRTGFTHNDRP
VEYTRTWYLNDYCDFTIDLHRKDL
>YPTB1313 putative transcriptional regulatory protein
MVRSIWYFLRQCLMQEIKVMRLYQEVGSQLREAIVSGRYSVGDRLPPERD
IAENFSVSRSVVREALIMLELEKLVEVRKGSGVYVVNVPTMSLNGESATS
IDSGYGPFELLQARQLLESEVAAFAAMQATKADIIKMRNAIEQGKAALTA
GAIDESADELFHCLLAQSTQNSVLANMVAQTWQVRKSSAMWQGAHSHTAD
FSYRWQWLDDHQKILQAVLRRDSKAAKQAMWQHLENVKLKLLEISDADHP
DFDGYLFESAPYQIEE
>YPTB1771 CI repressor of phage 186 and others
MHMRVCKGVFASVDDKKLSGGIAAVERMMQAYGFKVQRELATYLGAGTGT
ISTWIKRDYFPGKEIVLCALETGVSLHWLATGEGEPQEPVKPAAHETAKS
IAHKSLEDGLLIDASPVLLDSELLPVQIVEPELISFPNEKRYFLVERQFK
NVADGLWLIEKAGVTSISNIARLPGDVWRINDVNWPVSEVNILAKVVGEI
TGY
>YPTB1518 putative LysR-family transcriptional regulatory protein
MDLTQLRMFCCVAETGSVARAAEQMHRVPSNLTTRLRQLELELGADLFIR
EKQRLRLSPMGHNFLCYANRILALSEEAMSITHAGEPAGNFPLGSMESTA
ATRLPNLLAAYHQRYPKVSLSLITGTSGEIIEQVRAGTLATALVDGPVQH
DELHGCRSFDEQLVIISCLERPPILQARDAVDETLFAFRPSCSYRLRLES
WFRQVGVLPGHIMEIQSYHAMLACVASGAGLALIPLSVLTLLPGHERVQV
HPLPPDIAHTATWLIWRKDAFSPNVRALKELIIENVEIP
>YPTB1923 putative two-component response regulator
MTKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVD
LVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGAN
GFISKNKDISEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLL
SEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIEL
ADYAHTHNLV
>YPTB3911 conserved hypothetical protein
MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKL
AKKGLVVAEAQTRGVGRPIQLWQLTESGNTHFPDAHGELAVQLLRLIRTQ
LGDNALELLIDSREQETRDQYCQAMVGVSNVAERVERLVAIRTGEGYMAQ
SQVEADGTILLSENHCPIWAAAASCQRFCRTELAVFQQALGVPVERVEHI
LSGARRCTYRIHPE
>YPTB1790 putative prophage repressor protein
MASTLAERVSERRSALNLSQEELARKSGVSRVAISKAELGLTKNFNGNTL
FNIARALLCNPEWLQTGKGNPELQSTSSANWDANVKENKDSHPLQSYEYP
KISWVSAGNWSEAIEPYSLDEIDEWVTTTKYAGHNAFWLDVKGDSMTSPV
GLTIPEGMSILVNPDVEPTSGKLVIAKLTDGNEATFKRYIEDAGNKYLKP
LNPQYPMIEINGNCRIIGVVVEAKWENL
>YPTB3819 putative regulatory protein
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEG
AVLALTENRMVMIDEAVAGRLKGVKPGINLPIIFRQRMVGVIGISGEPDK
VQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVA
SMAAYLGLDLTLPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGF
ERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNMYVGGIFDGLD
GLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELS
SAWQTLRQADSKDVLCHTLRCYFVQNCDLSQTSKQLHIHVNTLRYRLQKI
EAITALKINELNSILQLYIGMKIES
>YPTB1272 putative transcriptional regulatory protein
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGK
VVAINGGVKLNNLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYL
DAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVD
RRNRSCLGNSAANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAV
MRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPLVAQKQIKES
GVKLHLVNKEVRAPCSNSQPI
>YPTB1603 putative GerR-family transcriptional regulatory protein
MINVALIDDHIVVRSGFAQLLSLEEDIRIIGEYGCAAEAWENLPKTDVHV
AVIDISMPDESGLSLLKRLRQQIPHFRAIILSIYDTTAFVQSAMDAGASG
YLTKRCDPAALVQALRTVNGGGLYLCTDALRALRQMPQQPSKLTILTPRE
KEIFQLLVKGISVKALAEQLSLSHKTVHVHRANILSKLNCETTIELVHFA
LQHQLLAGN
>YPTB3913 putative acetyltransferase
MIRIYQPDDLNALMQLWLTSTIDAHPFVAEQYWHESAPLIRETYLPTART
WVYQQPGAATEENTIIGFISILEEQLVGALFVAQAFHGHGVAKALMDHVQ
QRYPALSLEVYQQNRRAYRFYRKQGFTVIGRAYHAETQGTILTMHWQHPA
H
>YPTB0315 putative AraC-family regulatory protein
MNTGYALAVLLVKLHKINCSLRNIMKSIQFILFRQEGVLRSDGERYVIPA
GKLVIADEQASASAFANSAITSILCYPIDLFPIYQDLARRTLPLNKGHLP
HAVNDKYKVLPANVEIIQAAEELINIERVASLRFLYLYCLGIDNVYFSKL
LDSIVGTNNELLEFFEKNRLNPWSVSRYANELGISTRKLNFLFYEKFGMS
AKQWLLDQRLKKGCELLLSTRLRVADIAMECGFSNHAHFSDSFRRRFQQC
PSHMRSLIE
>YPTB1339 putative LysR-family transcriptional regulatory protein
MHITLRQLEVFTEVLKSGSTTQASVVLALSQSAVSAALADLEGQLGVQLF
DRVGKRLVTNEHGRLLYPKALALLDQAIEIEQLFLHDLGALRIAASSTIG
NYMLPGMIAKYRRDFPGTPLELNIGNSQDVIEAVADFRGDLGLIEGPCHM
PELVTQNWLRDELVVFAAPDSPLCHKALTLVDLADADWILRERGSGTREV
LDHLLLAQLPHFKLVMELGNSEAIKRAVRYGMGVSCLSRRVIADQLASGE
LVELNIPLPPLIRTLYLIHHRQKHISNALLRFLSYCQEEE
>YPTB0225 putative acetyltransferase
MKLTIERLITLTHQDVIDLAKIWPNQQPAAWQQWITEGRPLFAARFNERL
LGAVKVAVYDQQAELQDLCVREVTRRRGVGLYLIEETLRQLPEIKHWYLN
GGDLTAAERPQINSFMLACGFSHEAQGWRR
>YPTB2737 putative rpiR-family transcriptional regulatory protein
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADL
SALTQAGEATIIRFCRTLGYKGFQDFKMDLAIEVATRHNSENSLLDADVQ
EGDDTLAIGSKLQSAINNVLSETLNLLSIESVEQVVKLLRPADRICIFGV
GSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDVAIGISHSG
TSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGD
SIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG
>YPTB3671 MerR-family transcriptional regulator
MLKIGQLAKLADVTPDTIRYYEKQGMMDHGERTDGGYRLYTDQDLQRLRF
IRYAKQLGFTLDTIAELLSIRIDPDHHTCQESKSIVDSRLSDVEGKIREL
ERMRDSLKRLSEACCGTSHATTYCSILEALEQGATEELIKV
>YPTB2077 LysR-family transcriptional regulatory protein
MHDLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLEERLGVRLIQ
RSTRRFAVTDVGRTYYEHCKAMIEEARAAQESIDLTRAEPRGVVRITCPV
ALLQATVSTMLADFMASCPLVTIHLEATNRQVDPVAEAIDIAIRVRPPPL
QNSDLVLRVLGNRCQCLVASPELIGRQGEVNTPVDLTGWPSLGLGQPQQT
FIWNLEGPEKAHAAVYHQPRLVTADMNTLRSAALAGVGVVQLPLMMVTEQ
LAEGTLVRLLPDWSVRHEIIHAVYPSRRGLLPSVRSVLDYLVQRFSQLDE
R
>YPTB0131 LysR-family transcriptional regulatory protein
MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGANLFTR
HRNNIRLTPAGERLVPYAEMLLNTWRLAKKEVIHSLQHTELSIGATASLW
EAYLTPWLQQLYEQQEELRLEARIALRNSLVKQLHERQLDLLITTEPPKM
DELACLLLGHFSLRLYSSFSLDLPKEDDTPNEHKNASEVPYIKLEWGADF
HQQENRLLDSEQAPILTTTSAHLTRQLLETTGGCAFLPEHWQKEYPQLVI
HPDIPPIVRPLYAVWLQNSDQQALIRQLLKTPMNNATQSVTRE
>YPTB1455 conserved hypothetical protein
MKIMSEKRIAQAQVRFGFLGQITIRSQFGGYGLLVNSIMFAVVSEGELYL
RANDNIEDLFRASGMANLVYAKRGLPVLLRYYRVDTSLWNDGLRLHHFVR
QAYEGAKIDVLSKKGPVVRLKDLPNLSASLERLLWKVGIKNATELRLEGA
KCCYLKLRALRRSLGINILLALAGAISGYHYAALPLMMRSELIEWFEKHI
HPAKAPLYETA
>YPTB1051 putative LysR-family transcriptional regulatory protein
MLKENFNELQSFLVVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRL
LTRTTRSVAPTEAGERIIACLEPRLADLEQELETLLQLNGTVSGNIRLSA
GEHAARSLLWPKLKPFLRKYPEINVELVVDNGFVNIVDGRFDAGVRLGES
VDKDMIAVKIGPEMRMAVVGSPEYFVANAIPVTPHELQHHRCINMRLPTA
GGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLACVPEDSIQ
AFLRSGKLIQVLEAWCPSFPGYYLYYPSRKQHPPVFALMIDALRYSD
>YPTB3125 Putative DNA binding protein
MAKLQYIHDEAGKPQFVVLPVAEYQQLISNAKYEDIPYVADNDDDQTIPN
EVVQIMVNDGVSLLAAWRIYRGFSQYEIAELLGTTQSAVSQWEAVDSRPQ
KKTREKLAVIYKCRAAQMIL
>YPTB2533 putativeLlysR-family transcriptional regulatory protein
MNNLPILSDLRVFLLVARRAGFAAAAEEMGVSPAYVSKRVAILEKMLNVA
LLHRTTRRVTISEDGERTYEWAQRILHDVDQMMDELSAIRQEPQGTLRVI
SSFGFGRRFVAPALSALAREYPRLELRFDVEDRLIDLVTEGVDLDIRVGD
NIGDNLIACQLAPNRRILCASPDFLQRYGTPKALSELPGFACLVIKERDH
PFGIWRLHNGTEEQSIKVTGPMASNHGEIVHQWCLDGQGIALRSYWDVKD
NIHSGKLVHILPEYFQSANIWAVYVTRLAMSAKVRVSVEFLRRYFNEHYG
AENTSANGGTLKR
>YPTB0489 putative transcriptional regulatory protein
MKSDLTLHAWDEVRAELLQDEETARAYAIVMLRKALLNSLVAVRKSKQLT
QVDIAKRIGVSRQAISKFEKGESAPTLDTLIGYTAAMDIDFAANMKKIFT
QTF
>YPTB0820 putative transcriptional regulatory protein
MSRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGV
VKISVIQPANMFIGIESRIQKHYGIDQAIVVDITDDASPAQIKQAIGSAA
AHYMQTSIRPNDMVGISSWSSTIRAMVDNLHPLNIKTSGVIQLLGGVGPN
GNVQATLLTQSLANILNCPAYLLPAQSIERSTEDRARLISSGEVADVVNK
FAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGAVGDLCLHYFD
AAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYI
DVLITDRLTAETLL
>YPTB0275 putative acetyltransferase
MKIVLLNAATFPIYRSGLASLLIDAVTYGASVGYNTHTLSQEEAEGYFHS
LHPAIEREALLLWIARDEIGIIGTIQLVLCQKPNGLNRAEIQKLLVHSRS
RRTGIGHKLIIAAENTAVQLRRGLIYLDTQSGSSAESFYRAQGYRYVGEI
PDYACTPNGNYHPTAIYFKRLFTVVQPHTAIQN
>YPTB2196 putative transcriptional regulator
MQGNLSAASTPTTACNQRLRDSWLRSQLYGLDRMSDDVPRIEQGELADLL
VSHAVLQQFSQPTVKALAEKIADKQSVVVLADASGLVLNTFGDIQALQKA
QQFALTPGNLWSECSRGTNAIGTALAIDDSCEIYGHQHYLINNQGLYCAA
MPLQAPNGQIAGVLDISGPAYHSHPHTLAWIKNAAKQIEYLWVKQSLHPD
QWLMSLHPQIQGIDNIEELLLVFSDNTLMAANRLAMHELALGADQFGALT
FQQLFPQSKQVANQVPHPLMARNQQRYFFRLRAPARSHFPAIIHVPTTSV
TSPDLSFSLRDDDKKMVRLLNAGVSLCINGETGSGKEYVSRALHQQSRWR
QGKFVVINCAAIPESLIESELFGYQPGAFTGASKNGYIGKIREADGGVLF
LDEIGDMPLSLQTRLLRVLQEKEVTPLGSSRSWPVNFAVVCATHRDLPQL
VAEGGFREDLLYRLQEFSLTIPPLREWPALPAFILQLWRALGGEQRGIRF
TPALLDTLAKHPWPGNVRQLQSLLKVLFALADDDEVLDCETLPDNFRGEN
SEPYPALQQHDKQFIEKTLQYFNGNISKTAKALGIARSTLYRRAAREKRQ
>YPTB2621 putative AraC-family regulatory protein
MTEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAM
SIGGQRFLAPPEFIVWVPAGMEHSSYNRKPMHFRAIDIALDFCTELPASP
GLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYL
PTSQDKLLSPILAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMA
FSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIAMFQQISGTTP
ERFRRGNSGLY
>YPTB2599 LacI-family transcriptional regulatory protein
MEKIRKRRNTGRVTLQEVADYAGVGSMTVSRALRTPEQVSDKLREKIEQA
VEKLGYIPNRAAGALASGHSDTVAVLIPSLTDKASSRFMQALQQILNKNE
FQLLLGCHEYNQRKEAEILMTLLQSHPAAVVIFGSQLADKTYQILERTNI
PIVNVVGSYFKGAKITLEAAFFESAYELTRHLLERGYQHIGYLGAHRDNQ
LQRQQLNGWHKSMLEHYKNADQTVTTPDAASLQFGRYALTEILLRQPELD
AVICSHEDIALGVLFECQRRLLKIPGGIAVACLDGSESCDQTHPTLTSMR
IDYKKMGKEAGKMLIDMLNEDDAGVKSVPLSQSFNYKFEPRQST
>YPTB2486 putative LuxR-family regulatory protein
MKILIIDECFYTRSGVNTYLNSVSSIKLMDVPTVEEATLAIQEFQPDIII
VNLTQYCRYGGHCPLLAQFIHYCTRAKVYIYLDASYPFSETPIPLTESVS
ILAKKHLPNLLRRLPGFSLERLGIQPNQQASLFSPQEHKVMCYWMTEMPN
YRIARKLNISGSTVYSHKRHITEKIKVRNRLELCFIYNVFKYLY
>YPTB2569 putative LacI-family transcriptional regulatory protein
MKNQRVTLQDIALLAGVTKMTVSRYLRMPEKVAPETGERIAQVMAEVNYS
ADPESETSLNQKSPRIGILVPSFNNQIFSDLLAGIESITVANGYQTLVVN
YNYNKAREEEQIINLLSCQISGLILTDSEHTLRADKYLNAAEIPIAQVMD
LEPQENRITVGFNNYQAAYDMTTTLLASGKQHIVYFGSMSDARDRKRYQG
YSQAVTDAGFTPLHITPNKVSSVSIGAGMLALARQMYPDVDAIFCTNDDM
AVGVLQECLKLGVAIPAEMAISGFHGLDIGQATTPILASVTTPRFEMGKV
AAEILIKKIKKIPTIEQVDLHYRLSLGGTI
>YPTB1300 putative DEAD box helicase family protein
MAFTLRPYQREAVDATVAYFRRHTTPALIVLPTGAGKSLVIAELAKLARG
RVLVLAHVKELVAQNHAKYCAYGLEADIFAAGLQQRQSEGKVVFGNVQSV
ARNLPLFDSAFSLLIIDECHRISDEDDSQYQQIIQHLRTGNPQLRLLGLT
ATPYRLGKGWIYQFHYHGITRGDEKALFRDCIYELPLRYMIKHGFLVPPE
RLDMPVVQYDFSRLTSNSDGLFREADLDRELKQQQRITPHIVSQIIEYAA
QRRGVMIFAATVEHAKEVYGLLPKGEAALVSAGTPPAERDALINAFKQQQ
LRYLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLFPGKED
CLILDYAGNPHDLFTPEVGTSKPHSGSQPVQVFCPDCGFANIFWGKCTES
GEIIEHYGRRCQGWFEDDQGARAQCDYRFRFKSCPHCGAENDIAARRCHQ
CQAVLVDPDDMLKAALKLKDALVLRCGGMQLETGQDAKGEWLKATYYDED
GTNTSERFRLTTPAQRMAFEQIFLRPHQRAPGIALKWHTAADIIAQQALL
RYPDFVVARRRGQWWQIREKVFDYKGRFRRADALA
>YPTB1040 conserved hypothetical protein
MSPNLIAEHDKILKWPEVNDLASGHFLWLPEFKTPSGDLFQALLEDDGSN
MAHIHIKERLSGEHIASYVLTFDLTPPLDLGQRLPQVESAYVSQEYQGGG
VSTATYKAIIDHYGAVISDTYQTEGGMVLWLFGLSKDDSVQLTILNVDGH
TLDYKINEHGERISFQADRKSLLEIADTVWGNPDNVELSNLETLGFTPSW
RNHSNHVLAATKSII
>YPTB0029 conserved membrane protein
MYHLRVPITEQELKDYYQFRWEMLRKPLHQPIGSEKDAYDAMAHHQMVVD
EQGKAVAIGRLYINADNEAAIRFLAVAPSVRNKGLGTLVAMTLESVARQE
GVKRVVCSAREDAVDFFAKLGFVCQGEITAPQTTPVRHFLMIKPVATMDD
ILHRPDWCGQLQQAWYDHIPLSEKMGVRISQYTGQRFVTTMPEAGNQNPH
HTLFAGSLFSLATLTGWGLIWLLLRERHLGGTIILADAHIRYSAPVTGRP
RAVAELSSLSGDLDRLARGRRARVQLNVNLFGDENQGAVFEGTYMVLPVA
AGDDMAN
>YPTB1870 putative prophage transcriptional regulator
MPNKKEELLFLIGARLREEREKTGESQEAMATNFGVSTRTWGKYERGETV
PDAATLALLNAQYGLDVMYILTGKRTPPDTISTEELKLVENYRAMDDSAR
LNIQAVGDAFAQSKPQLKSNNN
>YPTB1936 probable deoR-family transcriptional regulatory protein
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVL
SVSGGVRSTQRLAIEPSHQDKTMMFSRQKQAIGTSAALHIPRNSCIYLDA
GTTTLALARQLEDRDDLLVVTNDFVIANFLIESSQCRMIHSGGTLCRKNR
SCIGEAAAHSLRNLSIDIAFISASCWGLRGISTPDEDKVPVKRAISEASS
KRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYEELAEKALELI
IASPPR
>YPTB2301 LysR-family transcriptional regulatory protein
MWSEYSLDVVDAVARTGGFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFE
RRHRDVELTEAGVVFLKEARDVIKKMNDTRRQCQQVANGWRGQLNIVVDK
IVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATR
AIPVGGRFVFRDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLED
TALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMVPAHMVSPLIA
QGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLR
DDSQQLIANN
>YPTB3801 putative response regulator protein
MKPAILVVDDDTAICEVLRDVLNEHVFDVLLCHSGNEALQITATQPSIAL
ILLDMMLPDINGLLVLQQVQKLRPSLPVVMLTGMGSESDMVVGLEMGADD
YIAKPFNARVVVARVKAVLRRSEVLAIESSSVKACGLQFNGWRLNTDRCQ
LMNPQQQQIDLTQGEYGLLLSLMQNARKVLSREKLLELTHRESLDVFDRT
IDVLIMRLRRKIEVNPHQPTLIRTIRGVGYVFAADIIHA
>YPTB3368 Possible Yersinia enterocolitica-like Orf1 (AF005744)
MEKNEIVFKLEGAVLFSPEKRCLSGPGGTVAVLTENNLRFLQLLLNGVTE
KEEIINEVWKEQRGAISESSYYGQLYMLRKAFLQVGLKESLIHTIPRKGV
RYTGSISQVAINSNPENQQSSETANSVSIMHDPAPLAVATIPTDAGTMTL
SSPPTKQSFLHSHRWKKLISLLAVFSFCWLSFLSALVIIILLKGE
>YPTB1038 hypothetical protein
MATRYIKWPEMLLLVGKSRPTIWRMYSKRNEFPKPERTKSGMFLGWPEAS
YEEWVQSKKC
>YPTB1683 putative transcriptional regulatory protein
MKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGVSRATVINY
LNEARLRGIVEIKISDEHLASMRLAQAIMREFGLERCIVIPDDQGQRPTA
LRVGEAGSQLLSSLIAPNDVLGVSWGQTVLALSHAITRHPVADLTVIQIT
GSMHSTYEFSPELCTSNIADRYRARCINLHAPFLLSRPEIKEMLCNEPAL
MPQLALLNTCTKIVFGVGNTAADSTIFSSNTVTYAAVEPYRQQGAVAIIA
GRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNKVEAIRATL
KGQHATVLVTDEVTACALMTRAKTP
>YPTB3424 LysR-family regulatory protein.
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLN
RTTRSLNLTEDGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRIEALV
SVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLED
SSQIARHVCDVHLGLYAAPAYLEAAGAVTHPHELSVHRRISWFTGQRNPF
IWSLQSTSDAFELPAEEGLLFDDPDVALASCMAGSGICPGAPFAVESWVR
AGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMR
ITPWELAERILKGDIFSR
>YPTB2501 putative LysR-family transcriptional regulator
MRKLPSLRMLRVFEEACHTLSFSKAAEALFMTQSAASRQIKQLENFLGKS
LFIRGHRGLELTQDAMTMLPIVRQSLDLLEEGVKHVQLSNPLQHLRLQVA
PTFATRWLAPRLVTLLQRNSQLQIALISEIRQKYCDFDSAIRFGDIRRDL
SNGHLLCYEQLCLVASPLVMQQGRFPPLTALPQLHILNGDSRLTNWQQWL
DAAQITVAAGHNALEFSTQDQVISACTTGAGYAVLDILMISHELDNGLLR
QVLPLTVTSTHGYWLEIPQDKGHSPRVVIFQEWLQRELKRDIAKRYSKGE
AKPLPAVL
>YPTB0195 putative TetR-family regulatory protein
MNTQNKQEGFSPSLTTIRARTRRLLIDTAMSMYERGAFPSITEVASAAQL
SRATAYRYFPTQSALVSAMVDESLGPILAWQPTQPDARQRIAELLSFAYP
RMLQHEGVLRAALHLSLQQWADARSSDSNNSSNEEKLIRGNRKRLLKLAV
EPLEETLAPEALQRVIHAFSLIYGSEVFMVLKDIWHLDEAGIQDVTQWMG
KAILLQAETDSQLAAQDKTHS
>YPTB0333 putative LysR-family transcriptional regulator
MMSIDENTFAFSAKINNHAIYKHLENFIKIVECNSLSIAAHKLNITPSST
SRSLAQLEEKLGVVLLKRTTRSIVLTDAGDYLFHQARQLLLDLDETLVNT
HSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCLSVDLNDQLVN
LNEEHFDIALRITSIPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIED
LEQHDCLVNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQ
GIVCLPTYMLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIR
SFIDFMLDELSMDVPWDKWRADYQISLS
>YPTB0541 putative transcriptional regulator
MTIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGS
QAMIWDRLYDDFHHKDEYIMHRGDILFIPSGGWNIPQWEQPVITLSILFG
KQSLGFSLLSWDGESVVHKEMESVLRRGPRVGAYILQALNEMSLMQREQT
TVQLIVRSLISHCIDLLRNQVKTPSRSQTLFESIREYIERNYSEPLTRES
VAHVFHISPNYLSHLFRNVGNIGFNESVNSARLENAKILLKFYEMKIKEV
ANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI
>YPTB2811 putative GntR-family regulatory protein and aminotransferase (MocR family)
MRSLLSDLLLQRLTPATLSTVPVAKNKRLYRALRLSILDGSIRAGSRLPA
SRDLAQELEISRNTVLAAYDQLQAEGYIQTRTGGGTFVTTDLPEDGLNKM
DTLPQHSGPEPDVALSTRATHLLNHCGVASYQWGTFMPGVPDVRLFPHEV
WRKLQTRLSRHLNPENLTYSVHGGCPQLQQALADYLRIARSVSCTPDQIL
ITAGTHQALDLLAKMLCDPGDHAWIEEPSYWGIRNVLTINGIEVIPVSVD
ENGMDPLDLPFESRSPRLICVTPSHQYPLGSVMSLTRRQRILALAQQHNC
WVVEDDYDSEFRFSGSPIPALQGLIPDAPVIYLGTFSKTLYPGMRISYMV
LPRPLAQQFKVAHSELYRGGNGMMQLTLAEFIREGHYASHIRRMRLIYGK
RRAALVGMIKQQLGESFLAEYGNAGLHLILALPESIDDVALSAELEQKGV
LVRALSGYYLKSPPRRGLLLGYGCVPEEAMEAVFAPIVSYLRRRINPDDA
I
>YPTB3490 lysR-family transcriptional regulatory protein
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELD
VVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHIT
IVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVI
APDMHFRASSEINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGI
AVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGVATMPYEMVE
KDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLRKIPKLLGK
>pYV0031 sopB; putative plasmid partitioning control protein
MMKRSPVLRNAPSINFDDAKPAISNAEPSVSAPAVSQLASRVSGMKGNTI
VLPVCGRNVAFTLKVIAAPDVESKTIVFSGNERNQALLSETSLDDLIPSF
LTSGQQIPAFAREHNGNIEVADGSRRRKAAILTGSDYKVLVGNLNDEQML
WLSQIANEYRPTSAYERGLRYAQRLISEFEGNISKLAEAEHLSRKIIQRC
IKTAGLPLKTIQLFANPNELSARSGEALSKAYENNVDTLKRVTYKIMKQK
QEGRQFTTEELIVLLMPERKQPENIHKKSFGKNIEAKYSKDNVSFYLKSV
PESLVKQIEELLNTYAKEHSL
>YPTB2095 putative LysR-family transcriptional regulatory protein
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFK
REKFGMSLTRDGEVLYNDLKDLYQQEKEITKKHLTGHVSNVINIYYDWGK
SENLTQLYKIAEKNNIQANIIKFYYENIDEIGDYDGNSLILSSEKIASER
FMLLNEVQDIGFGIYGRKDIINESEDIINILHSNVWLCNPTLYKSKFVKS
LEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIMDDFNGDSKLD
FVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE
>YPTB1934 putative aminotransferase
MNKIITDQRHQFSSRVNDLHPSPIREILSVIDRPGMISFAGGLPAVESFP
HMSLEGMPQPMLQYGASEGELELRQQIAQNLCERGLSCTEEQVLIISGSQ
QGIDLVAKLFIDEGTPVAVESPTYLAALQVFRFFGAQFVAYDSTQPDIDK
LRTEKPAFAYTIPTFQNPSGHCLDTEQRELLAKTCDDIMLPLFEDDPYHD
LVYDPCERKPVCASLQRASWIYQGSFSKSLSPALRLGYLVASSELIPYLT
RLKQAADLHSSRISQWLVLQQLRSPRHTEHMHELAAYYRTRRDAFEISLQ
RHFGSLATWKKPAGGLFFWLTLNRCIDTRQLLPKALASNIAFMPGESFLP
HSSEGCGQLRLNFSHATEEQADVGLKILAGLVQEHA
>YPTB0840 putative two-component system response regulator
MLRVIIVDDEQPAREDLRERLNEEHGIEIVAECSNALEAIPAIQRLQPDV
VFLDIQMPRINGLELASMLNPESMPHIVFVTAYDEYAIRAFEEHAFDYLL
KPLDHQRLAKTLTRLSRDLIVKNNLHKVIEPILRHIPCSGHNRIFLLKIE
EVEYLSSELSGVHVVGTVQSGYTQLSLKTLEEKTPFIRCHRQYMVNTEQL
GEIQLMDNGAAEVITRSGKHIPVSRRYLKSLKEKLGIA
>YPTB3654 repressor of aceBA operon
MALPIPIKRGKKPKAATQNTPAATGQVQSLTRGLKLLEYISESDGNVALT
DLAQQAGLPNSTTHRLLTTMQQQGFVRQVGDLGLWTMGAHAFIVGSSFLQ
SRNLLAMVHPMLRRLMDESGETVNLAVLDHSDYQAIIIDQVQCTALMRMS
APIGGKLPMHASGAGKAFLSTLPDDQLVQLLHKKGLHAYTQHTRTNPTSL
KENLALIRKQGYSFDDEEHALGLRCIAACLFDEHHEAFAAISISGPISRI
TDDRVTELGALVIHAAKEITQSYGGGTGVK
>YPTB2018 putative transcriptional regulatory protein
MKKRVCAGINIKDTMNIRPERLELRGSQRLLLELIRRHAPVTRAELARLS
NLTAGAITQQCRELIFAGLVVEGERNTGQRGQPSLPLRLNPGGGCAIGLS
FSPGFIDMTVVDLSGRQLLSVAEPHQENQPLTATLCQIKTLVEQTLKKRQ
LQHARIIGIGYAVPGFLKADGHKRHCVPWLHTWREADLQQVFADNLPWPT
RVENNANASAIGELYSGEWNNYSDLTFIDLGYGIGAGVISGHKLLRGGFF
NAGEVGMAFPSGTPRPSYKDLLATLEREGFSETQLPVLSAGRHPVLEKWF
ERCCDQVQQTVFGCVQWVDPQLIVLGGAMPKPIISRLVQEISQRLNTCLD
PERPKVTLAASSMGAESASRGAAMIPLYQVINED
>YPTB1213 putative tetR family transcriptional regulator
MSHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQR
AGQNIAAITYYFNSKEGLYLAVAQYIADFIQQAFSPLAQEIDHFLQLPAE
HQPPEQQLHYIRQGLLAFSHLMTQPETLNLSKIMAREQLSPSEAYPLIHT
QAIAPLHQTLNQLLAAFTGTDASATKTIIHTHALIGEVLAFRLARETIRR
QAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL
>YPTB2860 conserved hypothetical protein
MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLR
KNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRCQGKEGCQG
GNRCLTHTLWRDLSERISSFLNNITLAELVNNQDILEVADRQNNDTRRTA
NGRPQETINVNLRA
>YPTB3543 putative ribonuclease inhibitor
MVKVVFDFNHIPDLPAFYRAFSQNFALSEDFGANLDALWDVVTGEIALPV
EIEFVHFSRRHQRRFAAIVLLLEEAEEELAGRLHFNVVDEHIV
>YPTB0080 possible transcriptional regulator
MRKKNDRNSIKIMQIRAFCMTAEQGAASLAALNLFRTQSAITRSIRDLEH
TLAISLFERHAKGMLLTDLGNVILPRARSAMEELTRIPALLRRLQQRDDE
GIEDLEPIWLFNERRLQIFLSLYRQQHALHVAQALDITQSAVSAALKVLE
KGAGMYLFHRTPKGMLPTPAGHEIAPCISRALNALHHIPEEITAHRGALT
GSVRVGALPLSRARLLPLAMIKLISRHPGIKIVTNESGFTALIAELRAGD
IDFIIGALRNEKMLLDIHSEILFEEELILLARPNHPLSDRRVKNQELKDI
QWVLPRNHAPSRHLLEVAFCKMGLASPQPVVESGDPAVVRALLLGSDMVA
AVSSHQLDFEVSEGILIPLQVNLTGTRREIGLMTRQKALNSPATDALINC
VREVIQSSNDK
>YPTB3444 LacI-family regulatory protein
MSVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANN
NAKMLKAKKSGAIGLFFNSWFGPVYSELVRGIEERVHREHYDLVACSLYG
GEQSTAHKYLRDRSVDGAIILTSSFDDRFLQSVASDVLPIVVLDRELKSP
HIYNVLIDNFGGAFKAVNALLAKGCRDIYFFSGPEQSYDNQKRLDGFIAA
LGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAIFSANDEMAIG
ILRAAKEHNIRVPDDLKVVGFDNIYASGVLTPSLTTINHHKYEMGVISAN
TLLRAIKEETDIDAVTLLPTELIERETL
>YPTB1927 probable LysR-family transcriptional regulator
MKMELRHIRYFLAVAEERHFTRAAARLGIGQPPLSQQIKDLERELGALLF
RRVSYGAELTEAGIAFLDVVKEIPVMAERATQAAQRAVRGELGVLRVGFT
ASSAFNSVVPTAIRAFRRAYPDVRLQLEEDNTTRLADGLNEGSLDVAFLR
PGFAGSERFHLRMLSEEPMMIVMAENHPAASYEEISLSAFRDETFLLFPR
EIGLTLYDSVIESCRTAGFEPTIGQLAPQIASVINLVAAEMGVSIVPASM
SQVKVIGVVYRHIADQTPTAKLALAYRRGDTSPVLRNFVLTVFP
>YPTB3208 Conserved hypothetical protein
MNLQHHFLIAMPSLQDPQFKRSVIYICEHDEKGAMGLVINKPLEQLTVET
ILEKLKIKSPSRDPAIRLDNVVLAGGPLAEDRGFILHSPQEGFASSIHIS
PETMITTSKDVLETLGTSGQPKNLLVALGYASWRQGQLEQELLDNVWLTT
EADTHILFNTPIAERWQAAANKLGINIFNIAPQAGHA
>YPTB1268 putative cI prophage repressor protein
MKKKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFL
NGVNPLNITNAAAFAKVLNEPISSFSPSLAKELAKMAESLSITTRSGAKD
KPAVSVANSYPLISWISAGNWYEAIEPYTLRDIEIWPESTKHAHESAFWL
SVKGDSMTSPSGISFPEGMIILVDPEKEPMPGNFVIAKLTDDNEATFKKL
VVDAGIKYLKPLNPAYRLIELNGNCKILGVVVDARWLQID
>YPTB2256 putative regulatory protein
MYKIKRFSQITGISEFNLRYFDQIGLLPAERDNSRYRLYHPRQIAMAHLI
LSLQKAHVSNEKIKSILMDYSSKNSQSALCYAQHAIDETLHQLTCARHFL
TTQIERQMLINDAKRRLNNPFIEERNIEPLGIFSINTPNIIDFFKYVSEV
SGNPDWYLRHRYGFIVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGS
YFSGFYKGSLENNPAVSKHLSQADDNGMNHSSKVIIEHISGPATVKCKSE
FLIKVMYPCHHQLDGSHETPTVLTPSSTN
>YPTB2884 putative RpiR-family transcriptional regulatory protein
MSSLLRIRQIYSTLAQNDRKLADFLLINPEQARHLSSQKLAQQTGVSQSA
VVKFAQKLGYKGFPALKLALSEVVAMPKAVTLHNQILSTDSLKTIGEKLL
NEKTAALRATLDINSEQRLIQGLGMLRAAQKVLLIGIGASGLVAKDLAYK
LLKIGIVAISETDMHVQLAAAQALGEQGLLLAISFSGERREINLAAEEAQ
YCGTKVLALTRFSPNSLQQRADHCLYTISEEPVIRSAAISSSTAQYALTD
LLFMAMIQQDIENAQDHIKHSAALIKKLI
>YPTB1289 putative LacI-family regulatory protein
MFTYKEISTLNELELIVYNYIIKNTDKVMYMTIRELADASGVSTTTVLRF
CKKMNCDGYSEFRIRFKLYLEHDEKPPVTFGISEIISYFKSINNSEFDEL
LDNVAKQIAATRRVIFVGIGTSGALGKYSARFFSNVGKYSTYIDDPYYPI
NSDMYQDAVAIILSVSGETEEIIRIANQFSLQNCKIISLTNSESSTLAKM
ADLNISYHMPPVILEGQYNITTQIPVLYIIETIGKKLPQLMNKNTK
>YPTB2865 putative RNA-binding protein
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDL
ATTRQDIAEVASEIQRFYHLELNASADDYYQINGSRLDKRLCLIHWLRRG
LRYCPHFIEHYFSPDLYQALAWNNGLLSSALRRSTLRQSTLRQSTLRQSI
LRQSTLRQIVYQCEPHLNRQLSEKDRQFLQLYLAYCVWENQQHTVPQLSM
TQQQWLEQKPARVAADHLFNALNRLLIPPLGLIERDMLILMLTMIKAHHY
HSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLAPAIER
CYFNIGIDHSLPKDISKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIA
ISFGAWLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLHIKYLS
HDVYLQSGAPAGTAVVLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRIL
ELP
>pYV0001 ypkA; putative targeted effector protein kinase
MKSVKIMGTMPPSISLAKAHERISQHWQNPVGELNIGGKRYRIIDNQVLR
LNPHSGFSLFREGVGKIFSGKMFNFSIARNLTDTLHAAQKTTSQELRSDI
PNALSNLFGAKPQTELPLGWKGEPLSGAPDLEGMRVAETDKFAEGESHIS
IIETKDKQRLVAKIERSIAEGHLFAELEAYKHIYKTAGKHPNLANVHGMA
VVPYGNRKEEALLMDEVDGWRCSDTLRTLADSWKQGKINSEAYWGTIKFI
AHRLLDVTNHLAKAGVVHNDIKPGNVVFDRASGEPVVIDLGLHSRSGEQP
KGFTESFKAPELGVGNLGASEKSDVFLVVSTLLHCIEGFEKNPEIKPNQG
LRFITSEPAHVMDENGYPIHRPGIAGVETAYTRFITDILGVSADSRPDSN
EARLHEFLSDGTIDEESAKQILKDTLTGEMSPLSTDVRRITPKKLRELSD
LLRTHLSSAATKQLDMGGVLSDLDTMLVALDKAEREGGVDKDQLKSFNSL
ILKTYRVIEDYVKGREGDTKNSSTEVSPYHRSNFMLSIVEPSLQRIQKHL
DQTHSFSDIGSLVRAHKHLETLLEVLVTLSQQGQPVSSETYGFLNRLAEA
KITLSQQLNTLQQQQESAKAQLSILINRSGSWADVARQSLQRFDSTRPVV
KFGTEQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQLGRS
SLMDEHLVEQREKLRELTTIAERLNRLEREWM
>YPTB3075 DeoR-family regulatory protein
MKAAIERRMEIFNIVTQQGKARVEDLAERFNVSSVTIRSDLSFLEKNGYI
VRSHGSAIPNTGVIAELTVHEKRRRNSGVKSLIGQAAAKLINSGDTVILD
SGTTTREIAANLRSVENVVVMTNGLDVAMELASAPGVEVLISGGVLRKSA
MSFSGSQAEASLKNFRFDKVFLGVDGFDLRVGITTYNEQEASLNRLMCDI
SEQIIAVADSTKFGKRSCHMIREFGDIDILVTDSDIPEEYVQRLRDMRIE
VIIAEKEK
>pYV0076 lcrF, virF; putative thermoregulatory protein
MASLEIIKLEWVTPIFKVVEHSQDGLYILLQGQISWQSSGQTYDLDEGNM
LFLRRGSYAVRCGTKEPCQLLWIPLPGSFLSTFLHRFGSLLSEIGRDNST
PKPLLIFNISPILSQSIQNLCAILERSDFPSVLTQLRIEELLLLLAFSSQ
GTLFLSALRHLGNRPEERLQKFMEENYLQGWKLSKFAREFGMGLTTFKEL
FGTVYGISPRAWISERRILYAHQLLLNGKMSIVDIAMEAGFSSQSYFTQS
YRRRFGCTPSQARLTKIATTG
>YPTB3549 probable lysR-family transcriptional regulatory protein
MERLKQMSVFAKVVECGSFTAAARRLENSVSSISQTVSKLENELNVKLLN
RSTRRIGLTEAGRIYYQGCRRMLQEVQQVHEQLYAFNNTPTGTLRIGCSS
TMAQNVLATMTADMLKAYPGLSVNLVAGIPAPDLIADGLDVVIRVGALQN
SGLFSRRLGAMPMVVCAAKSYLSQYGTPAKPSDMANFSWLEYNVRPDSNF
ELIAPEGITTQISPQGRFVTNDSQTMIRWLKAGAGIAYAPLMWVIEEIKR
GEVEILFKHYHSDPRPVYALYTEKDKMPLKVQVCIDYLTEYFKRVAEVYQ
DYR
>YPTB3514 putative BolA/YrbA family protein
MNLMDTNEIKDVLMNALALQEAHVTGDGSHFQVIVVGELFADMSRVKKQQ
AVYAPLMEYIADNRIHALSIKAYTPQEWQRDRKLNGF
>YPTB3618 putative transcriptional regulatory protein
MTDVIDEIMQTEEQRRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKY
ESGMHIPPADKLITLAELLVTSIDYLLLGSSNETSSIRNTRLLERFKALS
QCQPEEQETVIKLIDAVIVKHRVESALQPVDPEKK
>YPTB1615 AraC-family transcriptional regulatory protein
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTG
VSLGKYIRERRLAGAVYQLRSSDSTIFDIALDFGFGSQSHFTYMFRKHYG
ITPYDFRQNTDIDLNIALPLHAIHQKQA
>YPTB3610 putative araC-family transcriptional regulatory protein
MEKNMQRTQVVANWYRESDEFSTLVNYRILRAGHIRAADNFHVRRQSVAG
HELIFCLNGSGFIRLENNLHEVKKGNLAWLPVRWPHEHFPNKQEPWEILW
LRIDGAKLNNIMQILDVAQQPVFEFTSPETITDIYHRLFDLMQSHTLVAD
AHCDVLCSQLIYTLLENRSFDATKSPVISHRGLGRLIYQIHSHYNDDWDI
DKFMQYCQVSKSQLFRLFQETFNQSPLRWLKNYRLSQARRLLVETEETIS
RIAGQVGYNDPLHFSRDFHRSVGLSPSDFRRQERQLDNDRHD
>YPTB2739 putative sugar kinase
MGKGLALDIGGTKIAAAVVTESGMLIGRQQIATPRGGAGQLAAALETLIA
PYRHQVDFIAVASTGIISGGRLTALNPANLGGLADFPLYDCIRSISDLPC
VLLNDGQAAAWAEYQALGDKNDNMMFVTVSTGVGGGIILNKKLLVGQRGL
AGHIGHTLSDPHGVLCGCGRRGCVESVASGTAIGAETLGWKQPVSAATVF
DMAQQGDAQAGKVINRSAAAIAQMLADMKMALDLEVVILGGSVGLAVGYL
ERVVAAQKTLPGIYRVPVQEAHHRQDSGLLGAALWARTSL
>pYV0027 hypothetical protein
MYYSVIHNGGDMAHVTSVTLGEHLTGFVGEMIQSGRYGNISEVLRDALRL
MEAREQRVQHVRDMVLAGTNVPVSHRLMDEIFSAAVKGTSV
>YPTB0803 putative deoR-family sugar uptake regulatory protein
MLQAERHKIICTHVQQQGSSLVTELSVLCQVSQETIRRDLTVLQKKQKLI
RSFGGAVALDSPEIPVIDIKEIHDGLNVIDRAESFRKRTEEHPDTKMKIA
KAALQFIRPGDCILLDNSSSCWFLARQIPDIEITVVTNSVKIIQALACRD
KVRIIGIGGEYSARHDDFHGPVAENAIRNFQINTFFFSCQGINQDSGVRD
GNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLDEVDILITNRL
SSQNYRSDNPKLNIIESDK
>YPTB1910 GntR-family putative transcriptional regulatory protein
MPGGMGGKGVDRKFIETLKTYCDDANRGGGPLYQRLEKGFRDLITRGELK
AGYAIPSERELSERLNLSRVTVRRALSELANAQVIVQRRGARSTVAGRVE
KPLSSLTSFSEDMISRGYEPGARWLQKELTHASPSEIIALNLSPGALVWR
LKRLRTVDEHPMAVEIAVVPQMFIPEMDELRDSLYSVLQLHGFMPARALQ
RIRAEPLSRDHSQLLDMPAHSPALHVERHCYLEDGRPIEYTHTWYRGDSY
DFLVELQRDITPGLS
>YPTB1830 bacteriophage hypothetical protein
MGVQGLADGFLAGFNTADQAVSRNRELGLRDAAQQQQIKDSERNYGLAKD
QVDWRKETDDRDHKYKAQRDSASDEQWNKNYGLAQANQRTANASLGLRAE
EINMRKNEFNYQRSQAERQQRMQEEMPVVQTLYKQIETTGQVDPELFGQI
SKDNPLNPSRFFGQEAINNVMEINQIMPKVLSGEVSYNDPKVLKAMNTVL
APHIQRNIDEVDPESGKKIKSKELGHIGISEDGKFVIPGLKVTYSDGSTA
NKPMTQFGSADVSDNQVAKIPIDQFMNQIRGYGQMVGQLNQPDRAKFIGS
MVNPPDKAAMRQESEGYRKELLDIGKDEGKQLAALNKDGAMMDEKQLSSA
RQEIKNNSEQRRQQASELYGVGGGRSSQNQPGIDPAELEAFVGEYQKEFG
EAPDLSSPQDQQFFIAWKQKQLQQMKEHSPSAQPGTTQSNSALDSNTAQQ
LRGLKRINGSIPR
>YPTB2719 putative two-component system response regulator
MKILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALIL
DIMLPDMSGIDVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPK
PCYPRELVARLRAVLRRFEEQPTLSSIDSGIITQGGLTLNPSTRSSEWQG
KPFDLTASEFNLLELLLRSPERVVTKDELSDKGLGRPREAYDRSVDVHIS
NIRQKLAALPGNHLNIETVRSIGYRIR
>YPTB1911 hypothetical protein
MAMAMAHSTKPAGAVTQAIADIRMVLDIEEVVVNESVGLTDGMLDRVRKS
LQAFPARFNLPVTPMLGGGTYRMTECCQRSSASVRRVHDRPGVMSR
>YPTB3394 LysR-family regulatory protein
MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLL
RRTTRRLELTEEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAA
APFMQHVIVPMITGFRALYPQITLELNTDDLNIDLLEQRTDIAIRIGALR
DSTIHARLLGASRVRLLASPNYLQRHGTPHTIEALADHSLLGFTQPEFLN
QWSLPHLPGGRSSIIPNLAASSGETLRLLALQGEGIAELSDFMTREDQLA
GRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIKLQGSHW
LRI
>YPTB1207 putative transcriptional regulator, LysR family
MRRTDHLGGITAFVTTAQQGSFTAAAEKLGLTKSAVGKSVSRLEDRLGLK
LFQRSTRRLSLTPDGERFLASCQSAIDILEQAEAELMSHICQPSGRLRVD
LPAAFGRQRILPILLDIIRLYPELALTVTFSERFVDLIEEGIDLVIRIGE
LADSSGLVARRLTTQKLVICASPDYLLYHGEPVSTDELSQHQCVVGFRRS
QPISWLLKESDGQISRFAPPPTHEFGDGDAMLAATLAGGGLSQLPLWLVG
KYLESGELREVLPGHSGGEMPISALWPKNRQLLPKIRYVVDTLVKAAEDG
LLD
>YPTB0395 putative TetR-family regulatory protein
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLY
DCLRYHSQQIDTWRRQLQLDETLSPQQKLLARYQTLSEQVQNQRYPGCLF
IAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMEL
ILEGCLSKLLIKRQLADVEVAKCLAEDILTVAQCRKNGALS
>YPTB3579 putative GntR-family transcriptional regulatory protein
MLAGMGVIKPETLRYQVENVLRQAIMSGRFTPGERLIERELCETLGVSRT
SIREALRRLEAEKLVSIVPHKGPIVAIISRQEAAELFALRGLLEGFAARE
FAQRATDVAIVHFAQAIQALRMAGMTKDRAKVLKAKTDLYDVLLDNCGNG
LVKETLTSLHSRINLLRATSLMDPQRLPVSINEIDDLYQALKARDPDAAQ
AAAERHVANAKEVALRILEETNAT
>YPTB3130 Putative [Enterobacteria phage P2] gpC-like protein.
MIVFINYYVKYRGIDNMSTSIGEKIKLIRESERLNRKQLSELSEIPYSSL
SYYESGRTVPDTTIAMKLLNHPRFQKYALWFFTDQIAPESGQIAPALAHC
GLDETIYRPSDKKTG
>YPTB1070 conserved hypothetical protein
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAER
ADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMES
EAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVV
GLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSIS
FSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDA
FRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>YPTB3048 LysR-family transcriptional regulatory protein
MDRITAAEVFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLH
RTTRKLSLTHAGEATLERCRRMLEFAQDMDLAEGQESEELRGLLRISCSQ
SLGQSALAIAVADYLRRYPQVAVDLQMNNRAINLVEERIDLALRITNELD
PNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTVHNCLTYSYFGESLW
HFDQSGVKSSVAVSGNLSANESVVLLSGALEGAGITLQPIYSVAPYIARG
ELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFLVEWFATHPKWLST
MK
>YPTB3123 Putative DNA binding (HTH) protein.
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAE
SDVYAAKTMLLRKMVNTESIAPAYIVQIRKKLGLNQREASEIFGGGVNAF
SRYEKGKALPHPSTIKLLQVLDKHPELLNEIR
>YPTB3053 Putative regulatory membrane protein.
MNTIVINDVFFTPQKRTIDRNGKVTKIRNKESELLSLLCEYYPEPISRED
IEKRLWEGSYVTDNTLTQTISNLRHALDDKKHELVVTIPKKGYRIGIKPE
IFIEGEVQCQPYEKLGIIGSSVDKMAMSFLKGKMSFYRVCLFVLGVIFFF
IFFNVALYRYQVKLVDVNSLPILINLDKEQDKTFLSVYQQHPYVLLKKKK
NGGYVVCKRQGDELVCEKK
>YPTB2680 putative luxR-family regulatory protein
MFSVAIKTRNAFYEFGLLSLLKKVLIKEDDMDYSIVPSHEKRASNNANVI
FKDLMVIVNIYQENSFIQKNDSNNNKPMMTVNIPFNSSQLGLYDVISKIK
KILNIARLNYNMMMKSDLQRRIGLKNYIQLSMTESKVVQLTGKGHSTTDI
SKILDRSEKTILTHRRNAIRKLGMFNRLEFYKYASLMRNYSNKDAVFICL
>YPTB2422 conserved hypothetical protein
MRVTKLQNMNGNISFPEQLRRGELLNVDCPSREILKRVTSRWGVLVLIAL
SNETLRFSALRRKIGGVSEKMLAQTLQHLEEDGFIDRTAYPVVPPHVEYS
LTPLGKEIQEQVEGLTVWLETNLHRIMEQRQQRSV
>YPTB3108 hypothetical protein
MFGHSKHDHRHGGHRHEGQGHCGEKMRRGGRHNVMAEDAESARGGKHGRG
RGGKMHRLFEHGDLRVVLLALLNKTPSHGYELIKAIEEASSGLYVPSPGV
IYPTLTLLEEQDFVTPVATGNGRKSYQITDAGKFELQKNQAMVDVIFARL
AQVNRHKEGNLAEGIADAMHRLRHILRSNMMRADLTPEQVARINTALLAA
VDTIEEELQPVGVQPAAVDATVQEKN
>YPTB1932 putative LysR-family transcriptional regulatory protein
MTLKQLEAFYWAARCSNFSIAAERLHISISSLSKRIVELEASLGCTLFDR
SGYRAVLTETGQNLLPRAFALLESAAEIRNTLGASEGLSGICNFGVGELS
ALTWLPSFIASARLLYPKLLLAPHVDVGAALEGRVNKGEMDFAIIAGRSS
RQNILSLPIAQAQFVWMASPTLANTVGTADSALRQALPLITLPPGAGSSR
IIDAWLMAYGIASVARINCNSWGAIVGMLIASVGIGILPTSWAEKLSLHN
QLEYLPCSEPLAALNYSFQWRRDDPRPLIRKMRVLVADLADFSLNSPLPL
NNSLPLHHSLPLHHSLPQRD
>YPTB0310 putative two-component response regulator
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPD
MVILDLGLPGMDGLDVIIQLLRRWPAMKILTLTARNEEHYASRTFNSGAL
GYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGPANTPTVLT
PRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELI
HWSYRLGLNV
>YPTB0431 conserved hypothetical protein
MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLS
RVGLVTAVRGKNGGIRLGKPADQILIGDVVRQMEPLTLVNCSSDFCHITP
ACRLKQVLNQAVQSFLKELDNYTLADMVKDNSPLYKLLLVE
>YPTB3467 Putative kinase protein
MANIVTCTTKDGETIQYVDEIIGSGSMKDVYFSPDKSYVVAFYKKPQNDQ
AKERIDMITGRYRQNIFEQSGGEYWKDLFCWPTHVVEHNGKIGIVVPTYQ
NHFFFKYGSKNNDFLGIKGREKEGKWFASANNQNKFLDPRERGNILNYLK
VCLLLTRAVRRMHAAGLCHSDLSYKNVLIDPEQGHACIIDVDGLVVPGKF
PPDVVGTPDFIAPEVVKTSHLLKEDPQRILPNITTDRHALSVLIYMYLFY
RHPLRGGKIHDMDDEVRDESLAMGERALFIEHPTDRSNAVKLNQVKPSSL
PWADPQKVPYTIMGPYLTQLFEKAFIDGLHDPSKRPTADEWETALVKTVD
LIQPCQNTACEQKWYVFSGKTKPVCPYCGTAFKGKLPILNLYSSRKAGSY
RPDDHRLMVWNGQSLYAWHVNRLIAPNERTSEAQKKRVGYFVFHNDQWWL
VNEGITGLMSLPDKKTIGIGEKLALTDGAQLVLSTEEGGRLVVVQLVAN
>YPTB2544 conserved hypothetical protein
MEIRTATPADFAEIWPLFQAVIRSGDTYVFTPETPEQDAYDYWFGRGVRC
WVAVHEQRIVGMYKLIDNQRGLGAHVANASFMVDQKVRGLGIGKALGLHC
IDQATTLGYRAIQFNFVVSTNTLAVALWQKLGFKIIATLPEAFNHRQLGY
VDAYVMHRVLVPTQS
>YPTB2239 putative DNA-binding phage-related protein
MKKTDDFDIIPFAVVKAAALSHPQVNDAYTDLQIRQAMMTELKAARQQCN
LTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALGGTFVFQFNPN
SSYATKE
>YPTB0346 putative exported protein
MLLSTKQFRHYTLALLLASGKPVDADDIYDKLSCSGPTLTRALKELRETY
NAEIRYSKSTHSYQLTEKGTLTPKVLRHIKDAIASHMIIKSHEELVASHV
ILDKEKKRSISLSLRMSVIRKIDRVVNQLEITRSEAVEILVNTYISELML
SVSQPPKGKKSV
>YPTB2054 putative DEAD box family helicase
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTG
KTFAYLAPALRADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALL
KGRSNYLCLERLEQQSLAGGDLASETLVDLVRLRGWSAETVDGDISTCGQ
VAEDSFVWPLVTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHL
FLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQQLTSRQLMDL
AKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME
QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAAFERATVYRNRLKRLK
DVRTPGYSYWYECNSRHFVLALTPLSVSDRFRELIEEKPGTWIFTSATLS
VNDQLSHFTLRLGLTHAKTLLLPSPFDYANQALLCVPRNLPSANEPGAAR
KLAVLLKPLIDANQGRCFFLCTSHQMMRGLAEEFRASMTLPVLVQGETSK
GQLLAQFVAAGNALLVATSSFWEGVDVRGDALSCVIIDKLPFTSPDDPLL
KARIEDCRLRGGDPFNDVQLPDAVITLKQGVGRLIRDIDDRGVLVICDNR
LVMRPYGAMFLNSLPPAPRTRDLAKAIAFLKQRD
>YPTB0011 GntR-famly transcriptional regulator
MQLNTQQQAAQRNLSYLLAEKIGQRILAGEYEAGSILPGEIELGEQFGVS
RTAVREAVKMLAAKGMLLPRPRIGTRVMPQTNWNYLDQELLTWWMTKENF
DQVMQHFLILRTSLEPQACYLAATHANEKQRELLASLVAEMRALHSNFNR
EQWIQVDTQFHKLIYEASGNPFLISFANLFSSVYYSYFRAITGDEVIKLQ
HHQNIVDTILAGDNQGALFACQVLLKTVD
>YPTB2519 LacI-family transcriptional regulatory protein
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESIN
YHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKN
GINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVI
TTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELT
SLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKA
AKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDI
QDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>YPTB2292 TetR-family transcriptional regulatory protein
MNKIQHTHVDTREHLLATGERLSLRLGFNGMGLSLLLTTAGIPKGSFYHY
FRSKEVFGEAMLQRYFDRYDAEMESLLAGSQGDKRHHLLHYFAQSIANYC
GSECHNACLAVKLSAEVSDLSEPMRHALDIGTARVIGRLQDAIEAGIDEG
SLRTVLSPAATAETLYALWLGASLRAKVKHSVAPLTCALGSIELILQPA
>YPTB0985 acrR, putative transcriptional repressor for multidrug efflux pump (TetR/AcrR family)
MARKTKQKAEETRQQILDAAVREFSAHGVSRTSLTDIAIAAGVTRGAIYW
HFKNKVDLFNEVWELSESKIDQLEIEYQAKYPDNPLRILRELLIYILVST
REDRRRRALMEIVFHKCEFVGEMTSVHDARKVLDLASYERIESVLQGCID
ANQLPVNLNTHRAAIIMRAYITGLMENWLFMPESFDIKQEAPVLIDAYLE
MLGQSFSLRNEMNSRVSD
>YPTB2177 araC, arabinose operon regulatory protein
MYQRMVQEPQPNPLLPGYTFNAYLVAGLTPILADGPLDFFIDRPGGMKGY
ILNLTIKGQGKIFDGENTIYSNPGDLLLFPPKSPHHYGRSPNSDCWYHRW
VYFRPRAYWADWLEWHSKTHEVGRLSLPNNNLMLEFDRLFANIEQTQKSG
RRFGEELGMNLLERLLLRAMEEDPLSPQRIMDPRIIEACQFITGNLAGEL
RIDEVARHVCLSPSRLAHLFREQVGINILRWREDQRVIRAKLLLQTTQEP
IATIGRVVGYDDQLYFSRVFRKRVGVSPSDFRRRSIETNYPQRTFRPADW
QDNQGALVRV
>YPTB0601 arcA, response regulator (OmpR family), in two-component regulatory system with ArcB (or CpxA), regulates genes in aerobic respiration
MQTPHILIVEDEIVTRNTLKSIFEAEGYVVYEANDGAEMHHILSENDINL
VIMDINLPGKNGLLLARELREQASVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLSSVGEERRLVESYKFNGWELDINSRS
LVSPTGEHYKLPRSEFRAMLHFCENPGKIQSRGELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLEE
>YPTB0459 argR, arginine repressor
MRNPAKQEDLIKAFKALLKEEKFSSQGEIVLALQEEGFENINQSKVSRML
TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDVDYNDSVVVINT
SPGAAQLIARLLDSLGKAEGILGSIAGDDTIFTTPARGFTVKQLHEAILR
LFEQEL
>YPTB0786 arsR, arsenical resistance operon repressor
MTTLTPLQLFKNLSDETRLNIILLLKASGELCVCELCHRLNEAQPKISRH
LAMLRASGLLLDRRAGKWVHYRLSPHIPAWAAAIIEQTYLSQRDEITLLA
QGNVTPDSKMLCN
>YPTB0002 asnC, transcriptional regulator
MSEIYQIDNLDRSILKALMENARTPYAELAKNLAVSPGTIHVRVEKMRQA
GIITAACVHVNPKQLGYDVCCFIGIILKSAKDYPSALKKLESLEEVVEAY
YTTGHYSIFIKVMCKSIDALQQVLINKIQTIDEIQSTETLISLQNPIMRT
IVP
>YPTB2818 baeR, two-component system response regulator
MHESLLSASQSGSVLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVAT
VRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRLLG
LEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQ
ASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDYRVVTDRTI
DSHIKNLRRKLELLDGEKPFIRAVYGMGYRWEAEMCRLL
>YPTB0469 basR, two-component system response regulator
MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIIL
DLGLPDQDGTLLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLV
KPFALAELLARVRALIRRYQGQSDNLVQQDDLSLNLSTQQVCLQGQPLEI
TPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDDLSSNTLEVHIHNLRRK
LGKDRIRTVRGIGYRLEALS
>YPTB1197 betI, TetR-family regulatory protein
MPKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVSNGIISHYF
RDKNGLLEATMRYLIRHLGEAVKQHLAALSVNDPRARLRAIAEGNFDDSQ
INSAAMKTWLAFWASSMHSPQLYRLQQVNNRRLYSNLCAEFKRCLPREQA
QLAAKGMAGLIDGLWLRSALSGEHFNRQEALLIIHNYIEQQLNIKYKC
>YPTB2928 celD, cel operon repressor
MDVRLVRERDFFNGKEFHLFIYNKTESATGLHQHDYYEYTLILTGMCYQE
INGKRVFLERGDFIFIPLGSHHQSFYEFGATRILNVGISKAFFEEHYFHL
LSRPIVASQAYRLRGDFLSYIESAISAPHYRENEQTELLELLTFYVTNRI
SHYKESEVNDDIPSWLKATIDKMHDNAMFSEKALVNMVELSGKTQEYLTR
ATRRYYQKTPMQIINEIRINFAKTQLEVTNYLVSDIAFEAGYSDTTLFIK
NFKKLTSFTPGNYRKNFYSARESLSH
>YPTB2438 cobB, putative Sir2 family protein
MRIRHRLCRFRKSKHVRHQRFRSRIFHRDSAVAKEMKKPFVVVLTGAGIS
AESGIRTFRADDGLWEDHRVEDVATPEGYRRDPELVQRFYNERRRQLQQP
DIAPNAAHFALADLEAVLGDNLVLITQNIDNLHERAGSKRVIHMHGELLK
VRCTQSGQVLDWQGDLSADERCHCCQFPSPLRPHIVWFGEMPMGMDDIYQ
ALAEADFFISIGTSGHVYPAAGFVHESHLHGAHTVELNLEPSQVESQFDE
KHYGLASKVVPEYIREFLTTCGENRQGD
>YPTB1993 copR, transcriptional activator
MRLLLVEDEEKTSSYINRALSELGFTVDVAATGNDGLYLALEYDYDTIVL
DVMLPGMDGYSVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPK
PFSLIELVARIQALLRRRPSDGVDVSQLHINDLHLDLLARRVTRAGERLE
LTAKEFALLSLLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRA
KIDTPYPVKLLHTVRGMGYVLETRPDRQTK
>YPTB0070 cpxR, two component system response regulatory protein
MHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLL
DIMMPRKNGIETLKELRQHHQTPVIMLTARGSELDRVLGLELGADDYLAK
PFNDRELVARIRAILRRSNWSEQQQNAEQGAPTLEVDCLQLNPGRQEASF
EGQPLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPDRKDGLPWFKTLRGRGYLMVSET
>YPTB3171 creB, Putative response regulator CreB family.
MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALA
IVDVGLPDINGFDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDY
IAKPFSPREVSARVRTILRRLQKSHLLAVTSTSYQFGHFSLDEAGARVTY
HQQILGLTRYEYLLLKTLLLAPERIFSRQQLMDIVWAQAEESQDRTVDTH
IKTLRSKLRTVYAEDSPIRTHRGLGYSLGYQP
>YPTB2426 cscR, sucrose operon repressor LacI-family
MVSLKEVANLASVSLMTASRAINSPEQLRPETYQRVMQAIESLNYVPDFA
ARKMRGHATKTSTLAVLAWDTATTPFSVEILLSIELTAREFGWNSFLVNL
TSREDSQRALNQLLAQRPDGIIFTAMGLRQVTIPERFRDKNIVLANCVSE
SHSIPSYIPDDFDGQYQAMKLLLQRGYQRPLCIYLPECTLAGKARRAGVE
KAWQESALPTEQLNQCHIAWGDEHYQDVIPLLERHCPKGKPNFDVLICGD
DRIAFLAYQVLLAKGVVIPQQVAVIGYGDMVGIGELYLPPLTTVQLPYYD
IGRQAALHLIRGRESRAIHRLPCPLLERGSIRDSMPNNCVPLFSKQR
>YPTB1423 cspB, cold shock-like protein
MTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDV
EFSTYRSIHGPSAADVIAF
>YPTB2950 cspB, cold shock protein
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQN
VEFSIEQGQKGPSAVNVVAL
>YPTB2414 cspC, cold shock protein
MSNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQN
VQFSIENGAKGPSAANVTAI
>YPTB1624 cspC, cold shock protein
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV
EFEIQDGQKGPSAVNVTAI
>YPTB1392 cspD, cold shock-like protein
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQIVNF
DVHEGPKGNHASLIVPLELNSVPPLDGVSPPELAILA
>YPTB1088 cspE, putative cold shock protein
MSKIKGSVKWFNESKGFGFITPEDGSKDVFVHFSAIASNGFKTLAEGQRV
EFEITNGAKGPSAANVIAI
>YPTB3585 cspa1, major cold shock protein Cspa1
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQN
VEFSIENGAKGPSAVNVIAL
>YPTB3586 cspa1, major cold shock protein Cspa1
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQN
VEFSIENGAKGPSAVNVIAL
>YPTB3587 cspa2, major cold shock protein Cspa2
MSNKMTGLVKWFDAGKGFGFITPADGGKDVFVHFSAIQSNDFKTLDEGQN
VEFSIENGAKGPAAVNVIAL
>YPTB1023 cueR, putative merR family copper regulatory protein, cueR
MNISDVAKKTGLTSKAIRFYEEKKLVTPPVRTDNGYRSYTAKHIEELTLL
RQARQVGFTLDECRELLALFHNPARHSADVKAATLLKVAEIEQHINDLNQ
MRMRLLALAEECPGDEGADCPIINSLAGCCHSSSSLPLK
>YPTB2141 cysB, cys regulon transcriptional activator
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFA
RSGKHLTQVTPAGLEIIRIAREVLSKVDAIKAVAGEHTYPDKGSLYVATT
HTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATE
ALHLYDDLIMLPCYHWNRAVVVKPDHPLAGKTHVSIEELAAYPIVTYTFG
FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP
VQDPDLVTVDARDIFTYSTTKIGFRRSTFLRSYMYDFILRFAPHLTRDVV
DKAVALRSNEDIEAMFNDIKLPVK
>YPTB0100 cytR, LacI family transcriptional repressor, CytR
MTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKVEQAVLAVGYSPHAL
SRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLILIGDCAQQ
TQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMVMANEFAPE
LELPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSHYRLQGYIQ
ALRRNGITVDNDYIIRGDFSYEAGAQSFAALMELPHPPTAIFSHNDVMAV
GAIWQAKQLGLRIPQDVSLVGFDDLKLSQFCDPPLTTVAQPRYQIGQQAM
LLLLEQLQGHSVQSGSRLLDTELIIRESTAAPKH
>YPTB1652 dbpA, ATP-dependent RNA helicase
MSTTSFSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKT
GSGKTAAFGIGLLDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQ
NIKILTLCGGQPMGHQLDSLVHAPHIVVGTPGRIQEHLRKKTLVLDELKT
LVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPSGIEQISARVQ
RQPLNVEVGDTDEEPAIEQVFFETTREKRLPLLISVLSYYQPASCVVFCN
TKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKDLELVINFELAFDPEIHVHRIGRTGRAGMSGLAVSLCTPQE
MVRAHTIEDYLQIKLKWTPAEQVSRSTNIMLEPEMVTLCIDGGRKAKIRP
GDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRALQQLQQGKIK
GKNCKARLLK
>YPTB0486 deaD, cold-shock dead-box protein A
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGM
AQTGSGKTAAFGLPLLHNIKADLKSPQVLVLAPTRELAVQVAEALSSFSK
HINGVNVVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGTLNLSN
LSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEAIRRITR
RFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAEDFDAA
IIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDI
LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF
VENRERRLLQNIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQQLESS
DLDMYRALLAKLQPEEEFDIETLAAALLKMAQGERPLILPPEAPRRPQRE
FNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGERPARRERRDVGEM
ELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKG
MPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGRP
FSGERREGAGAPPRRSFSGDRAPTGGGERRGNRDGQRSAAPRRDDAAAPA
AAAAAPARRRFGDA
>YPTB1353 deoR, deoxyribose operon repressor
METRRAERINKLIQALKRSDKIHLKDAANLLRVSEMTIRRDLSAEPTSVI
LLGGYVVMDPKSNNANNYFVSDQQAKQVEEKRRIGQLAAQLIIENDTVFF
DCGTTIPWIIDEIDEELAFTAICYSLNTFLALQDKPNCKVILCGGEFKPN
NCIFTPLSQQSELDNICPNKAFISAAGVSIEYGATCFNFDEILLKHRAMA
KSQYKILVADHSKFGKIKPASIGTLAQFDALVTDRPPVAEFYLFFSQHSV
KIYC
>YPTB1245 dinG, putative ATP-dependent helicase DinG
MALSSAVKEQISQWYKALQQQIPDFISRAPQRQMIAEVAKTLSGDAGRHL
AIEAPTGVGKTLSYLIPGIAVSRAENKPLVVSTANVALQDQIYSKDLPLL
KKIIPDLKFTGAFGRGRYVCPRNLAAMCTDVSGQGDLSLFLGDELAPANG
EEQATCLALSKSLNSYVWDGLRDHHQLALSDSLWAKLSTDKANCLGRNCH
YFRECPFFIARKEIESADVVVANHALVMAALETESVLPNPKELLLVLDEG
HHLPDVARDALEIEGEITAVFANMQLDMIVRLVDQCLVQYRPKNPPGLAH
PERLKDHCEQLRELMLSVEQQVSQLLPTEGNPAVYRFEMGDLPESLTESC
AKLFKLTDALRGVAEFVLNDLSEQTGKHDIVRLHRAMIQMSRTLGYLEAM
SKLWRLAAMEKASNAPISKWVTREYRDNQTHIYFHCVGIRVSDQLDKMLW
RKVPHVIVTSATLRSLNSFARLQEMSGLSEKAGDRFETLSSPFNHIEQGK
LIIPKMRFEPTMANEAEHLAEMAQFFRAQHASGRHKGMLILFSSHRAMQT
FLSHVTDLRLMLLVQGDQPRYRLVEEHRKRVNNGTASVLIGLQSFAEGLD
LKGELLTQVHIHKIAFPPIDSPVILTEGEWLKSLKRYPFEVQSLPSASFN
LIQQVGRLIRSNECRGEIVIYDRRLLTKGYGARLLAALPVFPIEQPDMPE
GPLVTPTAVKGPAKRTKRVRKTRDKP
>YPTB0857 emrR, transcriptional repressor of for multidrug resistance pump (MarR family)
MESSFSPIEQMLNSRAKRQKDFPYQEILLTRLSMHMHSKLLENRNKMLKA
QGINETLFMALITLDAQESRSIQPSELSAALGSSRTNATRIADELEKKGW
IERRESHNDRRCLHLHLTEAGIEFLHQLLPPQHKCLHFLWSTLTEQEQQQ
LEMLTRKLLTRLDQMEISEQ
>YPTB3480 exuR, exu regulon transcriptional regulator
MEFTETRRLYQQLAAELKRRIEAGVYPVGDKLPAERYISEEMNVSRTVVR
EAIIMLEVEGYVEVRKGSGIHVMSNQQKHLVTNQGIEFDTAGPFELLQAR
QLIESNIAEFAATQVTRQDIVQLIEIQKHARQEDRFRDSQWDLKFHVQVA
LATQNTAMATIVEKMWSQRTHNPYWIKLHEHIDDVSIESWCEDHDKILEA
LIRKDPHASKLAMWQHLENTKQMLFRATTDDFEFNVDRYLFTENPVVHLD
NLMNNSKVPISSKN
>YPTB2072 fadR, fatty acid metabolism regulatory protein
MVIKAQSPAGFAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHDSVPQLIDN
LLAVRTNIATIFVRTAIRHHPEKAQEILARAKTVDDNAEAFTALDYGIFR
GLAFASGNPIYGLILNGLKGLYTRVGRYYFSNPEARKLALTFYNKLSTLC
DTESYDQVLECLRTYGKESGAIWHSMQGTMPSDLAEARR
>YPTB3577 fiS, DNA-binding protein Fis
MFEQRVNSDVLTVATVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVSDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>YPTB1670 flgM, negative regulator of flagellin synthesis
MSSIDRTQPLSPVTQVQARESHDVAQQTRQSATQTKTPVSGTEVKLSDAQ
AKLMQPGSQDINVERVETLKQAIRSGQLTMDTGKIADALLKNVADELKNH
>YPTB3320 fliA, Putative RNA polymerase sigma factor for flagellar operon
MENREFEACLTLTAAEEGKYLNAYLPLVKRIVRQLSFQADSVIGKEDMQQ
IALMGLLEALRRYGHPDGQFAAYAVHRIRGSILDQLREHDWRPRRLRQKT
HKTNEAIRQIAKRLGHEPNFEEISAELNLTADEYQEYLLLENAGAMESLD
EILALDAHNDILQSRDLEENIIIEDNLKQAISALDEREQMILHLYYQQEL
SMKEIAQVLDLTEARICQLNKKLVQKIKSFF
>YPTB1715 fliA, RNA polymerase sigma factor for flagellar operon
MSDLYTAEGVMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGI
GLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREV
ASAMQQVEQRVGRPATEQEVAQVLDIGLVEYRQILLDTNNSQLFSYDEWR
EEHGESVEPLLEGHEDANPLKHLLEGNLRQRVIEAIEALPEREKMVLTLY
YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARLNNDA
>YPTB0677 fruR, putative transcriptional regulator for the control of carbon and energy metabolism (GalR/LacI family)
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVDKVMAVVREHNYHPN
AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE
DQPDNEMRCVEHLLQRQVDAIIVSTALPPEHPFYQRWAKDPFPIIALDRA
LDREHFISVVGADQEDAQMLAQELRSFPAESVLYLGALPELSVSFLREMG
FREAWKDDPRKVEYLYANSYEREAAGVLFAEWLKTHPMPQALFTTSFQLL
QGVMDVTLKQSGRLPSNLAIATFGDNELLDFLECPVLAVAQRHRDVAERV
LELVLASLDEPHKPKPGLTRIRRNLFRRGTLSLSRR
>YPTB3044 galR, galactose operon repressor
MATIKDVAKLAGVSVATVSRVINHSPKASEASRVAVCKAMEQLQYHPNAN
ARALAQQSTETVGMIVSDVSDPFFGAMVKAVEQVAYATGNFLLIGNGYHD
AEKERQAIEQLIRHRCAALVVHAKKLPDDELTSLMEQIPGMVLINRTLPG
FEPRCIALDDRYGAWLATRHLIQQGHKRVAFICSNHQISDALDRMQGYLD
ALKEFDIPVDERLITYGTPDELGGEQAMTDLLGRGKHFTAVSCYNDSMAA
GALSVLSDNSIDVPQEISLIGFDDVLISRYLRPRLTTIRYPVVAMSTQAA
ELALALANNTPLPEITNMFSPTLVRRHSVASPPSLRDDTD
>YPTB3017 gcvA, glycine cleavage system transcriptional activator
MSKRLPPLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGL
KLFRRRNRSLLLTEEGQSYYLDIKEIFTSINEATRKLQARSAKGALTVSL
PPSFAIQWLVPRLSGFNAAYPGIDVRIQAVDREEDKLADDVDVAIFYGRG
NWSGLRTERLYAEFLLPVCAPSLLTGENGLKVPSDLANHTLLHDTSRRDW
LAYTRQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIALVNNVMAQSEIEA
GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARAASEQEKLR
FRYEN
>YPTB3779 glpR, glycerol-3-phosphate repressor protein
MKQTQRHDAIIELVRLQGYVSTEELVEHFAVSPQTIRRDLNELADQNKIH
RHHGGAALPSSSVNAAYNDRKVMWSEEKARIAQRVASQIPDGATLFIDIG
TTPEAVAHALMNHKGLRVVTNNLNVATLLTAKEDFRLILAGGEVRTRDGG
IIGEATLDFISQFRLDYGILGISGIDMDGSLLEFDYHEVRTKRAIIENSR
CVMLVTDHSKFGRNAMVNLGNMNLIDYLFTDQQPPASVMKIIEQHEVQLE
LC
>YPTB3798 gntR, gluconate utilization system Gnt-I transcriptional repressor
MKKKRPVLQDVADMVGVTKMTVSRYLRNPEQVSAVLQEKIALALDELGYI
PNRAPDILSNATSHAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAH
YGYQKEREEQRLTSLLSYNIDGLILSERHHTARTLKMIEVAGIPVIELMD
CISPCLDLAVGFNNFEAARQMTQQIIAKGHRYVVYFGARQDERTVIKQQG
YEQAMRESGLVPMSVMTSRSSSYSAGAELLREAQVSYPQIDSIFCTNDDL
AIGAVFECQRQGLSIPHDMAIAGFHGHDIGQSMVPKLASVLTPRERMGQI
GAERLLARLRGEVVTPQMVDVGFTILPGGSI
>YPTB0471 greA, transcription elongation factor
MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHA
AREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTE
EEQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEY
EILSVEYV
>YPTB3765 greB, transcription elongation factor
MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYI
YGKKRLREIDRRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVENEQEE
QRIFRLVGPDEFDPAKKWISIDSPVARALIGKQVDDEVTVQTPNGEATYW
ILEIRYRPFDEDRPFNEDIDN
>YPTB2048 hexR, hex regulon repressor
MNTLENIQNSMDLLSKSERKVAEVILASPQTAIHSSIATLAKMANVSEPT
VNRFCRRLETKGFPDFKLHLAQSLANGTPYVNRNVEEDDSVAAYTGKIFE
STMASLDRVKNNLDIAAINRAVDLLTQAKKISFFGLGSSAAVAHDAMNKF
FRFNIPVIYFDDIVMQRMSCMNSSEGDVVVLISHTGRTKSLVELAQLARE
NDAAVIAITSCDTPLANEATLSLLLDVPEDTDMYMPMVSRIAQLTLIDVL
ATGFTLRRGAKFRDNLKRVKEALKESRFDKDSLPVNNGD
>YPTB1636 hpcR, homoprotocatechuate degradative operon repressor
MHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSIDFHG
LARQTCILRPSLTGILTRMERNNLIFRLKPVNDQRKLYVSLTQEGQNLYD
NARPQVEEGYRLIEAAFSPDKMAQLSLLLDEFITVGNKHRQANEMSENEM
LEDEE
>YPTB1967 hutC, putative GntR-family transcriptional regulatory protein
MAEQSTVLQLSAAMDDIPAPIYQRVKLAIIRQIRTGTWQPHQRVPSESEL
VTELGVSRMTINRALRELTNEGFLIRMQGVGTFVAEAKAHSALLEVHNIA
DEIAARGHRHSSQVLHLEARPASPEEAIALGIQPGQQLFYSQIVHYENDF
PVQVENRCVNPSTAPDYMKQDFNQITPYSYLTQAAPLTEGEHIVEAVMPS
PIERQLLELSEHEPCLLIRRRTWYRKAIVTAAQLLYPGPRYQLYGRFTPQ
GTVTS
>YPTB3191 iciA, Chromosome initiation inhibitor
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPL
LVRTVPPRPTEQGQKLLALLHQVELLEEEWLGNDNGVDTPLLLSLAVNAD
SLATWLLPALKPVLADLPIRLNLQVEDETRTQERLRRGEVVGAVSIQPQP
LPSCLVDQLGALDYLFVASKAFAERYFPNGVTRSALLKAPAVAFDHLDDM
HQAFLQQNFDLSPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELA
SGELIDLTPGLLQRRMLFWHRFAPESRTMRKVTDALLSYGRQVLRQDSFI
GQ
>YPTB0144 ilvY, LysR-family transcriptional regulatory protein
MDLRDLKVFLHLAESRHFGRSAKAMHVSPSTLSRQIQRLEETIGQPLFLR
DNRTVQLTDAGNQLKAFAQQTLLQYQQLLHALGQHGPSLSGELRLFCSVT
AAYSHLPPILDRFRARHPLVEIKLTTGDAADAVNKVQSNEADLGIAGRPE
VLPTSVAFTQIGEIPLVLIAPALPCAVRSQVAVEKPDWAMIPFILPEHGP
SRKRIDLWFRRQRITNPLIYATVSGHEAIVSMVALGCGVALIPSVVVDNS
PEPVRNRISLLDDVSLVEPFELGVCVPKKRLQEPLIDAFWGLL
>YPTB2367 kdgR, IclR-family transcriptional regulatory protein
MAIADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMPKSTVYR
FLQTMKSLGYVAQEGESEKYSLTLKLFELGAKALQNVDLIRSADIQMREL
SNETRETIHLGALDEDSIVYIHKIDSMYNLRMHSRIGRRNPLHSTAIGKV
LLAWRDRGEVEEILSHIEFTRSTKYTLDSTAALLPVLDKVREQGFGEDIE
EQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFAEDRKSDYVKSLHCAAR
NISEQMGYRDYPF
>YPTB2920 kdpE, two-component regulatory protein response regulator KdpE
MRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNYIQD
LRQWSAIPIIVLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVAL
RRHSGASQESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLTALLAN
AGKVITQRQLLNQVWGPNYVEHSHYLRIYMGHLRQKLEADPTRPKHLLTE
TGVGYRFIP
>YPTB3094 lacI, LacI-like transcriptional regulator.
MKSKSTTLEDVARHAGVSYQTVSRVLNKSAKVSEATRRKVEQSIELLRYV
PNRLAQQLVGKQSMTMGLVTTSLALHAPSQVAAAIKRYAHIEGYQVLISM
IDESVNQSIQHSINDLKSQWVGKVIINVPLETAVAEKIAADNDDVTCLFL
DVDPYSSVFNVSFNPADGTRASVKYLYELGHREIALLAGPKQSVSANLRL
KSWLETLADYGLSPVSVIHGNWDAQSGYSGALQMLRETPQFSAVLVANDQ
MALGVLSAFHQNQLAVPGEKSVIGYDDTYESSFFYPALTTVSLDLDLQGK
EAVRRMLSASDNESMRSSSILPAKLVVRNSTGPQAKEHRDLQKIAEELRL
IAQRLAS
>YPTB0673 leuO, putative transcriptional regulator of leucine biosynthesis (LysR family)
MSEYNLVTDSQATKKESIDVHLRSVDLNLLTVFDAVMQMQNVTRAAQSLG
MSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARARQLFGPVRQALQLVQ
NELPGAGFEAKNSERLFNLSICSPLDVRLAAQIVQRVKQSAPNVQLVIKS
YLNDNIEHQLRYQETEFVIGYTEFDRPDFHRIPLFKDELVLAVSKDHPRI
NDSITENQLLSESHAVVSLDKKGSFSEPYYDSTTSTQSIAYESTDMNSVL
NIVSQTYFVAIAPRWLVKTYSEALNLKLISLPWENTSRACYLTWHESTDR
DKGHQWMKALLGQFSSPV
>YPTB0370 lexA, LexA repressor
MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLLAQQHIEGHYKV
DPSLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNIVHLLPENSEFQPIVVDLREQSFTIEGLAVGVIRNGD
WI
>YPTB1400 lrp, leucine-responsive regulatory protein
MIDNKKRPGKELDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR
RLERQGFIHGYTALLNPQYLDASLLVIVEITLNRGAPDVFEQFNAAVKNL
EEIQECHLVSGDFDYLLKTRVPDMSAYRTLLGETLLRLPGVNDTRTYVVM
EEVKQSNRLVIKTR
>YPTB3046 lysR, transcriptional activator protein LysR
MPAISLRQIEIFHGVMTTGNLTEAALLLQTSQPTVSRELARFEQLVQLTL
FERVRGRLYPTVQGLRLFEEVQRSYYGLDRIKQAAEGIRQFQHAQLSIAC
LPVFSQSLLPAVCKPFIDRYPEVSLNVIPQESPLLEEWLSAQRHDLGFTE
NTQTPAGTQRHTLMTVNEVCVLPADHPLREKSVLTPQDFNGENFVSLSVT
DSYRQLLDNLFAEEKVTRRLVMETHSAASVCAMVREGVGVSIVNPLTALD
YLSKGRGSGVCVRPFSVDIPFTVSLIQPLHRPSSTLVDTFVGHLKQQTTL
FQQRLATVIAPAC
>YPTB3776 malT, maltose regulon positive regulatory protein
MLIPSKLSRPVRLQNTVVRDRLLVKLSSAANYRLTLINCPAGYGKTTLIA
QWAADQSNLGWYSLDESDNQSERFATYLIAAIQLATGGHCSKSEALSQKH
QYANLSALFSQLFIELSNWDGPLYLVIDDYHLITNDAIHEAMRFFLRHQP
ENLTLIILSRTLPSLGIANLRVRDQLLELGMQQLAFNHHEAQQFFECRLS
SPLEQGDSSRLCDEVEGWVTALQLIALSSRQPNSSAQKSAKRLAGLNASH
LSDYLVDEVLDQVDSKARAFLLRCSVLRSMNDALIVRLTGEDNGQQLLEE
LERQGLFIHRMDDSAEWFCFHPLFATFLRQRCQWELALELPELHHAAAEG
WMALGYPAEAIHHALAAGDVGMLRDILLQHAWSLFHHSELALLEQCLTAL
PYPLLVQNPELALLQAWLAQSQHRYSEVNTLLEQAELAMQERKIPVDEIL
RAEFGALRAQVAINAGKPDEAEKLATDALKYLPMAHYYSRIVATSVTGEV
HHCKGELARALPMMQQTEQMARRHEAYHYALWALLQQSEILIAQGFLQAA
YETQEKAFELIREQHLEQLPMHEFLLRIRSQVLWSWSRLDEAEEAARKGV
EILANYQPQQQLQCLAMLAKCSLARGDLDNANVYIQRCEALQHGSQYHLD
WITNADKPRVIHWQMTGDKVAAASWLRQTEKPGMADNHFLQGQWRNIARV
QIILGRFDEAEVVLDELNENARRLRLTSDLNRNLLLSNTLYWQTERKGEA
QKALIESLTLANRTGFISHFVIEGEAMAQQLRQLIQLNALPELEQHRAQR
ILKDINQHHRHKFAHFDEIFVDKLLTHPQVPELIRTSPLTQREWQVLGLI
YSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQMM
GYV
>YPTB0104 metJ, transcriptional repressor protein
MAEWNGEYVSPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDP
DTWEY
>YPTB0247 metR, lysR-family transcriptional regulatory protein
MIELKHLRTLQALRNTGSLAAAATQLHQTQSALSHQFSDLEQRLGFRLFV
RKSQPLRFTTQGEILLQLAEQVLPQIKQALQTCNEPHQTALRIAIECHSC
IQWLTPALDNFHKHWPQVTMDFKSGVTFDPQPALQQGELDLVLTSDILPR
SGLHYSPMFDFEVRLVLAPDHPLANKDRIEPEDLAPEVLMIYPVQRQRLD
VWRHFLQPAGVSPSLKNVDNTLLLIQMVSARMGIAALPHWVVESFERQGL
VVTKTLGEGLWSRLYAAVRDGEQRQPVTEAFIRSARQHACDHLPFVKDAV
RSNAGVPTAKPLSPQLQ
>YPTB2443 mfd, transcription-repair coupling factor
MSQQYRYSLPERRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQ
TALRLRDEIQQFSPQPVSTLSDWETLPYDSFSPHQDIISARLSCLYHLPA
MKRGVIILPINTLMQRVCPHEFLHGHALVMKKGQHLSRDKLRAQLEQAGY
RSVEQVMEHGEFATRGALLDLYPMGSNEPYRIDFFDDDIDSLRVFDVDSQ
RTLVEVEQINLLPAHEFPIDKAAIELFRSQWREQFEVRRDNEHIYQQVSK
GIWPAGIEYWQPLFFSQQLPTLFSYLPENTLLVNTGDLESSAERFWQDVN
QRFESRRVDPMRPLLAPESLWLRVDALFNELKEWPRVQLKTEAQPAKAAN
TNLCYQPLPDLSVQAQQKAPLDNLRRFIESFHGSVVFSVESEGRRETLQD
LLARIKLSPTLITTLSQVANPGHYLMVGASERGFLDTDKQLALICESDLL
GERVSRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLE
AGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADDNAPLHRLGSDVW
SRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKHDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK
QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAA
EGKIDILIGTHKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVIRE
AILREILRGGQVYYLYNDVENIEKVTQKLAELVPEARIAIGHGQMRERDL
ERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSN
QTEIEMRMPVLLPEDFISDVNIRLSFYKRIASARNETELDELKVELIDRF
GKLPDPARYLLHTAELRQQAQKLGIKRIEGNERGGFIEFGENNKVDPVYL
IGLLQRQPQIYRLEGPTKLKFMQDLSDRAQRLKFITELLAAFAQHRIA
>YPTB2190 mlc, putative ROK family transcriptional regulatory protein
MIMDGQPGHIDQIKQTNVGAVYRLIDLLGPISRIELSKRAQLAPASITKI
VRELVEVHLVKETEYQDVGSRGRPAIGLVLDTEAWHYVSGRISRGTITLA
LRDLSSKLVVEEQIPLPDRPPEPLLSRILNEVDQFFIRHQKKLERLTAIA
ITMPGIIDAPAGIVHKMPFYDVNEMSLGPALEQRTGLPVYLQHDICAWTM
AESLYGASRGCQNIIQVVIDHNVGAGVITSGRVLHAGSRSVVNIGHTQVD
PYGKRCYCGNHGCLETVASIDNMLAIAQQRLNSSMSSLLHHTPLSVESLC
DAALAGDQLAKDIILGVGHSVGRIIAIMVNLFNPEKILVGSPLNKASSIL
HPAIASCIRQQALPAYSENILVESTEFFNQGTMPGAALVKEALYNGSLLV
KLLQG
>YPTB3920 mtlR, mannitol operon repressor
MIEKKQAFENRVLEHLNAGKTVRSFLMAAVDLLAEALNILVVQIFRKDDY
AVKYAVEPLLVGDGPLSELSVRLKLVYALGVITRHEYEDAELLMALREEL
NHDGTEYRFTDDEILGPFGELHCVDELPPVPTFLRPDEADASLIAMQRQR
YQQMVRSTMVLSITELLSRISVKQVSKLSPLSQG
>YPTB1117 nagC, putative N-acetylglucosamine regulatory protein
MSTGGQAQIGNVDLVKQLNGAVVYRLIDQQGPISRIQIADLSQLAPASVT
KITRQLLERGLIKEVDQQASTGGRRAISIVTENRQFHTVAVRLGRNDATI
TLFDMSGKSLGEEHYALPERTQETLEHALFNIISQFIDAYQRKLRELIAI
AVILPGLVEQSKGIVRYMPHISVSNWPLVDNLQARFNVTSFVGHDIRSLA
LAEHYFGATRDCEDSILVRLHRGTGAGIIVNSQIFLGSNGNVGEIGHIQI
DPLGDRCYCGNFGCLETVASNAAIENRVKHLLTQGYPSKLSLDDCHIGAI
CKAANRGDLLACEVIEHVGRYLGKAIAITINLFNPQKVVIAGEIIEAEKI
LLPAIQGCINTQVLKNFRQNLPIVTSQLNHQSAIGAFALAKRAMLNGVLL
QRLLETHP
>YPTB2763 narP, nitrate/nitrite response regulator protein NarP
MTKSHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNGSDAITEAAKFQ
PDVILLDLNMKGMSGLDTLKALRHNGSDARIIILTVSDARSDVYAMIDAG
ADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHEQVNPFSELT
ERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAAT
IMYLENKKY
>YPTB0614 nhaR, transcriptional activator for cation transport (LysR family)
MRMSHINFNHLYYFWQVCKEGSVVGAAEALFLTPQTITGQIKALEGRLGG
KLFKRRGRGLVPSELGQLVFRYADKMFMLSQEMLDIVNYRKESHLLFDVG
VADALSKRLVSQVLETAVVEHEKIHLRCFESTHEMLLEQLSQHKLDMILS
DCPVDSSQQEGLFSVKLGECSVSFYCRQPVPDLPFPASLQQKRLLIPGRR
SMLGRKLLNWINSKGLKVEVLGEFDDAALMNAFAVYHDAIFVAPTIYAAD
TYANDSEIIEIGRLDNVQEEYYVIFAERMIQHPAVQRVCNKDFSALFNC
>YPTB0479 nusA, N utilization substance protein A
MNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIEVRVSID
RKTGDFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVEDQIESV
TFDRITTQTAKQVIVQKVREAERAMVVEQFRQYLGQIVTGIVKKVSRDSI
ALDLGHNAEAVIGREDMLPRENFRPGDRIRGVLYDVRPEARGAQLFVSRS
RSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE
DKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDLQAKHQA
EAHAAIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLEIDGLDE
DTVEALRDRAKAALTTLALAQEESFGDQKPADDLLNLAGLERSMAFKLAA
RGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNICWFGDNA
>YPTB0936 nusB, transcription termination; L factor
MKPAARRRARECAVQALYSWQLSKNDIADVELQFLSEQDVKDVDIAYFRE
LLSGVAVNAASLDALMAPFLSRQLEELGQVERAVLRIALFELSKRDDVPY
KVAINEAIELAKTFGAEDSHKFVNGVLDKVAPTVRKRK
>YPTB0278 nusG, transcription antitermination protein
MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVV
EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP
APISDKEVDAIMNRLQQVGDKPRPKTLFEPGELVRVSDGPFADFNGVVEE
VDYEKSRLKVSVSIFGRATPVELDFSQVEKG
>YPTB3764 ompR, transcriptional regulatory protein
MQENHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH
LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD
DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAIIAFGKFKLNLGTR
EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS
IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGNKA
>YPTB0120 oxyR, oxidative stress transcriptional regulatory protein
MNIRDLEYLVALAEFRHFRRAADSCHVSQPTLSGQIRKLEDELGIMLLER
TSRKVLFTQAGLLLVEQAKTVLREVKVLKEMASLQGESMSGPLHIGLIPT
VGPYLLPQIIPMLHKTFPKLEMYLHEAQTQNLLAQLDSGKLDCAILALVK
ETEAFIEIPLFDEPMNLAIYADHPWANRERVEMHELAGEKLLMLEDGHCL
RDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPNERQ
RDGVCYLECYKPVPKRTIALVYRPGSPLRGRYEQLAEAIRDHMQERMASS
LEQAI
>YPTB0712 pdhR, transcriptional repressor for pyruvate dehydrogenase complex (GntR family)
MAYNKIRQPKLSDVIEQQLEYLILEGTLRPGEKLLPERELAKQFDVSRPS
LREAIQRLEAKGLLLRRQGGGTFVQTNLWQSFSDPLAELLADHPESQFDL
LETRHALEGIAAYYAALRGTDEDLQRIRECHTVIQQAQDNGDLDAEADAV
MQYQVAVTEAAHNVVLLHLLRCMGPMLEQNVRQNFELLYLRREMLATVSS
HRARIFEAIVAREPEKAREASHRHLAFIEEILLDLSREHSRRERSLRRLQ
QRKE
>YPTB2588 pecT, LysR-family transcriptional regulatory protein
MTNANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLE
QLVGKELFARHGRNKLLTEHGLQLLGYARKILRFNDEACTSLMYSNMEGS
LIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVD
LAITTAKVDSHPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYRE
MAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIEMMSPDLRVL
GETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSESSLIL
DSDYLTGDED
>YPTB0517 phnF, putative transcriptional repressor for phosphonate uptake and biodegradation (GntR family)
MNLSRPPTSYPTRYQHIAAQLEQELRGHYRCGDYLPSEQQLADHYQVNRH
TLRRAVDELVERGWLQRRQGIGILVLMRPYDYPLHANARFSQNLLDQGSD
PTSERLLAVLRPAAEPVAKALSLTEGESVIHLRTLRRVNGVPVCIIDHYL
PDLSWWPVLQRFHSGSLHQFIAQHLQQPLKRSQTRISARRAQAKESALLE
IATHAPLLCVRTLNTRVDSQQVAEYSLSLTRADMIELTMEH
>YPTB0917 phoB, response regulator in two-component regulatory system with PhoR (or CreC), regulates Pi uptake (OmpR family)
MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLV
LLDWMLPGGSGIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPSSHRVMAND
QALDMGPTEFKLLHFFMTHPERVYSREQLLNYVWGTNVYVEDRTVDVHIR
RLRKALETDGHDKMVQTVRGTGYRFSTRY
>YPTB2434 phoP, response regulator protein
MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAII
DLGLPGEDGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVT
KPFHLEEVIARMQALMRRNIGLASQIIELPPFQIDLSRRELCVNQQQIKL
TAFEYTIIETLIRNAGKVVSKDTLMLQLYPDAELRESHTIDVLMGRLRKK
LLAEHQGEVITTIRGQGYRFDVN
>YPTB1332 psaE, putative regulatory protein
MSHCVVLNKLESVLIIGDSRYALSKNEVLLLECLYLRAGDVISHDELLTT
CWPDRVVSPTSLPVAIKHIRDVFRKITRSEVIKTYKNEGYSYQKDSVLII
IDDGSTEKESHSAAYTRKEKPDIPIKLVGLQILSHLNSTFFIAIMMVIII
IFFMVGGNDIVSFIDSDTNSVIITNVTTKMNGPTAGLPKVKNSMIFKDDF
GLVIICDQSECKQQ
>YPTB2270 pspA, phage shock protein A
MGIFSRFADIVNANINTLLDKAEDPQKLVRLMIQEMEDTLVEIRSTSARA
LAEKKQLLRRIDHSESQQQEWQEKAELALRKDKEDLARAALLEKQKVMTL
VETLKREVATVDETLSRMKHEITELENKLTETRARQQALTLRHQAASSSR
DVRRQLDSGKLDEAMARFEQFERRIDHMEAEAETVGVGKQKSLDQQFAEL
RADDEISSQLAALKAKMKSVE
>YPTB2268 pspC, phage shock protein C
MANVLGSKKLYRVPEEGMIKGVCAGLAHYFDIPVRLVRVIMVLSLFFGLF
VFTVAAYIILAFMLEPVSAASVTNDNDVTPRQLLDQLQHELAQGEQQLRQ
VERYVTSDTFGVRSRFRQL
>YPTB2271 pspF, psp operon transcriptional activator
MNEQLDNLLGEANAFVDVLEQVSGLAKLNKPVLVIGERGTGKELIAHRLH
YLSERWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGRFERAD
GGTLFLDELATAPMLVQEKLLRVIEYGHLERVGGSQPLQVDVRLVCATND
NLPALAAAGKFRADLLDRLAFDVVQLPPLRERQQDIMLLAEHFAILMCRE
LGLPLFSGFTATAKEQLLEYRWPGNVRELKNVVERSVYRHSDSSLPLNNI
IINPFASNQKGEIEGVDTPNEGGAVLPALPVDLKHWLHTSEHQMLTRALK
QARFNQRKAAHLLGLTYHQLRGLLKKHTILSGELPQVSDSGE
>YPTB2300 purR, purine nucleotide synthesis repressor
MATIKDVAKHAGVSTTTVSHVINKTRFVAENTKAAVWAAIKELHYSPSAV
ARSLKVNHTKSIGLLATSSEAPYFAEVIEAVENSCYSKGYTLILCNSHNN
LDKQKAYLAMLAQKRVDGLLVMCSEYPDQLLGMLEDYRNIPMVVMDWGTA
RGDFTDSIIDNAFEGGYLAGRYLIERGHRDIGAIPGQLARNTGGGRHQGF
LKALEEANIPVREEWIVQGDFEPESGYKAMHQILTQKHRPTAVFCGGDIM
AMGAICAADELGLRVPQDISVIGYDNVRNARYFSPALTTIHQPKERLGET
AFAMLLDRIVSKREDPQTIEVHPKLVERRSVADGPFRDYRR
>YPTB0658 rapA, ATPase associated with RNA polymerase
MPFTLGQRWISDTESELGLGTVVAIDVRMITLLFPATGENRLYARNDSPI
TRVMFNPSDTITHHEGWQLKVEEVTQENGLITYIGTRLDTEETGVAMREV
LLDSKLTFSKPQDRLFAGQIDRMDRFALRFRARKYQSEQFRLPWSGLRGI
RASLIPHQLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQLLAGRA
ERVLIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQ
MVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHLAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYR
PIADAVTLLLGGERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAAR
QELVTMLMDRHGTSRVLFRNTRNGVKGFPHRVLHQIKLPLPTQYQTAIKV
SGIMGAKKTLDARAKDMLYPEQIYQEFEGENATWWNFDPRVEWLLNYLVA
NRGEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYF
ASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLEDTAQAILVRWYHEGLDAFEHTCPTGRTIYDSSYQEL
ISYLATPSEQEGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQ
ELAQSIAEQDNDINLVSFALNLFDIVGINQEDRSDNLIVLTPSDHMLVPD
FPGLPPDGCTVTFDREQALSREDAQFVSWEHPIIRNGLDLILSGDTGSCA
VSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPVRMLMDRNGT
NLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHTMLQQAEALVEAQAQ
ALIETAKREADDKLSTELARLEALKAVNPNIRDDEIEALEHNRKMVLENL
NQAGWRLDAIRLVVVTHQ
>YPTB1258 rcsB, capsule synthesis two component response regulator component B
MNNLNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDA
NVLITDLSMPGDKYGDGITLIKYIKRHYPDLAIIVLTMNNNPAILSSVLD
LDIDGIVLKQGAPADLPKALAALQKGKKFTPESVAKLLEKISANGYGDKR
LSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKLGVDNDIA
LLNYLSSVTISQVDKEL
>YPTB0033 recG, ATP-dependent DNA helicase
MKGRLLDAVPLSTLSGVGASQAGKLAKIGLETIQDLLLHLPLRYEDRTRL
YRIGDLLPGLSVTVEGEVLRSDISFGRRRMMTCQISDGSGVLTLRFFNFN
AAMKNSLSVGKHVIAYGEAKRGNNGPEIIHPEYRVHGENIGVELQESLTP
VYPTTEGIRQATLRKLIDQALAMLDTCVIAELLPIELSRSLISLPEAIHT
LHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLAVRAGAQSYRALP
LMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSFPMMRLIQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSVGW
LAGKQKGKARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQH
RFGVHQRLTLWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRSDVIQRVKNACLEEGRQAYWVCTLIEESELLE
AQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAIMLAFKQGELQLLVAT
TVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLYKT
PLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVAD
LLRDQAMIPEVQRVARHLHQQYPEHAKALIERWLPERVRYTNA
>YPTB0751 relA, (p)ppGpp synthetase I (GTP pyrophosphokinase)
MVAVRSAHLNPAGEFALDDWIASLGLANPQSSERLAETWRYCEQQTQNHP
DASLLLWRGLEMVEILSTLSMDNDSMRAALLFPLVDANIVDETTLTEQFG
KGITYLVHGVRDMDAIRQLKATHNDSMSSEQVDNVRRMLLAMVEDFRCVV
IKLAERIAHLREVKDAPEDERVLAAKECSNIYAPLANRLGIGQIKWELED
FCFRYLHPDEYKKIAKLLHERRIDREQFIDDFVASLHKAMADEGIKADIY
GRPKHIYSIWRKMQKKSLAFDELFDVRAVRVVVERLQDCYAALGIVHTHF
RHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELG
VAAHWKYKEGAVAAGRSSYEGRIAWLRKLIAWQEEMADSGEMLDEVRSQV
FDDRVYVFTPKGDVIDLPAGSTPLDFAYHIHSDVGHRCIGAKISGRIVPF
TYQLQMGDQIEIITQKQPNPSRDWLNPNLGYITTSRGRSKIHNWFRKQDR
DKNILAGRQMLDDELEHLDISLKEAEKLLVPRYNMNSMDEVLAAIGGGDI
RLNQMVNFLQGKLNKPTAEEADLEALRHLNNKHQPAPRNASKDSGRIVVE
GVGNLMHHIARCCQPIPGDQIIGFITQGRGISIHRADCEQLAELESHAPE
RIVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASR
SDTKKMVATIDMDIEIYNLQVLGRVLAKLNQLPDVIDARRLHGN
>YPTB0263 rfaH, putative regulatory protein
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEAL
FPNYLFAEFDPENIHTTTVSATRGVSHFVRFGTQPAVIPATVIADMQAHA
VDKIIAPEVPKPGDIVKIIDGVFAGLQAIYTEPDGEARSMLLLNMLNSQI
KHSLDNRQFEKQ
>YPTB0174 rffC, putative lipopolysaccharide biosynthesis protein
MIFSDSAPPLNPAELAAFTLVQAKVPTHRLDLIDALSQLDFHLVEGEIDL
SLAVGEKEGIGTENATSEPNMGPYSQRVATEADIPQLRRVAASTFALSRF
RAPWYDAQDSGRFYALWVEKAVLGTFDHQCLLVLDSTDQPVGFVTLRDLQ
DGSARIGLLAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIA
ALRLYIRSGASIESTAYWLCRG
>YPTB0387 rhaR, L-rhamnose operon transcriptional activator
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGL
HVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQW
HKLLPPLGPEQNQGYWRLTTQGMAQARPIIQQLAQESRKTDSWSIQLTEV
LLLQLAIVLKRHRYRAEHAHLLPDGEQLDLIMSALQQSLGAYFDMADFCH
KNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAAR
CGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPAKNEP
>YPTB0386 rhaS, L-rhamnose operon regulatory protein
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVF
NGNPYTLSRGCVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGH
FLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDRVEDIALHESVF
MQLLVKLWQGCQTQAGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALP
LRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVTDIAYLCGFGD
SNHFSTLFKREFSQSPRDLRSQL
>YPTB0165 rhlB, putative DEAD-box helicase
MSKTHLTEQKFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVA
GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQI
HSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT
LSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRA
GESGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLA
RTRTGNGPRRNSAPRRSGAPRNNRKRPG
>YPTB1214 rhlE, putative ATP-dependent RNA helicase rhlE
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTG
KTAGFTLPLLQLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSK
YLKLRSLVVFGGVSINPQMMKLRGGVDILVATPGRLLDLEHQNAVDLSKI
EILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDEIKGLASK
LLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMIGEGNWQQVLV
FNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVC
VDEHKLLRDIERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPG
MGRGSSAGRPQNGGGAAGRGDSRNSRPRSQADGQRRPAGPSSRGRSRNPG
E
>YPTB0167 rho, transcription termination factor
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIF
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGK
IRPPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERG
NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHP
DCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIA
EKRVFPAIDFNRSGTRKEELLTTTDELQKMWILRRILHPMGEIDAMEFLI
SKLATAKTNDQFFDNMRRS
>YPTB2157 rnb, exoribonuclease II
MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQ
MKKVMHGDRIIATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIV
PDHPLLRDAIQCRPVRELTHSFQNGDWVVAEMCRHPLKGDRAFQADLTAF
ITNGEDHFVPWWVTLARHNLEREAPAMVESALNDAELEREDLTALNFVTI
DSASTEDMDDALFVQDNGDGSWLLTIAIADPTAYVVENSELDLTARKRAF
TNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTITEEGTLSNDIRF
SAAWVESKAKLVYDDVSDWLEGNNRWQPQDTAIAEQITLLKRICDARSNW
RQQHALVFKDRPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCA
ALALREHLGFGIYNVHTGFDPALVEQAASVLKANGVDADPQALLTLPGFC
ELRRHLDALPTQFLDSRIRRFQTFAEISTVPGPHFGLGLEAYATWTSPIR
KYGDMVNHRLLKAMITGQQAEKPQEEITVQLAERRRLNRMAERDVGDWLY
ARYLQPQAGTDTRFTAEIIDITRGGLRVRLLDNGAVAFIPAPFIHAVRDE
VVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVIARPVA
>YPTB2890 rnc, ribonuclease III
MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNERLEFLGDSILSF
VIANELYRRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGE
LKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWYHSRLEEISPG
DKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP
VIGTGSSRRKAEQAAAEQALKQLELE
>YPTB3538 rnk, regulator of nucleoside diphosphate kinase
MTKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIP
ADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLG
LHVNDEISWKLPGGDETRITVLELLYQPESAGEYHR
>YPTB0432 rnr, ribonuclease R
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEE
PLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLR
VEGSKDDLYLSAEQMKMAIHGDVVLAQVVGADRKGRREARIVRVLVPKTS
QIVGRYFTDAGTGFVVPDDSRLSFDILIPAEATCGARMGFVVVVELTQRP
TRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQVEKQVADLKE
QVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDR
LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQY
KPLVPHLEELHAMYKVLDQARAERGGIAFETEEAKFIFNAERRIERIEPT
VRNDAHKLIEECMILANIAAARFVEKHEEPALFRVHDRPSDDHIVALRSV
LNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLLRSMKQAVYDP
ENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT
GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTG
IIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVV
YRLGDTVEIRVDAVHMDERKIDFALVSSTRKPRGEGKTARDKAKNNGQRT
LRSNSAGRGSSSGSSRRDGAPTAGGQKRPRRAKKPVNFEPDSAFRPDAAA
AKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKTTSDQ
>YPTB0599 rob, putative transcriptional activator for resistance to antibiotics, organic solvents and heavy metals (AraC/XylS family)
MDQASIIRDLLSWLESHLDQPLALDNVAAKAGYSKWHLQRMFKDVTGNAI
GAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTP
ALYRRAEDWHSSGICPPIRLGTYTLPQPEFITLPEQHLVGITQSYSCTLE
QISTHRAELRLHFWQQYLGDADQLPPVLYGLHHSRPNPEKDDEQEIFYTT
AIEPQHIPCNVPEGQPVILQGGEYVQFSYDGPLDGLQNFILTLYGTILPQ
LALIRRRGYDIERFYPQGRPKDGPPATLKCDYFIPIRR
>YPTB2288 rovA, MarR-family transcriptional regulatory protein
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQI
QLAKAIGIEQPSLVRTLDQLEEKGLITRHTCANDRRAKRIKLTEQSSPII
EQVDGVICSTRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTK
>YPTB3673 rpoA, DNA-directed RNA polymerase alpha chain
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL
TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASINMRIKVQRGR
GYVPASARIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK
LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
>YPTB0283 rpoB, DNA-directed RNA polymerase beta chain
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLE
AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKL
RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR
RRKLPATIILRALNFTTAQILDLFFEKVVFEIRDNKLQMELVPERLRGET
ASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YVDASTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISET
LRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV
GRMKFNRSLLRDEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQV
DYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGMERAVAVDSGVTSVAKRGGTVQYVDASRIVIKVNEDEMHPGEAGIDI
YNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQNM
RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI
TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE
MQLKQAKKDLTEELQILEAGLFARIHAVLVSGGIEAEKLSKLPRERWLEL
GLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIV
KVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP
LGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAKLREFIQKAYD
LGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE
>YPTB0284 rpoC, DNA-directed RNA polymerase beta chain
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE
RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG
MTNLERRQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKNMDLEAECEI
LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKV
RITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAK
AGIIEEAETEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDN
LSVEDVVNRDGVVEQQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVLGRVTAEEVIK
PGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI
QVKNKGSLKLSNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYG
AVMAKGDGAEVQGGETVANWDPHIMPVVTEVSGFIRFADMVDGQTITRQT
DELTGLSSLVVLDSAERTGSGKDLRPALKIVDAKGNDVLIPGTDMPAQYF
LPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPRVADLFEARRP
KEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKIND
KHIEVIVRQMLRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEA
TFTRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGYAYHQDRMRRKAQGEAPVVPQVSADEATANLAELLNAG
FGNNKG
>YPTB3418 rpoD, RNA polymerase sigma factor RpoD
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMIND
MGIQVLEEAPDADDLMLAENTTDTDDDAAEAAAQVLSSVESEIGRTTDPV
RMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQY
DRVEAGESRLSDLITGFVDPNAEEDIAPTATHVGSELSTEEMDDEDEDED
EDDDAEDDNSIDPELARQKFSDLREQYENARMEIKKNGRNHANAAAEILK
LSEVFKQFRLVPKQFDYLVNNMRAMMDRVRTQERIIMKLCVEQCKMPKKN
FVTLFSSNETSDTWFNAAVAMGKPWSEKLKDVSEDVQRSLQKLRQIEEET
GLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
IPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIA
KEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSATHDVLAGL
TAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSEVLRSFLDD
>YPTB2897 rpoE, RNA polymerase sigma E factor
MSEQLTDQMLVERVQKGDQQSFNLLVIRYQHKVASLVSRYVPQGDVPDVV
QESFIKAYRALESFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA
NDAENYENAGALKEISNPENLMLSEELRQIVFKTIESLPEDLRMAITLRE
LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIQR
>YPTB0224 rpoH, RNA polymerase sigma-32 factor
MTKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAA
KQLILSHLRFVAHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN
QDEVELVAKELGVTSKDVREMESRMSAQDMTFDPSPDDEARDGQFMAPVL
YLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHIIRARWLDDEN
KSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA
>YPTB3526 rpoN, RNA polymerase sigma-54 factor.
MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQT
DLHEEIDAKETVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGM
GNDYSDDELPVYQGETTQTLQDYLMWQVDLTPFTETDAAIATSIVDAVDD
TGYLTVPLEDILESMGDENVALDEVEAVLKRIQHFDPIGVAARNLRECLL
VQLSQYAKDTPYLAEARLIVSEYLDLLGNHDFRMMIRLSRLKEDTLKEAI
ALIQSLDPRPGQSINTGESEYVIPDVLVRKEKGIWTVELNADSIPRLKVN
QQYAAMGNSVRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQ
QVEFFEKGAEFMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELK
YFFSSHVNTDSGGEASSTAIRALVKKLVAAENPAKPLSDSKLTTLLCEQG
IMVARRTVAKYRESLSIPPSNQRKQLV
>YPTB0776 rpoS, sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase
MSQSTLKVNELHEDADFDENSTETEIFDEKALVDDEPTESELADDELLAQ
GVTQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVPSRRRMIESN
LRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW
WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI
AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILSDENENGPED
TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT
RERVRQIQVEGLRRLREILQTQGLSIEALFRE
>YPTB0036 rpoZ, DNA-directed RNA polymerase, omega chain
MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEENDKVTVIA
LREIEEGLITNQILDVRERQEQQEQEAAEIQAVTAIAEGRR
>YPTB0291 rsd, regulator of sigma D
MLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKHTPLN
AKTLENFCHNLVDYLSSGHFHIYDRIIKEVEGASSPKMALTAKIHPALKN
NTQTIMAFHDRYTNIEIDDDSCTEYQQALSDIGEALDARFKLEDQLIQWA
AESWQAAQLADADKKSQVN
>YPTB2230 rstA, two-component regulatory system, response regulator protein
MSKIVFVEDDPEVGKLIAAYLGKHDIDVFVEPRGDTAQAVIEQQQPDLVL
LDIMLPGKDGMTLCRDLRPHYDGPIVLLTSLDSDMNHILSLEMGANDYIL
KTTPPAVLLARLRLHLRQHNQRLRQQTPLQAKETISSPPTGYNAIHFGLL
CIDPVNRQVNLDDEEISLSTSDFDLLWELATHAGIIMAREALLKNLRGIS
YDGMDRSIDVAISRLRRKLYDNALDPFRIKTVRNKGYLFAPNAWESKQ
>YPTB1067 sfsB, putative DNA-binding protein
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERL
IAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>YPTB0461 sfsB, putative DNA-binding protein
MILRKSDWHPADIIAALRKKGTTLAALSRKAGLSSSTLANALTRPWPKGE
WLIAECLDIHPSEIWPTRYFDPKTGNLLDRKVRIRPTTTQP
>YPTB0035 spoT, guanosine-3',5'-bisbis(diphosphate)3'-pyrophosph ydrolase
MYLFESLNLLIQRYLPEEQIKRLKQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMRLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLNFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHLKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILAEIEGRLTEAGIPCRVSGREKHLYSIYCKMHLK
EQRFHSIMDIYAFRVIVKEVDTCYRVLGQAHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSLIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEQGESGTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYVVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDESVSLGRRLLNHALGNGRKL
SDISEENIKHELDRMKLATVDDLLAEIGLGNAMSVVVAKNLLGDPSTLGT
SASGTRKLPIKGADGVLITFAKCCRPIPGDPIIAHISPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDQETEQEFIAEIKVDMFNQQGALANLTAAINAA
ESNIQSLNTEEKDGRVYSAFIRLTTRNRVHLANIMRKIRIMPDVVKVSRN
RN
>YPTB2900 srmB, ATP-dependent RNA helicase
MTVTNFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPT
GTGKTAAFLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELA
KYTQLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGEAIREFA
ERILNEPVELEADPSRRERKKIQQWYYRADDIKHKTALLCHLLKQPDVSK
SIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVN
VLVATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAIS
LVEAHDHILLGKIGRYLNEPLKPRVIDELRPTSKAPSEKATGKPSKKVLA
KRKEQKESSKEKVKVKVRHRDAKNVGKRRTPKAKPDTKSAG
>YPTB1610 thuR, putative ThuR, regulatory protein for trehalosemaltose transp...
MSLKKIANELGLSSTTVSRALNGYDDVAAETRERIIDAAKRLGYQPNSLA
RRLKMGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPD
EPGEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALGRSH
LPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGY
VQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITDCNML
GDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGK
QIASMICDLLGGKDPKELQVLWQPEIGEGETDGVNRRG
>YPTB3535 treR, trehalose operon repressor
MQNRLTIKDIARMSGVGKSTVSRVLNNEGSVSPQTRERVEAVIRQHGFTP
SKSARAMRGQSDKVVGIIVSRLDSPSENQAVRTMLPLFYQQGYDPILMES
QFDTTLVSEHLHILQQRHVDGVILFGFSGLTAEMLAPWQEKMVVLAREYR
GFSSVCYDDEGAIYLLMDKLRQAGHRHISYIGVQSSDATTGMRRYQAYLD
YSQQHGLTPMVALGELSYQSGFQLAPQVITPQTSALVCASDTIAMGVSKY
LQQQEREQPPIQVCGIGNTPLLHFLFPDTLTIELGYGRAGVKAAQQLLDQ
LSNSQPIQQIIIPGQLV
>YPTB0122 trmA, TetR-family transcriptional regulatory protein
MGTIMGVRAQQKERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPT
SFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFM
EFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMP
RSFTEAQAEAMVTIVFSAGAEVLDVDIEQRRQLEERLVLQLRMISKGAYY
WYRREQEKLAASRVE
>YPTB0596 trpR, putative transcriptional repressor for tryptophan biosynthesis (TrpR family)
MTDEKQVSDSLNRQTAGNPYSAADPALSAEDNQHWLSFVALLQNAITQDL
HLPLLQLMLTPDERTALGTRVRIIEELMRGELSQRELKSQLGAGIATITR
GSNSLKTAPPQLKSWLEAQLLANKR
>YPTB0043 ttk, TetR-family regulatory protein
MAEKENTKRNRREEILQALAQMLESSDGSQRITTAKLAANVGVSEAALYR
HFPSKTRMFDSLIEFIEDSLMSRINLILQDEKETFNRLRLILLLVLGFAE
RNPGLTRIMTGHALMFEQDRLQGRINQLFERIEMQLRQVLREKKLRDGQG
FIHDEALLATQLLAFCEGMLSRFVRSEFRYCPTQEFDSRWPLIVAQLQ
>YPTB2262 tyrR, transcriptional regulatory protein
MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFSSLDFSI
FSALMMEIRRIDGVTDVRTVSFMPSEREHRSLRALLESMPEPVFSIDLKG
NLELSNPAARALFSLSEEKIRHKTAGSLLGGYNFSRWFEGGDTAPHTERV
LINNQDYLMEITPINLEDENQKKQTVGAVVMLKSTARMGQQLQTLSVNDD
TEFRQIVAASTKMRQVLAQARKLAMLDAPLLLVGDTGTGKDLLARACHLR
SPRGKMPFLGLNCASLPDEVVESELFGYAAGAYPNAIEGKKGFFEQANGG
SVLLDEIGEMSPRMQIKLLRFLNDGTFRRVGEEHEVHVDVRVICATQKNL
VELVQRGEFREDLYYRLNVLTITLPPLRERQTDIMPLTELFVARFSDEQG
VPRPKLSPELASFLTHYGWPGNVRQLKNAIYRALTQLEGAELRPQDIILP
EFEIEATLGDEVLDGSLDDISKRFERSVLTRLYRNYPSTRKLAKRLGVSH
TAIANKLREYGLSSKRPASDENEEE
>YPTB3847 uhpA, two-component system response regulator
MTYRVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQARAGLPGLQAN
ICICDISMPDENGLDLLKGLPSGMGVIMLSMHDSPALVETALERGARGFL
SKRCKPEDLISAVRTVGSGGVYLMPEIAQQLARVAVDPLTRREREIAVLL
AEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVELAKKVLNL
>YPTB2939 ureG, urease accessory protein
MTDKSTARKKITRIGIGGPVGSGKTAIIEVITPILIKRGIKPLIITNDIV
TTEDAKQVKRTLKGILDEEKILGVETGACPHTAVREDPSMNIAAVEEMEE
RFPESDLIMIESGGDNLTLTFSPALADFYIYVIDVAEGEKIPRKNGPGLV
QADILVINKIDLAPYVGASLDVMESDTKVVRGNRPYILTNCKTGQGIEEL
VDMIMRDFLFTHVQPEGEQA
>YPTB1735 uvrY, response regulator protein
MISVLLVDDHELVRAGIRRILDDIKGIKVAGEMQCGEDAVKWCRSHVVDI
VLMDMNMPGIGGLEATRKILRFSPDTKVIMLTIHTENPLPAKVMQAGAGG
YLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMALSQLEPPAETPFSCLS
ERELQIMIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELT
HLAIRHGLFNAETLSNSD
>YPTB0914 yajF, putative sugar kinase/putative transcriptional regulator (NagC/XylR (ROK) family)
MRIGIDLGGTKIEVIALANDGQVLFRKRVGTPRHDYQKTIQAIADLIADA
EHATGEQGSIGVGIPGTLSPFTGKVKNSNSVWLNGRELDKDLSVFLNRPV
RLANDANCLAVSEATDGAGAGKKWVFAAVIGTGCGSGIAIDGGSHAGGNG
IAGEWGHNPLPWQDEEEREYAQEVTCYCGKKGCIETFVSGTGFATDYFRL
SGKPLKGHEIIELVEQGDVIAEQAMNNYERRFAKSLAHVINLFDPDVVVL
GGGMSNVDRLYDTLPALISPWVFGGECATPILKALHGDSSGVRGAAWLWN
TLRP
>YPTB0933 ybaD, conserved hypothetical protein
MHCPFCAAVDTKVIDSRLVSDGSQVRRRRQCLDCNERFTTFEVAELVLPR
VIKSDEVREPFNEEKLRRGMLKALEKRPVSSDDVETAISHIKSQLRATGE
REVPTKMVGNLVMEALKRLDKVAYIRFASVYRSFEDVREFGEEIARLQD
>YPTB0970 ybaO, probable AsnC-family regulatory protein
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRG
RVALLDSEKLGLGLTAFVLIKTQQHNSDWYQEFVAFTKQMPEVLAFYRMA
GEYDYLMQVEVADMKSYDRFYKRMVNGVPGLIDVTSSFAMEKIKYTTVLP
VPE
>YPTB1597 ybtA, transcriptional regulator YbtA
MTESPQTQSEISIHQLVVGKPANDGNIPAQCELLRCSLQEGMDILLWRGH
FARPETLQLHDDLGRINFSCILEGTSRFAIQGLRRHTDWELARNRHYITH
TPDCRGSASYCGRFESITLSFSPETLALWVPDISAVIKNKIDSHCCCQQQ
RCNAETHLTAQALRHALMRMHGGFSHEQKPSTLWLQGQSLVMLSLVLDEH
REDASCLSCHFNPMERQKLLRAKDLLLADLTQAPGVAELARESGLSVLKI
KRGFRVLFNNSVYGLFQAERMQEARRRLANGNTSVMTVAADLGYANASHF
SAAFQKQFGVTPSTFKRVM
>YPTB0553 ydeW, putative transcriptional repressor
MIKEKPAVKEKPAVKEKPLSSNDEYKYPGNSMSEEELLARVAWFYYHDGL
TQGDIGELLGLARLKVSRLLEKGRQSGVIRVQINSRYEGCLELENTLQQH
FGLKHIRILPSLASLSISSRLGIGAAHLLMALIQPQQLLAVGFGETTMCA
LQHLSGFIASQQVRLVTLSGGVGSYMTGIGQLDAACQVSIIPAPLRASNA
HVADTFRQENSVRDVMLAACAADIAVVGIGSVNQQKEATILRSGYISEGE
QLMFSRKGAVGDILGYFIQADGALVPDMQIHQELIGISLADLTTIPTVIG
VAGGVEKADVIVAALRGRYVNALVTDEVTARAIINLL
>YPTB0528 yjgM, putative acetyltransferase
MTTTTPIRLLVRPITARDNLAIANVIREVSAEFGLTADKGYTVSDPNLDH
LYELYSQPRSAYWVIEVDGHIAGGGGVAPLLGGEADLCELQKMYFLPILR
GKGLAKQLALQALAFARQQGFGRCYLETTASLTSAVGLYERLGFEHIGGA
MGNTGHVDCEVTMLKTL
>YPTB2189 ynfL, conserved hypothetical protein
MSIELRHLRYFIAVAEELHFGRAAERLHISQPPLSQQIQILEEQIGARLL
ARNKRNISLTQAGKLFLKESYQILAQVNSATEKAACLHRGESGVLTIGFT
SSAPLINVVSKNLRTFRQIYPQVHIKMQEVSTKQQIEALLDGRLDLGIMR
NTRLPEALQYRLLLREPLVAVVHEDHPLASLPNGSVKFSSLDKQPFVFFS
REVGTALYDEFFTLLTRAGITPYITQEVGEAMTIIGLVSSGLGVSILPAS
FRRVNVDGVKYLSLDEADATTEMWLVNHKHRPMPPPAEALLRLMMADIQA
APYK
>YPTB2500 ypsR, quorum-sensing transcriptional activator YpeR
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNY
PLDWVKKYKKNSYHLIDPVILTAKGKVAPFAWDDNSVINIKSTDSAVFNL
AREYNIVNGYTFVLHDNNNNMATLNVSSGDDDSIFFDESIEVNKEKIQML
LIFIHDKMLGLYNKSHHENNTLNKKENKREIFSPRENEILYWASVGKTYS
EIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLIKPI
>YPTB3259 yspR, Quorum-sensing transcriptional regulator
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSY
PNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDENITVLSELKLSKIFTL
SKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQML
LIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQ
EIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEIIKPILA