Gene list
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COG category: Transcription
Organism: Xylella fastidiosa 9a5c
Number of genes found: 111
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| Xylella fastidiosa 9a5c | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | XF1108 | transcriptional elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 1061812 | 465 | + | 0.513978 |
| NA | XF2511 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 2389733 | 771 | + | 0.496757 |
| NA | XF0767 | transcriptional regulator (ArsR family) | RecName: Full=Biofilm growth-associated repressor; | chromosome | CDS | 718907 | 345 | - | 0.553623 |
| NA | XF2534 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 2407544 | 678 | + | 0.542773 |
| NA | XF1350 | RNA polymerase sigma-70 factor | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 1296789 | 1857 | + | 0.469036 |
| NA | XF1786 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 1703470 | 222 | - | 0.617117 |
| NA | XF0322 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 338428 | 696 | + | 0.547414 |
| NA | XF2608 | transcriptional regulator (LuxR/UhpA family) | SubName: Full=Transcriptional regulator (LuxR/UhpA family); | chromosome | CDS | 2490561 | 663 | - | 0.464555 |
| NA | XF1408 | RNA polymerase sigma-54 factor | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 1358278 | 1389 | - | 0.535637 |
| NA | XF2352 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 2230084 | 204 | - | 0.480392 |
| NA | XF1645 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 1587790 | 948 | - | 0.560127 |
| NA | XF0240 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 252969 | 429 | - | 0.519814 |
| NA | XF0045 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 40005 | 3582 | + | 0.55081 |
| NA | XF1477 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1422706 | 462 | - | 0.58658 |
| NA | XF0234 | N utilization substance protein A | SubName: Full=N utilization substance protein A; | chromosome | CDS | 244362 | 1512 | + | 0.510582 |
| NA | XF0833 | transcriptional regulator (LysR family) | SubName: Full=Transcriptional regulator (LysR family); | chromosome | CDS | 785942 | 1032 | + | 0.564922 |
| NA | XF1254 | transcriptional regulator (AraC family) | SubName: Full=Transcriptional regulator (AraC family); | chromosome | CDS | 1210758 | 843 | + | 0.563464 |
| NA | XF2246 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 2136468 | 639 | + | 0.546166 |
| NA | XF1998 | DNA-binding protein | RecName: Full=Putative Fis-like DNA-binding protein; | chromosome | CDS | 1911707 | 273 | + | 0.505495 |
| NA | XF1414 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1363133 | 228 | + | 0.508772 |
| NA | XF1490 | transcriptional regulator (MarR/EmrR family) | SubName: Full=Transcriptional regulator (MarR/EmrR family); | chromosome | CDS | 1438362 | 480 | - | 0.472917 |
| NA | XF2127 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 2019346 | 1020 | + | 0.485294 |
| NA | XF1730 | transcriptional regulator (LysR family) | SubName: Full=Transcriptional regulator (LysR family); | chromosome | CDS | 1650033 | 891 | - | 0.709315 |
| NA | XF0044 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 39398 | 540 | + | 0.542593 |
| NA | XF1316 | ATP:GTP 3'-pyrophosphotranferase | SubName: Full=ATP:GTP 3-pyrophosphotranferase; | chromosome | CDS | 1266639 | 2157 | + | 0.54242 |
| NA | XF0216 | transcriptional regulator (MarR family) | SubName: Full=Transcriptional regulator (MarR family); | chromosome | CDS | 223451 | 507 | + | 0.433925 |
| NA | XF1132 | transcriptional regulator (LysR family) | SubName: Full=Transcriptional regulator (LysR family); | chromosome | CDS | 1092886 | 906 | - | 0.558499 |
| NA | XF2578 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 2456679 | 579 | + | 0.557858 |
| NA | XF1502 | RNA polymerase omega subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 1453924 | 300 | - | 0.503333 |
| NA | XF1176 | RNA polymerase alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1121803 | 999 | + | 0.445445 |
| NA | XF2696 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 2574884 | 1635 | - | 0.519878 |
| NA | XF2632 | RNA polymerase beta' subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2511584 | 4293 | - | 0.467738 |
| NA | XF2071 | conserved hypothetical protein | RecName: Full=Antitoxin ParD; | chromosome | CDS | 1969289 | 243 | - | 0.596708 |
| NA | XF2691 | RNA polymerase sigma-32 factor | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 2570566 | 882 | - | 0.477324 |
| NA | XF2239 | RNA polymerase sigma-H factor | SubName: Full=RNA polymerase sigma-H factor; | chromosome | CDS | 2130143 | 621 | + | 0.510467 |
| NA | XF1463 | transcriptional regulator (LacI family) | SubName: Full=Transcriptional regulator (LacI family); | chromosome | CDS | 1408836 | 984 | + | 0.546748 |
| NA | XF0122 | LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 118513 | 672 | + | 0.517857 |
| NA | XF1663 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 1599063 | 1146 | + | 0.541885 |
| NA | XF1966 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1875227 | 2523 | - | 0.579469 |
| NA | XF0744 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 698830 | 363 | + | 0.539945 |
| NA | XF1532 | oxidative stress transcriptional regulator | SubName: Full=Oxidative stress transcriptional regulator; | chromosome | CDS | 1490224 | 978 | + | 0.525562 |
| NA | XF2075 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1970472 | 279 | - | 0.577061 |
| NA | XF1928 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1832918 | 384 | + | 0.575521 |
| NA | XF0704 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 664858 | 633 | + | 0.562401 |
| NA | XF1996 | transcriptional regulator (PbsX family) | SubName: Full=Transcriptional regulator (PbsX family); | chromosome | CDS | 1910530 | 381 | + | 0.543307 |
| NA | XF2688 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2565485 | 966 | - | 0.544513 |
| NA | XF0680 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 650674 | 1419 | - | 0.570825 |
| NA | XF2758 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2646617 | 513 | + | 0.356725 |
| NA | XF1710 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1630176 | 333 | + | 0.540541 |
| NA | XF1617 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1556498 | 930 | - | 0.565591 |
| NA | XF0534 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 527619 | 345 | - | 0.504348 |
| NA | XF1722 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1642422 | 393 | - | 0.610687 |
| NA | XF0629 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 605696 | 711 | - | 0.535865 |
| NA | XF2763 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2655084 | 309 | - | 0.556634 |
| NA | XF1113 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 1068633 | 1161 | + | 0.529716 |
| NA | XF1090 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1045600 | 411 | - | 0.46472 |
| NA | XF2038 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 1941263 | 651 | - | 0.596006 |
| NA | XF0192 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 201673 | 1341 | + | 0.522744 |
| NA | XF2281 | chromosome partitioning protein | RecName: Full=Probable chromosome-partitioning protein ParB; | chromosome | CDS | 2170954 | 933 | - | 0.55627 |
| NA | XF0696 | phage-related repressor protein | SubName: Full=Phage-related repressor protein; | chromosome | CDS | 661716 | 666 | - | 0.506006 |
| NA | XF2342 | heat-inducible transcriptional repressor | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 2221578 | 1104 | - | 0.535326 |
| NA | XF1658 | phage-related repressor protein | SubName: Full=Phage-related repressor protein; | chromosome | CDS | 1596393 | 696 | - | 0.441092 |
| NA | XF2491 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2371871 | 402 | + | 0.524876 |
| NA | XF2593 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 2472975 | 801 | - | 0.518102 |
| NA | XF0298 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 315284 | 282 | - | 0.602837 |
| NA | XF1626 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 1566142 | 759 | + | 0.504611 |
| NA | XF2452 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2338597 | 984 | + | 0.530488 |
| NA | XF1719 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1640956 | 666 | - | 0.621622 |
| NA | XF0252 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 262848 | 1845 | - | 0.568022 |
| NA | XF2153 | conserved hypothetical protein | RecName: Full=3-deoxy-D-manno-octulosonic acid kinase; Short=Kdo kinase; EC=2.7.1.166; | chromosome | CDS | 2044119 | 780 | - | 0.537179 |
| NA | XF2622 | temperature acclimation protein B | SubName: Full=Temperature acclimation protein B; | chromosome | CDS | 2500290 | 258 | - | 0.457364 |
| NA | XF1596 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1540198 | 300 | - | 0.62 |
| NA | XF0354 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; | chromosome | CDS | 360636 | 2157 | + | 0.565137 |
| NA | XF0352 | pentaphosphate guanosine-3'-pyrophosphohydrolase | SubName: Full=Pentaphosphate guanosine-3-pyrophosphohydrolase; | chromosome | CDS | 357824 | 2208 | + | 0.517663 |
| NA | XF2699 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2577722 | 1236 | + | 0.498382 |
| NA | XF2110 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2006148 | 339 | - | 0.551622 |
| NA | XF0278 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 290340 | 660 | + | 0.557576 |
| NA | XF2336 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 2215260 | 726 | - | 0.530303 |
| NA | XF1920 | Trp operon transcriptional repressor | RecName: Full=Trp operon repressor homolog; | chromosome | CDS | 1825482 | 279 | - | 0.344086 |
| NA | XF1702 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1624326 | 306 | - | 0.464052 |
| NA | XF2041 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1943886 | 762 | - | 0.519685 |
| NA | XF2228 | transcriptional regulator | RecName: Full=UPF0301 protein XF_2228; | chromosome | CDS | 2115745 | 567 | - | 0.550265 |
| NA | XF1630 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1569505 | 1050 | + | 0.500952 |
| NA | XF1784 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1701566 | 762 | - | 0.658793 |
| NA | XF0882 | ATP-dependent helicase | SubName: Full=ATP-dependent helicase; | chromosome | CDS | 839676 | 2127 | - | 0.590973 |
| NA | XF0684 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 655043 | 1512 | - | 0.55754 |
| NA | XF1768 | transcriptional regulator (LysR family) | SubName: Full=Transcriptional regulator (LysR family); | chromosome | CDS | 1685230 | 942 | + | 0.674098 |
| NA | XF1720 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1641630 | 375 | + | 0.544 |
| NA | XF1987 | VacB protein | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 1899481 | 2154 | - | 0.565924 |
| NA | XF2295 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 2181723 | 1413 | + | 0.584572 |
| NA | XF2165 | transcription-related protein | SubName: Full=Transcription-related protein; | chromosome | CDS | 2052376 | 2319 | + | 0.532557 |
| NA | XF2633 | RNA polymerase beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2515906 | 4167 | - | 0.467723 |
| NA | XF1795 | conserved hypothetical protein | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 1708386 | 729 | - | 0.515775 |
| NA | XF0972 | transcriptional regulator (LuxR/UhpA family) | SubName: Full=Transcriptional regulator (LuxR/UhpA family); | chromosome | CDS | 928656 | 633 | + | 0.521327 |
| NA | XF0389 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 400823 | 684 | + | 0.497076 |
| NA | XF2085 | transcriptional regulator (AcrR family) | SubName: Full=Transcriptional regulator (AcrR family); | chromosome | CDS | 1978950 | 618 | - | 0.506472 |
| NA | XF0061 | transcriptional repressor | SubName: Full=Transcriptional repressor; | chromosome | CDS | 55178 | 1080 | - | 0.447222 |
| NA | XF0462 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 469587 | 222 | + | 0.540541 |
| NA | XF2506 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2386432 | 1383 | - | 0.543745 |
| NA | XF0914 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 880998 | 426 | + | 0.492958 |
| NA | XF2638 | transcription antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2523088 | 558 | - | 0.467742 |
| NA | XF1721 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1642019 | 393 | - | 0.633588 |
| NA | XF2524 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 2396898 | 1593 | + | 0.557439 |
| NA | XF1752 | transcriptional regulator (LysR family) | SubName: Full=Transcriptional regulator (LysR family); | chromosome | CDS | 1670660 | 975 | + | 0.653333 |
| NA | XF1013 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 973480 | 483 | - | 0.571429 |
| NA | XF1354 | transcriptional regulator (MarR family) | SubName: Full=Transcriptional regulator (MarR family); | chromosome | CDS | 1301820 | 438 | + | 0.511416 |
| NA | XF2715 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2603746 | 570 | + | 0.564912 |
| NA | XF0948 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 911484 | 546 | + | 0.547619 |
| NA | XF0955 | transcription termination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 916359 | 474 | + | 0.531646 |
| NA | XF1796 | bifunctional transcriptional repressor of the biotin operon/biotin acetyl-CoA-carboxylase synthetase | SubName: Full=Bifunctional transcriptional repressor of the biotin operon/biotin acetyl-CoA-carboxylase synthetase; | chromosome | CDS | 1709111 | 954 | - | 0.510482 |
| NA | XF2528 | phage-related protein | SubName: Full=Phage-related protein; | chromosome | CDS | 2401429 | 1419 | + | 0.570825 |
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