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# Prochlorococcus marinus subsp. pastoris str. CCMP1986, MED4

>PMM0169 two-component response regulator
MNDTNQINNEAIRKSKILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDG
WEKAQTIFPDLIISDIMMPRSNGYALLEKIREDEKLGGTPVIFLTAKGMT
LDRTQGYLAGIDDYISKPFDPDELSARVKNVINRQERLLKEAARFADIDV
SKMAKQITEIKSMLTDQNPLNKENSIDIPSFTPREASVLQLVAEGLMNKE
IARQLETSIRNVEKYVSRLFIKTSTSSRTELVRYALENHLVK
>PMM0936 putative SOS mutagenesis protein UmuD
MKIPLLSDSVSAGFPSPADDYAEENIDLNEHLISNPFSTFFLRVKGDSMI
NSGIKDKDLIIVDKSLTAKPGNIIIAMIDGEFTIKRLSIKNNELYLKAEN
HKYPDFSFRNHIDIQIWGVVIYSIHSYL
>PMM0909 conserved hypothetical protein
MVTRVEAVLYLKGRPISKKNLSEITNADINSIDKALRELKEKYSNTKSAI
ELNEINSCYCLELKSILNEFVEDLLPSELRTSELRTLATIAIKKKILQSD
LIVLRGSGAYDHIKELTNKKFIIKRKQKDGRSYWLSLSEKFFQTFAVSNE
YLSQIGGNKK
>PMM1619 two-component response regulator
MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDL
IVLDVMLPKMDGFAVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDY
LSKPFSPKELEARIATILRRMGPSITVTETKEVPSGKGVMKFGNLVVDTN
RRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAEILEQLWGYPPRRAA
DLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYASQRVGEKATSLAS
>PMM1640 putative acetyltransferase, GNAT family
MKPVFLIKHSQGALGLRLFGLGPNLKPTKGLFKLQQFLHRNAFWAKDRTI
KDLKKCLANSDVVVSIWSNNEPVGFGRALSDGIYRGVLWDIVIDQDHQGK
GYGKMIVKNLLESNKIKHTKKIYLMTTSKKMFYSQVDFKEVTSQNLLVHE
M
>PMM0994 GCN5-related N-acetyltransferase
MNLKQITQKDQLDLKKIYFDSIISIDQKIYTSEQKRAWASQAWDNKYFNL
TLKEGKGWLINEREKIIAFASRYPNNRISLLYCRGDSQRKGYGTKLLKKI
EKEAIKEGLPCLTTEASLISYKLFLKNSWKIIRKEKIIIKNITFERYKMI
KNF
>PMM0080 conserved hypothetical protein
MIDDINFLLVGNSRLHWAENLQSKYKFFHTQKNNNVPQNINLNNLIWASV
GKLPDLSLKQENRISTQDIKLKNLPNHFGVDRALGCLEALKIIENPSRKD
LLVADFGTTLSITKLTAKGSIIGGQITPGFLTQLRSMEKYTDNLKAPKKY
DIPVQDFLINTEDSMLKGVSNSLMGVINLSFNPAKDILIVCGGDSELIGS
LLKQKKEEIIISPNLVMQGMITHFNH
>PMM0154 Bacterial regulatory protein, LuxR family
MQMVEEGVNDIDMMGLSSREMEIINLVADGLTNQEIAVRLTISKRTVDNH
VSNMFTKTGSKNRVALLNWAMDHGKICRDGFNCCTLPDSDQD
>PMM1113 two-component response regulator
MQSTEQISASAPGSSQLPSTSQTPSRVLVVEPHPTLRTVLVQRLRQDGHL
AAAVGSAIEAVDLCREQSPDLLVSAEILEQNTAMRLAQQLGCSVIVLTAR
SGVEPLVSLLDEGADDVLRKPFGLEELAARCRTLLKRGRIGLQEKVAVGP
LEVHLLLRQVTLSEKPVELSPREFALLCALLMPPGMVRSRQELLRLAWPP
FSGGPRSVDTQVLTLRRKLEQAGLGEGGGITTVRQQGYRFSIDSI
>PMM1574 conserved hypothetical protein
MQYFSQKKLILPEGYFINSSQVPTAKDLNRLLVNSGCESFPTQKISLAIK
NSNFFFTIQNESKNKLYGFVRVTSDRGLNANLWNLCAEKGNNQNLFYSIL
LQVTLEKINREMPGCSISVQAPVTSFKSLEESGFILDPNGIRVMSFKL
>PMM1564 conserved hypothetical protein
MLEILSHQYLKRFIRSHDIDWDHIYSFGRIISKCLQTNETYLINSEIFST
NIWQPALLISIFLFEENSTFVLSQDKINFLKNNYLGELKRLGLNFILEND
QIIFSNHRVSFISLEKLLGDVNIFNARNHRIIFSGIENIKEDLKNYFRIS
FLKKNWFHNFEQASSKSQKIISTYNLLKKKFFLRKVLDSRSIFLDKEEIN
FLSNFFFENSSYSDQFLRVSNALSAGWACWVTLDDINFEWNFYLEPMDEL
SQIKHLLINNKFVFLSALREDNFFQKYLKKESLNIDLVMNFRSNFIENKI
LIYVPPRQMLPNNPMFTKNILDKSKKLIIFSKGLTLFLSDDVDLKLKFAT
ELASIYGKRVLLENIPLFNNEILCASYTWWINNSYCIQSPEQIIIPLLPI
PSIKEPINKLTISHNRNLSKDWFREFLLPEAIKKLERSISPLRKNAGKLI
ILDGRAHKRKWGRLILKSIQPSKQINYMLPYD
>PMM0868 probable ribonuclease II
MRDLTNLKTFIIDSKDPKEVDDAFSLELFEGNKKKLWIHISNPCKLFLTD
SKIDIDARSKSSSLYLINQYIPMLPTEIIEKANLNQNKISDTISASIIFN
DDGSINKYEIVEAKIKPKYQLLYEDAEEIIELEPKEEFEIVEIKNLLLNS
INYRKKQGAIIFDTPGYKINIKNGNVEIINIQKSISHSIVSESMILMGYV
TSLYLFENNIATPYRTHKINCDAEEILERYKDSDIKYSILKQYMGKSYIT
TKANKHESLGLLKYTQCTSPLRRYLDLIVQRQVFNNINNIERLSHNKINE
LIDITKIKQLENNNIYKNDKLKYLNIFFKNEIKTSHKIIFIKWINNKKGI
ALVYFPEYSLELLIVLFISVETYTNKIYKVKYNISNNNLLEFIH
>PMM0363 possible MarR family
MTQAKLEGLLKIDNESYNLLRVLTMFMKLDNSQDVPLQAMAVFWYVATYQ
NCTKKDIEKYFDMSKASASRMTDYISRYHRLGKAGLGLVSKEQDPKDKRR
TLLKLTRKGKDLIEKSFNTLYEDMKSFEAEFEE
>PMM1559 conserved hypothetical protein
MPLLLTGKKFHNDLNKNKCLAMFAPLEGGYETRLLRRMRAKGFKTYITSA
RGLGDPEVFLLKLHGIRPPHLGHQSIGRNGALGEVQQVIPQASELFNEND
KDKLLWLLEGQVLSQSELESLIKICTSDNKLKIVVEMGGSRKLEWKSLND
YILNEF
>PMM0577 Putative type II alternative sigma factor, sigma70 family
MSSLSDFLGEIGRHQLLTPEKELTMGRKVQEMVVLINRCQTAGGKGPDCE
YSEEEKKKIKIGEKAKNEMITANLRLVVNLSKRYQGKGLDLLDLIQEGTL
GLTRAVEKYDPSRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNINEKL
TKLRAAKSKLMQLKGFPPTSIELANELKITKEEIDELLSCELRSITVSLQ
GTVKSKSDPSELVDILPSDQTPPMELAELAERTASAWTLLDKANLTEKER
KIVSLRFGLDGSNEWRTLAEVARHMSCSREYCRQVVQRALRKLRKAGIQN
GLVDSVS
>PMM0011 Protein phosphatase 2C domain
MSKIQKEKLLSNDVIQEFLEKDYKFPLHENDKFIETASSLSYYLKSFSNI
KRFLDYISLILKHTFNNQLSFIIPLNENGEIWKQNIKFAGATKNLKMDDE
IKSYFNNFDFSKNFKLKDDISFEKVLNNQFKEYVIKSYKVLSRGKCRGFV
YTFKKDTFNDSLKYERNLNFIISCLAIGLENYSLIKAKKKHENVDREISI
GAEIQSQLLPDYCPTINGVDLAAHCRPALQLGGDYYDFMSLKTNISEKRR
EKARWALVIGDVMGKGLPAGLFMTMLRGMLRAEVLTGLPPDRILHDLNQL
AIYDLDQSHRFITLFYSDYDPRTKKLRYANAAHNPPLLWKSSEQKIIKLD
SEGFVLGLQNDAEYQCGQIQLNKNDAILYYTDGVTDTSNALGERFDEERL
IQSFSKLCQQSLKSKDILNKIYKILDEFTGKNRQLEDDASIVVFQLD
>PMM1493 conserved hypothetical protein
MIQKSPVMRKCISCRTTFDRNNLLKITNDHKLGIMLNQGIGRSAYICKSK
KCYTDSKLKKKLQKALKGILNPEFIDIFEREIANYK
>PMM0357 TENA/THI-4 protein
MLLSNTLWESNYELALLSLKSKFVQGLKTGNLPKNIFQEYVAQDYYFLES
FSRAYGLAVSKSKVKNSIKVLSQLLVGVSEELILHETYAKEWEIDLSTNY
IRPATKNYTDFLYDVSSKLSSVEIMFAMTPCMRLYSWIGKNLSDMIINNP
YKEWILTYSDESFDNLAKSLEKIIDNYQEPYDINQAQNLYKKAMELELDF
FNAYSNF
>PMM0313 conserved hypothetical protein
MQCPTCQNTDSRVLESRSADTGKSVRRRRECLNCSFRFTTYERVETMPIS
VIKKDGSRELFNKDKLVTGISRACEKTTFSRESIINFVDSIESQIVQDSN
KDIKSSQIGELILKGLRKENEVAYIRYASVYRKFNGVKDFVSTLESLKGS
SKNELASIL
>PMM1629 Type II alternative RNA polymerase sigma factor, sigma-70 family
MSPETLVENKLATISSLKSSNDVDLVRSYLRDIGRVPLLSHEQEITLGRQ
VQEYMQVERAEIEIMELTDNKPSPEELAEKLNLSTSQIKKRLRAGQRAKE
RMVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKF
STYAYWWIRQGITRAIAEKSRAIRLPIHITEMLNKLKKGQRELSQEMSRT
PTISELAKYVELPEDDVKDLMCKAGQPVSLETKVGDGEDTVLLDLLAGGE
DLPDEQIEMDCMRGDLHSLLHQLPDLQCRVLRMRYGMDGDEPMSLTGIGR
VLGISRDRVRNLERDGLRGLRRLSESVEAYFVS
>PMM1588 possible Conserved carboxylase domain
MPFENNQRITRRRSSAGPTPPKRPIGNNSDFNGRQNQGPRPTFLSLRDHG
KVFVADLPNLSDGQLAHISKEANEVLNSLEKRLSDIENDSGSTNSENDTL
IKASTKRDVTLRFIKSIEEEQDHRKNNPALRDAASESLPRTFLEVARHRL
PGATFDSLLREALEACAVDEKPKESEVIDEPKESVKIMDIPSSNANPSFV
VNID
>PMM1517 conserved hypothetical protein
MSFYYLREEMGLALNDILDGICSNNIENLRDDLAITWINYKSENNQLNKG
FGCGINNTKLIYPASIVKLVYGLAAYSWIDTKKILFTQEISDAVNKMLFY
SSNDATSFLIDIITGTTSGPCIEGDSWENWKYQRSIINDWLKELNWSELN
EINCCQKTWDDGPFGREKEFYGTENNNRNMMTTDSTARILEEIMIKLDYQ
KDNLNLRSFLKRNLDKKVLNMDPLNQVNGFLGEGLPENTNFWSKAGLMSQ
ARHDAAWWVNNDSLQTLLVIFGNGEKYLKDETIFPQIAKAVYKYNNNFA
>PMM0562 possible acetyltransferase
MIFRNKRSSIKKTNILSQDELIKHYGINSYEFTHQEKKEIFVCSKVKEFD
LIELDQLLQTVGWSRRPIRRVKRALEFSILVVGLWRHDEKFPRLVGFARC
TGDGIIEATIWDVAINPVYQGLGLGKELMKYILQELKKIGISKVTLFADA
EVVSFYKRQGWELEPKGSKCAFWYAN
>PMM1637 possible transcriptional regulator
MRFHIQQEIDIPASTQLYNQICFAIAARYYPPGHRLPSTRQLAMQTGLHR
NTISKVYRQLETDGVVEAIAGSGIYVRDNLKKSFNSKNNLNTTPALETKK
AVDKLIKLGCTLQETRNLLTNEIDWRIKCGSRIIVSTPREDIGASMLIAE
DLSPNINVPVEVIPMEELEKVLCNSNNGTIVTSRYFLQPLEKLAKQYRVR
AIAVDLSDFQKELKIIKELKPGSCVGIVSISPGLLRAAEIIIHSMRGSDI
VIMTTISDNSNRLLALLKASNHIVCDGPSLSVIENTLLKNRSQLMRVPQI
ICAKNYLSIKTINHLKTEIGVIN
>PMM0839 Transcriptional-repair coupling factor
MSLNSLISYISNSQIIIELVKRIKHNNELNIIGSSRYAKSIIINSIANKE
NKDILLISPNEEIAYKWYGYFDSIDNRNVLYYPPSENLPYASINRSKETE
YSQLSVISKIIKKERKELNIIITTERSLQPHLIKINQFKENIFTLIKGNE
LDIKELTKKLVLLGYNKENLTSQEGSWSRRGEIIDIYPVNNELPVRIEYF
DNIIDKIREYDPVSQRTLDSVNKVEIVQVGFNLLIRKSLENLSEQGTFNS
EEITTKNNLDRYLGVIEEHPSNLLDYINKETLIVIDEKEECNKFSNNWCL
ESDNNFELHKDEIANNLKSNNINIKVKSNLHEKFESIIKTFSNYNVINLY
EFESKRNLDNRFLLSDKRINTSSKHIGKLSKEINKFILNKDKVWILSAQP
LRTKSLFFEHECNTTYLDKPNDLESAHKLIENSTPVIIKNKNNYEIEGFY
LPIWKVILITDKELFSQQALFNNVFIRKRKRSVNSNINVNKINPGDYIVH
KNHGIGQFLKIEKINITGESRDYLVIRYLDGKISVAADQLGSINRYRSSG
KIKPRINKLGGTEWLKIKDKNRKIIKKVALDILKLYAKREKLKGHIFPED
GPWQKELEESFPYQATPDQITAVKEVKIDMESDKPMDRLVCGDVGFGKTE
VAVRAIFKAITSGKQVILLAPTTILAQQHWRTFYNRFSPYPIKVSLLNRF
KTNTEKKDIYNGLKNNKIDLVVATHQILGKEIEIKNLGLLVIDEEQRFGV
RQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSI
KTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVNKLKNMFKDL
KYIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPRVNTIVIE
DSHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNINKINEASKQRLKAIKDF
SELGSGYQLAMKDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEI
NGQEVPEVNDTQVDLPINAFIPGTWILNREEKLDAYKYATECTNHKELTE
LATDWTNRYGVLPKPVESLILLMKLKLLAKKCGFNKIKLKKPNVIIETRL
KNSTFKLIKKGLPSNIQSKFNYEEDDQFSKIIIRGLGVTDIQNQIDQLIY
WLGLFVKEINNFDKETSVTKI
>PMM1101 putative ATP-dependent RNA helicase
MASNKDNQLVEKNDDNLGVENISNNPSIQSEQKLEVTEDEISFKEEDLDN
GFACFGFNKLILNSLESKGYKTPTPIQKAAIPELMLGRDLLGQAQTGTGK
TAAFALPLIEKLENNKESNAKVLVMTPTRELATQVADSFKSYSAESTNLR
TLAIYGGTDFRNQISSLKRKTDIVVGTPGRIMDHIRQGTFKINNISCLVL
DEADEMLKMGFLEDIEWIIDKLPENKQMVLFSATMPNEIRNIAKKYLNEP
AEILIKSVKQETQLITQKYINVQRHHKLDALKRILEITNEGVIIFVRTKL
LTTSIAEALENSGHSVAVLNGDIPQNQRENTVDRLKKGFIDILVATDVAA
RGLDVERIKLVINYDFPFDKETYTHRIGRTGRAGRSGEAILFVNQREKHF
LRNLENSTRNKIEEIEIPNNKIINEKRMGKLITNLNESSLDQENNEEKKA
LMIDILDTLREKHSMEDSNIAMAAINLAIGNKSFFINEDESWLYRQNNSD
RNRSNRNGNNRMRNTNRRNNYQNDSFETYKFNFGKMDRVRVANIISSICT
STNINGRLIGKIQIFNEYSLVDLPRDLHGEVKNKLKNLRIRN
>PMM1289 Type II alternative RNA polymerase sigma factor, sigma-70 family
MAASATTSTEPQKRRGNDPISWYLSNIGRVPLLTPAEEIELGNQVQKMMV
LTEDGQLNEKTKEFTPQDKRTIKIGRRAKERMMKANLRLVVSVAKKYQGK
GLELLDLVQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQS
RTIRLPVHLSERLATIRKISRELAHKLGAMPSRIEIAEAMEIDVEELDSV
LRQALSTSSLDAPVNGDDGRSFLGDLIADSNNEEPLDQVEQKMHQEQLGK
WLSHLSEQEQHVLKLRFGLDGNERHTLAEIGRLLEVSRERVRQVELKALR
KLRNLTRKLPSGI
>PMM1697 Type II alternative RNA polymerase sigma factor, sigma-70 family
MGILLESGNSSSKKKTEEPRLPNTAGKTRKTKPSLTAKQNQKKSARLASD
SIGYYLSSIGRVPLLTAAEEIELAHHVQNMKKMLEIPEIERSSKHLRLIK
IGKRARDRMMSANLRLVVSVAKKYQNQGLDLLDLVQEGAIGLERAVDKFD
PAMGYKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRVSREL
SQKSGRQPTRLEMATAMGIEQKDLEDLISQSAPCASLDAHARGEEDRSTL
GELIPDPNGEEPMEGMDRTIQKEHLGTWLTQLNEREQKIMKLRFGLDGEE
PLTLAEIGRQINVSRERVRQLEAKAILKLRVMTTHQKAA
>PMM0466 possible secreted protein MPB70 precursor
MDITSIKSVLHDLSEEVLPSRFETAQQPEPNIIQFCLRGINNQTWIEVSW
DSDSPRILTINRPEKIGTESTLSKQLRYGLKYMALVTIEQDKFERVIKFG
FAKKPGDEIKKYLVFELMGKHSNIFYLDNNQKIIAVGKQIKSNQSSFRVV
STGSIYSEPPSNMKKEPSPNESYEEWKESISSVPESLKYCLINTYQGVSP
ILTKQLETFSNLESVEIMNKNIDFISETNLKKIYQSWKIWIERFNKNNFN
FSIFGNFFYSVWFLKNEIINKDNIDQIDGLENYYNFHLKQKKIEALIKKI
DGIIFKQTNLEKKNFKLQSDLLINSENYQLYKEKADKIFMTHEIQKQDII
KGQKLYKKSKKLKRAQNLIKERMNIYKNKLDRLEEFSALLDNLNSLKNEN
PTTRVNLLEEIKAEICREFNLRIKNIREQTKDASGLESSPIEINTPKGLT
VQIGRNMRQNDLISFKFSKKGDLWFHAQESPGSHVVLKSSSQIPSDEDIQ
ISADLAALFSKAKMNIKVPISLVNIKDLQKITKGGPGCVSFNNVEILWGN
PTRGKDYIKKNLKKAI
>PMM0714 Bacterial regulatory proteins, ArsR family
MLLMKSFFLSYNNNNLITLKLLKESSKVKKENISKLIVSFSDPFRLEIID
LMMDGEVCVCDIMKLTNLSQSRISYHIKILKEAGVITDRQEGRWVYYSLN
KESLFLIKEWITSLTDYSSTRIRCCN
>PMM1262 lexA, SOS function regulatory protein, LexA repressor
MPPSIDNDLTAAQNELFNWIKNYMRDFQHSPSIRQMMKAMGLKSPAPVQS
RLRHLQDKGYISWQEGKARTMQIVDEIFEGVPIMGSVAAGGLIETFSDLQ
ENLDVSEIFRKKDVFALTVNGDSMIDACIADGDMVLMEPIKDSFSLRNGT
IVSALVPGLGTTLKYFFKRNGKIYLEAANPAYDPIELNLNEVTFQGKLLA
VWRSVRN
>PMM1492 nusA, N utilization substance protein A
MALVILPGLNNLIEDISEEKKLPPHVVELALREALLKGYEKYRKTFYIGV
KEDPFDEEYFSNFDVGFDLDEEGYRILSSKIIVENVESEDHQISLQEVKQ
VADDAQIGDTVVLDVTPEKEDFGRMAASTTKQVLAQKLRDQQRKMIQEEF
ADLEDPVLTARVIRFERQSVIMGVSSGIGRPEVEAELPKRDQLPNDNYRA
NATFKVFLKEVSEVARKGPQLFVSRANAGLVVYLFENEVPEIQEGTVKIV
AVSREANPPSRAVGPRTKVAVDSIEREVDPVGACIGARGARIQQVVNELR
GEKIDVIKWSSDPIQYILNSLSPAKVDLVRLVDPEGQHAHVLVPPDQLSL
AIGREGQNVRLAARLTGWKIDVKNSYEYDQETEDSAVAELIVQREEEENL
QREAEQRLEAEQAERAAEDKRLRELYPLPEDDEEYGDELYEEETRSENDQ
TENLKQEELLSKEENTR
>PMM0009 nusB, Antitermination protein NusB
MMHNRSLSRELSLLSLGLIKDTADLELNKIQIDEIFESALDSLINHCRDE
LDNCEADLENVSQHILDSELKEGSNSSFANVRDELKKAFYKMESVMNSLS
VTLDFPKLIVSSNQIDIREDVNHRILSIINNLKSIDSEIDEVMDRWRLKR
LPRVDRDILRLAYVDIHFLDTPVAVACDEAVNLANKYCDTQGRKMINGVL
RRLQRVKVN
>PMM0205 nusG, transcription antitermination protein, NusG
MSNELTTNLSSQKANTSIARWYAVQVASSCEKKVKATLEQRSVTLGVNNR
IIEIEIPQTPGIKLKKDGSRQTTEEKVFPGYVLVRMILDEDTMMAVKSTP
NVINFVGAEDGRGSGRSRGHIKPRPLSRQEVNRIFKRASEKKAVIKLDLE
EKDRIIVTSGPFKDFQGEVIEVSGERNKLKALLSIFGRETPVELEFSQIN
KQN
>PMM0461 petA, Cytochrome f
MINFKKQIMKKTTFFLCKLLLISSIVIFPRSSFAYPFWAQQNYESPREAT
GKIVCANCHLAQMPTIAEVPQSVGADSVFKAVVKIPYKDDIKEIGADGSA
VPLQVGAVVMLPDGFKLAPQERWTDEIKEETEGVYFTNYSEEKDNIILVG
PLPGDTNKEIVFPVLSPNPATNKEYHYGKYSLHIGGNRGRGQVYPTGEKS
NNVIFTSSSAGTINSIETIEDGSYQINIENENGDIVTEAVPVGPKLIVKE
QDQISAGDPLTNDPNVGGFGQLDAEVVLQSPYRIIGLIAFFIGVGLTQIL
LVLKKKQVEKVQAAEGV
>PMM0705 phoB, two-component response regulator, phosphate
MAAKEHKSLQGSKILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDF
ILGEGIKDFDLILLDLMLPGLNGLELCRKIRNEELYTPILILSAKGNESD
RVLGLEVGADDYLTKPFGISELIARCRALLRRSKRGKEKKQKIETIIEYK
NIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRDLILEKIWA
IDFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRFG
>PMM0147 rbcR, putative Rubisco transcriptional regulator
MPELPFTLDQLRILKAIAAQGSFKKAADLLYVTQPAVSLQIQNLEKQLEI
TIFDRGGRKALLTEGGKLLLEYCERILNQCDEACKAIEDLNSLKGGTLII
GASQTTGTYLMPRMIGLFRQKYPDVSVQLQVHSTRRTGWSVANGQIDLAI
IGGQLPSDLENLLQVIPYATDELALVLPPKHPLANKKELMKEDLYKLNFV
TLDSQSTTRKVVDKLLKDSGLDIQRLKIEMELNSLEAIKNAVQSGLGVSF
LPVVSIERELTGGSIHKPHLADLEVKRELKLITNPSRYTSRASEVFKKYI
LPQFASSESPLRQVNSI
>PMM0756 recG, ATP-dependent DNA helicase recG
MTNNEEYINLIKDWIRPLQKALTLESENRFTNLLGKKQYFNDYLNKSLSN
LNNLKLTNEFIKLFGEFSSKYSEYNDLDIKQRKRLVIDTRKGLLKLGKSI
NLNYSNKYTDSYYSKNIDSNLSLNSDIGLIKSIGKINKNKLNELGIYCIK
DIINYFPRTYLDYTNRVKIINLKPDNLYTCIATVKKFYIYKSSNNSNLSI
MNIVIFDETSSIKVTKFFLGKRFRSYSFFSSQKSLYIPGTKLAISGKVKL
SEYGKNFVDPQIEILNTNEESFNFSGKIMPLYSLSESFSNLSFIRLIKRV
IIYSKQYPDILNQKQLNFLSLVSKSDSLINIHLPVNQNALIESKKRLVFD
ELFLLQMKFLLRKRKNNKKLTIQKSIKKNFLLKDFLNKVPFQLTKSQEKV
LDEIKSDLSDLTPMSRLLQGDVGSGKTIIAIATLLIELEKDQQGALMVPT
EVLATQHYKNLIQFLNPLLVSVELLTGNTPQKKRKEILTNLKNGMVDILV
GTHALFEDKVVFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLSMTATP
IPRTLALSLYGDLDISQITELPPGRVPITTKIISEEELNKLFKRVENEID
KGKQAYVILPLIEDSEKMNLSSAKKIYQYLSEEIFLKNKVGLLHGKLNSE
EKNNVINSFVNNEVNILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQ
LRGRVGRGSQKSFCYLVTSENNGLENKRLRVLEKSNDGFYIAEKDLELRG
PGQLLGYKQSGLPDFVLDNLPNNKVLIEKAREEAQRVLKEDPDLRENILL
KDLLIDNSNNKFIHDFLN
>PMM0333 rimI, GCN5-related N-acetyltransferase
MKKNFSIRLISNDEIQKVTDWARLEGFAPGFDDISIYKNTDKKGIWVGCL
DNDPIGSIACVKYNSSYGFIGLFIVKKEFRNMGYGVRLWKHALDYLKNVG
CIGLEAAPNRLDDYQTWGFTKSSITNRWKLEGIQDLPNGNFYKDDNTFSV
VPGNQIPPEAVLIYDSQREPSPRPHFLNDWLKNSFGNVSALVDNNGMCHG
FGRIRPCMLQDNNKGWRIGPLLADTPPLAELLIRKLVKNLEAQILLDCSN
LNPYANYLLSSMGFKEISQTYRMYKGIQPSCPMNQVYGLACLELG
>PMM1603 rnc, putative ribonuclease III
MDTLIDDKRLEQIIKFLNSLEINSKRFIKIINEKDKLILHTFNEALTHSS
ANNIVNYEKLEFFGDAVLRLSASDFIERTYKSMSVGSRSELRSQIVSDEW
LTELGKKIFIEKVIIKGPKAMGDENSKDTIIAETSEALIGAIYKCFNSIN
EVNIWLDNFWKKDAELYLQAPHKYNAKSALQEWCQSQGFDLPIYKIYEVS
KNHGDPKRFSCEIYINGSKKAFSFGHSHKKAEKNAASILIQKIFQKKKN
>PMM0128 rpaA, two-component response regulator
MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLI
LLDLMLPSVDGLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGAD
DYITKPFDLEELYVRIKALLRRTNRAQLNSTNQQEILNYGPLTLVPERFE
AIWFESAVRLTHLEFELLHCLMQRHGQTVSPALILKEVWGYEPDDDIETI
RVHVRHLRTKLEPEPRKPKYIKTVYGAGYCLELPAVAQVDNGMQEFAEST
N
>PMM0134 rpaB, two-component response regulator
MAVSSQTKETILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKD
YDPDLVVLDVMMPKLDGYGVCQELRKDSDVPIVMLTALGDVADRITGLEL
GADDYVVKPFSPKELEARIRCVLRRIDKEQLPGMPNSGLILVTDIKIDTN
RRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHV
DTRVVDVHISRLRSKLEADPANPELILTARGTGYLFQRIVDISPFDGK
>PMM1535 rpoA, Bacterial RNA polymerase, alpha chain
MLQYQIDRIDHQISDDRSQTGTFLIGPLERGQATTLGNSLRRVLMGGLEG
SAVTAVRISGINHEYATIPGVREDVLDILLNCKQLSINSSNPETEIGRLV
VNGPMEVKANDIQFSSQVEIVDGEKPIATIQEGHNLELEIHVERGVGYRP
VDRRNQETTAIDLLQIDAVFMPVKRVNFTIDETAVAEGATGRERLTMEVV
TDGSTSPDDAIAEAANQLIELFQPLATVTMVEEIPEEPEPSPEAQIPLEE
LNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER
IGISIPQSRTSV
>PMM1485 rpoB, RNA polymerase beta subunit
MSSSALQIAKTATYLPDLVEVQRASFKWFLEKGLIEELKSFSPITDYTGK
LELHFVGEEYRLKRPRHDVEEAKRRDATFASQMYVTCRLINKETGEIKEQ
EVFIGELPLMTERGTFIINGAERVIVNQIVRSPGVYFKDEMDKNGRRTYN
ASVIPNRGAWLKFETDKNNLLYVRVDKTRKINAHVLMRAMGLSDNDVVDK
LRHPEFYKQSIDSANDEGINSEDQALLELYKKLRPGEPPSVSGGQQLLHS
RFFDPKRYDLGRVGRYKINKKLRLTVPNEVRTLTHEDVLSTIDYLINLEL
DIGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETD
SLTPAQLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP
GGLTRERAGFAVRDIHPSHYGRLCPIETPEGPNAGLINSLATHARVNEYG
FIETPFWEVEKGRVMKEGNPVYLSADLEDECRVAPGDVATDKSGNILADL
IPVRYRQDFEKVPPHQVDYVQLSPVQVISVATSLIPFLEHDDANRALMGS
NMQRQAVPLLRPERPLVGTGLESQVARDSGMVPITKVNGIVSYVDANEIV
VKDVDGNEHVHFLQKYQRSNQDTCLNQRPIVKNGDQVISGQVLADGSACE
GGEIALGQNVLIAYMPWEGYNYEDAILVSERMVTDDLYTSVHIEKYEIEA
RQTKLGPEEITREIPNISEESLNNLDEMGIIRTGAFVESGDILVGKVTPK
GESDQPPEEKLLRAIFGEKARDVRDNSLRVPKTEKGRVLDVRIYTREQGD
ELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRILPREDMPYLPD
GTPVDIVLNPLGVPSRMNVGQVFELLMGWAASNLNCRVKVVPFDEMYGAE
KSHQTVQAFLEEASKQDGKDWVYNPKDPGKLLLKDGRTGEPFDQPVAVGY
SHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALE
AYGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPRPGTPESFKVLMRE
LQSLGLDIGVYTDEGKEVDLMQDVNPKRNTPSRPTYESLGTSEYAED
>PMM1484 rpoC1, RNA polymerase gamma subunit
MTNSNLRTENHFDYVKISIASPQRIMDWGQRTLPNGQVVGEVTKPETINY
RTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESR
VRRHRMGYIKLAAPVSHVWYLKGIPSYVAILLDIPLRDVEQIVYFNCYVV
LDVGDHKDLKYKQLLTEDEWLEIEDEVYAEDSTIENEPVVGIGAEALKQL
LEDLDLNQIAEELREEITNSKGQKRAKLIKRIRVIDNFLATNAKPEWMVL
DAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFR
QNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQN
IVNNIKAAKKLIQKGDDEVMQVLQEVIEGHPILLNRAPTLHRLGIQAFEP
KLVGGRAIQLHPLVCPAFNADFDGDQMAVHVPLALEAQTEARMLMLASNN
ILSPATGEPIVTPSQDMVLGSYYLTALQPNFKKPNFGDNQKTYASLEDVI
FAFEDKRVGLHEWVWVRFNGEVDDDEEANKPKESKELEDGSRLETWNFRR
DRFDSQNNLISRFILTTVGRVVMNHTIIDSVSKT
>PMM1483 rpoC2, RNA polymerase beta prime subunit
MTSSKPKKSSRVRKTTKNSKKNHNTMMPLLPKTPPSFKNKVVDKKALKNL
VSWAYKTHGTAVTAAMADNLKDLGFKYATQAAVSISVNDLKVPEAKQDLI
GQAEAQITATEECYRLGEITEVERHTKVIDTWTETNERLVDAVKNNFNQN
DPLNSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIIDLPIRTNFREG
LTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREEDCGT
ERSIVINSEDGKFGSRLIGRLSAEDILDSEGNLIVPKNTAIDPSLSKTLE
TSLISKVNIRSPLTCEANRSVCRKCYGWALAHNHLVDLGEAVGIIAAQSI
GEPGTQLTMRTFHTGGVSTAESGVVRSKIKGKVEFGSKAKIRGYRTPHGV
EAKQAEVDFLLKIIPTGSITNKAQKIEVTSGSLLFVEDGQDIDSDITVAQ
ITSGAVKKSVEKATKDVICDLAGEVRYDKVIQPKEVTDRQGNITLKAQRL
GRLWVLAGDVYNLPPNAKPVVSTETKVEQGTVLAEASQSSEFGGEVRLRE
SVGDSREVQIVTTSMLLSNFKLIEESTHSGELFHLESNDGTIYRLNTSPG
SKISSGEVIADLADERFRTKTGGLVKYAPGLSVKKARSSKNGFEVSQGGT
LLWIPQETHEINKDISLLMTEDMEWIEAGTEVVKDIFSQTSGIVTVTQKN
DILREITVRNGSFHECEDEEILSRFTEEGKLVNPGEKIIDGVDNDEILFV
QKLETSKGKGLLLRTVEEYTIPNEAELPELSHVKQEKGPSLALKAIQRLS
YKDGELIKSVEGVELLKTNLSIESFDATPQMTIDVETIQDKSDKSINRLN
LVILESILVRRDTISDSSHGSTHTELQINNNQLVKAGDVIATTQILCKER
GVLQLPDSVEGEPIRRLIVERNEDKIKINIKDKAVVKTGDRVVDGDLISK
GVKSTSCGEIEEVSSEYVILRIGRPYMVSPDSVLHVKDGDLVLRGDGLAL
LVFERQKTGDIVQGLPRIEELLEARRPRDSSILCKKSGVVQIKEGTDEES
VSLSVIERDDSISEYQLLMGQNIMVSDGQQVTGGELLTDGPINPHDLLDC
LFTDLKDQKPLMEAAQESISKLQRKMVNEVQNVYKSQGVAISDKHIEVIV
RQMTSKVRIEDAGDTTLLPGELIELRQVEDTNQAMSITGGAPAEFTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLI
PAGTGFSGFVEELASEAGPHPDILAEESGGYRRTQNLRPDYTVDMPQTPI
VSSTAILDDPSDEDLETTRNRHGIDPTSSNFAAFARPNAENQFSEDQLPD
PAALEGLQEEGLLSDG
>PMM0496 sigA, rpoD, Putative principal RNA polymerase sigma factor
MCPAATESKSSNPSSKKKINKKIDSNFKNDREEESIKYQDPIQNSKQKPL
NDEGSIENKDEFNGSDEEAKAIGNVKLGPKGIYTEDSIRVYLQEIGRIRL
LRPDEEIELARKIADLLQLEELATQYESEKGHFPSVREWAELTDMPLSKF
RRRLLLGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRA
AEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK
TTKVLSQEFGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEE
DSRLGDFIEADIENPEQDVSKTLLREDLEGVLATLSPRERDVLRLRYGID
DGRMKTLEEIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK
>PMM0191 spoT, guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase
MAEATANSKEKNEIKVSTIILPENKNYESESLKYEINIPNWLLEIIQNYE
VSNKKNNSNQDLIVKAFKLAYEAHNGQLRASGEPYIIHPLAVADLLKEIG
ASSSVVAAGLLHDVVEDTGIALSEIEVNFGLEVKVLVEGVTKLGGIHFNN
RTEAQAENLRKMFLAMASDIRVVLVKLADRLHNMRTIQWLNEERKERIAR
ETREIYAPLANRLGINRFKWELEDLAFKFLEPEEYKNLKDQIAVKRSDRE
KRLNVTLNLMKENLVSSGLVNFEITGRPKHLYGIWSKMERQQKQFGEIYD
VAALRIIVSNTDSCYKALAVVHDTFRPIPGRFKDYIGLPKPNGYQSLHTS
VIGRHRPIEVQIRTSSMHQIAEFGIAAHWQYKEGGSPASSNAERFNWLRQ
LVEWQQEGNEKDHNDYLASIKEDLFDEEVFVITPKGDVVGLRKGSTAIDF
AYRIHSEIGNHCNGIRINEKLSPLSTSLQNGDFIEILTNTNSTPSLDWLN
FVVTPTAKNRIRQWYKKSHRDETIKRGKDLLEKEIGRNGFESLISSDAMK
KVAHRCNLKSTEDLLASLGFGGLTLHQVLNRLREEIKIQTEEIKNESNEE
LARSLINKNNSIATKSHATNKSPITGVEGLDYRIGKCCSPLPGEEIIGTV
SLGNHGITIHRRDCENVIPIPIERRLPVAWNQENKILDNKFPIQLRIEVI
DRVGVLKDILMRLSDKGINVSDANVKTAFGKPAIINLCVGLESYSQLHKT
IDQIKSMADVLDIARVGIS
>PMM0969 ureG, urease accessory protein UreG
MSSKLRVGVAGPVGSGKTALVETLCIALKKRYKIAVVTNDIYTKEDANFL
IKKKILEEGRIVGVETGGCPHTAIREDCSLNKNAVMDLENKYDPLDFIFV
ESGGDNLAASFSPELVDLSIYVIDVSAGDKIPRKGGPGITRSDLLLINKI
DLADMVGANLNIMQNDTNMMRDGKPWFFTNLSSGSGVDNVIKYLVAQIPN
I
>PMM0847 zam, putative acetazolamide conferring resistance protein Zam
MFSTSSIIENLNQEEGLEYKKLCRLLNLSKKTDKAKLDIALRALEELEII
NKNKDNEYFNVKESNHLVAKIRCSSKGYCFAVRENNNEDIYIKENLLNYA
WNGDKVLVRIIKDGVRRRSPEGVVDCILERTNQILLAKVEIIKDEVYGIP
IDDRILAKIKLPKKDEKYKYNPINKNIVKIEIDLFPIAQQEGNGHVIKEL
TLNNNEKLDTDFVLSKSNIHRIANVQNPKLTVSNQQQRLDLSSKNSYMFK
SWETENSPILPIFQIDKIKNNSYKLWIHTNTIAERLDLINKKSLQIFFDR
FESFPLLEKWQNYLSDEICNAAKFNINEINDAISLCIEMNSENEIINWSF
HLTKVKCSLLVENQHIDALLTRKSKARITSRILKPIKDYIEDLDKIIEIS
NEFRKNQLLDGKIELPKSNNNIESLKEILVHNPAEFSKEYFEPLNNNDIQ
TYLSPLLYEANSIWFNHSNNYGLNNASYISQELDYINVTEIIKNSELIDS
NIELNDNGTLSFKKLVELCTDDNKKRILHKILFNVVRDNEVTLISNDNTI
DDSKNIISPWTLPSFDFTNLMNQYNIYNMIINGKRNKSSGGNLINIMEKE
SWENVTWRLYNSSTLKSLDLLFNSVMIDKINEYKNKVRQFKSNMITIKKV
RKAEKFIGNKYSGLIMAVQSYGFFVEIPELYVEGLVHVSTLSNDWYEYRS
RQNLLIGRKSKNSYKIGDVIDIKIIKVDILKYQIDLEIV