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2024-05-20 02:32:29

Gene list

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COG category: Transcription
Organism: Bacteroides fragilis YCH46, YCH46

Number of genes found: 233

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bacteroides fragilis YCH46, YCH46
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BF0521 hypothetical proteinchromosome CDS596414 237 + 0.345992
NA BF1199 putative nitrogen utilization substance proteinchromosome CDS1433495 777 + 0.362934
NA BF3891 two-component system response regulatorchromosome CDS4433938 780 + 0.447436
NA BF3572 putative transcriptional regulatorchromosome CDS4084348 900 - 0.406667
NA BF0115 TraOchromosome CDS121430 576 - 0.588542
NA BF0764 GTP pyrophosphokinasechromosome CDS910903 2244 - 0.460784
NA BF1336 putative RNA polymerase ECF-type sigma factorchromosome CDS1579526 549 + 0.462659
NA BF3961 ATP-dependent DNA helicase RecGchromosome CDS4515941 2097 - 0.444444
NA BF3731 RNA polymerase ECF-type sigma factorchromosome CDS4240277 549 + 0.43898
NA BF3863 MarR family transcriptional regulatorchromosome CDS4402692 447 + 0.431767
NA BF0738 conserved hypothetical proteinchromosome CDS873322 876 + 0.402968
NA BF3060 transcriptional regulatorchromosome CDS3457765 822 - 0.495134
NA BF3344 hypothetical proteinchromosome CDS3819399 357 - 0.431373
NA BF0209 two-component system response regulatorchromosome CDS226735 687 + 0.465793
NA BF4294 two-component system response regulatorchromosome CDS4897998 756 + 0.400794
NA BF2775 putative transcriptional regulator UpxY homologchromosome CDS3188586 519 + 0.593449
NA BF2196 conserved hypothetical proteinchromosome CDS2562050 534 - 0.466292
NA BF1113 conserved hypothetical proteinchromosome CDS1336314 504 + 0.382937
NA BF2017 ATP-independent RNA helicasechromosome CDS2367090 1320 + 0.500758
NA BF0562 putative transcriptional repressorchromosome CDS645031 981 + 0.474006
NA BF3864 two-component system response regulatorchromosome CDS4403533 711 - 0.416315
NA BF0461 hypothetical proteinchromosome CDS541859 1071 + 0.369748
NA BF3523 AraC family transcriptional regulatorchromosome CDS4028730 867 - 0.351788
NA BF0535 transcriptional regulator of arginine metabolismchromosome CDS611288 474 - 0.445148
NA BF0218 ribonuclease IIIchromosome CDS240777 873 - 0.418099
NA BF2601 conserved hypothetical proteinchromosome CDS2987871 1434 - 0.412831
NA BF0797 putative transcriptional regulatorchromosome CDS952984 213 - 0.295775
NA BF3062 transcriptional regulatorchromosome CDS3459100 807 - 0.526642
NA BF3263 conserved hypothetical proteinchromosome CDS3713240 303 - 0.471947
NA BF0763 transcriptional regulatorchromosome CDS910483 366 + 0.453552
NA BF1920 putative transcription regulatorchromosome CDS2257132 867 + 0.311419
NA BF0534 conserved hypothetical proteinchromosome CDS610676 579 - 0.442142
NA BF4119 transcriptional regulatorchromosome CDS4716431 597 - 0.39866
NA BF0994 hypothetical proteinchromosome CDS1200692 435 + 0.383908
NA BF0316 RNA polymerase ECF-type sigma factorchromosome CDS350201 507 - 0.408284
NA BF3976 putative transcriptional regulatorchromosome CDS4542207 375 - 0.378667
NA BF1504 transcriptional regulatorchromosome CDS1750850 900 - 0.433333
NA BF3363 transcriptional regulatorchromosome CDS3842260 879 + 0.401593
NA BF2958 putative two-component system response regulatorchromosome CDS3358985 402 - 0.383085
NA BF3376 conserved hypothetical proteinchromosome CDS3863498 312 - 0.451923
NA BF1863 error-prone repair: SOS-response transcriptional repressor UmuD homologchromosome CDS2192260 444 - 0.427928
NA BF0618 RNA polymerase ECF-type sigma factorchromosome CDS727971 588 + 0.404762
NA BF3521 AraC family transcriptional regulatorchromosome CDS4026045 879 + 0.362912
NA BF4570 ribonuclease Rchromosome CDS5254039 2145 + 0.494639
NA BF3094 AraC-type transcriptional regulatorchromosome CDS3497368 843 + 0.472123
NA BF2122 putative transcriptional regulatorchromosome CDS2468653 546 + 0.441392
NA BF3870 RNA polymerase ECF-type sigma factorchromosome CDS4410323 558 + 0.482079
NA BF4191 DNA-directed RNA polymerase beta' chainchromosome CDS4782457 4284 - 0.447479
NA BF1207 putative transcriptional regulatorchromosome CDS1440940 897 + 0.394649
NA BF3992 TonBchromosome CDS4562242 1734 + 0.462514
NA BF4415 conserved hypothetical proteinchromosome CDS5044721 1659 - 0.425558
NA BF1463 RNA polymerase ECF-type sigma factorchromosome CDS1707668 504 + 0.450397
NA BF3123 conserved hypothetical proteinchromosome CDS3535423 216 + 0.416667
NA BF3585 RNA polymerase ECF-type sigma factorchromosome CDS4096559 576 - 0.387153
NA BF2742 RNA polymerase sigma factor RpoDchromosome CDS3154573 861 - 0.457607
NA BF2166 GTP pyrophosphokinasechromosome CDS2529130 2214 - 0.438573
NA BF1428 putative transcriptional regulatory protein UpxY homologchromosome CDS1673613 519 + 0.412331
NA BF0574 putative transcriptional regulatorchromosome CDS665602 351 - 0.461538
NA BF2117 AsnC family transcriptional regulatorchromosome CDS2465059 468 + 0.376068
NA BF1766 hypothetical proteinchromosome CDS2081249 870 - 0.4
NA BF1324 RNA polymerase ECF-type sigma factorchromosome CDS1564048 600 - 0.395
NA BF2198 two-component system response regulatorchromosome CDS2563448 696 - 0.446839
NA BF3426 AraC/XylS family transcriptional regulatorchromosome CDS3915984 465 - 0.391398
NA BF2668 conserved hypothetical proteinchromosome CDS3068627 363 + 0.429752
NA BF1850 hypothetical proteinchromosome CDS2177514 243 - 0.382716
NA BF4143 putative transcriptional regulatorchromosome CDS4749111 645 - 0.404651
NA BF2945 conserved hypothetical proteinchromosome CDS3350970 315 + 0.412698
NA BF1891 RNA polymerase ECF-type sigma factorchromosome CDS2223609 504 + 0.375
NA BF4437 transcription regulatorchromosome CDS5078245 888 + 0.385135
NA BF4513 putative nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferasechromosome CDS5180676 711 - 0.499297
NA BF3260 RNA polymerase ECF-type sigma factorchromosome CDS3709817 561 - 0.417112
NA BF2313 hypothetical proteinchromosome CDS2685951 201 + 0.447761
NA BF1072 putative transcription regulatorchromosome CDS1293969 669 + 0.41704
NA BF0169 ATP-dependent RNA helicasechromosome CDS181580 1911 - 0.495029
NA BF1156 conserved hypothetical proteinchromosome CDS1392273 2364 - 0.44797
NA BF4465 transcriptional regulatorchromosome CDS5121837 576 + 0.444444
NA BF0368 putative transcriptional regulatorchromosome CDS420669 978 - 0.402863
NA BF3603 conserved hypothetical proteinchromosome CDS4112297 294 - 0.428571
NA BF4155 DNA-directed RNA polymerase alpha chainchromosome CDS4761360 993 - 0.379658
NA BF1159 conserved hypothetical proteinchromosome CDS1397497 243 - 0.427984
NA BF3609 RNA polymerase ECF-type sigma factorchromosome CDS4117851 540 + 0.392593
NA BF0275 RNA polymerase ECF-type sigma factorchromosome CDS305117 543 - 0.383057
NA BF3941 putative transcriptional regulatorchromosome CDS4492554 840 - 0.410714
NA BF3041 conserved hypothetical proteinchromosome CDS3442122 516 - 0.453488
NA BF4516 transcriptional regulatorchromosome CDS5183514 465 + 0.460215
NA BF4324 transcription elongation factor GreAchromosome CDS4921348 465 - 0.395699
NA BF2033 AraC-type transcription regulatorchromosome CDS2386329 840 - 0.45119
NA BF4197 transcription anti-termination proteinchromosome CDS4792973 543 - 0.406998
NA BF2664 transcriptional regulatorchromosome CDS3065280 609 - 0.441708
NA BF0602 LuxR family transcriptional regulatorchromosome CDS710349 597 - 0.527638
NA BF0756 RNA polymerase ECF-type sigma factorchromosome CDS901026 555 - 0.463063
NA BF0980 putative two-component system response regulatorchromosome CDS1184989 843 + 0.472123
NA BF2477 conserved hypothetical protein related to phagechromosome CDS2853236 315 + 0.349206
NA BF3953 putative RNA polymerase ECF-type sigma factorchromosome CDS4509763 579 - 0.409326
NA BF0529 transcriptional regulatorchromosome CDS605858 555 - 0.464865
NA BF1480 RNA polymerase ECF-type sigma factorchromosome CDS1723663 549 + 0.31694
NA BF3091 transcriptional regulatorchromosome CDS3494272 831 - 0.434416
NA BF1053 RNA polymerase ECF-type sigma factorchromosome CDS1265765 582 - 0.462199
NA BF2703 putative transcriptional regulatorchromosome CDS3105808 357 - 0.487395
NA BF3575 putative ATP-dependent DNA helicasechromosome CDS4086993 642 + 0.433022
NA BF3166 hypothetical proteinchromosome CDS3586750 1107 + 0.322493
NA BF2299 ATP-dependent RNA helicasechromosome CDS2672495 1257 - 0.416866
NA BF2736 two-component system response regulatorchromosome CDS3149143 678 + 0.471976
NA BF2483 hypothetical proteinchromosome CDS2856599 408 + 0.387255
NA BF4192 DNA-directed RNA polymerase beta chainchromosome CDS4786887 3813 - 0.435353
NA BF1751 ROK family transcriptional repressorchromosome CDS2058812 858 + 0.391608
NA BF1981 conserved hypothetical proteinchromosome CDS2324324 207 - 0.352657
NA BF2070 putative transcriptional regulatorchromosome CDS2417642 918 - 0.324619
NA BF0950 RNA polymerase ECF-type sigma factorchromosome CDS1146395 576 + 0.333333
NA BF3981 RNA polymerase ECF-type sigma factorchromosome CDS4549235 555 - 0.454054
NA BF0992 RNA polymerase ECF-type sigma factorchromosome CDS1198703 582 + 0.400344
NA BF2233 probable two-component system response regulatorchromosome CDS2607703 729 + 0.415638
NA BF2185 two-component system response regulatorchromosome CDS2551946 675 + 0.466667
NA BF3783 RNA polymerase ECF-type sigma factorchromosome CDS4305681 573 - 0.352531
NA BF0516 probable transcriptional regulatorchromosome CDS592301 291 - 0.319588
NA BF1637 conserved hypothetical proteinchromosome CDS1905677 450 - 0.442222
NA BF1868 two-component system response regulatorchromosome CDS2195739 699 - 0.470672
NA BF2701 transcriptional regulatorchromosome CDS3104237 1065 + 0.443192
NA BF3407 RNA polymerase ECF-type sigma factorchromosome CDS3893875 474 - 0.360759
NA BF4126 putative transcriptional regulatorchromosome CDS4723367 369 - 0.398374
NA BF3686 putative transcriptional regulatorchromosome CDS4195090 354 + 0.322034
NA BF3504 AraC family transcriptional regulatorchromosome CDS4004556 858 + 0.402098
NA BF2685 conserved hypothetical proteinchromosome CDS3084799 1521 + 0.316239
NA BF2607 conserved hypothetical proteinchromosome CDS2998044 1080 - 0.471296
NA BF4557 transcriptional regulatorchromosome CDS5241965 819 - 0.40293
NA BF4342 transcriptional regulatorchromosome CDS4943443 228 - 0.45614
NA BF3308 LacI family transcriptional regulatorchromosome CDS3765401 1011 + 0.530168
NA BF4301 putative transcriptional regulatorchromosome CDS4905881 837 + 0.394265
NA BF1705 putative xylose repressorchromosome CDS1977051 1209 - 0.368073
NA BF0224 conserved hypothetical proteinchromosome CDS245828 714 + 0.408964
NA BF0214 Snf2 family helicasechromosome CDS233811 3051 - 0.441495
NA BF3213 transcription termination factor rhochromosome CDS3640914 2064 + 0.481105
NA BF3333 putative acetyltransferasechromosome CDS3805648 504 + 0.503968
NA BF3127 transcription-repair coupling factorchromosome CDS3538367 3378 - 0.469213
NA BF1334 redox-sensitive transcriptional activator OxyRchromosome CDS1577555 927 + 0.502697
NA BF3539 transcriptional regulatorchromosome CDS4044985 579 - 0.46114
NA BF1140 putative acetyltransferasechromosome CDS1367934 900 - 0.435556
NA BF4476 RNA polymerase ECF-type sigma factorchromosome CDS5139217 552 + 0.400362
NA BF3141 RNA polymerase ECF-type sigma factorchromosome CDS3551079 513 + 0.469786
NA BF1211 putative RNA polymerase ECF-type sigma factorchromosome CDS1444195 516 - 0.408915
NA BF2714 hypothetical proteinchromosome CDS3115895 1989 - 0.486174
NA BF3479 conserved hypothetical proteinchromosome CDS3974211 411 - 0.36253
NA BF3168 conserved hypothetical proteinchromosome CDS3588894 1767 - 0.324844
NA BF3643 putative DNA-binding proteinchromosome CDS4158531 441 - 0.444444
NA BF3975 putative transcriptional regulatorchromosome CDS4540011 2193 - 0.423621
NA BF1660 ATP-dependent RNA helicase DeaDchromosome CDS1923815 1284 - 0.450935
NA BF2874 hypothetical proteinchromosome CDS3291023 759 + 0.499341
NA BF1379 transcriptional regulatorchromosome CDS1618974 843 - 0.552788
NA BF3617 putative transcriptional regulatorchromosome CDS4128535 459 + 0.422658
NA BF2702 putative acetyltransferasechromosome CDS3105365 447 - 0.422819
NA BF1617 conserved hypothetical proteinchromosome CDS1885903 207 - 0.415459
NA BF4086 putative transcriptional regulatorchromosome CDS4667475 648 - 0.432099
NA BF3485 conserved hypothetical proteinchromosome CDS3977949 861 + 0.392567
NA BF3296 MarR family transcriptional regulatorchromosome CDS3747762 441 + 0.510204
NA BF1806 putative RNA binding protein with S1 RNA-binding domainchromosome CDS2125341 2124 - 0.539077
NA BF3107 RNA polymerase ECF-type sigma factorchromosome CDS3515836 549 + 0.386157
NA BF3074 putative RNA polymerase ECF-type sigma factorchromosome CDS3479462 597 - 0.371859
NA BF0262 putative nitrogen utilization substance proteinchromosome CDS285515 1263 + 0.413302
NA BF4361 RNA polymerase sigma-54chromosome CDS4966892 1479 + 0.538878
NA BF0252 FucRchromosome CDS273848 981 + 0.378186
NA BF1045 RNA polymerase ECF-type sigma factorchromosome CDS1256956 552 + 0.447464
NA BF1761 hypothetical proteinchromosome CDS2075754 669 - 0.520179
NA BF3386 RNA polymerase ECF-type sigma factorchromosome CDS3874347 552 - 0.432971
NA BF1576 two-component system response regulatorchromosome CDS1831388 690 - 0.475362
NA BF1965 transcriptional regulatorchromosome CDS2307094 621 + 0.425121
NA BF4518 two-component system response regulatorchromosome CDS5184531 774 - 0.444444
NA BF1470 RNA polymerase ECF-type sigma factorchromosome CDS1712400 465 + 0.496774
NA BF1902 RNA polymerase ECF-type sigma factorchromosome CDS2238826 552 - 0.42029
NA BF1745 RNA polymerase ECF-type sigma factorchromosome CDS2053157 564 + 0.450355
NA BF0794 putative transcriptional regulatorchromosome CDS950863 894 + 0.412752
NA BF0939 transcriptional regulatorchromosome CDS1122775 957 + 0.424242
NA BF3490 transcription regulatorchromosome CDS3982192 840 + 0.347619
NA BF0397 conserved hypothetical proteinchromosome CDS469498 273 - 0.424908
NA BF0199 two-component system response regulatorchromosome CDS217385 678 - 0.349558
NA BF3484 conserved hypothetical proteinchromosome CDS3977399 546 + 0.404762
NA BF0899 conserved hypothetical proteinchromosome CDS1074646 1560 + 0.432692
NA BF1248 RNA polymerase ECF-type sigma factorchromosome CDS1482938 546 + 0.355311
NA BF2119 transcription regulatorchromosome CDS2465911 849 - 0.371025
NA BF0767 putative chromosome partitioning protein ParBchromosome CDS915405 891 - 0.479237
NA BF2398 conserved hypothetical proteinchromosome CDS2771482 456 + 0.370614
NA BF3769 transcriptional regulatorchromosome CDS4284252 849 - 0.385159
NA BF1639 putative RNA polymerase ECF-type sigma factorchromosome CDS1906577 522 - 0.488506
NA BF0176 conserved hypothetical proteinchromosome CDS188981 531 + 0.444444
NA BF1047 conserved hypothetical proteinchromosome CDS1257967 474 + 0.421941
NA BF0248 hypothetical proteinchromosome CDS269860 1161 + 0.347976
NA BF0555 RNA polymerase ECF-type sigma factorchromosome CDS638035 762 - 0.391076
NA BF4549 transcriptional regulatorchromosome CDS5231947 876 + 0.429224
NA BF2609 putative GNAT family acetyltransferasechromosome CDS2999633 498 + 0.433735
NA BF4068 conserved hypothetical proteinchromosome CDS4647161 366 + 0.387978
NA BF2307 hypothetical proteinchromosome CDS2682534 366 - 0.330601
NA BF1252 putative anti-sigma factorchromosome CDS1486439 966 + 0.416149
NA BF0035 hypothetical proteinchromosome CDS42932 1209 + 0.339123
NA BF1958 putative transcriptional regulatorchromosome CDS2300061 744 - 0.341398
NA BF2608 conserved hypothetical proteinchromosome CDS2999136 336 - 0.425595
NA BF2109 TetR/AcrR family transcriptional regulatorchromosome CDS2456299 612 + 0.410131
NA BF0760 transcriptional regulatorchromosome CDS905677 855 + 0.411696
NA BF0630 putative transcriptional regulatorchromosome CDS748914 1008 + 0.415675
NA BF3969 RNA polymerase ECF-type sigma factorchromosome CDS4530582 567 + 0.377425
NA BF3837 conserved hypothetical proteinchromosome CDS4377761 564 - 0.445035
NA BF0653 conserved hypothetical proteinchromosome CDS767500 315 + 0.377778
NA BF1493 transcriptional regulatorchromosome CDS1738970 840 - 0.472619
NA BF2828 putative transcriptional regulatorchromosome CDS3235737 777 - 0.350064
NA BF1760 transcriptional regulatorchromosome CDS2074265 1176 - 0.411565
NA BF0641 hypothetical proteinchromosome CDS760827 426 - 0.319249
NA BF4327 putative RNA polymerase ECF-type sigma factorchromosome CDS4925631 561 + 0.406417
NA BF3365 two-component system response regulatorchromosome CDS3844594 738 - 0.449865
NA BF3991 transcriptional regulatorchromosome CDS4561856 366 + 0.407104
NA BF3236 hypothetical proteinchromosome CDS3671374 900 - 0.428889
NA BF0584 RNA polymerase ECF-type sigma factorchromosome CDS680184 564 + 0.39539
NA BF1391 putative transcriptional regulatorchromosome CDS1626652 615 - 0.450406
NA BF0241 RNA polymerase ECF-type sigma factorchromosome CDS265269 510 + 0.396078
NA BF3480 putative transcriptional regulatorchromosome CDS3974684 1134 - 0.330688
NA BF2840 hypothetical proteinchromosome CDS3248537 447 + 0.402685
NA BF1722 putative outer membrane protein probably involved in nutrient bindingchromosome CDS2006097 3324 + 0.39651
NA BF0914 conserved hypothetical proteinchromosome CDS1090758 921 - 0.476656
NA BF1192 hypothetical proteinchromosome CDS1427798 366 - 0.327869
NA BF3821 putative GNAT family acetyltransferasechromosome CDS4358994 456 - 0.381579
NA BF1521 hypothetical proteinchromosome CDS1771658 309 + 0.372168
NA BF4003 conserved hypothetical proteinchromosome CDS4574739 861 + 0.493612
NA BF1060 RNA polymerase ECF-type sigma factorchromosome CDS1275039 576 - 0.399306
NA BF1703 putative transcriptional regulatorchromosome CDS1976060 531 + 0.416196
NA BF1147 putative transcriptional regulatorchromosome CDS1381926 321 + 0.461059
NA BF4573 RNA polymerase ECF-type sigma factorchromosome CDS5256884 486 + 0.45679
NA BF0089 two-component system response regulatorchromosome CDS99229 756 + 0.399471
NA BF3791 RNA polymerase ECF-type sigma factorchromosome CDS4321125 579 - 0.343696
NA BF0038 hypothetical proteinchromosome CDS45841 162 + 0.320988
NA BFp0025 conserved hypothetical proteinpBFY46 CDS18258 315 + 0.393651
NA BF2056 putative transcriptional regulatorchromosome CDS2408139 591 - 0.367174
NA BF1408 transcriptional regulatorchromosome CDS1644376 678 - 0.435103
NA BF3736 transcriptional regulatorchromosome CDS4244261 477 - 0.446541
NA BF2660 putative two-component system response regulatorchromosome CDS3061598 366 + 0.374317
NA BF0898 conserved hypothetical proteinchromosome CDS1074262 366 + 0.385246
NA BFp0037 putative phage related transcriptional regulatorpBFY46 CDS27893 429 + 0.305361