Gene list
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COG category: Transcription
Organism: Synechococcus sp. WH 8102, WH8102
Number of genes found: 81
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| Synechococcus sp. WH 8102, WH8102 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SYNW1186 | hypothetical | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 1177744 | 1317 | - | 0.582384 |
| NA | SYNW1044 | putative SOS mutagenesis protein UmuD | SubName: Full=Putative SOS mutagenesis protein UmuD; EC=3.4.21.-; | chromosome | CDS | 1039831 | 432 | - | 0.671296 |
| NA | SYNW2163 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 2056539 | 762 | - | 0.645669 |
| NA | SYNW0643 | hypothetical | SubName: Full=Uncharacterized protein; | chromosome | CDS | 628255 | 1161 | + | 0.416021 |
| NA | SYNW0599 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 582006 | 279 | - | 0.62724 |
| NA | SYNW1660 | possible transcription regulator | SubName: Full=Possible transcription regulator; | chromosome | CDS | 1597273 | 144 | - | 0.5 |
| NA | SYNW1984 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 1891003 | 483 | + | 0.573499 |
| NA | SYNW2496 | Type II alternative RNA polymerase sigma factor, sigma-70 family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2399426 | 987 | + | 0.598784 |
| NA | SYNW0623 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 607974 | 393 | + | 0.559796 |
| NA | SYNW1540 | possible acetyltransferase | SubName: Full=Possible acetyltransferase; | chromosome | CDS | 1483524 | 504 | - | 0.654762 |
| NA | SYNW0273 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 272679 | 441 | - | 0.632653 |
| NA | SYNW1509 | Possible type II alternative RNA polymerase sigma factor | SubName: Full=Possible type II alternative RNA polymerase sigma factor; | chromosome | CDS | 1459208 | 927 | + | 0.582524 |
| NA | SYNW1665 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1605378 | 141 | + | 0.439716 |
| NA | SYNW0102 | Type II alternative RNA polymerase sigma factor, sigma-70 family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 102314 | 999 | + | 0.588589 |
| NA | SYNW0317 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 314117 | 696 | - | 0.668103 |
| NA | SYNW0126 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 123900 | 762 | + | 0.594488 |
| NA | SYNW1875 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 1790965 | 627 | + | 0.547049 |
| NA | SYNW1314 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 1309296 | 1089 | - | 0.641873 |
| NA | SYNW0987 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 983554 | 2019 | - | 0.657256 |
| NA | SYNW1621 | Type II alternative RNA polymerase sigma factor, sigma-70 family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1560024 | 942 | - | 0.579618 |
| NA | SYNW1423 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1392604 | 672 | - | 0.627976 |
| NA | SYNW2427 | Possible type II alternative RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2331535 | 1404 | + | 0.626068 |
| NA | SYNW1879 | similar to chloroplast membrane-associated 30 kD protein | SubName: Full=Similar to chloroplast membrane-associated 30 kD protein; | chromosome | CDS | 1794045 | 792 | - | 0.623737 |
| NA | SYNW0977 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 968928 | 306 | + | 0.598039 |
| NA | SYNW2362 | SNF2 helicase homolog | SubName: Full=SNF2 helicase homolog; | chromosome | CDS | 2267944 | 3192 | + | 0.649436 |
| NA | SYNW1069 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 1058476 | 297 | - | 0.602694 |
| NA | SYNW1164 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 1157952 | 717 | - | 0.576011 |
| NA | SYNW0091 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 92554 | 1002 | - | 0.642715 |
| NA | SYNW0039 | possible helicase | SubName: Full=Possible helicase; | chromosome | CDS | 37349 | 1620 | + | 0.642593 |
| NA | SYNW0920 | probable ATP-dependent RNA helicase DeaD | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; Flags: Precursor; | chromosome | CDS | 880771 | 1797 | + | 0.629939 |
| NA | SYNW1838 | similar to secreted protein MPB70 precursor | SubName: Full=Similar to secreted protein MPB70; | chromosome | CDS | 1754876 | 1758 | + | 0.65529 |
| NA | SYNW1232 | Possible type 3 alternative RNA polymerase sigma factor | SubName: Full=Possible type 3 alternative RNA polymerase sigma factor; | chromosome | CDS | 1225446 | 678 | - | 0.551622 |
| NA | SYNW0464 | hypothetical | SubName: Full=Uncharacterized protein; | chromosome | CDS | 468796 | 225 | + | 0.568889 |
| NA | SYNW0010 | NusB family protein | SubName: Full=NusB family protein; | chromosome | CDS | 11766 | 636 | + | 0.597484 |
| NA | SYNW1973 | possible transcriptional regulator, luxR family | SubName: Full=Possible transcriptional regulator, luxR family; | chromosome | CDS | 1883957 | 210 | + | 0.628571 |
| NA | SYNW0798 | Putative transcriptional regulator, ArsR family | SubName: Full=Putative transcriptional regulator, ArsR family; | chromosome | CDS | 774974 | 315 | - | 0.615873 |
| NA | SYNW0566 | possible two-component response regulator | SubName: Full=Possible two-component response regulator; Flags: Precursor; | chromosome | CDS | 555356 | 705 | - | 0.673759 |
| NA | SYNW2105 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1988419 | 144 | + | 0.527778 |
| NA | SYNW0689 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 672895 | 1455 | - | 0.64055 |
| NA | SYNW0808 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 781965 | 726 | - | 0.625344 |
| NA | SYNW0012 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 13895 | 1422 | + | 0.604079 |
| NA | SYNW2059 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 1955929 | 1446 | + | 0.663209 |
| NA | SYNW0080 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 79065 | 540 | - | 0.651852 |
| NA | SYNW0904 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 866065 | 768 | - | 0.653646 |
| NA | SYNW2370 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2278819 | 354 | - | 0.59322 |
| NA | SYNW0732 | conserved hypothetical | SubName: Full=Conserved hypothetical; | chromosome | CDS | 716706 | 246 | + | 0.585366 |
| NA | SYNW0964 | possible LytR-membrane bound transcriptional regulator | SubName: Full=Possible LytR-membrane bound transcriptional regulator; | chromosome | CDS | 957986 | 960 | + | 0.645833 |
| NA | SYNW1224 | probable ribonuclease II | SubName: Full=Probable ribonuclease II; EC=3.1.13.1; | chromosome | CDS | 1214922 | 2049 | - | 0.629575 |
| NA | SYNW2268 | possible transcriptional regulator | SubName: Full=Possible transcriptional regulator; | chromosome | CDS | 2166669 | 276 | + | 0.550725 |
| NA | SYNW1385 | possible DNA-binding response regulator | SubName: Full=Possible DNA-binding response regulator; | chromosome | CDS | 1365205 | 708 | - | 0.644068 |
| NA | SYNW1582 | SOS function regulatory protein, LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 1524986 | 705 | - | 0.628369 |
| NA | SYNW1380 | possible DNA-binding response regulator | SubName: Full=Possible DNA-binding response regulator; | chromosome | CDS | 1361949 | 687 | - | 0.558952 |
| NA | SYNW1592 | Possible AraC-type regulatory protein | SubName: Full=Possible AraC-type regulatory protein; | chromosome | CDS | 1534773 | 645 | + | 0.617054 |
| NA | SYNW0926 | similar to membrane bound transcriptional regulator | SubName: Full=Similar to membrane bound transcriptional regulator; | chromosome | CDS | 887658 | 807 | + | 0.612144 |
| NA | SYNW2173 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 2066779 | 237 | + | 0.64557 |
| NA | SYNW1294 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 1292882 | 498 | + | 0.588353 |
| NA | SYNW2493 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2395276 | 468 | - | 0.643162 |
| NA | SYNW1177 | Transcriptional-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1167825 | 3579 | - | 0.621961 |
| NA | SYNW1598 | possible two-component response regulator or pseudogene | chromosome | CDS | 1540086 | 678 | - | 0.657817 | |
| NA | SYNW2289 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 2183797 | 738 | - | 0.638211 |
| NA | SYNW1487 | ROK family sugar kinase | SubName: Full=ROK family sugar kinase; | chromosome | CDS | 1437863 | 909 | - | 0.684268 |
| hrcA | SYNW2279 | putative heat-inducible transcriptional repressor HrcA | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 2175109 | 975 | + | 0.671795 |
| hypB | SYNW1414 | hydrogenase expression/formation protein HypB | SubName: Full=Hydrogenase expression/formation protein HypB; | chromosome | CDS | 1385592 | 735 | + | 0.651701 |
| nusA | SYNW0600 | N utilization substance protein A | SubName: Full=N utilization substance protein A; | chromosome | CDS | 582281 | 1428 | - | 0.621148 |
| nusG | SYNW2344 | transcription antitermination protein, NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2245424 | 669 | - | 0.620329 |
| phoB | SYNW0947 | two-component response regulator, phosphate | SubName: Full=Two-component response regulator, phosphate; | chromosome | CDS | 908407 | 708 | + | 0.600282 |
| rbcR | SYNW2260 | putative Rubisco transcriptional regulator | SubName: Full=Putative Rubisco transcriptional regulator; | chromosome | CDS | 2157511 | 975 | - | 0.620513 |
| recG | SYNW1093 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; | chromosome | CDS | 1079115 | 2511 | + | 0.635205 |
| rimI | SYNW1379 | putative ribosomal-protein-alanine acetyltransferase | SubName: Full=Putative ribosomal-protein-alanine acetyltransferase; EC=2.3.1.128; | chromosome | CDS | 1361047 | 891 | + | 0.579125 |
| rnc | SYNW0152 | putative ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 146671 | 717 | - | 0.62622 |
| rpaA | SYNW2236 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 2133642 | 789 | + | 0.604563 |
| rpaB | SYNW2246 | two-component response regulator | SubName: Full=Two-component response regulator; Flags: Precursor; | chromosome | CDS | 2146350 | 747 | + | 0.610442 |
| rpoA | SYNW2090 | RNA polymerase alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1975627 | 939 | + | 0.608094 |
| rpoB | SYNW0613 | DNA-directed RNA polymerase beta chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 592422 | 3294 | + | 0.61354 |
| rpoC1 | SYNW0614 | RNA polymerase gamma subunit | RecName: Full=DNA-directed RNA polymerase subunit gamma; Short=RNAP subunit gamma; EC=2.7.7.6; AltName: Full=RNA polymerase subunit gamma; AltName: Full=Transcriptase subunit gamma; | chromosome | CDS | 595766 | 1905 | + | 0.59685 |
| rpoC2 | SYNW0615 | RNA polymerase beta prime subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 597718 | 4095 | + | 0.605617 |
| rpoZ | SYNW0525 | putative DNA-directed RNA polymerase (omega chain) | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 521047 | 228 | + | 0.600877 |
| sigA, rpoD | SYNW1783 | Putative principal RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor SigA; | chromosome | CDS | 1712270 | 1416 | + | 0.592514 |
| spoT | SYNW2324 | guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase | SubName: Full=Guanosine-3,5-bis(Diphosphate) 3-diphosphatase, (PpGpp)ase; EC=3.1.7.2; | chromosome | CDS | 2225569 | 2331 | - | 0.621622 |
| ureG | SYNW2443 | urease accessory protein G | RecName: Full=Urease accessory protein UreG; | chromosome | CDS | 2348961 | 606 | - | 0.617162 |
| zam | SYNW1202 | putative acetazolamide conferring resistance protein Zam | SubName: Full=Putative acetazolamide conferring resistance protein Zam; | chromosome | CDS | 1191642 | 2355 | - | 0.607643 |
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