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# Chlamydia muridarum Nigg, Nigg

>TC0575 serine/threonine protein kinase
MQRYELIRLIGRGGMGEVYLAHDKACSRRVALKKIREDLSDNPLLRKRFL
REAKIAADLIHPGIVPVYSICSDGESVYYTMPYIEGFSLKHLLKSVWQKE
ILSKELEEKTSVKAFLPIFDKICATVEYIHSKGVLHRDLKPDNILLGLFG
EVVIVDWGAAIFKHAKELQQEKDEEGFSSYGQKNICYSSMTVPGKIVGTP
DYMAPESLLGAEASEKTDIYALGLILYQMLTLSFPYRRKKGRKLPYEDSI
LSPIEMAPYREIPPSLSQIAMKAIAVDPVQRFSSVQELRKALQPHLQGES
EWTTRDILSTKDRKNWKYYEPILLSRYFPVLASSPAQWYNFMLSDMEVNS
SVRVECSVTKSSVQEGVGIFFPPSKEADKGEFYCGYGLWFSSQNNELSVS
LIKNGIEIQKESQGIIPQQSRFAISIEKSNNKITVFVDQILFILHIDYLP
SLGERIEIIIQDLQGISNITILESIGALRVSCLAVPDAFLAEKLYDQAAR
FYRKIRDSFPGRKESYEAQFRLGVTLLTQIEEQGGDLMQALSTFDLLHGS
TGAPLEYLGKALVYQRNGSFVEEIRSLLLALKRYPQHPEIPRLKDHLCFR
LYDSLHKHRSEALVFMLLILWIAPEKIGLREEERFLEFLHHRQQSTLFCR
IDKTPLQFKSSKMELFLSFWTGFTLFLPELFQRARDLRDYQALIDIFYVV
CASGNKEVFSQFAEDLAIFVDEVVFPKSLHNQRGEELVLFVQGLAALQNR
EYRQAKEFISAVPFALQLYALDLFSLQAFIDEEVKVFSDFLQDIYNSASA
EDHKHVLVYMIQVSLWNQDLKQAYELLSKNFPQDKGLIEYSEAFVLWGCY
LALTGDRSAVKAHFSRCQFKYGRSALIGKCIDDDSLDYLEGLVWWEKKKT
LFQSYFLLRCLHAPKERYEVYRQAYISMENSFFG
>TC0899 RNA polymerase sigma factor, sigma-54 family
MLHQHQTASVALCPALHIQQSLDMLQMPVAELSEFLSQQITINPCFDLDA
LDDLPDTCSFFPISEHHPFTETLLSHLLHQIEVHFSLPQDRAIAQYIVGN
LSPEGLFLEDPSLSASNLGVSDVLFQKIWLRIQQFHPLGIASSSLQSYWL
SLLDPSSHKEALMIIRQHFNRLARCDFAGISKKIQLPIAKILVFLRQALA
SIPWCPAAGFPNSLKTPSPALPDAYLSFSHEKSWEIFMNKDSLPAIRLNS
TVLHIYHTLPRDDKDHLSQQIRAAKQLLRNIKKREETLLAVLRVLIPYQE
EFLLKKRSVPKAFSVKQLARELSLHETTICRAINNKTLATPIGLISMRSL
FPQAVGACPDQSKATILHWIHQWISTEKNPLSDEAISQKIIAKGIPCARR
TVAKYRSQLNIPPAHQRKHVNASLVP
>TC0743 acetyltransferase, GNAT family
MTTTRDPLLEIRYTVPEDAHYICLWLNDPKILRGFPLKTEAEIRDSVNFW
ISFYRCRSSLTAVYNGEVAGVATLILNPYVKVSHHSLLSIIVGERFRNKG
IGTALLNNLLHLGKTQLKLELVYLEVYEENPAIHLYERFGFVEVGRQKTF
YKDELGYLAKITMERAL
>TC0676 exoribonuclease, VacB/Rnb family
MGKAKNKKKVLKNKQQVLVPGILFVHPKKGFGFVSPDQPDLYPFDIFVPA
SDLKGALDGDHVLVALPFSQRGGEKRKGVIHKVLSRGKTVLVGTIISLIS
PTLAMVCVNAISPEVPLKAELLPKRTYKIGDRLLLKTPGWKENYPSKEPP
PLAMLEFMGNISNAKTDFPVIKAEFSITEEFPEAVVQEASQFLQKHVTQA
LHSRKDLRDLLCFTIDSASAKDFDDAVSLTYDHEGNYILGVHIADVSHYV
TPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAVSVF
MTFSKEGFLSDYRILRSVIRSKYRMTYDEVDEIIEKKLAHPISKTILEMA
ELSRIFSDIREQRGCTRLVLPSFTMSLDNLQEPVALVENKQTAAHKLIEE
FMLKANEVIAYHISHQGITMPFRIHEPPNEENLLLFRETAKAMGFTITQT
PTQEPDYQYLLQETSAGHPLEPILHSQFVRSMKTASYSTENKGHYGLCLD
YYTHFTSPIRRYVDLIVHRLLFHPLSVEEGHLEQIVRACSSQERVAAKAE
GAFINIKKARFLKKFLDEQPATLYKAFIITVSPEGLSFVLPELCHEGFIP
AAKLPKKYVIKTKLGLEELPEHLLPGIPISVQLASVTLLTQAIEWTLIES
KERSSSKKKKAKAKSNATQVKKKSSSKKKKAVSKAKKNRGGK
>TC0060 chromosome partioning protein, ParB family
MSKLPGEDTLLEVNIDDIRVSPFQPRRIFFEEDLKELILSIKAVGLIHPP
VVREIRNGDKVLYYELIAGERRWRALQSAGYKTIPVVLKQVLADDLAAEA
TLIENIQRVNLNPLEMAEAFRRLIVVFGLTQDKVAKKVGKKRSTVANYLR
LFSLSNEIQEKINSGELTLGHAKVILSLEDESLRQILSEKIISSKLAVRE
AEIEAKRLLKGKEDASKKEASLQKTSCLVSYQERLATTFGYPVTVKPQGK
RICVSFFVEGEEALESLEKALTAGSFEVTV
>TC0081 helicase, Snf2 family
MQTGTSNRSVNPLCFRGEMLNFRKLRRDFTANILQDGKELFTQGAVVSAK
ILSMNSETVCISAQIRGSYDNVYECEIEVDRAESDTIDSNCDCSYNYDCQ
HIVALLFYLEQYFNEMVVTYSKEAGLSSNEEVSKELQETFVVAATREEER
RDREHQKEILREYNHAANVLSENPFFLPLEYSEKDSAELAVLFVPQKNEK
EVFSPNQPIEFQLVLRLPGRSKPFYISNIKTFLEGVLYQEPIVFSGRRFF
FTLQSFSASDRKLIDLLIRYARYATGNAEEKLLKSAFLTPASLGMILSKM
LEHQMAESGGVKLGERECFQGIFCGNLEEPLFWSVSPAKMKFHLDYFDTP
YKALLMKPLVVVDEEEIQPEHAVLLESNCPGIIHKNVYHHFLPQIKRAHI
RTFAGLRDVAIPEALFGSFCENALPVFRDYAELSNIEALNVFSTLPYTEE
LRGVCDISYLDGELEAKLFFLYDGQRVPATSFSLQYQDVRAFVRPDGILA
RNLVEERKILEEVFAGFIYDERDGAFHVKSEKKIVEFMTETIPNNQHRIT
FNCPETLSDQFIYDETVFDLTFRAGADINYYEAELKVHGLLKGISLDLLW
DCISAKKRFLELPKKGCQLKKARRGKAQASKLPCILVLDLEKIAPVIQIF
NEIGFQVLDDFVEKCPLWSLSGISSASFKNLPVNFSMTEDLAEIQKQIRG
EVDFEFQEVPSQIQATLRSYQKDGVHWLERLRKMHLNGILADDMGLGKTL
QTIIAVTQSRLEKGGGCSLIICPTSLVYNWKEEFRKFNPEFKTLVIDGIP
SQRRKQLSSLEEYDVAITSYNLLQKDIDIYKDFLFDYVVLDEAHHIKNRT
TRNAKSVKMIRACHRLILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVG
KYIRIGNYMGNKADNVEALRRKVAPFILRRMKEDVLEDLPPVSEILYHCH
LTESQRELYQSYAASARQELSRLVKQEGFERIHIHVLATLTRLKQICCHP
AIFAKDTPEPGDSAKYDMLMDLLGSLVDSGHKTVVFSQYTKMLGIIKQDL
EAKGVPFVYLDGSTKNRLEIVQQFNEDPSLLVFLVSLKAGGTGLNLVGAD
TVIHYDMWWNPAVENQATDRVHRIGQSRSVSSYKLVTLNTIEEKILSLQN
RKKGLVKKVINSDDEVVSKLTWEEVLELLQI
>TC0686 conserved hypothetical protein
MLCPFCNHGELKVIDSRNSPEANAIKRRRECLRCSQRFTTFETVELTIQV
LKRDGRYENFQEAKLINGLKAASSHTRIGQEQVQAIASNIKQDLLGKQNR
EISTKEIGELVMKYLKKADMIAYIRFACVYRRFRDVGELMEVLLSATPDG
EK
>TC0483 transcriptional regulator, putative
MTKLPYALLEKGSLLIASPDVNGGVFSRSVILVCEHSPNGSFGLILNKTL
EMDSPEEVFPLDHFDESRVRFCMGGPLQANQIMLLHSSSSEDANSSIEIC
PSVFLGGDFSFIQEGEIKSNDEKMLFCFGYSGWQAGQLEKEFLEGLWFLA
PASQEIVFTARPDKLWSDVLQNLGGRFASMSTVPENLLLN
>TC0919 transcriptional regulator
MAGPKHVLLVSENWDLFFQTKKLLNPEEYRCTIGQQYKQEVSADLIVCEY
ELLPKDIHAPKYFEANFVIVLLDVFDEEKCIDLLDRGFWFLVQPITPRLL
KAAIGAFLSQGSLHSVPESIQFGPNVFHILKLIVETPEGTIHLTPSESGI
LKRLLLNQGQLCLRKHLLEEIKNHSKEIVARNVDVHIASLRKKLGAYGNR
IVTVRGVGYLFSDDEEKNSSQEDTKLS
>TC0219 N utilization substance protein B, putative
MIMSVMASDSARAVVCTSRPFPKQKLRELVLQALYALEMAPKGEDSLVSL
LMTEASVSKKNVLYALMFCKAIRANQSELDALLNATIRTTTLANLTIIER
NILRMMLFEHQQNQESSPIPTAVLIAETTRLIKKFSYVEGSSLILAVLGS
IFDQVAQEPASMCG
>TC0341 ABC transporter, permease protein, putative
MLSCIFKDTIFLSSFLAVSLICMTTALWGTILLVERRPLLSESLSHACYP
GLLIGALLSYKVPLFSDSLWIIILCGCAASILGCLCIAFLEKKLAMHKDS
ALCLILVSFFGVGVILVSYVKDSCPLLYNKINAYLYGQAATLGYAEARLA
LIIFCLSAFVLWWWYRQISVAIFDREFAYSCGLRTRTAEMIVLVFISLVI
VSGVRSVGILLISAMFVAPPLSARQLSDKLSSILILSSIFGGICGALGCY
FSVAFTCQSIIEGKATVIVLPTGPLVVFFAGVLVFLCLIFSWKTGWITRY
IRRKLFLFSRDEEHLLKIFWYLQEQNIYRVSMWDFVRSRKLQEYFGSKAF
SGFRMFWLCKKGLVSCFDHQXFLTDKGEAKAAKLVRAHRLWESYLVSELD
FNKSKVHNFAEEMEHVLTDELDTTLSKMLQNPDYDPHKREIPKLKGK
>TC0331 RNA polymerase sigma factor, sigma-70 family
MKTQDLADTWQLYWSTKEIHHRDFLIEAYLPLVKNVAHRLASGMPSHVKI
EDLYASGVEGLVRAVERFDPEKSKRFESYALFIIKAAIIDDLRKQDWVPR
SVYQRANRLADAMDALRQTLGKEPTDGDLCEYLNISQQELSHWFSSSRPA
LVLSLNDDFSCQDEDEGLALEERIADERAENGYDVIRKKEAISILTEALL
SLDEKERQVMALYYYDDLVLKEIGKILGVSESRVSQIHSKALLKLRGTLS
SLL
>TC0843 helicase, Snf2 family
MILMILNSLSMFRRQATRFLQDNRESIAVSFFKNTYKITIPDEDSPDGEW
ISTLSFNEEERLSFAACSCPDGDCCEHLLIATLAAYTPTEGALLHTKFEA
SFWWRLFCKLFLSKASLQAPGEKIYTVKSEQISVSIQCLSAESLTSWLPI
VHNSPEPQKITEETFPQSALYRIARELFLYTQKGASLIVQENPQGFPSLF
SFQWAGISLTIEILDVDTLKELFPLLELSQTSLYNGDSYLLRDVHVVPEQ
AKIYFTKEYPPLSKSIREYQATNLGSIEYFAGAHKCTAIPQKLSLPIHII
PALDHSFREQLLSQLCYETEERPIHYDIHFFRDASLSFSAYLETPGDLAE
GHIIYPGFCYIPNKGLLAVSGLLSPESTFTIRADHIESFLDEYGALIKEP
GFETFSNKSPTGTLSYSVTEQGVLLFHYDTGNSSDIELNFGKWTYYSRQG
FFLNSRLDLALQDGLTIEAPHVADFILKHEVALKSIPNFFAPQPPLKTIR
FEVHKEKKGVGIYLKPIFEGLEQESCRLFGQFLYRENIGFSLLPASLQMV
CQIPTEVPANQVTEFLLQFSKDDRMIFPDPQLALPEQVQLNILSIQRPHP
SSPLHLKLEIKTNIGSISLGTVLQALKGKKEFLFSKAGFLNLDNCLFVFL
KQFLSSQRYDIQESTLITMVTDIFKLDALAPLITDPNIDASEEDLAYFSQ
LKSACLPPIPMNLFSTDHKLRPYQNSGLLWLWFLYNHRLSGLLCDEMGLG
KTHQATALLDIVAQTAKNPKFLVVCPTSVLPHWELVLASHLPKATLFSFH
GPHKPKTLPDCDIIITSYGTLRQNYALFYKVSFTVAVFDEIHMAKNKSSQ
IHKILCRLDAQMKLGLTGTPVENNLIEFKGLLDIILPNYLPSDGLFKRLF
THKNSSETDENIVSSKDLLLKLTRPFILRRTKKLVLPELPDKVESLIPCQ
LSPEQAQLYASTLKKEKCQIQQLEKEDDPAAVNYLHVFALLNQLKQICDH
PAIYFKDPESYKNYASGKWAAFVKLLNDSLASGYKVVVFSQYIQMIRIIS
LYLEEQNIQYALVQGKSQNRKEEIDRFSNDPNCRVFIGSLLAAGTGINLT
AGNVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLVTEDTLEEHIHY
LIEKKMRLLNQVTTTQDSNILHVLNREDLITILSYKDEHGLSDEVQEDSG
DS
>TC0834 conserved hypothetical protein
MFMKKVVFIAAIFSSIVFWEKIPYSHRIKQFAMDYGVELVEKSSQLVRKI
SGNERLCVFERRISEEQVLAMFAKDKASAELLFVPHVLMRVRFSGEEDKR
AGSHEGAVLWSLSNGEMVLNTGSWTYSKGFRECLMLKAGKQDVQLMQILA
GMGGAAPKEVLSQALSMRNVRADRVIRACQKKKLIFTHDNLIYSHFQQPQ
PIKGCMTVFNSSPVWLAKPKGATVCSIVYPEDRIQNLVEMIFGDNFFILS
SEHIHVPVYKVSIAASDSSVRVEYINAITGKPFDFAPSHRK
>TC0044 serine/threonine-protein kinase
MLELGVSFPSKTKYLLTRELSRKVGLTVYQGVDESSSRPVVIKALVSPGI
HDQRFLRAFEEEARIMQLVDHPAFVRLEEKGEWEQGRYFVSEYILGHSLR
DIILSSHLALDKAVSIVLQVAQAITALHKHHVLHLDIKPENIMISRLGEV
KLIDYGLSAWQFNHWGSPAYMSPEQSRQEKLSPASDVYALALLAYELIMG
QLSLGKVYLSLLPVKISKVLTQALQPDPEARFPSMQEFATALQDYLMHDV
HEDYRKKDRVIMQFEQLQQQNMWLAPDKLCMPEGMALHIYSQKEPCDLHN
VYYDILRSEDIVELWFCYAQGHCSFALSMIKQFLNQRTEKAQDIPTVIKT
LDTLCKTMHIPLCEKGISCCCFIFFQQELMCFSCGKTDFSLKKQTRGVQR
FQAESQGIGEEGPLEIHKQSFLWEPGDELIVHTPRARDLVYLYCPSFLKL
QDRGQMDIFCQTDYLQKEVRQKYDGSLYPSTLISLKRVR
>TC0385 conserved hypothetical protein
MFKLIKSAFLLTCCVLGYFWIKKESIVEQWLSRQLHTQVTVGNISPGLSK
TKIRHLCIHNPFPSDKYPYAVEVEYVSLRYSIVTMLLSKKIDISDVILQG
TSLTVFPCEGSAKTNWSFFWDNFINHFSSPPTFHSQSFESSIDTVPVFIK
RCLCTNTRVCGVKNNYKEIPTTPIPSLEFRGALSCSPLPTLGETARSLLY
LIVEESFYHANVSGDIARPLAKQARAYFNSSLSEYSHLRQRGAFPPNNLT
HEIEGFMKELLFR
>TC0877 regulatory protein, putative
MTIPIHENRYAMVSFTRTIGFRLWLICVAAIMFPLGINIFQLNLQQYKKT
LVSTTSDLRENALFKAHTLQQVIPLNVDILALFSEIFDLDRGVPSEPDLV
LSKEMEKIFHSTYKEISLVKKDADGNFTVVASSQIQQLGKNYNQEIFLSS
YQPFLATLRHSDGTSPVLSVLQTNIFDISSQEVLGILYTLSDTDYLLDGL
LASKNPRAIKTAILSKNGIILQATDSTLNLISIYKEVSQEQFCDVFLRKD
FCPPHLLLRSPLNLSPLPYGEGFVSFYIGDKEMWGYIHPLQDMDFCILTY
EEKTTIFASLWRRALLYFAYFCCVLLGSITAFLVAKRLSKPIRKLATVMI
ETRRNQHHPYEPDSLGFEINRLGEIFNSMVQSLSQQQSLAEKNYEIKQQA
QNALRLGEEAQQRLLPNQLPHYPTAEIAKAYIPAITVGGDFFDSFVIGEG
DQAKLFLIVADASGKGVNACAYSLFLKNMLHTFLSELSSIQEAVQQTSSL
FYKQTAESGMFVTLCIYCYHYATRQLEYYSCGHNPACLRMPNGEVSFLSH
PGMALGFLPEVPPHPAYTLTLEEESLLVLYTDGVTEANNKHGEMFGEERL
KTLIASLTKHSAEEAIQSIMLSIKSFVKDYQQHDDITLLVLKITKTDTAH
>TC0673 hcrA, heat shock gene repressor HcrA
MENRTEMSQLRASKKDSKISHVLLMAIKLYLESGQPVGSKLLKETYCSDL
SSATIRNYFAQLETDGFLRKNHISGGRIPTDLAFRYYADHCSPVLEQEEI
SIIQQKLKELPEYSKNIVKDLQKASEILSEILQLPVCFSSPRFESDSVTN
IQLVSIDDLRVVFVLSTEFGQLFTDVLWLPEQLPENSLKRIESFLQNYLR
KHPSSVPLSQKEEDLGMTLYNEVVVRYLTRYCHFSEEDLYQTGLSRLLKY
EVFKDPETLAQGLSFFENRKHMCQLLNSHLHKKAPTTFIGRELSDIVGNA
DPSCAVITVPYYMDRTPLGAFGVLGPMNLPYQQVFGTLSLFTERLKTILT
QSFYKFKLSFRRPCPTDPRCSQKPAELTRRSSIKLLPAKELT
>TC0372 nusA, N utilization substance protein A
MNKDLVAIFDYMEREKGIQRSTIVGAIESALKIAAKKTLRDDANVSVSIN
PRTGDIEVFCEKQIVEKCQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSD
QFGRIAAHAARQIIGQKLRHAERDVIYEEYRHRKNEIISGVIKSFSRGSN
LVVDLGKVEGLLPARFYPKTEKHKVGDKIYALLYEVQESENGGAEVILSR
SHPEFVKQLFMQEVPELEEGSVEIVKIAREAGYRTKMAVRSSSPQTDAVG
AFVGMRGSRIKNIIRELNDEKIDVVNYSPVSTELLQNLLYPVEIQKIAIL
EDDKVIAIIVQDSDYATVIGKRGINARLISQILGYELEVQRMSEYNKLLE
IQRLQLAEFEDPRLDQPLEVEGINTLIVQNLEHAGYDTIRKILLASASEL
ASVPGISLELAYKILEQVSKYGACKVDEKPKVED
>TC0594 nusG, transcription antitermination protein NusG
MFKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKG
EHKIVEKYIWPGYLLVKMHLTDESWSYVKKTQGVVEFLGGGAPVALSEEE
VKNILADLEEKKSGVVQKHKFEVGSQVKINDGVFVNFVGVVSEVFHDKGR
LSVMVSIFGRETRVDDLEFWQVEEVAPGQESE
>TC0778 rho, transcription termination factor Rho
MAVTKIAKLQRMGINELNVLARQYGVKNVGSLTKSQVVFEIVKAKSERPD
EFLIGEGVLEVLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDT
IVGTIRSPKEKEKYFALLKVDKINGSTPDKAKERVLFENLTPLHPNERLI
MEMGKENLAERVLDLTAPIGKGQRGLIVAPPRSGKTVILQSIAHAIAVNN
PDAELIVLLIDERPEEVTDMIRQVRGEVVASTFDEQPDRHIQVAEMVIEK
ARRLVEHGKDVVILLDSITRLARAYNTVQPHSGKILTGGVDASALHKPKR
FFGAARNIEGGGSLTILATALIDTGSRMDEVIFEEFKGTGNMELVLDRHL
SDRRIYPAIDLIKSGTRKEELLYHPGELEKVRLFRQAIAGLTAIDAMQLL
LGRLKKTNSNTEFLLSLKD
>TC0570 rnc, ribonuclease III
MQRTVNIQAVESKLKFTFSQPRLLVTALTHPSYRNEFPSDGEDSERLEFL
GDAVLGLVVTEHLFLLFPSLNEGLLSTTRSALVNAEACFNYTQKLSLGEH
LLIGRGEKMQSHRGKISAYANLFEAILGAVYLDGGLAPARQIIVPLLPNK
EAILPLMLVNPKNRLQQFTQQTLKVLPTYIALPWSSEDGTPGYHVQVFVN
EKLWGEGFAGSKKEAEKLAAKQALSTHDDNKN
>TC0794 rpoA, DNA-directed RNA polymerase, alpha subunit
MSTKKTTKSVVIAKEFGMSDNSHNLLYNKFELPESVKMSPVEGAAGGIDK
VARFVADPLEKGMGHTLGSALRRALLIGLEAPAIVSFSMTGVLHEYMAVE
GIIEDVTNIVLNLKGSLLKKYPLQDCEGGRASQKLRATISIDASDLAAAG
GQKAITLGDLLQEGTFEAVNPEHVIFTVTRPMQLDVMLRVAFGRGYTPSE
RIVLEEREMNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLILQVETDG
RVAPKEAVAFATQILSKHFSVFEKMDEKRIVFEEAISVEKENKDDILHKL
VLGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNFGKKSLCEI
KNKLKEMKLELGMDLSQFGVGLDNVKEKMKWYAEKIRSSKNTKG
>TC0589 rpoB, DNA-directed RNA polymerase, beta subunit
MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEE
VFREIFPIKSYNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFR
LTDETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQE
KHSKGNVLFSFRIIPYRGSWLEASFDINDLIYIHIDRKKRRRKILAMTFI
RALGYSTDADIIEEFFAVEEHSLRSEKDFVALVGKVLADNVVDADSSLVY
GKAGEKLSTAMLKRILDAGVQSLKIAVGADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNKKLGFP
LDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVG
ELIQNHCRSGLARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDF
FSRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHSSHY
GRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVRDGIVTDEIEY
MTADVEEDCVIAQASAELDEYNMFKDSVCWARYKGEAFEADTSTVTHMDV
SPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAAIVGTGLE
GRAAKDSGAIVVAQEDGVVEYVDSYEIVVAKKNNPTLKDTYPLKKFLRSN
SGTCINQTPLCSVGDVVTHGDVLADGPATDKGELALGKNVLVAFMPWYGY
NFEDAIIISEKLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEE
VLANLGEDGIVRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKA
ADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKE
YKSQLAQLKMEHREKLGALLLNEKAPAAIIHRRSADILVQEGAVFDQETI
ELLERESLVDLLMAPCDMYDVLKDILSNYETAVQRLEVNYKTEAEHIKEG
DADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPFL
ANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPE
SRIWDMMIEQGLPEDGKSYLFDGKTGERFDSKVVVGYIYMLKLSHLIADK
IHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVV
DA
>TC0588 rpoC, DNA-directed RNA polymerase, beta` subunit
MFKEGSRDDAALAKEGLFDKLEIGIASDVTIRDKWSCGEIKKPETINYRT
FKPEKGGLFCEKIFGPTKDWECYCGKYKKIKHKGIVCDRCGVEVTLSKVR
RERMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDLERVIYYEEYVVID
PGNTDLVKKQLLNDAKYREVVEKWGKDAFVAKMGGEAVYDLLKSEDLESL
LGELKDRLRKTKSQQARMKLAKRLKIVEGFVSSSNRPEWMVLKNIPVVPP
DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRV
DYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSA
KKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAI
RVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPSSGK
PVATPSKDMTLGIYYLMADPTYFPEEHGGKTKVFKDEVEVLRALNAGGFI
LKDEICGSRRDETGRGIHIHEAIKVRIDGQIIETTPGRVFFNTIVPKELG
FQNYSMPSKRISELILQCYKKVGLEATVRFLDDLKELGFVQSTKAAISMG
LKDVRIPEIKKEILKDAYDKVAVVKKQYEDGIITDGERHSKTISIWTEVS
DLLSNALYAEIKKQTNSKHNPLFLMIDSGARGNKSQLKQLGALRGLMAKP
NGAIIESPITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTRRL
VDVAQDVIITEKDCGTLNHIEVSTIRQGSEELLPLKDRIYGRTVSENVYQ
PGDKSNVLAYAGDVLTSSQAEAIDDAGIDSVKIRSTLTCESRRGVCAKCY
GLNLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEI
VAECDGILVYLDLRFVVDQEGNNLVLNKMGALHLVRDEGRSLSEYKKLLS
TKSIESLATFPVELGAKILVDDGAAVTAGQRIAEVELHNIPIICDKPGFV
HYEDLVEGVSTEKVTNKNTGLVELIVKQHRGELHPQIAIYADANMQELVG
TYAIPSGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEA
RKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEVTGMEEEHLISLTKHLI
VQRGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVD
INDKHIEIIVRQMLQKVRITDPGDTTLLFGEDVDKKEFYEENRRTEEDGG
KPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGF
KENVIMGHMIPGGTGFDTHKRIKQHLEKEQEDLVFDFDSEFESVAG
>TC0905 rpoD, RNA polymerase sigma factor RpoD
MRMDTLDSQAADAAQEEEIQRKLEELVTLAKDQGFITYEEINEILPPSFD
SPEQIDQVLIFLAGMDVQVLNQADVERQKERKKEAKELEGLAKRSEGTPD
DPVRMYLKEMGTVPLLTREEEVEISKRIEKAQVQIERIILRFRYSTKEAV
SIAQYLINGKERFDKIVSEKEVEDKTHFLNLLPKLISLLKEEDSYLEERL
LALKDPALSKQDQAKLNDELEKCRIRTQAYLRCFHCRHNVTEDFGEVVFK
AYDSFLQLEQQINDLKVRAERNKFAAAKLAAARRKLYKREVAAGRTLEEF
KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEG
NMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIE
TINKVLRGAKKLMMETGKEPTPEELGEELGFTPDRVREIYKIAQHPISLQ
AEVGDSGESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFV
LIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLR
AFLDLLEEEKTGSGKIKSYKN
>TC0124 trcF, transcription-repair coupling factor
MDFDPTSINFSHFSLLKDSKLPSLVENLHSGAKAFIVAKLFKELRRSIVI
ITTPARVDDLFEDLTTLLKESPLEFPTSEIDLSPKLVNIDAVGKRDHILY
SLQKQCAPVVCITTLKALLERTPSPESLLSDHLELKVGEELDPDTLVDLC
KNLGYRHEALAREKGDFAFRGGIVDIFPLSSSEPFRIEFWGDRISSIRSY
NPSDQLSTGKISQITISSATAIIPTDKLSHSLLDYFETFPLCIFDEVSSL
EDNFSDIAGILSSLPKRFIPIQDLCRRILRESVPLFFEENLFPNLLTHKD
TGCALEVFHEKISVQRVSLPFIYPHALIETSHEQNPLLAFLKTFQDFCSD
RTLSLALYSSNTKSLKEAHDLTASFIKKPQIYDCPKALSSSFALVESGFA
AISLSEFAANKVLRRQKQRNYFSSTTEEVYVPVPGETVVHLHNGIGKFIG
IEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGASEKAPDLHH
LNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYPTHGEEVIKFA
ESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVK
AVCDGQKQVIVMVPTTILANQHFETFSQRMAGLPITIGLLSRFSQGKAMK
KTLEDVAQGRIDILIGTHKVINKSIEFHNPGLLIIDEEQRFGVKAKDALK
ERYPTIDCLTVSATPIPRTLYLSLSGARDLSLITMPPLDRLPVSTFVMEH
TEETLSAAIRHELLRGGQVYVIHNRIEGIFRLGETIRTLIPEARIGVAHG
QMHSDELANIFYKFKTQQTNVLVATALIENGIDIPNANTILIDHADKFGM
ADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPASKRLEALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAVGFNLYCKLLKKAVAALKHKKKPML
FHDDVRIEFPYHSRIPEDYIDLASMRIEFYQKIGNAESKEELEAIEEELR
DRFGPLPEEVYWLFALAQIRLIALEYHLSSIKGTGNALYIQQYHDKEKQV
QKTLPYSLSPTPTLLVKEVQESIEKAFPKK