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2024-05-07 15:23:30

Gene list

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COG category: Transcription
Organism: Symbiobacterium thermophilum, IAM14863

Number of genes found: 200

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Symbiobacterium thermophilum, IAM14863
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA STH1318 LysR family transcriptional regulatorchromosome CDS1461771 900 + 0.708889
NA STH602 putative glucose kinasechromosome CDS652141 927 + 0.742179
NA STH155 conserved hypothetical proteinchromosome CDS178779 375 + 0.645333
NA STH2302 conserved hypothetical proteinchromosome CDS2483708 519 - 0.722543
NA STH2043 RNA polymerase ECF-type sigma factorchromosome CDS2181857 549 + 0.684882
NA STH1644 transcriptional repressorchromosome CDS1789751 1212 + 0.712046
NA STH2072 AraC family transcriptional regulatorchromosome CDS2209424 891 + 0.680135
NA STH2470 putative acetyltransferasechromosome CDS2655036 465 - 0.754839
NA STH3125 transcriptional regulatorchromosome CDS3324932 480 - 0.666667
NA STH2604 LysR-family transcriptional regulatorchromosome CDS2795456 876 + 0.736301
NA STH1883 LytR family transcriptional regulatorchromosome CDS2023596 1464 - 0.697404
NA STH2487 TetR/AcrR family transcriptional regulatorchromosome CDS2669181 672 - 0.733631
NA STH1744 putative transcription elongation factorchromosome CDS1890398 465 - 0.670968
NA STH3168 S-layer associated protein, putataivechromosome CDS3373009 3306 - 0.699335
NA STH921 two-component response regulatorchromosome CDS1041136 693 + 0.672439
NA STH1627 BlaI family transcriptional regulatorchromosome CDS1769079 411 + 0.698297
NA STH2676 LysR family transcriptional regulatorchromosome CDS2865059 897 + 0.649944
NA STH1173 MarR family transcriptional regulatorchromosome CDS1305185 459 + 0.694989
NA STH106 LysR family transcriptional regulatorchromosome CDS124360 912 - 0.698465
NA STH3273 TetR family transcriptional regulatorchromosome CDS3492832 633 + 0.674566
NA STH731 two-component response regulatorchromosome CDS815065 696 - 0.688218
NA STH29 transmembrane proteinchromosome CDS38379 792 + 0.69697
NA STH2754 class I aminotransferase proteinchromosome CDS2972950 1470 - 0.719728
NA STH770 LacI family transcriptional repressorchromosome CDS867770 1011 + 0.721068
NA STH1458 MerR family transcriptional regulatorchromosome CDS1601178 765 - 0.669281
NA STH2795 RNA polymerase ECF-type sigma factorchromosome CDS3010345 567 - 0.708995
NA STH2017 MarR family transcriptional regulatorchromosome CDS2160439 465 - 0.683871
NA STH181 RNA polymerase ECF-type sigma factorchromosome CDS208062 627 + 0.660287
NA STH2670 Snf2 family helicase-like proteinchromosome CDS2860082 1500 + 0.706
NA STH1176 MarR family transcriptional regulatorchromosome CDS1307511 447 + 0.695749
NA STH2459 LysR family transcriptional regulatorchromosome CDS2645284 900 + 0.684444
NA STH3096 two-component response regulatorchromosome CDS3296671 636 - 0.685535
NA STH502 heat-inducible transcriptional repressorchromosome CDS542984 1026 + 0.664717
NA STH3015 TetR family transcriptional regulatorchromosome CDS3235068 639 - 0.649452
NA STH2928 ribosomal protein S1-like RNA-binding domainchromosome CDS3155485 2295 - 0.694553
NA STH673 conserved hypothetical proteinchromosome CDS741267 555 - 0.668468
NA STH3220 two-component response regulatorchromosome CDS3434840 612 - 0.637255
NA STH3136 transcriptional repressor of class III stress geneschromosome CDS3337321 456 - 0.662281
NA STH415 two-component response regulatorchromosome CDS451634 687 + 0.681223
NA STH2140 two-component response regulatorchromosome CDS2287760 594 + 0.700337
NA STH2420 putative acetyltransferasechromosome CDS2603704 498 - 0.656627
NA STH2606 putative acetyltransferasechromosome CDS2797956 981 + 0.734964
NA STH2336 putative transcriptional regulatorchromosome CDS2524008 735 - 0.704762
NA STH410 ArsR family transcriptional regulatorchromosome CDS446036 300 - 0.59
NA STH2227 conserved hypothetical proteinchromosome CDS2394060 531 - 0.704331
NA STH2419 putative acetyltransferasechromosome CDS2602978 498 - 0.680723
NA STH31 sigma-54-dependent transcriptional regulator variantchromosome CDS40213 1317 + 0.730448
NA STH339 ribonulease Rchromosome CDS375878 2505 + 0.702994
NA STH2353 conserved domain proteinchromosome CDS2541991 1836 - 0.751089
NA STH2728 two-component response regulatorchromosome CDS2929890 633 - 0.665087
NA STH1767 LysR family transcriptional regulatorchromosome CDS1912093 936 - 0.685897
NA STH2740 ATP-dependent helicasechromosome CDS2944650 1971 - 0.70827
NA STH211 transcriptional regulatory protein, repressor-typechromosome CDS235680 858 + 0.702797
NA STH2693 MarR family transcriptional regulatorchromosome CDS2882936 501 + 0.648703
NA STH2011 transcriptional regulatorchromosome CDS2152356 462 + 0.647186
NA STH1945 hypothetical protein, glycine-richchromosome CDS2086532 444 - 0.777027
NA STH1177 transcriptional regulatorchromosome CDS1308027 690 - 0.678261
NA STH2391 putative transcriptional regulatorchromosome CDS2575656 441 - 0.680272
NA STH2076 putative transcriptional regulatorchromosome CDS2212183 537 - 0.696462
NA STH2762 Sir2 family transcriptional regulatorchromosome CDS2981552 756 - 0.69709
NA STH341 MarR family transcriptional regulatorchromosome CDS379683 450 + 0.644444
NA STH1529 RNA polymerase ECF-type sigma factorchromosome CDS1666995 510 + 0.711765
NA STH2046 two-component response regulator variantchromosome CDS2184245 648 + 0.726852
NA STH1453 ribonuclease IIIchromosome CDS1594919 708 + 0.731638
NA STH3332 ParBc, ParB-like nuclease domainchromosome CDS3557408 897 - 0.683389
NA STH649 two-component response regulatorchromosome CDS703203 645 - 0.689922
NA STH845 RNA polymerase ECF-type sigma factorchromosome CDS956375 627 + 0.614035
NA STH1023 two-component response regulatorchromosome CDS1137326 621 + 0.721417
NA STH3183 putative transcriptional regulator similar to Bvg accessory factorchromosome CDS3391805 807 - 0.695167
NA STH2761 conserved hypothetical proteinchromosome CDS2980961 453 - 0.644592
NA STH1275 NifA family transcriptional regulatorchromosome CDS1412575 2751 + 0.718284
NA STH2348 GntR family transcriptional regulatorchromosome CDS2536255 783 + 0.740741
NA STH1444 putative acetyltransferasechromosome CDS1587237 489 - 0.705521
NA STH1175 RNA polymerase ECF-type sigma factorchromosome CDS1306581 555 - 0.675676
NA STH2506 two-component response regulatorchromosome CDS2691403 702 - 0.665242
NA STH2184 MerR family transcriptional regulatorchromosome CDS2339889 729 - 0.685871
NA STH351 BglG family transcription antiterminatorchromosome CDS387507 828 - 0.672705
NA STH750 two-component response regulator, probably involved in phosphate sensingchromosome CDS835459 708 - 0.694915
NA STH1484 transcriptional repressorchromosome CDS1623750 759 + 0.650856
NA STH2885 sigma-54-dependent transcriptional regulatorchromosome CDS3109627 987 + 0.70922
NA STH2572 conserved domain proteinchromosome CDS2757594 462 + 0.71645
NA STH644 sigma-54-dependent transcriptional regulatorchromosome CDS696356 1413 - 0.732484
NA STH1713 ATP-dependent DNA helicasechromosome CDS1859210 2877 + 0.713938
NA STH2007 two-component response regulatorchromosome CDS2147902 690 - 0.701449
NA STH2437 GTP pyrophosphokinasechromosome CDS2620432 2208 - 0.654438
NA STH2646 GNAT family acetyltransferasechromosome CDS2839245 807 - 0.718711
NA STH2113 conserved domain proteinchromosome CDS2255516 855 + 0.702924
NA STH1831 transcriptional regulatorchromosome CDS1976310 2064 - 0.696705
NA STH1893 transcriptional regulatorchromosome CDS2036763 951 + 0.719243
NA STH701 sigma-54-dependent transcriptional regulatorchromosome CDS771303 1398 - 0.732475
NA STH2189 TetR family transcriptional regulatorchromosome CDS2344546 810 + 0.723457
NA STH1158 putative transcriptional regulatorchromosome CDS1288818 966 - 0.698758
NA STH2447 conserved hypothetical proteinchromosome CDS2634097 705 - 0.723404
NA STH449 putative acetyltransferase GNAT familychromosome CDS488276 519 + 0.728324
NA STH28 RNA polymerase ECF-type sigma factorchromosome CDS37868 522 + 0.693487
NA STH1836 transcriptional regulatorchromosome CDS1983161 453 - 0.690949
NA STH1384 ATP-dependent DNA helicasechromosome CDS1531012 2130 + 0.713146
NA STH241 LysR family transcriptional regulatorchromosome CDS267846 918 - 0.678649
NA STH1301 conserved domain proteinchromosome CDS1437534 720 - 0.613889
NA STH2538 transcriptional regulatorchromosome CDS2722174 711 - 0.746835
NA STH2673 GntR family transcriptional regulatorchromosome CDS2862446 957 + 0.753396
NA STH2343 LacI family transcriptional repressorchromosome CDS2530900 1011 - 0.641939
NA STH2339 putative glucose kinasechromosome CDS2526234 921 - 0.652552
NA STH25 two-component response regulator variantchromosome CDS36556 420 + 0.65
NA STH2117 LysR family transcriptional regulatorchromosome CDS2259648 822 + 0.718978
NA STH2370 ArsR family transcriptional regulatorchromosome CDS2559799 318 - 0.644654
NA STH1520 conserved hypothetical proteinchromosome CDS1658627 276 + 0.666667
NA STH563 GntR family transcriptional regulatorchromosome CDS604501 729 - 0.647462
NA STH2677 RNA polymerase ECF-type sigma factorchromosome CDS2866161 597 + 0.654941
NA STH593 MerR family transcriptional regulatorchromosome CDS644153 465 - 0.649462
NA STH2962 RNA polymerase ECF-type sigma factorchromosome CDS3183645 612 + 0.696078
NA STH2635 two-component response regulatorchromosome CDS2829556 675 + 0.721482
NA STH1802 conserved hypothetical proteinchromosome CDS1944552 660 - 0.710606
NA STH2911 TetR family transcriptional regulator?chromosome CDS3138295 597 + 0.686767
NA STH3308 two-component response regulatorchromosome CDS3534680 705 - 0.648227
NA STH97 GntR family transcriptional regulatorchromosome CDS116588 708 - 0.711864
NA STH2316 GntR family transcriptional regulatorchromosome CDS2502159 969 - 0.717234
NA STH2935 conserved hypothetical proteinchromosome CDS3160559 219 - 0.643836
NA STH1626 ArsR family transcriptional regulatorchromosome CDS1768479 342 - 0.657895
NA STH169 RNA polymerase ECF-type sigma factorchromosome CDS197820 633 + 0.669826
NA STH793 DeoR-family transcriptional regulatorchromosome CDS889852 783 + 0.701149
NA STH1070 acetyltransferasechromosome CDS1183227 441 + 0.732426
NA STH2631 GntR family transcriptional regulatorchromosome CDS2824132 642 - 0.718069
NA STH3111 conserved hypothetical proteinchromosome CDS3312146 462 - 0.67316
NA STH492 two-component response regulatorchromosome CDS533611 597 - 0.686767
NA STH2610 conserved domain proteinchromosome CDS2802132 957 + 0.705329
NA STH165 conserved hypothetical proteinchromosome CDS191610 306 + 0.647059
NA STH987 two-component response regulatorchromosome CDS1105651 771 + 0.623865
NA STH3290 two-component response regulator, CheY-likechromosome CDS3514664 699 - 0.723891
NA STH2427 MarR family transcriptional regulatorchromosome CDS2611656 435 - 0.68046
NA STH1041 two-component response regulatorchromosome CDS1160779 705 + 0.679433
NA STH1167 putative acetyltransferasechromosome CDS1298846 483 + 0.712215
NA STH1162 RNA polymerase sigma factorchromosome CDS1292159 756 + 0.691799
NA STH3184 putative transcriptional regulator similar to Bvg accessory factorchromosome CDS3392615 795 - 0.674214
NA STH2251 hypothetical proteinchromosome CDS2416064 1221 - 0.683866
NA STH1849 transcription termination factorchromosome CDS1994276 462 - 0.679654
NA STH961 TetR family transcriptional regulatorchromosome CDS1078831 624 - 0.714744
NA STH2614 RNA polymerase ECF-type sigma factorchromosome CDS2808174 612 + 0.718954
NA STH2328 putative PadR family transcriptional regulatorchromosome CDS2515137 336 + 0.71131
NA STH628 transcriptional antiterminator of glycerol uptake operonchromosome CDS677965 633 + 0.739336
NA STH846 hypothetical proteinchromosome CDS956991 1203 + 0.693267
NA STH2547 putative transcriptional regulatorchromosome CDS2733472 624 + 0.689103
NA STH2491 conserved hypothetical proteinchromosome CDS2673267 1218 - 0.705254
NA STH210 transcriptional regulatory proteinchromosome CDS234876 627 + 0.669856
NA STH2298 DeoR-family transcriptional regulatorchromosome CDS2479012 771 + 0.693904
NA STH657 SNF2 family helicasechromosome CDS712377 2970 - 0.738721
NA STH438 sigma-54-dependent transcriptional regulatorchromosome CDS472522 1440 + 0.706944
NA STH1051 RNA polymerase ECF-type sigma factorchromosome CDS1167178 603 + 0.694859
NA STH3162 two-component response regulatorchromosome CDS3359329 666 - 0.68018
NA STH2963 transcriptional regulatorchromosome CDS3184256 591 + 0.678511
NA STH2471 putative acetyltransferasechromosome CDS2655766 471 + 0.696391
NA STH923 two-component response regulatorchromosome CDS1042410 657 + 0.625571
NA STH1152 RNA polymerase ECF-type sigma factorchromosome CDS1282646 645 + 0.744186
NA STH1973 putative acetyltransferasechromosome CDS2111892 444 + 0.709459
NA STH2002 conserved hypothetical proteinchromosome CDS2142304 309 + 0.731392
NA STH2255 TetR family transcriptional regulatorchromosome CDS2421906 648 - 0.692901
NA STH2528 RNA polymerase ECF-type sigma factorchromosome CDS2713869 552 - 0.657609
NA STH1600 putative transcriptional regulatorchromosome CDS1740834 1461 + 0.715264
NA STH907 RNA polymerase ECF-type sigma factorchromosome CDS1026967 561 + 0.647059
NA STH2033 conserved hypothetical proteinchromosome CDS2173551 729 - 0.702332
NA STH556 putative transcriptional antiterminatorchromosome CDS597737 378 - 0.679894
NA STH2803 conserved hypothetical proteinchromosome CDS3015729 357 - 0.739496
NA STH239 RNA polymerase sigma-54 factorchromosome CDS265955 1359 + 0.706402
NA STH1332 fibronectin-binding proteinchromosome CDS1475039 1869 - 0.708935
NA STH2781 transcriptional regulatorchromosome CDS2999013 669 - 0.666667
NA STH2149 ArsR family transcriptional regulatorchromosome CDS2293719 390 - 0.705128
NA STH3091 transcriptional antiterminatorchromosome CDS3292230 531 - 0.617702
NA STH3031 RNA polymerase ECF-type sigma factorchromosome CDS3249562 531 + 0.709981
NA STH1647 ATP-dependent RNA helicasechromosome CDS1792701 1581 + 0.675522
NA STH2902 RNA polymerase ECF-type sigma factor variantchromosome CDS3126051 1488 - 0.694892
NA STH3214 two-component response regulatorchromosome CDS3428314 711 - 0.679325
NA STH690 two-component response regulatorchromosome CDS758861 678 + 0.69174
NA STH2290 hypothetical proteinchromosome CDS2467612 489 - 0.654397
NA STH1741 RNA polymerase ECF-type sigma factorchromosome CDS1887996 531 - 0.677966
NA STH1402 conserved domain proteinchromosome CDS1546991 129 - 0.697674
NA STH2753 transcriptional repressorchromosome CDS2971548 1176 - 0.717687
NA STH2514 putative acetyltransferasechromosome CDS2699593 474 - 0.698312
abrB STH3253 sporulation-related transcriptional regulator AbrBchromosome CDS3473401 270 + 0.559259
flgM STH2982 anti-sigma factor FlgMchromosome CDS3203721 300 - 0.72
fliA STH2984 RNA polymerase sigma factor related to flagellar biosynthesischromosome CDS3205197 762 - 0.711286
gerXA STH2452 spore germination protein KAchromosome CDS2639024 1704 + 0.689554
greA1 STH480 transcription elongation factorchromosome CDS518180 483 + 0.627329
greA2 STH3157 transcription elongation factorchromosome CDS3354272 474 - 0.635021
lexA STH1736 transcriptional repressor of the SOS regulonchromosome CDS1884880 618 + 0.66343
mfd STH3235 transcription-repair coupling factorchromosome CDS3448780 3732 - 0.701233
nusA STH1519 transcriptional termination-antitermination factorchromosome CDS1657471 1083 + 0.66482
rpoA STH3047 RNA polymerase alpha subunitchromosome CDS3260310 948 - 0.623418
rpoB STH3085 RNA polymerase beta subunitchromosome CDS3285098 3753 - 0.67093
rpoC STH3084 RNA polymerase beta' subunitchromosome CDS3281542 3540 - 0.667797
rpoD STH588 RNA polymerase major sigma factorchromosome CDS635488 1167 + 0.660668
rpoE STH39 RNA polymerase delta subunitchromosome CDS49305 480 + 0.625
rpoZ STH1340 RNA polymerase omega subunitchromosome CDS1485391 210 + 0.619048
sigK STH1958 RNA polymerase sigma factor similar to B. subtilis SigKchromosome CDS2097918 711 - 0.624473
spo0H STH3113 stage 0 sporulation protein H, RNA polymerase sigma factorchromosome CDS3313667 666 - 0.57958
spoIIAC STH1812 RNA polymerase sigma factor similar to B. subtilis sporulation-specific sigma-Fchromosome CDS1957001 768 - 0.713542
spoIIE STH3200 stage II sporulation protein Echromosome CDS3411441 2310 - 0.736364
spoIIGB STH1221 RNA polymerase sigma factor similar to B. subtilis SigEchromosome CDS1358858 756 + 0.624339
spoIIID STH103 stage III sporulation protein Dchromosome CDS122663 249 + 0.626506
spoIIIG STH1222 RNA polymerase sigma factor similar to B. subtilis SigGchromosome CDS1359746 771 + 0.627756
spoVT STH3234 stage V sprulation protein Tchromosome CDS3448006 561 - 0.613191