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# Bartonella quintana str. Toulouse, Toulouse

>BQ04990 aau3 protein
MRLTKQTNYALRMLMYCADNQGSLSRIPDIAKAYAISEFFLFKILQPLVE
AGFIQTVRGRNGGIKLAKPAAEISVADVVKVTEDNFSMAECFNTAKSNCP
LIDFCGLNTALQKALNAFFDVLSMISLADLQRRSFRNQLKIDNHETIN
>BQ11080 hypothetical protein
MKCKHENQNLYSAYLTDQWAWKKIAQFKDPINAALKKYAKRFPDDVCLKT
IAQELATGRAQLWLILKNKTQFSAFAITKVEITHTGKKRVVLSDLAGEGG
LKLVKSIEKVEEWARTINAEEVHMFGRSGWSKMLAHHGYCRNLIHYRKVL
VT
>BQ00560 Transcriptional regulator
MKDTPTITQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTL
HPPHLAIFDIKMPRMDGMELLRRLRQKSDIPVIFLTSKDDEIDELFGLKM
GADDFITKPFSQRLLIERVKAILRRANARNQPLATGASSTSSLKRGDLVM
DQERHTCTWKDKPVILTVTEFLILQTLAQRPGVVKSRDALMDAAYSDQVY
VDDRTIDSHIKRLRKKFKQVDDDFAMIETLYGVGYRFHEV
>BQ05500 hypothetical protein
MDKSSGAFRTISEVAELLELPQHVLRFWETRFRQIKPMKRGGGRRYYRPV
DVDLLNGIKQLLYEQGYTIKGVQRLLKEKGIAFVTAVGNGDLDAMDVVLE
KKHGEQTAESKSSKPKKSSFGLLSFMRNEGETSVGSVNVYKDKTDKALLQ
EILFELIECKRVLDRAR
>BQ11460 hypothetical protein
MNIDGWRQRLATALEKSGRSKRSISLAAGKGAGYLHSILSEGKEPTIESL
ARICHEINISMNYILYGQGASPEDKEFLDLISKLSPQERQAILTLLRRPS
GEA
>BQ05400 hypothetical protein
MRCPYCQYEDTQVKDSRPVEEGAVIRRRRVCPVCGGRFTTFERVQLRELL
VSKKSGRCEPFDRDKLMRSVEIAVRKRNIDPDYIERAISGIVRGLESLGE
PEIASEKIGHLVMEALKSIDDIAYIRFASVYRDFRNASDFHDVIDELSKG
IANTESCFDE
>BQ09040 hypothetical protein
MARPETESKTIFGKRLRYVRLALGDPSREALAKSFSMTKNSIAFYERGER
EPNLSVLQTYHTLYGVNINWLLTGQGKMFDTEYTKGDFDWNYFIKKIEGL
EEILANSDRSRKINPEKIKNSYEKLQQYLSRQGSSNIFTLKAATSLIDMK
AKMANSYALSLFIDLLIRSRSQKEAIANQ
>BQ13040 Two-component response regulator
MNYYNLLIVENDDDLRPMLVEQLQIHKEFKVFQAKTAEAGIKIAQEENVD
LAILGTELPDLASHKAVKKFRNQGFRAPIIMITNYDTDCDTILDLEEGAN
DYVTKPFRFAVLLARIRAQLRQYEQNEDAVFCIGPYIFKPGQKLLIDQQD
NKIRLTEKEAAILKYLSCNNDKIVNRETLLEQIWGYNENIVTHTLETHIY
RLRQKIEKDPSNAQILITDQNGYRLNI
>BQ07330 NADH-ubiquinone oxidoreductase
MIARIYSPAKTAMQSGRGNTGFWILQYEPIQAKMLEPLMGYTATSDMNNQ
VRIRFNRKEEAIAFARKNAIPYRVEKTHRPIRRAVSYSDNFRSDRQQSWT
H
>BQ06760 ATP-dependent RNA helicase
MIPPLNSFDDLGLSEKVIKAVKSAGYTAPTPIQSGTIPYVLQRKDVLGIA
QTGTGKTASFVLPMLTLLEKGRARARMPRTLILEPTRELAAQVEENFDKY
GINHRLNVALLIGGVSFEHQDRKLERGADVLIATPGRLLDHFERGKLLLM
GVEILVIDEADRMLDMGFIPDIERICKLTPFTRQTLFFSATMAPEITKLT
KQFLHFPVTVEVTKASSTATTITQQLVKSGNKSWDKRAVLRELIHNEGDE
LKNAIIFCNRKRDISELFRSLVRHNFSVGALHGDMDQYSRMSTLADFKDN
KLTLLVASDVAARGLDIPAVSHVFNYDVPTHAEDYIHRIGRTGRANRSGK
AFTIVTKADQKYISAIEEMSNEKIEWLNGDLSTLTTDDQTDDILGKRQSP
KLSKKISQKGRAIHTKKPLKDDKVGYIKTTNNNANPPEQHHHRKNKSYIP
PGFGDDIPAFMLIKMRT
>BQ02090 Transcriptional regulator
MTETKKNPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKG
TNRIGASRLQAIAEIMDVPVSYFFDKGIDSQHVEGFAESDNSFMDFCSSS
EGIQLMRAFTNISDAKVRRKIIDLAKALSEEDLTNKL
>BQ06280 Cold shock protein
MTSKDALKDYSLSEDRISACGEIIEISGVIKWFDGSKGYGFIIPDLPNFP
DILLHVTVMRRDGFQTALEGAKIVCAVEKTERGLKCVQVKSIDCSSAIHP
AEIPARTHVVVTPESGLERAIVKWFNRDKGFGFLSRGQGTEDIFVHMETL
RRFGLAELRSGQVVLVRFGKGKKGLMTAEIYPDIGIPFATH
>BQ09270 Transcription regulator (lysr family)
MALSLDWDKLRVFHAAAEAGSFTHAAQRLHLSQSAISRQVSALEQEVGVF
LFQRHARGLILTEQGEILYRTTHDVLMKLESAHSQLSESCEKPAGNLRVT
STCGMGAGWLVEHMPEFLSLYPDIRIQLLFDDKELDLTMRHADCAVRLQK
PQQPDLIQRKLFTIHMHVYASKNYIANYGKPEKLSELDEHRIISFGESVP
PYLSGLNWLEKAGKGDGSLRPSVLRINNVISIKNALMCDLGIAVLPDYIV
DNDEHLVRLFPDMVDIPSFDTFFCYPYALKNLAKLKAFRDYIFSKARQWS
F
>BQ11490 hypothetical protein
MSTIFEIKQKLSSQAEAKAKPTASQCEAILFGWQALASTDQMPVSTNHAP
SPKDQAVASTDQMPISTNHAPSPKDQAVASTDQMPVSTNHAPSSTNQAVA
STDQMPVSTNHAPSPTDQAVASTNQMPVSTNHAPSPTDQAFASTDQVPVS
TNHAPSPTDQAFASTDQVPVSTNHALSSTDQVFASTDQVPVSTNHALSST
DQVFASTDQVPISTNHALSSTDQAFASTDQKV
>BQ03640 hypothetical protein
MKQRDGFLGGQLLIAMPGMNDNRFIRSVVYVCAHSDAGAMGIILNQLHHI
DFPELLLHLGVISGVQKKHLSEPIKNFPVRYGGPVDPLRGFVLHSDDYTC
KETVLVAEKICFTATIDILKAISCEQGPQHALIALGYAGWKPGQLETEIS
TNGWLISPTSPSFLFESDLSRKYDESLIRMGINPTYLVSEMGHA
>BQ06470 Transcriptional regulator
MIEKFCIFCKKMRHSLSLISRVRLSTTLCWCRIQKLEEDAVIEGRVAVLS
PEKVNAYVTVFVSICTNTYSHEWLKCFSKIVQKFREVVEFYRISGDIDYL
LRVIIPNIEVYDFFYKKLIAKKLIYVTFHLLSRWNRLNAQRNYHLTI
>BQ03980 Two-component response regulator
MKILVIEDDHETGRYLEKAFGESGHSVDVAYDGDTGYALAETENYDIMVV
DRMLLHRDGLSIIAELRAKGNKTPVLILSALGQVNDRVMGLRAGGDDYLT
KPYAFSELLARVEVLQRRKNPKEAETVYCVGNLELDRLAHTVKRGDKNIV
LQPREFRLLEYLMRYAGQVVTRTMLLENVWDYHFDPQTNVIDVHISRLRA
KIEKDFDVPLLHTVRGAGYMLKAPDNKI
>BQ09250 Cold shock protein
MSTGTVKWFNATKGFGFIQPSDGSVDVFVHISAVERSGLSTLNEGQKISY
DVLHDRRSGKPAAGNLIAL
>BQ12150 transcriptional factor regulator
MASQHRTSSNAKGFATSEYIVYPTHGVGQIIAIEDQEVAGHKLKLFVIHF
AKDKMDVKVPIAKAISVGMRKLSAVDSVERALKILHGKARVKRTMWSRRA
QEYDAKINSGDLICIAEVVRDLFRSNLQPEQSYSERQLYTAALDRMAREI
AVINSLSETEAVNLIEMHLSNKPKCEFKTKSDETNADSKAVYAA
>BQ09460 ctrA, Cell cycle transcriptional regulator ctra
MRVLLIEDDKATTQSIELMLKSANFNVYITDLGEEGADLGKLYDYDIILL
DLNLPDMSGYDVLRTLRLAKIKTPVLILSGMNAIEDKVRGFGFGADDYMT
KPFHKDELIARIHAVVRRSKGHAQSIIVTGDLTVNLDAKTVEVAGRPVHL
TSKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKK
LEEVSSSANYIDTVWGRGYVLRDPVEENVRKTA
>BQ03910 feuP, Two-component system regulatory protein
MRILIVEDDRNLNHQLAEAVRSAGYVSDSAFDGQEAYFLGSTESYDAVIL
DIGLPLLDGISVVEKWRKEGHLMPVLMLTARDRWSDKVFGIDAGADDYVV
KPFHLEELMARLRALIRRSAGHATSALCCGAVLLDTKTSRVFVDGQLIKL
TSYEFRLLSYLMHHCGRVVSKTELTEHLYDQDFDKDSNTVEVFVGRLRRK
LGVDVIETIRGMGYRVRIPGDQ
>BQ09310 greA, Transcription elongation factor greA
MEKVPMTTAGFESLKKELRWRQQEERPRIIEAISEARAHGDLSENAEYHA
AKEAQSYNEGRINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEE
KKVYQIVGDQEADVKTGKISISSPIARALIGKQEGDVIEVNAPGGAHNYE
IIKVQYI
>BQ00490 hrcA, Heat-inducible transcription repressor hrcA
MKQKPIDDELKYLDERSRDIFRHIVEAYLNDGEPVGSRNLSRLLRQTLSP
ATIRNVMSDLEHLGLIYAPHVSAGRMPTQSGLRFFVDAFMEAGDLPNEER
ESIEAQVKEAGHAQSVEHFLVQASQILSDLSRGAGLVLASKYEGTLKHIE
FVRLDGQQALAVLVTQQGEVENRIVHLPKGVTHAQLTEATNFLNAHIQGR
TLSEAKEEIARLCSETRAALDHLSHHLVETGLALWGGEDADHKIHLIVRG
RSNLLEDVKAEEDLERLRHLFDDLETRESMAQLLDLTDEGPGVRIFIGSE
NKLFSLSGSSLVVAPYRDSQQRVIGALGVIGPTRLNYARIVPMVNYTAQL
VSQLLR
>BQ06160 lexA, SOS response regulator lexA protein
MLTCKQYELLLFIHNHMKEIGVPPSFDEMKIALELTSKSGIHRLITALEE
RGFIRRLPNRARAVEVVRLPEKITFNLSSARKISPNVIENNRRKISKNSK
NLNNFDIEDKKNVTVPIMGRIAAGVPVSAIQQQTNTLCLPADMISLGEHY
ALEVKDDSMIEAGILDKDTIIVRRQNTATPGEIIIALIDKEEATLKRYRR
NGASIALEAANPHYETRIYRPERIEIQGKLIGLIRKY
>BQ05840 mfd, Transcription repair coupling factor
MPILKKIVIPKNISAHMIFDGVTDGFEAFALAKLSSEIAQGKPLIYVVHD
GTKIAHLQQVLNFIEPNLPVLEFPAWDCLPYDRVSPGIAVTARRLSALAH
IANLRQNPRPAIILTTANAIIQKLPPRELIETQMIYARVGQRTSMGRLIQ
FLESNGFERVTVVRDVGEFAVRGGILDIFSPVDVEPLRLDFFGNTLETIR
VFDSETQRTINKKTEFLLHSMSEVVLTPEVISRFKSNYIRTFGVSQKNNM
LYEALSQGRRFAGMEHWLPFFYEKLDSFFDHCGNLPLVFEHLIEEVLIEH
YRLIEDYYNARKERENDKENSTSYHPIEPNLLYLTPKHVLEIAQQSGQRV
DFTPFNVPKTFGQTVIHANVKLGYNFVKERNAQEKNVFSSVVHHIASLRA
MGKKVLLACWSEGSLNRLVQVLDEHGLKKIDVAKSLQTVRATPHDCISAA
VVMIEHGFETEDFVVIAEQDILGDRFIRSPRRRKHNTNFISEIAALNSGD
IVVHIDHGIGQFVGLKTITATGILRDCLEIKYAGGDRLFLPIENIELLSR
YGSEGTDVTLDKLGGVAWQARKTRLKKHLLEMAGQLIHIAAERATRSAPA
FVPPIGPFDEFVACFPYEETEDQKDAIDAVLEDLASGKPMDRLICGDVGF
GKTEVAIRSAFVAALNGYQVAVVVPTTLLSRQHYKTFLSRFQGLPVKIAH
ASRLVKTKEFTQVKKGVSDGTIDIVVGTHALLSGAVNFLRLGLLIIDEEQ
HFGVKHKERLKELKSDIHVLTLSATPIPRTLGLALSGVRELSLITTPPID
RMAVRTFIAPFDTLVIRETLLREYYRGGQSFYVCPRISDLAFVEEYLKTH
VPELKFVVAHGQMPAGQLDNIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEIFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLTAAADRRLKV
LQSLNTLGSGFQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEA
VAELKDGKQNEDKQWSPQISLGTTVMIPESFVPDLSLRMGLYRRLTELDD
LEQIDEFAAELIDRFGPLPLEVQHLLKVFYIKTLCRKAHVEKLDTGPKGI
IVQFRNNYFANSVALVQWIGKQGSMAKIRPNQSIIFIRDWTTLDERLAGV
VTIMIQLVEMAEQRSV
>BQ02050 nusA, N utilization substance protein A
MATSANRLEILQIADAVAREKSIDREIVISAMADAIQKAARSRYGQETNI
HAEINSKTGEIKLQRLLKIVDIVEDYTTEITLSDALKRQADAKIGDFFAD
LLPPMDFGRIAAQSAKQVIVQKVHDAERDQQYEEFKNKIGEIISGTVKRV
EYGNVIVDLGRGEAIVRRDELIPRESFHYGDRIRAFVSDVHREPRGPQIF
LSRTHPQFMVKLFTMEVPEIYDGIIEIKSVARDPGSRAKIAVVSRDGSID
PVGACVGMRGSRVQAVVAELQGEKIDIIPWSPDAATFIVNALQPAEVSKV
VLDEDVERIEVIVPDDQLSLAIGRRGQNVRLASQLTGWNIDILTEQEESE
NRQKEFTERSKLFMESLDVDEMIGQVMASEGFSSIEEIAYIDLEEIASID
GFDHETAAEIQSRAREYLERKEKELDEKRKKLGVSDELRMLPGITNAMLV
AIGEDGVKTIEDFAGYAVDDLAGWKERKEGQTQNFSGILTPFDITRFDAE
AMVLAARVQAGWIDKADLITENPAKIENSAENEKIDNLNEDTL
>BQ05440 nusB, N utilization substance protein B
MADIKGKYSPRLANKRGAARLAAVQALYQMDIVGSGVMETAAEYEAYHLE
KNIDGNQYLDADFQWFLAIITGVVKDQKQLDPMLHQQLSAEWSLSRLDSI
LRAILRAGLWELINRQDVPIAVVMNEYVDIAKAFFEGDEPKLVNAVLDSM
AKKIRL
>BQ07180 nusG, Transcription antitermination protein
MAARWYIVQAYSNFEKKIAEAIDKEAKQKGLDHLFEKIFVPTERVVEVRR
GRKVDTERKFFPGYVLVCAELTDEVYHLIKNTPKVTGFLGSDSRPIPISD
REAEQILKQVQEGVESPKSSVLFEVGEQVRVADGPFVSFNGIVQEVEEER
SRLKVEVLIFGRPTPVDLEFGQVEKL
>BQ03390 ompR, Transcriptional regulator ompR
MTDHIQVLSDNAPHLLVIDDDTRIRNLLFQFLLKNGFRVSVSANADEARR
QLANLDFDLLIIDVMMPGENGIDLTHSLRQTKDVPILMLTALSEIDSRIN
GLEAGADDYLAKPFDPRELLLRINAILRRGFPLNQPKIEQIVFGPYIFSI
SRRELKKGGEVIKLTDKEQKMMVIFAENTGDIIPRHKFATDDSDIGERAI
DVQINRLRRKIEKNPATPIWLQTVRGIGYKLSVE
>BQ13530 parB, Chromosome partitioning protein, parb
MNDDQSKKRLGRGLAALIGDISLNNNLAHSSSADKLPEFSTVSSVSEQFV
PLESISCNPNNPRRHFTDSELDNLAQSIRQHGVVQPVVVRPSRDHPHRFE
LIAGERRLRAAQRANLNQLPVIIRDVDDKTALELAIIENIQRSDLNPIEE
GMAYEALLSEHGYTQADLAQVIGKSRSHVANTLRLLKLPPKVQQFLTNGQ
LSAGHARCLVTANNPQDLAERIICEGLSVRQTEILAYEQANTKVKKRTSV
EKDAEIKSLEKLLADVIGMKVIIRHGKKGGDLKIHYSSLEQLDYICRCLQ
S
>BQ07630 recG, ATP-dependent DNA helicase recG
MLPDLIRPLFTSVRALPGTSPKICALLAKVLNINPAQREPTVIDLLQLMP
QSVIDRRMQPSIAFAQEGITVTLEIIVDQHHPPPIERNRLPYRVSAHDQT
GKINLVFFHAQRPWLKKQLPEGKKVIVSGKVERFNGQLSMIHPDHIAPSE
QSNQMPLIEPVYPSTAGLSAKTLRRTIQNALEYIPLLPEWIEESVKKQQN
FSSFSVALHRIHTPINPDDLSLKSAARKRLAYDELLACQLALGLVRLKTK
SLSGASRPPKGTYTKKLLKALPFQLTNGQKKAIQDIANDLASPEPMLRLL
QGDVGAGKTVVALMASAQIAENSGQSALMAPTEVLARQHFATIAPLAEKI
GLQTVLLTGREKGKLRANILKDTLSGQASIIIGTHALIQNNVAYKNLALT
IIDEQHRFGVHQRLALTAKGNKPDMLVMTATPIPRTLVLTAFGDMDISQI
TEKPTGRQPITTAILPLQRIHELLERIAIALEKGEKLYWICPLVEESTTL
ELTSIENRFAILREQFGERVGVIHGKMSTDEKEAAMTSFKCGNICILVAT
TVIEVGVDIPDASIIVIEHAEHFGLSQLHQLRGRVGRGEKKSSCILLYKN
PLTKTAAKRLNIIRNTEDGFKIAEEDWRLRGEGELLGTRQSGMPEFHIAN
LAVHSDLLSIARRDARLFLQHDANFSSKRGKALRLLLDLFRRDDAIRLLQ
AG
>BQ13580 rho, Transcription termination factor rho
MQGMKLQELKSKNPVELVSFAETLEVENASLMRKQELMFAILKKLASQDI
EIIGEGVVEVLQDGFGFLRSADANYLPGPDDIYLSPAQIQSFSLKTGDTV
EGPIRSPKEGERYFALLKINTINFEDPEKIRYKIHFDNLIPLYSNERFQM
EIQDPTEKDMSSRVIDLISPLGKGQRGLIVAPPRTGKTVLLQNIAHSITT
NHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAMRHVQVAEMVI
EKAKRLVEYGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDR
KVADKRIFPAMDILKSGTRKEELLVARQDLHKIFVLRRILAPMNVTDAIE
FLIDKLKQTKNNSEFFDSMNT
>BQ04280 rnc, Ribonuclease III
MNCPIIDQLERLTEHHFKDEERLKKALTHSSVQDSEQGNYERLEFLGDRV
LGLLIAEMLYKLFPQASEGELSVRLNGLVNAQTCADIALEMGLPDMIHVG
FEMRNLKGRRLTNMHADVIEALIAVMYLDGGLKSVRPFIRRYWQSRAKQM
DAGRRDAKTELQEWAHVQGGVQPHYRVVKRSGPDHDPVFMVEVSILGFAP
EIGQGNSKRCAERMAAEKVLRREGIWKTMGKNDHE
>BQ07990 rpoA, DNA-directed RNA polymerase alpha chain
MIQKNWQELIKPNKVEFCTHDNPNISSVIVEPLERGFGLTLGNALRRVLL
SSLRGAAITAVQIDGVLHEFSSIPGVREDVTDIILNIKEIALRMQEEGPK
RVVVCKEGPGVVRAGDINTVGDMEILNPEHVICTLDEGAEIRMEFIVNTG
KGYIPSDRNCVDDGRIGLIPVDSLYSPIRKVSYKVENTREGQVLDYDKLT
LTIETNGAVNGEDAVAFAARILQDQLSLFVNFEEPQKEIVDESDSELTFN
PALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTESEMLRTPNFGRKSL
NEIKEVLACMGLHLGMEIPTWPPENIDDLAKRYEDQY
>BQ07130 rpoB, DNA-directed RNA polymerase beta chain
MAQTLAMTSQFNGRKRVRKFFGKIPEVTEMPNLIEVQKASYDQFLMIEEP
KGGRPDEGLQAVFKSVFPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDL
TYAAPLKVILRLIVFDVDEDTGSKDIKDIKEQGVYMGDMPLMTTNGTFIV
NGTERVIVSQMHRSPGVFFDHDKGKSHSSGKFLFAARVIPYRGSWLDIEF
DAKDIIYARIDRRRKIPITSLLMALGMDASDILSTFYNKVTYERDGDGWR
IPYSVGRFKGVKLISDLVDADSGEVVAEAGKKLTVRAAKALAEKGLKAVK
ITEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKALKILFDVSADQINIL
DIDHMNIGAYIRNTLKVDKNESQQDALFDIYRVMRPGEPPTMDTAAAMFH
SLFFDPERYDLSAVGRVKMNLRMDLDCPDTVRILRQEDILAVVKMLVELR
DGRGEIDDIDNLGNRRVRSVGELMENQYRIGLLRMERAIKERMSSVEIDT
VMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG
GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGF
IESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRFTDEFVVC
RHAGEVLMAPRDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ
RQAVPLVRAEAPFVGTGMESIVARDSGAAVSAKRGGIVDQVDATRIVIRA
TEDLDPSKSGVDIYRLQKFQRSNQSTCINQRPLVHVGDRVEKGNIIADGP
STDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSIHIEEFE
VAARDTKLGPEEITRDIPNVAEESLRNLDEAGIIYIGAEVQPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRH
GVEKDERAMAIEREEIERLAKDRDDEQSILDRNVYARLTDMLTGKIAVEG
PKGFSKGKKLDNTIMGHYPRSQWWQFTVEDEKLQSEIEALRRQYDESKEA
LQRRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKG
VVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAGM
GKKIGDLVDLYQETGDIFPLRQRIENLMPDNDHNEPVRQYDNESLYKLAL
QMRKGVSIATPVFDGAHEADINMMLEDADLDSSGQVVLYDGRTGEPFDRP
VTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFN
VLVKEMRSLALNVELDDARELIAQRVLSDTTEQ
>BQ07120 rpoC, DNA-directed RNA polymerase beta prime chain
MNHEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTF
KPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRR
ERMGHIELAAPVAHIWFLKSLPGRISTLLDLTLKDIERVLYFENYIVTES
GLTSLKLHQLLSEEEYMLAIDEFGEDQFTAMIGAEAIYELLAGMELEKIA
NDLRVELSETTSELKQKKLIKRLKIVENFLESGNRPEWMIMKTIPVIPPD
LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVD
YSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAK
KLVEKEHPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQ
LHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGAP
IIVPSQDMVLGLYYLSIVSEKEPGEGMAFSDMGELHHALENKVVTLHTKI
KGRVKNIDKDGKEVAKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKMIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSK
LRLVAETEALAKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRVADEMMKR
IQAVEFDPKTGRQRPMNSIYMMSHSGARGSANQMKQLAGMRGLMAKPSGE
IIETPIISNFKEGLTVNEYFNSTHGARKGLADTALKTANSGYLTRRLVDV
AQDAIISAVDCGTAKGLTMQPIVDAGQIVASLGQRILGRTALVDILHPVS
GEVIVEGGVMIEETDVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSHLEASY
EGTVEIRNRNVVHNSEGHLVVMGRNMVILIKDGSGKERVVHRISYGAHIF
VDDGDVVKCGQRIAEWDPYTRPILTEVEGYVGFEDMIDGLSVTETADEST
GITKRLVIDWRANPRGADLKPAIIIHADKKGEDIAKYKGGEARYMMSVDT
ILSVEPGAHVKAGDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAI
IAEVSGTIQFGRGYKNKRRIIIEPNDETLEPVEYLIPKGKLFHFQEGDQI
EKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIE
VIVRQMLQKVEITESGDSGYIPGDHVDRIELDEINDNLIAEGKRPASGNP
ILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENVIVG
RLIPAGTGGTIAQIRRIAAVRDNLIVDERRKSSDSQVAKIMLTNMTTGAT
AE
>BQ09160 rpoD, RNA polymerase sigma factor rpod
MATKVKQKDNTEVKGQASVDSPLLDFSDDAIKKMVKLAKKNGYVTMDELN
AVLPPDEVTSEQIEDTLAMFSEMGINVVDDEDEGESEHYEEEVTVEGGDL
VEVTRNAIATTTKREVTDRTDDPVRMYLREMGAVELLSREGEIAIAKRIE
AGRETMIAGLCESPLTFQALIIWREELKEQRILLREIIDLEMTYAGPEAK
QAPVIERSEIGKIKEEKSFSGTRDMEENITRDIGVEDDEEEDDDVNLSLA
AMENELCPQVMETLDFIAEAYIKLRKLQDQHVESSLAERKEGTLSLSQKK
KYIQLKSELIQAVKSLSLNQNRIEALVEQLYDINKRLIHNEGKLKRIANN
YGVSHEEFLKEYQGRELDADWINYIATLSGRGWKEFSMREVKEIQSLRSE
IQNLAQETAISIGEFRRIVTQVQKGERESTIAKKEMVEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI
ADQARTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELSSKLSMPLEK
VRKVLKIAKEPISLETPVGDEDDSHLGDFIEDRNALLPIDAAIQANLRDT
TTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAK
ALRKLKHPSRSRKLRSFLDS
>BQ02820 rpoH1, RNA polymerase sigma-32 factor
MAHINLLSVTTGDGGLNRYLEEVRRFPILEPKEEYMLAQRYRQHNDLKAA
HRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRFEPERGLR
LATYAIWWIKASIQEYVLRSWSLVKIGTTANQKRLFFNLRKLKSRLQVLD
KGDLNAEQVKEIATQLNVTEDEVISMNRRLCGDTSLNAPLRTQEGENSEW
QDWLVDDSNNQEQTLIEQSELENRRSMLTYAMSNLNEREKRIFKARRLSD
KPLTLEELSSEFNISRERVRQIEMRAFEKVQNSIKASALSQSQM
>BQ12120 rpoH2, RNA polymerase sigma-32 factor
MGNLSNAVYKSSKNYSDADKSLGRNMMRSAMQAPYLERQKEHDLALRWKD
KRDDDAMHQIAAAHMRLVIAIANRFKRFKMPLGDLVQEGYVGLLEAAARF
EPDREVRFSTYATWWIRASIQDYILRNWSIVRGGTSSSQKALFFNLRRLR
AKLVQDDNALTKQDIFRTIAERLGVSVRDVETMDFRFSSSDNSLSVSVSE
NSDNPIAKMDALVDDSPLPDALIEQVIDSQRRTQWLHDALQSLNERELEI
IRFRRLNEEGATLEVLGEKLGISKERVRQIEARALQKLRSALLMVNPADA
YDL
>BQ04220 rpoZ, DNA-directed RNA polymerase omega subunit
MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQVTVDRDNDKNPVVAL
REIAEETLSPADLKEDLIHSLQKHVEVDEPEMANEFLSHSGEAETVFATT
SEEESCSFDCMSEEDLLAGIEGLVIPEKSDDY
>BQ10960 sigH, RNA polymerase sigma factor, ecr subfamily
MMEGVKDFKQELLLVLPALRAFAISLSSKHDKAEDLVQDTLMKAWAKQDS
FEMGSNLKAWLFTILRNEFYSQMRKRGREVQDSDGVFIESVAIHPAQYGS
LDLQDFKKALNMLSADQREAIILIGASGFSYEDAAAICGCAIGTIKSRVS
RARNRLQELLKVDR
>BQ04230 spoT, GTP pyrophosphokinase
MMRQCELVGRVQRYKSDVDEALLNKAYDYAMRKHGHQKRASGDLYFSHPL
EVAAILTDMRLDEATIAVALLHDTIEDTSATRAEIDQLFGSEIGKLVEGL
TKLNKLDLVSKKAVQAENLRKLLIAISDDVRVLLVKLADRLHNMRTLGVM
RDDKRRRIAEETMDIYAPLAGRMGMQDMREELEDLSFFYLNPEGYRTITN
RLSELLKRNRDLLSRIENELTKLFFEHGIKADVKSRQKKSYSVFRKMESK
ALSFEQLSDIFGFRVIVETMNDCYRALGVIHTTWPMVPGRFKDYISIPKQ
NDYRSIHTTIVGPSRQRVELQIRTAAMDEIAEYGVAAHSIYKDHGSDYST
SKLSNETNAYAWLRQTIQSLSDGDNPEEFLEHTKLELFQDQVFCFTPKGR
LIAFPKGATPIDFAYAVHTDIGDSCVGVKINGRIMPLMTKLKNGDEVDII
RSQAQIPPAAWEFLVVTGKARSAIRRATRAAVHKQYSGLGYRILERSFEY
MGKQFSKDVLKQVLPRLARKDVEDVLAAVGRGELPSSDVIKAVYPDYQDH
RVVQKPSFKPGEEGWFNIENAQGMIFKVPENERGAASEEKHQSKALPIRG
TRGDIPVRFSPEGAVPGDRIVGIMQPGAGIVIYPIQSSALMAYDDQPERW
IDVRWDIDAQMSERFPTRINILVVNSPGSLAEITQVISANDANIQNLSFI
RTAPDFTEIMIDLEVWDLKHLNRIFSQLKEAGSVSAVRRVHG
>BQ06430 vacB, Exoribonuclease, VacB and RNase II family
MAKGGKKTKYFQSFNMKKLPDKAEILSFINENPDRSSKYEIAKAFNLKSD
SRIWLRGILRDLKDQSLISKQRKKAINKGKLPTTTVVKISKHDKDGSFIA
QPLEWENDSKPNIKILPFHRIKGLSVSVGDHILVKIFRNKAPQSDSYTGK
IIRKVGMSPKSTFGVVRKLENGQWYLDPVERKTNELIIDTSSEINVESGD
FVEVEIKKNIGYGLKSAQIKNVLGRIDSEKALSMIALLSKGIPYIFPEDV
LEEAKNAKPASIFNREDWRQMPFITIDPPDAKDHDDAVYATKDKDPANSG
GWIIVVAIADVSYYVKTGSALDQEALKRGNSVYFPDYVVPMLPERISNNL
CSLREGKERPALAVRMIFDANGNKRKHSFHRVMMRVRAKLSYQEVQLAID
GNINEKVAPFFKSVLQPLWEAYGCLKTARNRRKPLELEITEKKIILDQKG
CIEDVVIQTQLEAHLLIEEFMIQANIAASETLKEHHQPLIYRIHDKPSLA
KQEILRSFLQSLGISLSRGSELTSAHLNSILAKVAHTQQQELVNQVILRS
QSQAEYNPQNIGHFGLNLHNYTHFTSPIRRYADLIIHRALIKVLRLGNDQ
LTDSQEQNLAEIATQISLYERRAMMAERETIDRLVAHYLTNKIGRTFTGR
VSGVTKAGLFISLEKLNTDGFVPISTLKNDYYHFDEAQHILIGKRNHKGY
QLSDLVEVKLIKVQPFAGALCFELLTKPRPITFSSASYYKNKFIEKKTKA
SFYERNKH