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# Prochlorococcus marinus str. MIT 9313, MIT9313

>PMT2197 Bacterial regulatory proteins, ArsR family
MELLAEYFKVFSEPNRLAVLEALRSGPLNVTAVVEKTDLSQALVSKHLKL
LTIAGVVHRRPEGSLVYYEVMDKAVFKLISQAQKLIMTARRQQLDELSSI
I
>PMT0741 probable ribonuclease II
MTATALTPSLKQGDLVGFVLKGQPQIGLLTSLKGSRAILRVAGTRREQQL
ASRELSILKQNHNMLEMETSLPTISEVRKLSLNSRDLIAGWRLLEGERRK
SKTSPTALKITELAGLLLNNDDPIHLAALWFWLNSDQPLFRVRRDHMVEA
RQLIDLRRIRQLRRKQQSRAQQRLDALALLIADSPLSKDQWQDLPSDLQF
TINRLIELADGPEDAFLADEQALQLIKDLKLGRSLSDLRYWLIKKGWRDP
HDLTTLKGSIWTKSFEGSVQAQADQLLNKFEQLSFGGDDNRLDLSDLRTY
TLDDHQTQEIDDAISLQCVDQDNWIWIHIADPARLIPVDSPLDLEARARA
TSLYLADGLRTMLPLSVAVEVLSLRAGRRCAALSVAVVLDESGCIAGTRV
CRTWIRPCYRLTYEDGDELIELAPPGDEDLSTLASLLTTRQLWRERQGAL
LLEQSEGRFKVKDDQPELHIVESSPARRLVSEAMILMGTVIAEFGKRQNI
ALPYRSQPPTQLPSATELSQLIEGPVRHAAIKRCLSRGVLGTRPMAHFSL
GLSAYVQASSPIRRYADLLAHRQVVAHLGGSVPLSEHALMEQLDVLEDPL
RQAQQIQREDQRHWQKVWFLKHRHEQWPALFLRWLKPQDQIALVHVECLA
MDLACKIHGLIDPSPGLALIMRVLVIDPLTDQIELVAK
>PMT1097 two-component response regulator
MTSIPRNLHSNEDTQVSSSGSLQMQTTPKQPSRVLVVEPHQTLRTVLVHR
LRQDGHLTAAVASAVEALDVCRDQSPDLLVSAELLERSSAMRLSHQLRCP
VIVLTARTGTEPMVGLLNEGADDVLRKPFGLEELAARCRTLLKRGHSGLQ
ERVTVGPLEVHLLLRQVTLRDKPVELSPREFALLCALLMPPGIVRSRQEL
LRMAWPPFSGGPRSVDTQILTLRRKLEQAGLGEGGGITTMRQQGYRFSLD
TLPDSES
>PMT2200 possible transcriptional regulator protein
MESTTPSHQCMMRMAPYLIGRPRRGVVGGSRYACKLRESIRQAANDPERK
PVLISGEPGLEKDNIARLVHFGSADRRLLLMRFDASNIRGQGVELFGREG
SHELSLLDCLGNGNLLIDCIDLAEPQLQARLIALATEGHPAFSGRILLTA
ESSLKELEGIATQIRVPPLRVRRSDLGDWLRYSLRQRSPSLGWSRPPELP
EAIVRRLQSHDFPNNIRELDSVVERALQQARSQAAAEQASAAITMVLPAA
LPEDVFWVNSREPNLRFEIWRWKPQLRQLMRSPQLWNGLLFGLVSWVFVL
VNLWLWFGPQDRAHNSMLKFFWAWWWPLILLTYPLVGRLWCAVCPFMVWG
EIAQNSKKALAKLISTLGLPTGWLQPRLWPHGDHDSWGAPVLAIGFAAIL
IWEEVWNLEDTARLSSYLLLLITSGAVLCSLVFEKRFWCRYLCPVGGMNG
LFAKLSILELRAQSGTCSGSCTSYACFKGGPAEGEGMASEGCPLGTHPAH
LSDNRNCVLCLTCAQACPHHSVQLRLRPPAADLQRSMHGPKGEKGLILVL
AGGITLHHWQRLLGWLPLAPESLQEGPLFARLVFAALALSLPAAAGLWVE
RRWLYTALPLLWSVLLARHLPIGMAEAGTVLPIGWPQWSANPKVIGFCQS
LAIAVGWLGCVVLLRRLISRQRQPWLTASGALLVLALASRWVVHI
>PMT1623 conserved hypothetical protein
MRPSPPRCVGRRHLKVEVVRHCLLIGNSRWHWAEYQADEWQFCHSVPNPL
KLQTLEAPLLAWAAVGPIPAGVALDPNRRLGLGDVPLTRMPVWLGIDRAL
AAWGALRRAHTSGMSSSGLLVADAGTVLSLTRVTAAGDFAGGQLVPGLRL
QLRAMEQGTQGLIDPGIGSVSAEPFPFATAEAMRRGSLQALLGTLLEAQR
EAALPLWLCGGDASVLQEALSQRGLDVVHHPNLVLEGMVDVHDRISRAPS
L
>PMT0037 SWI/SNF family helicase_2
MKFTPKSSSSCYLGLTAAGLVKVTFPFDAVTQAQLRKVRPRGIWRGTRQG
WEFPLVAAQHLQRQFGSRFLVQDDLAQWLSWFEQPLPPMPPHRDLVSYAD
LEVVLTDGRRPLPHQCSGARWLLARRGAVLADEMGLGKTLTSLLAARAMV
RCADVRVMVVAPVGLHDHWRIEAASLDLPVCIHSWARLPRELPAAGTLLL
VDEAHFGQSIKSRRTQALLRLARHPRLRAIWLLTGTPMKNGRPDQLYPLL
AAIDHPLARDQRKFEERFCQGYWRDQGGQRRWLSRGASDLDALGKLTRPL
VLHRRKQTLLGLPPKRRQEHRVVLTESESRGFDHRLALVTDNYRHRVQQG
LVRSDAESLAVLTALRQIAAEFKLPAVETVVAALLAEGQAVVLFSSFVGP
LLLLQQRLGGELLTGRQRPGQRQEAVNRFQSGMSSLLLATYAVGGLGYTL
HRARHVVLLERHWTPGDVDQAEDRCHRLGMDGGLTSHWFQLGFADQLVDS
LIASKAERIEVLLGSRRVGLKRQPLPVMLRCCMQESLRTVSS
>PMT0733 conserved hypothetical protein
MMNAKLKRRNKQIEEHLQLVRPIALHYAFRTGQDKEDLTQVGMLGLIRAA
HSFKPVNQYHFPPLQNRIYVVPSFTTSGIV
>PMT2043 two-component response regulator
MSETLPQNVEAAPSPRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGDDG
WQKAQEMLPDLVISDVMMPRCDGYGLLKRMREDERLGGTPVIFLTAKGMT
ADRTEGYLAGVDDYIPKPFDPEELVARVRNVVRRQDRLLREAARFADTDV
GQMARQITEIRTMLAHGDGSSSKDVALHNFTPREASVLQLVAEGLMNKEI
ARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENQLVT
>PMT0970 possible Herpesvirus VP23 like capsid protein
MRIKIHRSIHRIFEGTPELLCLRKVSKQTLLSCDLVDDIEPLLAWIAGFA
VDLIFSNKRPDPILLRLGATFIVLALSSHVSPSDVCKASLMQHALS
>PMT2217 Putative type II alternative RNA polymerase sigma factor
MKSSPQQTKTSRVRRSGSTDPVRLYLQDIGRVELLTNEEEVTLARLVQRR
EALLKQERKLASNQEAIKELQRLEELQQREANHSCHWPTKQEWAMAAGLT
LAELQEKIETGYKTWGALTGLDPLELKRSLRAGRRAKDQMIQANLRLVVA
VAKKYQQRGIELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGI
TRAIATQSRTIRLPMHITEKLNRIKRVQQEIASSQGRLASIADLAKALGL
SEETVRLTLMRVPRSISLETRIGQEQDTQLGDLLEDSNATPEEKLTRNQL
HNDLEILLDELSNREATVIRRRFGLEDDTPQTLTQIGEAMHLSRERVRQI
ETHALLKLRQPQRRCKVRDYIQNLDS
>PMT0118 possible transcriptional regulator
MRFHIQQESDIPASTQLYNQICFAIAARHYPPGHRLPSTRQLAMQTGLHR
NTISKVYRQLETDGVVEAMAGSGIYVRDQQKPREIKTPPHFRNRGTPDLD
QEVRKCVDGLLNAGCTLQQTREMLTREIDWRLRCGARVLVSTPREDIGAS
MLIAEELEPHLDVPVEVVPMEELESILESSSNGTVVTSRYFLQPLEELAK
RHGVRAVAVDLNDFRQELAMLKELRPGSCVGLVSISPGILRAAEVILHSM
RGNELLLMTATPDVGSRLLALLRAASHVLCDRPSLPLVEQSLRQNRSQLI
RMPQLHCADSYLSTDTIDQLRKEIGLLAT
>PMT0775 Transcriptional-repair coupling factor
MPLSSLVRQLQKSTLTGELVDRSNRNDRLLMRGAGRVGRALIASAIARKQ
NRPLVVIVPTLEEANRWSSLLAMMGWSHNHLYPTSEGSPYEPFDPTTEIV
WGQLQVLSELLGESSRSWDRAIVATERALQPHLPPVDALASQCEILCRGE
HIDLESLANTLSKLGYDRVTTVDQEATWSRRGDIVDIFPVSSELPVRLEL
FGDELDKLKEFDPISQRSLDEVNELCLTPSGFSPLIAHQLRESMPDGLDR
LVSEKTLDQLLEGSTPDGIRRLMGIAWNKPASLLDYIPANSFIAIDEKRH
GSAHGKLWLEHAEEHHIDVGQSMGLSTDEQKKYWPPLLHRSIKESYATTD
RFAGIDLAELHEDDGYANSFDLASRPIPANPNQFGRLGEQIKNYQKEHHP
VWLLSAQPSRAVALLEEHDCITRFVPNAKDHPAIERLLEQNTPVALKTTG
SVDLEGLILPAWRVVLMTDREFFGQKTLGSTGYVRRRRRAASRTVDPNKM
CSGDFVVHRNHGIGRFLKLEKLAISGEVRDYLVIEYLDGTLSVAADQLGS
LGRYRSTSESPPKLNRMGGTTWQKVKERTRKLVRKVAMDLVKLYAERLQA
PGYAFPPDGPWQIELEESFPYEPTPDQVKAVVDVKRDMEAAQPMDRLVCG
DVGFGKTEVAIRAIFKAITSGRQIAMLAPTTVLAQQHWRTLSDRFAPYPI
KVALLNRFRTSSERKSILNGLKEGTIDAVVGTHQLLSKNTTFQKLGLLVV
DEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVREMSLITT
PPPLRRPIKTHLAAFDEEAVRSSIRQELDRGGQVFYVVPRVEGIEDVARQ
LQQMLPDLKLLVAHGQMAEGELESSMVAFNAGEADLMLCTTIVESGLDIP
RVNTILIEDAHKFGLAQLYQLRGRVGRSGVQAHAWLFYPGDASLSDTARQ
RLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEM
LQESLAEIQGQGIPSVDDTQIDLPVTAFVPAEWIVDGDEKIAAYRAAANC
ASHESLIELAASWTDRYGAIPGPVQSLLQLMELKLLARRCGISRIKPEKP
NIAMETPMEEPAFRLLRQGLPQHLHGRLIYQTGSGNKAKVLARGLSVLPM
EKQLEQLMEWLRLMATQIPCEDGLTAIQQKQQAIERDEAVITP
>PMT0635 putative SOS mutagenesis protein UmuD
MTSDVAMEFSEPLLHLRSERKQQILPLASEHVAAGFPSPAEDYIEIGIDL
NEQLIRHPASTFFLRVSGHSMTGVGIHNGDLLVVDRSLDARPGHIVVAIL
DGAFTLKQLVRHRGVLRLEAAHSNYPPLDLACFGDVQIWGVAVHSIHSLN
PAQQISHSTQRLHE
>PMT0154 Eukaryotic protein kinase:Serine/Threonine protein kinase
MLRPHVSEPSAVVAGTVLAQRYRLDATILKSKPLQGVLWRGVDILDGERS
AVLHQISDAPTRQHFQKFWPELQSLSHPQLPRCGELFEAEVSLWAVRYWQ
EGVTYGKIQQQRAECQLLFGAGEVLQLLLQLLPPLIALHAKGLVHGDINP
SALLRRQQDGLPVLLDFGLLQPQGTTPWGDVTSAYRSIAQSSTEPAEAWM
DLHGLGVTALTLLTGRCPEELWNSDVRAWVWPQSFELDGSFRDVLERMLS
EAPDQRFEKASDVISALQAVIMPESIGPKLIADRPLALAPQAVPLSDHPS
STSQSLLQEHRSAHQPRRRRAEEREQAAEGRLWSVVGALLASALVGTAIG
WFLLSRSSPLGMDPVRDRDVVGNVPVESPSAVEVDHRQQLLSRLRALQVN
QSWFLQLVDASVLARFPHRGGRFPSDALDDVPLRQAWNDLAEEWLVRIEQ
LSPQLRRRLGELKNTDWQEQREGLSELGVHGHVIEQLVTAGAQKLLLGSF
NDQKPPEPYLQFWYAAALRSLADVQIETLKVRPSTPTEFSSRVSPGAARL
ISIQVPAGHRLVLEIKGTPLMQMTIYGSQGDVIAERGSLRVVTLEPEAGS
PVQVLVTNEGLATALVTLSCRADQQASMS
>PMT0475 GCN5-related N-acetyltransferase
MQDGRCNNKQLSRLMIHELNTPSELNEAYGLIRHLHPKLGKADFISRLGL
QRNDHGYVLLGLFQDLNPTDQKQLSSLAVLAGYRLASSLSLGTYFYLGDL
VTNPTYQGQGLAVQMLRYLEAIARDAGCRQIHLDAGVERFGAHRFYAKQG
FNIVFHHFAKELG
>PMT0683 conserved hypothetical protein
MATDSPAQERDEVSSFSLPARLEAILYLKGRPVTLKEMAELANETEELIE
QALLALTAGYAQRDTALEIQENNGRYSLQLCPGLGELVRNLLPVDLSIAT
LRTLATIALKKRILQSELIDIRGSGAYDHIKELVAQNFIERKRQSEGRSY
WLTLSEKFHRTFSVLPDLGSAEPSQVA
>PMT0127 Type II alternative RNA polymerase sigma factor, sigma-70 family
MADSAASKSLVKPAVVPARQLPADVDLVRSYLRDIGRVPLLSHEQEITLG
RQVQELMSLEQLESELEGQTGEPASRKELAKAAGLSELQLKKKLQSGRRA
KERMVSANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGY
KFSTYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMG
RTPTVSELAEFVELPEEEVKDLMCRARQPMSLEMKVGDGDETELLELLAG
EEELPSEKVEVDCMKGDLRTLLEKLPELQGRVLRMRYGIDGGEPMNLTGI
GRILDISRDRVRNLERHGLNGLRQLSETVEAYAAC
>PMT0805 two-component response regulator
MERSSMIWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQLEARLEFQRPD
LVVLDLMLPGDDGLSALRRLRDAGDDLPVVMLTARGEAVDRIIGLEQGAD
DYLGKPFLPRELSARIEAVLRRRCALPAGTPLAEGGDVVFGGNVLNLSAR
TLTQNGSPVVITSGEFSLLSAFVQHPHRPLSRERLIELARGPACDTDSRS
MDVQVSRVRRLVEPDSSRPRYIQTVWGYGYVFVPDGEPRSR
>PMT0867 product possible regulatory protein, luxR family
MGLSPLVFEVKSLTPRERFVLRLVCDGFTNREIGHQMFIAETTARGHVNS
ILRKLGVRNRAAAAAEGIRRQWVS
>PMT1357 two-component response regulator
MTNASSPRTRVLLVDDEPRLTELLRLELDVEGYEVSVAEDGASGLIKARS
DPSPNLIILDWNLPDFTGVDICQRIRSSGIKTPILMLTGHDDVTDRVKAL
DAGVDDYLTKPFSIEELMARLRAMQRRAEQFSGGSGIEHQPETIQVADLK
MNTSTRDVTRDNRTIQLSVKEYELLYFLMNGAGKVHERDAIMKAVWGEDF
FGDDNLLDVYIRYLRQKIEQKGTATLIHTVRGVGFILREE
>PMT0734 possible Arginine repressor, C-terminal domain
MIDRASFFEKLSAVDRTLIESYKQKGRWYPLDHQFLTADKDQWSELVNRE
RKRMLMNALEKLDCQESAVVDHVVLRGESLRSTASYLGISCMTVQRRVKR
ALRRLAVDCSELSPDADSPLRKQDVDPSGSVAPRSL
>PMT1068 Type II alternative RNA polymerase sigma factor, sigma-70 family
MAPLAVLSDVDLVRSYLRDIGRVPLLSHEQEITLGRQVQELMSLEQLESE
LEGQTGEPASRKELAKAAGLSELQLKKKLQSGRRAKERMVSANLRLVVSV
AKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFSTYAYWWIRQGIT
RAIAEKSRTIRLPIHITEMLNKLKKGQRELSQEMGRTPTVSELAEFVELP
EEEVKDLMCRARQPMSLEMKVGDGDETELLELLAGEEELPSEKVEVDCMK
GDLRTLLEKLPELQGRVLRMRYGIDGGEPMNLTGIAKTLGMSRDRTRRLE
REGLALMRTSSFELEAYMAV
>PMT1168 Helicase C-terminal domain
MLVHAGPGAGKTLGALLSFEAMQRGGGLTRFIVFCHRNSILNQWHQASKQ
LGLNLQDWEAFPEQPEILKQADGWAVTYQGAGLQLETLIAELKDWAGDGL
LAIADEAHHLGMNPDEPQGPAWGRTFLALTGSSKIRLGLTGTPFRADNLA
FCAARRVRVEAEGALVEQISPDLCVEPSELIHAGDVRPLEFRFQDGWVEH
SRPGQPDRDVSPLSAEVRESWRARNLRRAIRISDSSSIALQLLLRARRQL
KKVRRHHHDAAGLVIARDIEHAGGIAQLLQEEGDRVELVHSQDRDASARL
AAFQTSKADWLVSIDMCAEGFDAPRLRVVAYLTTVATRSRFIQGITRAVR
ISTARASLEPVPRHPSYVFAPADPLLMGHARSWSKTEPYLIRDSEAKAEE
NTTMGHWRGPSLPLEAVNDGAGAVIRLRTPNLPSFLQR
>PMT1499 conserved hypothetical protein
MSHFSTVKTHLRKREPLLQALKDLGYVPQEGERSVRGYRGQTVTAELAVI
MPEGGDIGFRLNSTTGAYELVTDLDLWRQSVPVERFLAQLTQRYALNTVL
ASTAQEGFEVAEQRNTDDGAIELVVTRWDS
>PMT1607 Bacterial regulatory proteins, AsnC family
MTTEAQAPTREATLTLLLRQGERSAANLAASLGISVQAMRRHLRSLEDDG
LVEASPTPTGPGRPSNLWQLTEQGHHHFPDGSENFALGLMESMKAALSPE
TFTSLLSQQALKKANLYRHQLGSGSIQDRLEKLVELRRQEGYETEWQPAP
DGVGWFIKDFHCSLQRIAEEHPSVCEQELLLMRQTFPDCLIDRVNWRLEY
GNCCGFQIKPTQGHD
>PMT2014 Bacterial regulatory protein, LuxR family
MATGKIPNSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVS
NMFTKTGSKNRVALLNWAMDHGKICRDGFNCCSLPDDSDSDS
>PMT1139 possible Glycosyl hydrolases family 32
MTAPALYSYAKVQSIEIDGKEDVITLRPVFKSNSFNSLDEGDHYAFQTTI
GDKTFTFETVVNNQGPSTTLGLENDDAAAIVEMLD
>PMT1079 similar to membrane bound transcriptional regulator
MTPKHQGSSGWRSMTTAIGVGLIAGLFLSIPLSRSLTQKTAGTTIPLFPI
SNPFNAWQGFGNRDVVVLGMDAGRGNTDVIFTIRVTGGETRITQIPRDSY
INSHSFGPMKVNALYAYGGIEAVKSELTRLMHRPISHHILVNLEGIRTIA
DLLGGIEVDVPKRLYYQDQSQGLYIDLQAGPQVLKGKDLEGFLRWRHDGE
GDFGRLGRQQLVLKSLFSKLTRAENLIRLPALISAAGRNIKTDMGPLELG
GLMTAMGTTELETTRLAATPFFSNGISYLDTEWPDAVEANGSSYRFLF
>PMT0380 SOS function regulatory protein, LexA repressor
MPLAASSPELLTSAQQELYDWLADYISSHHHSPSIRQMMQAMGLRSPAPV
QSRLRHLQQKGWITWQEGQARTLQLLGGLVSGIPVLGAVAAGGLVETFDD
VQERLDLAPVLETRGLFALTVNGDSMVDAYIADGDVVLMEPVPEPSRLRD
GTVVSALVPGSGTTLKHFHRNGASVRLEAANTAYEPIELPADQVQVQGKL
VAVWRQV
>PMT0437 ROK family
MATDLAQFIGVDLGGTAIKLGRFDQQGHLLAETELPTPQPSVPGAVTVAL
CEAIETVDPNHHAAFVGVGLPGPMDAEGRVARVCINLPGWLEVPLADWLE
PRLNRHVTLANDGNCALVGEAWQGAAQDFENVVLLTLGTGVGGGVMLGGQ
LFVGHNGAAAEPGLIGVDSEGPSCNSGNQGSLEQYASIDALQRLWAGDPE
ELSDRAASGDREALEIWETYGRKLGVGISSLVYVFTPQLVLVGGGLAGGA
VHFLPTVRQEVEKRVQAVSREGLQIRSCALGNGAGRLGAARLALQRLLSV
GNAP
>PMT2158 SNF2 related domain:DEAD/DEAH box helicase
MIGCGTPAWMVAVDRQCTPAPRNPTHTFCVAAMSLLHATWLPAIRTPTSS
GRPALLVWADTWRVATPAGPAATPALHPFTLSPDDLRAWLIERDLLPDEI
IDATACLTLPSRTVKPRNKTKNVSTESDEAKDNKTSWTGLPLQAGEPIPK
QTEWWPWQVQGLAVEPAAATAWLSKLPLSGNHPDLADELRWWSHLQRWAL
SMIARGRWLPQVELSKGEGYPHRARWTPLLNREDDRRRLEDLAAQLPLVA
TCALPWREPTGRRSNRMTRLRPEAMRAANPVASCRPRSGRLRVASLLEEL
LDAQLRTGFEASEQGLDPLLTAWQEALGSDSGVINLPDEEAERLATASNH
WREGVAGNVAPARACLELFTPGEGEDLWELRFSLQAEADPTIKVPAAAAW
AAGPKVLQLGEIRVEHPGEVLLEGMGRALTVFAPIERGLDSATPEAMQLT
PAEAFVLVRTAATQLRDVGVGVELPASLSGGLASRLGLAIKAELSERSRG
FTLGETLDWSWELMIGGVTLTLRELERLASKRSPLVNHKGAWIELRPNDL
KHAEHFCSVNPGISLDDALRLTATDGDTLMRLPVHRFEAGPRLQAVLEQY
HQQKAPDPLPAPEGFCGQLRPYQERGLGWLAFLHRFDQGACLADDMGLGK
TIQLLAFLQHLKAEQELKRPVLLIAPTSVLTNWKREALAFTPELNVREHY
GPRRPSTPAALKKALKGLDLVLTSYGLLQRDSELLETVDWQGVVIDEAQA
IKNPNAKQSQAARDMGRPDKNNRFRIALTGTPVENRVSELWALMDFLNPR
VLGEEDFFRQRYRLPIERYGDMSSLRDLKGRVGPFILRRLKTDKAIISDL
PEKVELSEWVGLSKEQAALYRNTVDETLEAIARAPRGQRHGKVLGLLTRL
KQICNHPALALKEQTVAKGFMDRSAKLLRLEEILEEVIEAGDRALLFTQF
AEWGHLLKAYLQQRWRFEVPFLHGSTSKTERQAMVDRFQEDPRGPQLFLL
SLKAGGVGLNLTRASHVFHVDRWWNPAVENQATDRAYRIGQTSRVMVHKF
ITSGSVEEKIDRMIREKSRLAEDIIGSGEDWLGGLGVSQLRELVALEDS
>PMT0304 
MTSLSKSTIYKMIAEKKFPRQIQIGPQQVVWTKHDVQDWMNQKIQEAAL
>PMT0784 putative type III sigma factor
MSIESQVMAQTSCKTLRRKRAECSGNQRSFSLPKSIQKRNEAVVEHLGLA
HLAATRQATRGGEELDDLIQEARLGLIMAMENFDANLGFKASSYAMARAN
GQILHFRRDRSQIVRVPWRLRDLYTRGMRLKQKQQNDGLKPFTEEQLAAQ
LNVSSDRWHQAAEAIWQTHLVSLDAKESSTGGNHVEKRVPLLERLKSPKQ
KEPDLQYQWLKKAIQRLTSHQQHLLYAHYIDDISLRQLAKREKMKENKLR
RVLQGLIKQLQLWSTKKSD
>PMT0082 
MTRIRLVEHAAGAPGMRWFGMGPDLKPSHGLLKLHRLLHKHAFWAQQRDT
SELKKMLAGSNVVISLWRGKRLVGFGRATSDGIYRAVLWDVVVAGDLQGH
GLGRQVIEALLIAPGIRNVERVYLMTTNSRGFYEQMGFERANNQQLLLLN
LKNN
>PMT1725 conserved hypothetical protein
MLEARSHQQLKHLLLQNSSPWPHHLTLSRLVARSLRRKDHTLIQLDPRSK
DLWWLGLLVPLCLEAKDAVMILSDQQRRRLLKVELPQLLTKGIKLPCWEG
HLPPSGNQLWLMNHSELIEAHHQGHLKSRQLIIPEADQLSQRLRDSMALS
ITPQDWERLRRAHPSAEASLMQLHERLSRSLFTHATRANAQVRLDGSEIQ
ALKDLMRLLGPSPSPWPAVLKADSRFWASWAELDHRLLQWQWHLQPLEPL
QNLPGLLRDQPSVLLSGSREHELVRTELDAAAFPATVIARLNEPNLQEPI
PLFAPRRQPLPNTEIYAEHLLDQCRRLILGRPGITVVLLDDQQLRRQLTS
ELAAEFGRRVVHETTAPESNGVVCCRWAWWLHHQDQLPLPEQLIVALLPL
ASVESPLTAARVESLKNQGLDWFRDLLLPEALSLLTPAIAPLRKNHGRLA
ILDGRLRGRSWGKQVLSTLEPWTPLQRLLPD
>PMT1405 possible DNA-binding response regulator
MQKTSQQIHPLLRRSRTVVATADRVLITSWVGWFDCLGPLVGAATGEDET
LSCLKSSNADLLICTDLLESGNGPSLVRKAKQLKPDLKALMLIQRPLLRT
LLDAIEAHCDGLCAHELVGSGTLLAALSAIESDGTYLDSVVAGVLRHGRL
GNGKSSRQIDNLSLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNL
LQKLPARDRTHAVVVAFRDGLVELPQRLPRWQ
>PMT1655 possible transcriptional regulator, luxR family
MQPQNQSNSFPLPPSAGSQRLSPAEQSVVTLLFEGLSNKAIAQRLILSPR
TVESHISHALAKTGCQSRLELTLWLIANCQPEAATSVVTLPGLPA
>PMT0346 Type II alternative RNA polymerase sigma factor, sigma-70 family
MVSAAPKSAETQRRRSSDPVSWYLTTIGRIPLLTPAEEIELGNQVQTMMS
LTQDGSVAPDDKEFTTHQRRMIRIGRRAKERMMKANLRLVVSVAKKYQGK
GLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQS
RTIRLPVHLSERLTTIRKVSLDLAHKLGAIPSRSEIAEAMDIPVDELDSL
LRQALTTSSLDAPVNGEERRSFLGDLIADSSLGEPLDKVEQRIHHEQLGR
WLSHLSEQEQHVLKLRFGLETHDRHTLAEIGRLMEVSRERVRQVELKALR
KLRNLTRRVPNEI
>PMT1083 putative ATP-dependent RNA helicase
MGRCLPDLKDQSGRQRLLSMTHTKAHEDVSCSPEKSASEISSTSADDGLT
TVAEATNQNNSGDGSVSVAAEACEETEATELVSEFDCFGFSEPLLKTLAE
KGYKQPSPIQKAAIPELMLGRDLVGQAQTGTGKTAAFALPLIERLHDHGS
RPQVLVLAPTRELAMQVADSFRAYAVGHPHLKVLAVYGGADFRSQINTLK
RGVDVVVGTPGRLMDHMRQGTLDTSGLRCLVLDEADEMLRMGFIDDVEWI
LEQLPEERQMVLFSATMPSEIRRLSKRYLHEPAEITIKSRDQEARLIRQR
CITLQNSHKLEALRRVLEAFTGEGVIIFARTKVITLTVAEALEAAGHDVA
VLNGDVPQNQRERTVERLRKGSVNILVATDVAARGLDVDRISLVINYDIP
FDSEAYVHRIGRTGRAGRSGEAILFVNPRERRFVGGFERAVGQPIEPMDI
PNNAAINQSRLDRLRQRLTTAAKTERDNSEETALLQELIQRVVQELSLSP
EQLALAALEFAVGPGPILVQADEGWLQQSTQRNRRNDRHESRGGSGRRPE
RSSRPPEDHMERFRVEVGHRDRVKPGNLVGAIANESGLEGRMIGRIQIFE
SHSLVDLPKGMPEDVFKDLKRLKVMNRELHIQRAS
>PMT1361 similar to chloroplast membrane-associated 30 kD protein
MGFFDRLSRLLRANLNDLVSKAEDPVKILDQSVADMQADLVKLRQAVAMA
IASQKRLRNQADQAEGQVRTWYERAELALQKGEEDLAKEALTRRKGFQES
STALTNQLKGQEGQVETLKRSLVALEGKIAEARTKKDMLKARAQAAKAQQ
QLQSAVGNLGTNSAMAAFDRMEDKVQALEASSQAAAELAGADLESQFAAL
EGGNDVDDELSALRQRLEGGAEAVALPAAETSSLEESKDANGPEVEAVKV
AEVDAELEELKRAIDKL
>PMT0146 two-component response regulator
MSHPGGLSQYQSNDGSETQAPGNPKATILVVDDEPAVLRILVMRLQLAGY
RVICAEDGEEALEIFHREQPDLLVLDVMLPKMDGFAVCRRLRAESCVPII
FLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPGSATA
EIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREP
GRVVPRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILT
VRGIGYSSQRVGDSPAPAPAPAPAPAPAPAPASASVAVAS
>PMT2246 Type II alternative RNA polymerase sigma factor, sigma-70 family
MGIPLESAKGASLTPSSEVVLPSTSKQRSETANRAGRNGQASRNQNRQGG
RLGTDAIGFYLSSIGRVPLLTAAEEIELAHHVQAMKELLELPEQDQTPRQ
RHKIRMGKRARDRMMSANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERA
VDKFDPAMGYKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRR
ISRELSHRFGRQPNRLELAHAMGIQPQDLEDLIAQSAPCASLDAHARGEE
DRSTLGELIPDPDGAEPMEGLDRSIQKEHLGGWLSQLNEREQKILRLRFG
LDGEEPLTLAEIGRQISVSRERVRQLEAKAILKLRMMTNHQQAA
>PMT1141 conserved hypothetical
MRTLIQPLFLLIATASLGLGQGQPAKAHAIESTLNYLDGSLELQSYFSTG
TPVEGAVVRVLEANGAPGRELGRMDQQGKLCLSLPNMQEGTLDLQVDAGP
GHRDYLMLPIRSGKVKLDEVVSQPKTPQTPWFLASTGSPLLLGLAGVLFS
VSEQRLKF
>PMT0581 putative DNA helicase
MVAEPFRQSSNQSTQGLSRDQLQHLLSWMRILQQALTLEAENGFKNLEGR
QENFHAFLVRQLAEPPSGLLPTKSQARLSQLAEAFASYPDSSESARRRLV
TDSRQLLHGIRQGLEPPTPIGPPRLKKRGAERQRQMPLPSGNRSLTLESP
LSEVKGIGPKLAERLAGLGLLLVKDLLQYYPRDYVDYSSLRRIQALEAGE
AATIVATVRRCHGFTSPRNPNLSILELQLQDPTGRLKVRRFFAGRRFSSP
AYLKSQSRLYPPGVTVAVSGLVKGGPYGMSFQDPLIEVMESPHSPLRSQS
IGRLLPVYALTEGLTADRFRDLVLQILPLAASWPESLPEQRRQVLRLPRR
SDALVAIHHPDDQQTLQSARRRLVFDEFLLLQLGLLKRRAELRRCSAPVL
QTAGRRDGLVARFLELLPFPLTAAQQRVLTEIEADLVLSEPMARLIQGDV
GSGKTVVAIAALLTAVEAGWQGAFMAPTEVLAEQHYRTLCCWLPQLHVSV
ELLTGATTRIRRRQILDDLVNGSLKILVGTHALIEDPVAFSRLGLVVVDE
QHRFGVKQRNRLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELP
PGRTPIQTQMIRGCDRDQAYQLIRDQVSRGQRAYVVLPLIEDSEKLDLRS
AVKVHAHLSEQVFEEFTVGLLHGRLSSSEKQGVIQSFAAGDCQVLVSTTV
VEVGVDVPQASVMVIDHADRFGLAQLHQLRGRVGRGAAASHCVLINDSTN
PLARQRLEVLVRSSDGFEIAEIDLRLRGPGQVLGTKQSGLPDLALASLAD
DGAVLEEARDEAQRLLSEDPNLTDHSRLKELLEAQWQHLSGTAHLN
>PMT1667 conserved hypothetical protein
MQCPSCQNTDSRVLESRAADAGRSVRRRRECLHCDFRFTTYERVETVPIT
VLKRNGNRETFNRSKILNGLTLACQKTGLEQDRLESMVNELELQLQQRSG
REVNSAEIGEMVLDQLSEMSEVAYVRFASVYRDFRGVNDFVAALEGIHAN
KEQLAAVR
>PMT1191 possible acetyltransferase
MISSSSLTPEVLEQAYGHRARECPSSNEQINLVFSQDRSFDLVELEQLLE
AVGWSRRPMRRVRLALDHTLLKVGLWRHDPLFPRLVGFARCTGDGVLEAT
VWDVAIHPIYQGVGLGKHLMDYTLESLKEMGVKRVTLFADPGVVDFYERQ
GWTLEPDGHKCAFWYA
>PMT1527 conserved hypothetical protein
MNQRPVLRRCVTCRQLLDRQQLWRVIRDHQEGVVLDEGMGRSAYLCPNEA
CLEEALRRKRLQKALRCQVPNSVVEVLQKRLNHSFDSAAEAK
>PMT0012 Protein phosphatase 2C domain
MSSKSPRRHPTPSFRSASQQVSASTSLRQLLDSLSREQRRNQDLLVSLGF
ALRSFTNLHRFLELVPVVASRLVGVQGALLVPFQVDGRLWREQLQAVPFD
QSQELVRQLASFEAGFATGFGTDEAQVLAMDQLVQRHLARAGMFATSLVA
RGQQRGRLYVFDPQAALIWSDVHRRHVQLVADLTGVAIENDLMLQEARLH
ERVDRQLSIGAEIQAQLLPDRCPVIEGVELAARCRPAFQVGGDYYDFIPT
RPELIGRRKERGRWGLVMGDVMGKGVPAGLLMTMLRGMLRAEVLSGLPPN
RILHDLNQLAQEDLAQSHRFVTLFYSDYDPRTRRLRYANAAHNPPLIWRA
EQRSVSRLDVPGLLIGLQPEADYSCGEILLKPGDVIIYYTDGVTEAPGIT
GDRFDEARLIRALEGSCRSGLGAQGILDQLFARLDRFVGVDHQLEDDASM
VVLKVPEEVTLPSVSLA
>PMT1001 arsA, Bacterial regulatory proteins, ArsR family
MGTTIAPPHLLDSSRARTLMKALADPIRLQVIEELACGERCVCDLINELS
LGQSRLSFHLKVLKDAGLIVDRQSGRWVYYRLEPKALGILQDWLSSLAEQ
CQKPTINCE
>PMT2026 hrcA, Negative regulator of class I heat shock protein
MTEHKRRATPPYHQDPDVTALESLPARQQQVLQATVHHYVDTIEPVGSKT
LVQRFGLKASAATVRSAMGALEQRGLLTQPHTSAGRVPSPQGYRHYVDCL
LPPPGSAAQHLERELTNLSLRWAALDDLMWQLARRLTDFTGLMSLITRPA
RPKPTLQAVRLVRSGDRLLVMLVESSNQASHLNLRLPHEASNELEAIEEW
TRDQLATTGNGSLDWSSLPPQLNLSGSLLREAIHSHSQAQTPAESDAVFH
GMSRLLAQPEFSSSASLQPLLELMDTQPAAVVPVGSEQLGGVWIGAEHPK
SALEACSVVQAPYHSSGEGIGQVALVGPMRMAYATAKAAVSSVANHLERL
LC
>PMT1072 lytR, possible LytR-membrane bound transcriptional regulator
MPLSSTRLMPTQDSGKTPTPSSVGHWMGKYPGRTLLRLAATLGGLWLAST
ALGLLWPKPDQVAKGDPSVDKATSLAPLPKQPIIILLVGIDSDQLNDLTN
QAAPMGSANADSLMLVKVAAKQPVEVLQLPIELAVTLPGSNGMQPLASSY
GRGGIALTADVIAEILGLRKGQPHRFVVIPRKALRVLVDGLGDVEVNLNA
PFKHQDNAQNYSVDLQAGRQRLNGGQVEQLVRYRAGPEEESGRRQRQQWI
LNGLSRQLRQPNTLAKLPKLLKEFSKEVQTDITPRELLSLTAAALSNNQF
PIISELPLAPRAGEQTLRQLKASHPMPLWPQGN
>PMT1526 nusA, N utilization substance protein A
MALVLLPGLNNLIEDISEEKKLPTQVVEAALREALLKGYERYRRTLYLGI
SEDPFEEEYFSNFDVGLELEDEGYRVLASKIIVEEVESEDHQIALQEVMQ
VAEDAQIGDTVVLDVTPEKEDFGRMAAATTKQVLAQKLRDQQRRMIQEEF
ADLEDPVLTARVIRFERHSVIMAVSSGLGRPEVEAELPRRDQLPNDNYRA
NATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIV
AVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELR
GEKIDVIRWSPDPGQYIANSLSPARVEMVRLVDPEGQHAHVLVPPDQLSL
AIGREGQNVRLAARLTGWKIDIKNSQEYDQASEDTTVAELISQREEEEAL
QRDAEARLAAEQATRAEEDARLRELYPLPEDEEEYDQEEPAKTMAEDENE
SDGQSDDLSNQPDASSEQRSNEESLEEEDRAR
>PMT0010 nusB, Antitermination protein NusB
MSSSPPVLVSIMQSRSLARELALLVLGQIPERESSRLKTISLESLLQKAF
DTLSQHWREGLDTCAVELENAQQHLLDSEFQDRDSSSTSQVREHLQACLI
GAEQVINGVSTSLEISRLLALGNQEQIRLGALERVRLVIEQRNSIDASID
AVMEGWRLSRLPRIDRDILRLAVVDLTALQTPFAVACNEAVELAHRYSDD
QGRRMINGVLRRLHDASTMTLA
>PMT2087 nusG, transcription antitermination protein, NusG
MSELELTPQEPSEVLELPAPNDGEEGTKAPTPAARTTVARWYAIQVASSC
EKKVKATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFPG
YVLVRMVLDEDTMMAVRSTPNVINFVGAEDRRATGKARGHIKPRPLSRQE
VDRIFKRAAEKKTLVKVDLAEGDQILVTSGPFKDFQGEVIEVSGERSKLK
ALLSIFGRETPVELEFSQINKQN
>PMT0994 phoB, two-component response regulator, phosphate
MTVAPPKVIPPQSLKVFRLLVVEDDDAIRETIGEALCAEGFETILCGDGF
EAVSILTSQPRHKFDLIILDVMLPGIGGLDICRRLREFDPKTRIFMISAR
DNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRRYQERSDDSNAKMI
EYGNLCLYIEECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQILER
IWGDDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFGYRFG
>PMT2007 rbcR, putative Rubisco transcriptional regulator
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEV
SLFDRGGRKAQLTEAGRLLLSYCERILSQCQEACRALDDLHDLKGGSLVI
GASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAI
IGGELPSELNDLLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFI
SLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKNAVQSGLGAAF
LPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDV
LPVFASADSPIRQNRAVLADVNG
>PMT0510 rimI, GCN5-related N-acetyltransferase
MASLLKIRPLQRNDIAMVTQWARAEGFAPGVGDVSIYRHTDRQGLWVGWL
GNQPVGCIAGVRYNAAYGFIGLFLVIPEHRGHGYGVELWEHALEHLVDLP
CVGLEAAYDRIDDYAGWGFAISSPTTRWQRICDGNLNDDDDYSNGEGLQL
LEGDSIPAMAVQSYDAIREPSPRPHFLSDWLQHPAGNVLALVDGNDCCHG
FGRIRPCLLRDGEGWRIGPLLADSPQLAELLLKRLIQRHPGVVILDAPGG
NSSAEPLLKRLGFSAVSQTLRMYRGEQPSIPLDEVYGLACLELG
>PMT1949 rnc, putative ribonuclease III
MTHRSKTKTSRTTPKNLSNERVQQLQNLLQKLALVDPARSKSCPGTEPRG
LAVIDEALTHTSAQEIINHERLEFLGDAVLRLAASEYIDRHFPRMNVGER
SALRAHLVSDRWLAEVGQRIGIESVLIIGPMAAGDASAKPTLQAEATEAL
IGALYECWQSLEPIHRWLTPHWQEASSAVLTDPHRLNSKSALQEWSQARG
LGLPRYECAERSKQHGDPQRYVCQVHLDDRPIGEGWGGSRRNAEQEAARR
SLQALTQSANDNSSRTEQKAMLLKDGDQSPC
>PMT1988 rpaA, two-component response regulator
MKPCILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLI
LLDLMLPNVDGLTLCQRLRRDERTAGIPILMITALAGTKDKVTGFNSGAD
DYLTKPFDLEELQVRVKSLLRRTDRAPVGTNAHHEILSYGPLTLVPERFE
VIWFERPVRLTHLEFELLHCLLQRHGQTVAPSLILKEVWGYEPDDDIETI
RVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPTGGQLEGIQDLLIQAR
QEREAREAQNKQGERASA
>PMT1994 rpaB, two-component response regulator
MTATSPSKETILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHN
CEPDLVVLDVMMPKLDGYGVCQELRKESDVPIVMLTALGDVADRITGLEL
GADDYVVKPFSPKELEARIRCVLRRVEKEHVAGIPNSGVIQVAELRVDTN
KRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHV
DTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIIDSLAPEGL
>PMT1755 rpoA, Bacterial RNA polymerase, alpha chain
MLQYQIDRIEHQVADDRAQTGVFLIGPLERGQATTLGNSLRRVLMGGLEG
SAITAVRIAGVNHEYATIPGVREDVLDILLNCKQLSVNSRTSELEIGRLV
VTGPAQVKAKDLQFSSQVQVVDGDRQIATVHEGHSLELEVHVERGIGYRP
VDRHNEDVSAIDLLQIDAVFMPVRRVNFTIDETAVAEGGSTRERLRIEIV
TDGSTTPDDALAESANQLIELFQPLATVTMVEEPGLEPEPSAESQIPLEE
LNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER
IGISIPQSRTSA
>PMT1507 rpoB, RNA polymerases beta subunit
MSSSAIQVAKTATYLPDLVEVQRASFKWFLDEGLIEELDSFSPITDYTGK
LELHFVGNEYRLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQ
EVFIGELPLMTERGTFIINGAERVIVNQIVRSPGVYFKDEQDKNGRRTYN
ASVIPNRGAWLKFETDKNDLLHVRVDKTRKINAHVLMRAMGLSDNDVIDK
LRHPEYYKKSIEAANEEGISSEDQALLELYKKLRPGEPPSVSGGQQLLQT
RFFDPKRYDLGRVGRYKINKKLRLTIPDTVRTLTHEDVLSTLDYLINLEL
DVGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETD
SLTPAQLVNPKPLVAAVKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP
GGLTRERAGFAVRDIHPSHYGRLCPIETPEGPNAGLINSLATHARVNQYG
FIETPFWKVENGRLIKEGDPIYLSADLEDECRVAPGDVATDADGQILAEL
IPVRYRQDFEKVPPEQVDYVQLSPVQVISVATSLIPFLEHDDANRALMGS
NMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISRVNGMVTFVDATAII
VRDEDGVDHTHYLQKYQRSNQDTCLNQRPIVCQGDAVIVGQVLADGSACE
GGEIALGQNVLVAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEA
RQTKLGPEEITREIPNVAEESLGNLDEMGIIRIGAFVESGDILVGKVTPK
GESDQPPEEKLLRAIFGEKARDVRDNSLRVPSTERGRVVDVRIYTREQGD
ELPPGANMVARVYVAQRRKIQVGDKMAGRHGNKGIISRILPREDMPFLPD
GTPVDIVLNPLGVPSRMNVGQVFECLMGWAAANLDCRVKVVPFDEMYGAE
KSQQTVEAYLKEAAKQPGKEWVYNPDNPGKLQLIDGRSGEPFDQPVTVGY
AQILKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALE
AYGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPRPGTPESFKVLMRE
LQSLGLDIAVYTDEGKEVDLMQDVNPRRSTPSRPTYESLGVADYDED
>PMT1506 rpoC1, RNA polymerase gamma subunit
MTNSNLRTENHFDYVKITLASPDRVMEWGQRTLPNGQVVGEVTKPETINY
RTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESR
VRRHRMGFIKLAAPVSHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVV
LDPGDHKELKYKQLLTEDEWLEIEDEIYAEDSTIENEPMVGIGAEALKQL
LEDLDLPDVAEQLREEISSSKGQKRAKLIKRLRVIDNFIATNARPEWMVL
DAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFR
QNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQN
IVNNIKAAKKLIQRADDEVMQVLQEVIEGHPILLNRAPTLHRLGIQAFEP
KLVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLAIESQTEARMLMLASNN
ILSPATGDPIITPSQDMVLGSYYLTALKPGASVPEFGDQSRTYSGLEDVI
HAFEDKRILLHDWVWVRFNGEVEDEDEIEEPIKAELLSDGTRIEQWTYRR
DRFDEDGALISRYILTTVGRVVMNYTIIDAVAVA
>PMT1505 rpoC2, RNA polymerase beta prime subunit
MTSTSPKSRKPSTKTTKSKSKSKSKSKAAKAAAAGASPALARTPPQFRNR
VIDKKALKQLVAWAYKTHGTAVTASMADNLKDLGFRYATQAAVSISVEDL
KVPEAKQDLLGQAEAQITATEECYRLGEITEVERHTKVIDTWTETNERLV
DAVKKNFNQNDPLNSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIID
LPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQD
VIVREDDCGTTRGIIVKAEDGGFGSRLVGRLTAEQVVNVDGEILAERNTE
IDPPLSKRFEKAAITEVMVRSPLTCEANRSVCRKCYGWALAHNELADLGE
AVGIIAAQSIGEPGTQLTMRTFHTGGVSTAETGVVRSTVAGTVEFGPKAR
VRGYRTPHGLEAQQSEVDFTLTVKPSGKGRAQRIDITTGSLLFVSDGQEI
EADVTVVQIAAVAVKKSVEKATKDVICDLAGQVRYEQVIQPREVKDRQGN
ITLKAQRLGRLWVLAGDVYNLPPNAEPVVQGNVKVERGQVLAEASQASEF
GGEVRLRDSIGDSREVQIVTTSMTMKDFKLLGESTHSGELWHLEAKDGTR
YRLNTIPGSKIGNGEVVAELADDRFRTQTGGLVRFAPGLAIKKARSAKNG
FEVNKGGTLLWIPQETHEINKDISLLMIEDGQWIEAGTEVVKDIFSQTAG
IVTVTQKNDILREIIVRSGSFHLCTETKALERFTGDGQIVNPGETIAKGI
NSEAMVFVQTVDTPEGTGLLLRPMEEYTIPNEAQLPELTHVKQPKGPHLG
IKATQRLAFKDGELIKSVEGVELLKTQLILETFDTTPQMTVDVEAVRDKR
AKTIERLRLVILESILVRRDTISDSSHGSTHTELQIEDGQSVKASDVVAT
TQILCKQEGIAQLPVVQEGDPVRRLIVERDEDTITVTTNGSPLVEVGQRL
VDGDSLAKDEPSSCCGEVEEVDGKAITLRLGRPYMVSPDSVLHVRDGDLV
QRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRESAVLCKKPGTVEI
KQGEDDESITVTVIEADDAIGEYPILLGRNVMVSNGQQVHAGELLTDGPI
NPHELLDCFFEDLRGRKPLMDAAQEAIAKLQHRLVTEVQNVYKSQGVSID
DKHIEVIVRQMTSKVRIEDAGDTTLLPGELIELRQVEDTNQAMAITGGAP
SEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKE
NVIIGRLIPAGTGFSGFQEELRAEAGPHPDILAEDPAGYRRMQNLRPDYT
VDMPAAPAASSTAVLADPSDADLEATRSRHGIDPAASNFAAFVRPTGENE
LEEEQLPDPSALEGLQQEGLLTEE
>PMT1442 rpoZ, putative DNA-directed RNA polymerase (omega chain)
MITSGVEPKDLAKRGESLIRQSSNRYLTTVRIAFRAKQRRFDDFDGLLEE
SSVKPVQRAIVELSDEQDQPDLLPG
>PMT1272 sigA, rpoD, Putative principal RNA polymerase sigma factor
MGSAPSFPLSSFIPSPAMSPAATQAAAAKAQPKASAKTAKPQVAKGTAKT
KAKKVKATAAKAKTAAKPVSSAAKASSPKAKKAKATPPPTVSKNLDLTAD
QLLATAATSAPKASAETESSQAAAKATSEADAKARALANIKIGPKGVYTE
DSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAEQFNSDHGHYPN
NKEWASLVEMPNIKFRRRLMLGRRAKEKMVQSNLRLVVSIAKKYMNRGLS
FQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTI
RLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMTIEKLRFIAKS
AQLPISLETPIGKEEDSRLGDFIESDTENPEQDVAKNLLREDLEGVLATL
SPRERDVLRLRYGLDDGRMKTLEEIGQIFEVTRERIRQIEAKALRKLRHP
NRNGVLKEYIK
>PMT0456 sigB,rpoD, Sigma-70 factor family
MVSSLSAYLGEIGRHQLLTPEQELTMGRKVQAMVALTNRCHLAGGAGPEC
EYSDDQRLTIRRGEKAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGT
LGLTRAVEKYDPTRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNVNEK
LTKLRAAKSRLMQNNGLPPTAEQLAKTMRLPMAEVEDLLACELRSVTVSL
QGVVKSKSDPSELADVLPSEEIPPMERAEMSERTASVWTLLNRANLTPKE
RMVVTLRFGLDGSHEWRTLAEVARHMSCSREYCRQVLQRALRKLRKAGMQ
SGLVESTL
>PMT2111 spoT, guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
MPNVTTAPKSTQANAGCGSEVCGLPEIRTHPFSSVDDYGIALPEWLKDCI
KHIPPGLGQSCPIDSEALLAAAFDLAFQLHEGQFRASGDPYIVHPVAVAD
LLRDIGASASVIAAGFLHDVVEDTDLTPEQLEDYFGAEVRELVEGVTKLG
GINFTNHTEAQAENLRKMFLAMASDIRVVLVKLADRLHNMRTLGSLQADK
QQRIARETREIYAPLANRLGIGRFKWELEDLAFKLLEPEAFREIQQEVAT
KRSERENRLANTVELLTERLASAGLDTCEVSGRPKHLYGIWSKMQRQQKA
FHEIFDVAALRIIAPSVETCYRALAVVHDTFRPIPGRFKDYIGLPKPNGY
QSLHTAVIGKHRPIEVQIRTPGMHRVSEFGIAAHWEYKEGGSPAAANKER
FNWLRQLVEWQQEGGNDDHNDYLASIKEDLFDEEVFVFTPKGDVVGLRKD
STVVDFAYRIHSEVGNHCHGARINDRLCPLSTSLQNGDFVQVLTSKTAHP
SLDWLNFVATPTARNRIRQWYKRSHRNETIQRGKDLLERELGRNGFDALL
NSEAMTRVAERCNLTVTEDLLAALGFGALTLQQVLNRLREEIRLQTIEPE
QPLSNVNVAKRLVAQVESSPARLPTSDGVPILGVEGLDYRLGGCCSPLPG
EAILGTVALGNHGITIHRQDCVNIGSVPSERRLPVRWNQGAFIENERFPV
QLRIEVIDRVGILKDILMRLSDNHINVSDARVKTSYGKPACIDLRVELNS
AAQLVSMMDQIRSMADVLDIARTGLS
>PMT2230 ureG, Urease accessory protein UreG
MSSKLRLGVAGPVGSGKTALVEAMCRRLRDQLQLAVVTNDIYTQEDAEFL
TRVGALEPERIRGVETGGCPHTAIREDCSINRAAVEDLERNFPDLDVVLV
ESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKI
DLAVHVGADLEVMKRDTTRMRGERPWCFTNLRSGDGLESVLHFLLQQLPN
RP
>PMT0766 zam, putative acetazolamide conferring resistance protein Zam
MKFTVADLLDQLPPTGGLEIKKLEKILKLTTKADRDGLETALQALLKLGI
VNNEEAGAIKRSDDESLIEARLRCSSKGFCFALRDDGGDDIYIRDHQLNH
AWNGDRVLVRITRDGGRRRSPEGGVQCILERSTTSLLGHVERKDQNILAI
PLDDRILATIQLPDGDQAHLNDGEQTSVVEVKLDRYPIAQFPAEGHVARS
LPLNGGPSSDRDLLLTKANLQDRPAPPRSSLKTPTAKHRQDLSSQPALLL
RSWQVSDAPPLPAVYVEPHAGGTRLWIHAPAVAERLTIGNNLDLWLRDRA
EALCLGEVWHPLLGQILSKACSFKVGEINDAVSVALDISADGEVTNWHFS
LSSIKPVAEIGPKTLTALSNRKPKARTVPAALKPVKDHLAQLETLIFCAR
TLQMGEQASGSIELDLAVPELQCLGDLRWADPDSYHHQWALPLDQTDPQS
VLSPMIRAAHRAWAQHAQNLQLPGLVIEASEADNNTLNDVAKSALALDIA
LELDEEGRPAATELAKAFSTTACRRVLDQQLRHALPETLLRLGINDSQKE
NGNIESDHEDTKTKDSNLQSPWCCPTIHYTDLVNQEIIVTLLSNGKDRPN
VRQKEKVVLGSRECWQQIKWPLFSTSQAKNLEEICSKSLVHRLNTLRRQA
EELRQDLIAMVQARIVEPLVGEEHQGVISGVQSYGFFVEIPPSMAEGLVH
VSSLNDDWYEYRSRQNRLVGRKNRKIYQLGDQVNVKVVKVDALRNQIDLE
VNGSAITVEANMNVNSDPTNQATTTKKSEVKGKITKNNEQLVSSSEA