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# Nitrosomonas europaea ATCC 19718, ATCC 19718

>NE0937 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding
MNTHSLVPNYGISARQCYEPIRVLIVDDHIDLISNVFAYLENKNFILDAA
RDGESALELSSNGQYDVLILDWMLPRLNGLQVLQRLRAADVDTPTLILTA
KSDIPDKLSGFAAGADDYLTKPFLIAELEARILALHTRRIGRAKILRVGS
LIYHLTSQQVMRDGSIIHLHSGSRKLLQVLMRESPNVVTKDRLESLLWGE
DRPDRDLLRTHIYELRKSIDGDYPLKFVQTVPKVGYRIVDPELGP
>NE0729 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MNPSFQARILILEDNASLVANLFAYLEPRGYLLDAAQDGLAGLTLAQQGN
YHALIIDWGLPTKEGVDVIRALRARDCHIPILMLTARDDLDDKISGFRAG
ADDYLIKPFAFAELEVRIEALLARSRGRRRKLTVGDLSFDLDTQHIWRGS
RQIQLSASERRLLEVLMRASPSVVSRPELEETLWGDEPPEGNVLRSHMYE
LRRAVDGEQEEKLLHTLRCVGYRLAVQEQN
>NE0533 putative sigma-70 factor, ECF subfamily
MCADCFRFYFSKAISMQESSAADTGTAVIDALYREHHRWLLMWLRKKLGC
PQNAADLSHDTFVRLLSLQEMPVLREPRAYLLVTANRLMINLNRKHKVEA
ETLHSIAALLSERTEQDVAHVAAVRQLLEATVLMLIDGLDERSRQAFLLA
RVEDMTYAEIAETMQVSISRVKQYLVKALAYCHVHLHQLKEDVCLK
>NE2514 conserved hypothetical protein
MSNEQLADLTQPQRDRLAFIELRLRFIGEIRRQDLVSRFGIQAAAATRDI
GIYKDLAPGNLDYDTKNKVYGYADGFTPVFDFPAERVLAWLSQGFGDGEP
SALKSWITCEIPSRLTKPGLDTLACVTRAIHQERPLKVTYHSLSSGETER
EIVPFALIDNGLRWHVRAFDRRSKDFRDFVITRMQRSVMLKDSHVLPHEK
SDQDIQWTRIVELELVPHPDQPRPEIAEMDYGMTGGMVKMKLRAATAGYI
LRKWSVDCSADHSLRGPEYRLWLKDHLALYGVKNAVLAPGYAPLDAARAV
ADCD
>NE0917 probable RNA polymerase sigma factor transcription regulator
MQDEHAALDIVQDSMMKLVEKYPHKSLTELPLLFQRILQNTIRDFYRRQK
SRSLWVTLFSSFMPDSNEKETGYSDIPESLPVAQDFGYKNNPGTAAEQSE
LIELISKALETLPPRQREAFLLRYWEEMDVAETAKIMDCSEGSVKTHCSR
AAHTLAALLESKGVKR
>NE1524 conserved hypothetical protein
MYKLRFFADFCLELTASLTFFRGSLASISCFTADYRYGDMTMATVRKTIS
LTNQQDAWITAQVEAGRFTNDSELIRDLIRREQERMAEIDNIRAALIDGE
QSGEPQPFDFDQFKRHKLAQHKPG
>NE1668 DUF179
MKPEANSYLFQDGVIVMQSINLTDHFLIAMPGLEDSFFARTLTYICEHSE
RGALGLVVNRPTDLSVENLLLQLGMFPKGTASSNLPVLLGGPVQIDSGFV
LHEPVGSWKFTLSSNESIGLTSSADILQAVADCEGPKRMLIALGYSGWAA
GQLEQELAQNAWLTVPAESQILFELSSEERLPAAMKLLGIDFCNLSSEVG
HA
>NE1946 Bacterial regulatory proteins, TetR family
MLTTMAEKISVEEKILQTARRLFCQVGIHATGIARIIEESGVSRRSLYTH
YGSKENLLKAVFEAEANIWFRWFDCDLPQMECSPTERILALFDLMRDWFD
SKNFYGCVFINAVAEHEKSNGWIQEVANSHREKITAKLQAMVAASGAQNP
EMVTEKLNLLIDGTIVTAMVTANSEIAHIGKLAAGDILRNAQ
>NE1519 conserved hypothetical protein
MKLFKSIPNPKEIRQKLGLNQHEFWSKVGVTQSGGSRYESGREMPKAVRE
LLRLVHIEHIDLTKIKRDDLIVAAMLKAQYPDLYKNLKKSAKQLK
>NE0514 possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MSRILIVEDEPRLARLEADYLQHAGFQTHCLSQGLEVIPWLKENTVELIL
LDLMVPGRDGLDICRDIRSFSQVPVIIVTARIEEIDRLLGLEMGADDYIC
KPFSPREMVARVKAVLRRLQPPAPNSAQQALTLSPQSFKVQYDGREIELT
AVEFQLLYTLYQQPGRIFSRARLMDLIYQDQRIVSDRTIDSHIKKLRKKI
AELIPEKEVICSVYGAGYRYDPQSVEPEE
>NE0667 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MMSTMRVLVADDHEETLNFIRRGLTQAGHIVSTVDNGREALFRATEESYD
AIVLDRMLPGLDGLSILKMLRAGGIRTPVLLLTAMTRIADRVEGLENGAD
DYLVKPFAFSELHARLNVIIRRPAVLEPETSLRVLDIELDLGKRIARRGG
RRIDLQPRELLMLEVLLRNPHRVMTKTMLLERVWDFDFDPQTNIVETHIS
RLRAKLNADFDQDAIITVRGAGYMIRSE
>NE0541 Sigma factor, ECF subfamily
MTITYSGDELFLQLRGDLLNYLCRKLSKDEAADILQEIYLRWRRQDISSI
ENPRAFLFTVALNLIRDQARRQAHVQTYANTMQHLFQDKPADYDLAQHCD
ERRQIEYLQQALDQLPENVRHAFLLFRLDGLTFAEIALQMGISSKSVARY
IQHASEHCLTALAQYR
>NE0189 Helix-turn-helix motif
MPMTEKELKERDAKRDLGAELLESVVQMKSGHAGRIHKVEISPVTAARLK
SGLSQADFARLLGVSIRTLQDWEQGRRQPSGAARTLITIAERRPDVLKEI
TL
>NE1580 Helix-turn-helix protein, CopG family
MSQTKVAITIEEEVLARVDALVRQRVFANRSRAIQEAVQEKLERMDRSRL
AEECAKLDPAFEKAMADEGLSEELVAWPKY
>NE0547 Sigma factor, ECF subfamily
MPAGLSLRQFVAFHPYGKHSIIMLFLAHYALLSMTTSCTNDELFLQLRND
LLNFLYRKVGRDEAADMVQEVYLRWRKQDVSSIENPRAFLFTVALNLIRD
SSRQQIRVDKHTTEIQNFFEIGNAADDPARRYDGQRQLASLLHALNQLPE
PVGHAFLLFRYDGMTHAQIAKQLGVSSKTVERYIQRAGEHCLAILAEYR
>NE2138 Sigma factor, ECF subfamily
MSSSDSPVFTTFYKQYQSQLISRITRLVGCRETAADLAQEAYIRLLGHRD
LSNILSLSAYLFRIGHNLAMDHQRDPANKIEYLLLDETLPCPLLQPHEIV
SLRQQCRLLLDTIASMPQGCRDVFLLRKIDGLSYSEISIRLNISEKTVQR
RLVQAMLRCHRSMNQIVIR
>NE1114 Bacterial regulatory proteins, TetR family
MPGKTREDSQRTRDTILDAAEQVILCKGMGRTTMGDIAHAANVSRGAVYG
HYKNKIDLSIAMCERAFASMEIPVRIKGESALQTLYREGIYLLRLYSEPG
PVQRVLHILYLKCDESEDHLALLDIRNEWEAQRMADTEELIIEAVANAEL
PQTTDIKLANLYLHSLVDGIYSTLFCTNRVPEHKWEIAEKLYQAGFAGLK
TLEN
>NE1041 possible sigma-70 factor, ECF subfamily
MMLLPTSCRKHTRLLALQQAGQHITESRALLYRIARNLVIDRYRRGQVQG
WTTDNHSLENFPAQRACEPDALVASSQVLQAVLTTIDALPLRCREAFILH
RFDGLSHSEVAEHMGISRKAVEQHIQHAMQVIRRCRMQMEGDTDTSGSCL
ATQKKRV
>NE1217 putative sigma-70 factor, ECF subfamily
MCSTDSSKDIVPTADSAMQQVYFLYSDHHDWLYSWLRHRLGNAADAADLA
HDAFLRLIIKPAPRGFANFGEARAYLRTMAQGMCINLWHRREIERAWLDT
LAAWPEALAPSPERQVMVLEALHEIGTMLLDLPPKAARAFLMAAACQMTD
KEVAEALGVSSRMVRKYGFP
>NE0443 hypothetical protein
MTDDQPDLSAEPEEDELLLGKVDSMLHRHRREQSSLMQSSEQTVAKLDDP
GEMLPAEVGPVEVPQNDESVSSEVDGIPVLTEQVTLVLDEWPSQSEISEL
LYFAFDAALRETSIHLDPAERLTLIQALGKRLPKNL
>NE0383 conserved hypothetical protein
MIEFTALDDLSLLRESVSLECKLAQGRDGKGALPDDFWPTYSAMANTDGG
IVILGVRERKGQFEVAGIENPDKLRTELFNHLNNRQKVSVNLLRDEDVRA
WPVEGKTLLVVEIPRARRQQRPVYLRGNPLGGHTYRRLHEGDRPLPDEDV
KRMLAEQVEDSRDERILPGYGLDDLHLESLRAYRQLFANRDPSHPWNALA
DQAFLRQIGGWRQHRETGEAGLTLAGLLMFGQWSSITEAVPLCFLDYQER
PADYATTVQWLDRIVPDGTWSGNVFDFYRRVVGKLTADIKVPFVLKGDIR
QDDTPTHKALREALVNTLVHADYTGRISVLVVKEPAGFVLRNPGGLRVPA
QQALQGGMSDCRNRTMQQMFLMIGLGERAGSGMSRIVHGWRDLGHELHLR
ESYEPHEHSVLEMFWAKGRGATLASESSEESSEESSEETGKKILHLLREE
PSLTASALARRLQLTPRAIEKQLAKLKAQKRLRRIGPNKGGHWEVGE
>NE1452 Uncharacterized protein family UPF0074
MRLTTKGRFAVTALLDIAIRHGNGPVALADISERQRISLSYLEQLFAKLR
QRKLVDSVRGPGGGYCLAKGLDEVSVADIILAVDEPIDSTQCGGKENCLG
DSKCMTHDLWAKLNEIIFDYLGHVTLKRLVEEQSQRELQRELQREQAVVK
LYDMREAAF
>NE0300 Bacterial regulatory proteins, TetR family
MTINNDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE
KDELIDAWFDRADSRMLKEAESAGFLDLVASERIHHLIMIWLDALAVQRK
VTRQMIMSKLEFGHIHIQIPAVMRVSRTVQWVREAAQRDATFMRRALEES
TLTTIYLMTFFFWMRDESENSRHTRQFLKRHLTMAAWLGQKVYGKDPEKS
TVPHKQQIPLQFD
>NE1587 Helix-turn-helix motif
MDIKPIRTDTDYRTALKEVEMLMTAEPNTPEGDKLDILVTLIEAYEQKHF
PLDLPDPVEAIKFEMEQKGLTVKDLEPMIGKSNRVYEVLNRKRSLTLRMI
QRLHHELGIPAESLIKRSSYTHI
>NE1311 Helix-turn-helix motif
MMSSIRTTEQLGDALRAARKQLGLTQPQLALAAGVGVRFIVDLEAGKPTL
RLENVLRVIDALGGALQITGLSSSDSENHPEGNQHGA
>NE1071 probable sigma-70 factor, ECF subfamily
MCMTDDEEGAVPATDLAAHRIHVLYTDHHGWLYGWLRCKLGNACDAADLA
HDTFLRVMASQRMPVHLGEEPRALLTHIAKGLVIDHWRRQDVERAYLEAL
AHLPETEIPSPETRLLILEALCRIETMLRGLPVRTRDIFLLAQLDGLTYR
QIADQTGFSLITIKRHMRTAFVACLMLD
>NE1625 Ribonuclease II domain
MVNVFYEEAGALKVGSILTDNTTSLQIESAHGKRSKIKAALVLLRFENPP
MHGFMQQAQEKAADIDVNFLWECCEENREFTGQELAGDYFGHTPDPLETA
AILILLSQNPIYFHKKGVGRFKAAPPEILQAALASREKKRLAEEKQAGYV
QQLMAFELPDTFRPLLDDLLYKPDKNTIEWKALETACDATRLSVPRLLER
CGAIPSTHDYHYNQFLYEHFPEGIDTDAYPADFHLLDPEDLPVAGVKAFS
IDDATTTEIDDAFSVTPLNFGSFRIGIHIATPALGVAPHSLLDKFAAKRL
STVYLPGRKITMLPESVIQHFTLGEAHHRPVLSLYLEVADDFTVTRTFSR
IETIEVSTNLRLDSLERQFNEITLRENQTDYPFAHELRLLWNFSCKMEKL
RGKDQDINSEKIDYSFIIDQDRVSVYERRRGAPIDKVVSELMIFANAEWG
KQLADAGYAGIYRSQGNGKVKMSLSPAPHQGLGVSQYAWSSSPMRRYVDL
INQRQLIALVSGNPPPYTREDDTLLIAMRDFEMAYATYAEFQRGMERYWC
LRWLLQENISTSGAIVIKENMIKLDRLPLIVRIPSLPELAPGTLVAVGVS
QIDLIDRSLNASFLGKSEG
>NE1617 Sigma factor, ECF subfamily
MHSRDHQEDVAPAANPAMQQVHFLYSDHHNWLYGWLRFRLGDAADLAHDT
FVRLIARPRCFDSSQEARAYLRTIANGLCIDLWRHREIERAWLETLATQP
EAYAPSAEEQTAVLQALHEIDGMLRHLPLKAARAFVLAMACGMTHQEVAR
ELGVSSRMVGHYITRAMLHCMQLEARNLGQAGAIAP
>NE1086 probable sigma-70 factor, ECF subfamily
MTIQNPENSLASCSIESLYCHHHKWLVGWLRRRLSNALQAPDLAHDIFLR
ILSKDSLPVIHEPRALLTTIAQGIVANFHRHQRIEQAYLDALAQIPESLA
PSPEAQAIMLETLVEIDALLDGMPPLVRKVFLLSQIDGLRQSEIAQRCGI
SVPTVKRYVAKALEQCCFIG
>NE2377 BolA-like protein
MVTAESIEHSIKATLPCTWIRVEGDDGHHFSAVIVSESFQGKSIVGQHQL
VYQALGERMREEIHALSMKTYTPEQWEAARTSN
>NE2544 Helix-turn-helix motif
MYAAYQTNGPARPIARTAAFTKEDDLLVDMARQNNLRGRILTYCVAGTFG
LLSPNYLHASAATANWDINQIEISGLSESSVGAISESARDIAHIRAVTKI
SVSELSRVFGVSRQAVHEWIKGGTLSQRNAQRLSELARATDVFIEAEIEA
SPQVFRRKIAGGQSILDAVRENGNAVELAKTLAATLVRESQQRQRLAARL
AGRSATPGTSTEFGSPHLDEDA
>NE1544 Bacterial regulatory protein, LysR family
MDRFENMNAFVRVVETGSISAAADRMDIAKSVVSRRLKELEEHLGVELFH
RTTRQMNLTDSGRAFYQQSVRILADVLEAEHATSQFHGRLKGHLKVAVPL
SFGLMHLGAAISTFLQTHPDIEFDLDFNDRQVDLLAEGFDLAIRIANLPD
SSLIARRLAPIQAVMCASPAYLERMGTPQAPEELIRHRCLVYNLVSHSDN
WNVYGTTGELIKTRIIPYLKASNGEFLRDAAVDGLGIVLLPTFIVYREIQ
RGALIPILTGYHYAQLAAYAIYPQTRHLSQRVRAFVDFLSQRFEGMPYWD
ACLNQ
>NE1821 conserved hypothetical protein
MRLDLSEKYHTKTLGPRSAQLITELHELRKSTFTVADVRTITGLSPTAAR
TLVHKARQRGLVTRLKPGLYNLVPFELGRATEHVDSPYLIARELAGEASY
FLSHGTAFELHRMVTQPNFTVYVSCTRRVRPQTVGGYDFRFVHVTPEQVF
GVTKHWIDKERFVAISDIERTILDGLRHPAFVGGITEVAKGLWMKRAELD
LPRLVEYVRRLDVGAVVRRLGYLLEHYGLGDAATLESLRGMLTATYQRFD
PLLPAEGPFVSRWRLRLNVTPEELDAVRLG
>NE0722 AraC type helix-turn-helix
MIGRREPYIRPNCLFGFDDLVHSSGGDLHTLADQAGLPREAFSNPDILIS
WPRQGIFCELAAQELGRPNFGLDHAFSLPNTYPTAGAAIFLSQITHTFEE
WLDACERYARYYTNAWVPLLIRDGGPFAYVRLLKDPLAKSPRQQTEGLVA
TFYRMARTVIDATDEKAHLIRFRHARPCDTQPHEALFDCPVEFEAAHNEL
VFPHEYLNRPTNGRLAGLEPLLDLYLRYRIAKMPLYDQSVAATVAAGIPI
VLNTSLCNLEYFAVSLGLSPKKLQRLLQQENTSFSAILDKVRESLACEML
ETTDVPISNICGLLGYTALPAFNLAFKRWIGVAPSIYREFNRRKEKDCDS
>NE2153 conserved hypothetical protein
MKSALSLLGERQQSLLTALLHHRKGLTVEELSSLLTISRNAVNQHLTHLG
SSGFIQSALQESTGGRPGRVYTLTPNGLELFQRRYSFLAKLLLSWIDKNM
GEHELDVCLTELGKEMASGLEHRLTQHTSRSDKLQEAITIMSELGYDTEI
YRISENQAEIVANNCVFQELAQQHQEFCKLDISFLKHLLKADIEHTECIV
RNGKYCRFRITSPDESGS
>NE0787 hypothetical protein
MDHDKSKRLPPSYYTLLEASQEKETTSTKILAQYLDRSPATVRTQFQRIM
EFLDVSSRYGALREAEKRGLIRRNKRATSAHHQENRSSL
>NE2568 Bacterial regulatory proteins, ArsR family
MTDQYTQPDFSVMVEKKASAAKACSMLKILANEDRLLILCQLIQGKKNVG
ELEQTLGIRQPTLSQQLTVLRDEKLVSTERQGKYIYYSLASPEAVQIMNT
LFSVYCQNEHHHSPDDVTHNGRQ
>NE1224 hypothetical protein
MQVTDKGQVTIPKRLRDAAGFLPGSQVTFSLEGGKIIISKTGMGTDDRRK
SLRAAAAKVRKSLDEPFKQMNSDDIMAFLRPDGDDCA
>NE0320 GCN5-related N-acetyltransferase
MMSSEIRVRVCSSGDEEALALIGQATFLETFAGVLAGSNILAHCARAHSV
ECYRSWLADSRYKLWLAEISPGNAPIGYMVVSPAELPLADISLRDLELKR
IYVFSRFQGNGLGRRLLQEAIAEARIRKAERLLLGVYVRNDAAIGFYTRM
GFCKLGYRKFNMGGQKCDDYVMGLTL
>NE1432 DUF193
MRCPFCGAEDTSVVDSRISEEGARIRRRRRCVECEKRFTTYETVELRFPQ
VIKQDGNRVEFNREKLYTSFARALHKRPVPTGQVDAAIERILQKLLGSGV
QEISSRTIGEWVMQELYSLDKVAYIRFASVYRSFEDVGDFQEVIREVQSS
PQNGDGPSS
>NE1103 GCN5-related N-acetyltransferase
MSLQLNPPELLVATHLLDDFECGVNSLDEWLKRRALANQHSGASRTFVVA
DHDSRVYGYYAMAAGAVSHQAATSGVRRNMPDPVPVMVLARLAVDQRAQG
IKLGAALLQDAVNRVVNVSHNVGVRALLVHALDDRAKQFYAHYGFKESPQ
HPMTLMLRLNTTKA
>NE2519 conserved hypothetical protein
MSNEQLADLTQPQRDRLAFVELRVRFIGEIRRQDLVTRFGIQSAAASRDL
ALYKELAPGNIDYDSKGKSYVLGPDFRPVFDFPPERVLSWLTQGFGDGEP
MRLKAWVASESPSRLTHPDLDVLASVTRAIHQECPLGIEYHSISSGRTER
EIVPFALIDNGLRWHVRAFDRKSQEFRDFVITRIKRPVLIRDAEVQSHER
SDQDIQWTRIVELEMVPHPDQPRPEITEMDYGMVRGSLRMKLRAATAGYI
LRQWSVDCSPDHSLRGYEFRLWLKDHLALYGVKNAVLAPGYRSPDQNKGE
Q
>NE0951 Bacterial regulatory proteins, MerR family
MENQAQINVLPPIPVKRYFTIGEVSELCGVKPHVLRYWEQEFTQLRSIRR
HGNRRYYQHQEVILIRRIRELLYDYGFTINGARNHLVLGLQNQVKNNVVG
GQSCQSGSDFSLAGLKREIEQVISFLQVSE
>NE2511 AraC type helix-turn-helix:ThiJ/PfpI family
MTAISIGNNDNFDIIVAMKLHILVCDGVFDLGLAALTDTVGLANAMSGSL
PQAPAHIELTLVGVRRRIRTAQGLTVPVVTARGVPEPDVVLVPAFGDKMP
DTLSARLTRPDVPDAVAMLQQWSTAGAHLGAACSGSFLLAESGLLDGHRA
TTSWWLGPMFRQRYPNVTLDESRMIVNSTRFTTAGAALAHVDLALRIIRG
RSPALAALVARYLLVEARSSQAEFVIPDHLAHADPMVERFECWARRQLAK
GFSLAEAASAAGTSERTLARRLQSVLGKTPLSYFQDLRVEHAVHLLRTGN
ASVDQVAAQVGYSDGVTLRALLRRKLGRGVRELRRGG
>NE1729 conserved hypothetical protein
MSTQSILTKPTEATAFQPDQVVRILETVLLTTPEPLSISDLKKLFEGNID
KKTLHESLTILSEKWHDSGINLVSVAGGWRFQSKPEMQVFLDRLNPQRPP
RYSRAVMETLAIIAYRQPVTRGDIEEIRGVAVSTQIIKTLESRGWIETIG
QRDIPGKPYLYATTRHFLDDLNLQSLEQLPSLDSFNSLDLSADEAESVDT
DTTTIQESGEPASHEPTQLL
>NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MRILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAII
DIGLPGKSGLEIIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLT
KPFQMEELQARVRALLRRAVGIPQTLLKCGPIAVDVTAQSVSVDGANIEL
TSFEYRLLEELVCHRGEILSKESLADALYPHNEDRDSNVLEVMIGRLRRK
LDPEGTLKPIETMRGRGYRFTLECNSKSP
>NE2106 hypothetical protein
MNIERKQAKQKEISSGHSFLEWGMTILKMPPAKRIKMVRDGVKVTHLVGA
GRYYGISQAKLSKLLGISDATITRKIRSSGKLGPLESERLARIALIEAEA
EKVFDSSDLAKRWMLESNLALGESPLSLLDTDMGADEVRKVLASIAYGGI
A
>NE1265 GCN5-related N-acetyltransferase
MLIRSAKPEDAEFIGSIRVAAWQAAYRGFMPDTYLASLDPGANLDELRAA
LRAENPPFTLRIAETEGQPIAFSILGKPRYNADQSIVELWALNVHPTHWR
KGAGQQLVRQVLLDAKEQKFVSVELWCIQGNLAAQRLYEICGFVPNSQVR
TTSSLTGYPLHELAYTYAL
>NE2478 hypothetical protein
MFILEGNSIVKINQIPPGRTETVAGGSQKKMDRANSAKPGAVGESNNVHI
SSLSMSIQSLDASSETMNTAKVAEIKQAISEGRFKVNPEVVADRLLETVK
ELIQNKR
>NE1079 Sigma factor, ECF subfamily
MTIPVVKLVTWQQAHDLYNNHHGWLQKWLYRRLGNTFDAADIAQDVFMRV
LTRRQPSQIHEPRAYLSSIARGLVVDHWRRRELEQVWLEILAVLPEPETP
APESRLIFLETLVEIDRVLDSLKPAVRTAFLLAQIDGLTCSQIAKHLDVS
VATVERYIAKALRQCYALHFEA
>NE0554 Sigma factor, ECF subfamily
MRHYVAFQTVFLSRIIPLHRAYSRTSPLSTMNPSVILANLYLRHFSELRA
FLFRHTGCREIAAELTQETFIRIMGYQTDTSIQNARALLYRIAGNLAIDH
HRTCVKFPESVSIDDLPQHELPATELTDPARLVAARQLLEKLCIAIDALP
PQCHRAFVLHKFDGYSHAEIAEKLGITRNAVEKLLIRALIRLRQVLV
>NE0896 Helix-turn-helix motif
MLRIFMESLPSVFGDCCLKVGSRDSRILTTSGALRLLIFDHRVNRVFIVS
ASSFTRGMAMRKRHYKRKPYKPVNYDTIRETRLLAGLTRQQVADMLRVSL
RTVQYWERGLVHMPYAAFRLLRILTGYELPGKEWKNWMLLRNKLISPEGK
TFTPGDLYPLNWTIDKARMWDKEYRRRVGSGETALVPFALPGNAWRGWMC
HDGRLLSPDGMAFTPVHLNFLASMVDRICGEISSVPVKVIQGDTP
>NE2311 possible helicase (Snf2/Rad54 family)
MVQQLLTPHQSQYIAWQLTRRAAKDSVESLASTLVDSQVDLNPHQVDAAL
FACRNPLSRGVILADEVGLGKTIEAGLVISQHWAERRRKMLIIVPANLRK
QWHQELQDKFNLQGLVLEAKNYNAMRKEGVTQPFLHAGGPIICSYQFAKA
KADDLRRIHWDLVVMDEAHRLRNVYKNGNVIARTIRDALEHVDAKVLLTA
TPLQNTLLELYGLVSMIDERVFGDLDSFRTQFSGVRTEQSNRALRERLTP
LCKRTLRRQVQQYVPYTARIAIVEEFTPSQEEQQLSALVADYLRRPNLKA
LPEGQRQLISLVLWKLLASSSHAIAGALETMANRLQGQLDELPDVPDLTE
SLDDDYEGLDETADEWNGATANDADASANERAAIADEAAELRRFKELATS
IRQNAKGQALLTALDKAFAELERLGASKKAIIFTESKRTQNYLLSLLAET
PYGIVLFNGTNTDARAQAIYKDWLQRHEGSDRITGSKTADTRAALVEHFK
ERGTIMIATEAGAEGINLQFCSLVINYDLPWNPQRIEQRIGRCHRYGQKH
DVVVVNFVDRSNEADARVYQLLSQKFKLFEGVFGASDEVLGAIGSGVDFE
RRIAAIYQNCREPEEIRSRFEDLQRELSSEIDEAMLRTRQLLLENFDEEV
QEKLRIHSQDSQAVLNKYERLLMDLSRTELRDHARFDTAEEVNGFVLHSL
PDGLGLATGSREQAVMAGRYELPRRSGDAHLYRMGHPLAEWAIERAKARD
LQAPARLAFDYAAYGKRLVSLEKWRGQCGWLSVTLLSVETLNDQEQHLVV
SACTQAGEALPEDDPEKLLRLPAQVEGDAHLQVCAELVANVESRKSVLLR
GINQRNLGYFEQEVQKLDTWADDLKLGLEQEIKAIDGEIKEVRRTAAASP
TLEEKLAHQKRQRELETRRSKLRRDLFARQDEVEEQRNKLIGELEEQLKQ
QVAERMLFTVEWELT
>NE1350 conserved hypothetical protein
MTAATLTSKGQITIPAAVRAGLGIDVGDRVEFIEIEPGRYEVIAATQSVK
ALKGIIRKPNHPISIEQMNAAIAREAVKSVR
>NE2486 Sigma factor, ECF subfamily
MPFLLSGHLSDQSCKAGTLPYKIRIVLILFLCPHMCLTNDEGSAVPATDL
AAHQIHILYTDHHGWLYNWLRHKLGNACDAADIAQDTFMRILTRQQPVHL
NEPRAYLSTIAHGLVIDHWRRRELERAWLETLASLPEPEAPAPETRLIFL
EALIEIDRLLDSLKPRVRTTFLLAQLDGLTCPQIAERLGVSLSTVERYIT
KALRSCYMLRFEP
>NE0186 conserved hypothetical protein
MDINMAHSLISCDLHDYIEVACMYSYQVRLILKDQSTVEGKAKDILTDAE
KREFLLLETESGSQQVELISLDRLQVLTPGARFSEVVFSDTCEP
>NE2498 hypothetical protein
MPKMDVKGIAVTVYSENAMDFISLTDMLRAKDGDFFISDWLRNRNTVEFL
GIWEQVHNPNFNYGEFATIRSQAGLNSYKISVKEWVARTHAIGLVAKAGR
YGGTYAHKDIAFEFGMWISAEFKIYLIKEFQRLKEAEQQQLGWDIRRNLT
KINYRIHTDAIQTNLIPPALTQSQISLIYASEADLLNMALFGKTAKQWRE
ENPNNKGNIRDEANVSQLVCLANLETLNAHFIHQGLPQVERLKILNQTAI
HQMKLLLADRSLKQLDGN
>NE0293 hypothetical protein
MPTIHEVATLTSKGQITLPKSIRQALGADTGSKLAFELRGGEVIVTRADT
GHEDPAIAAFLALLARDIEAGRNIRGLPEDLIRTMLEHTGHNVVLGDDFD
EDVEI
>NE1807 putative ATP-dependent RNA helicase protein
MSFENLNLHPAIVKAVLAAGYTAPTPIQQQAIPDLIAGHDVMASAQTGTG
KTAAFMLPALHRLATPAQIRGRGPRILVLTPTRELALQVSDAASKYGKFL
PRINVVSILGGMPYPLQNKLLSQTVDVLVATPGRLIDHIERGRIDFSRLE
MLVLDEADRMLDMGFIQDVERIALSTPATRQTLLFSATLDVAIEKIATRL
LKAPKRIQVAAQHTKLDHIEQRMHYVDDLTHKNRLLDHLLRDTTIKQAIV
FTATKRDADSLADNLSSQGHKAAAMHGDMTQRERTRTLTGLRQGRLKILV
ATDVAARGIDIADITHVINFDLPKFAEDYVHRIGRTGRAGASGIAVSFAS
GKDVAHLKRIERFTGNRFEFHVIPGIEPRTKPRFGRSDDKPGRRPSSSAA
AHKTRRSWSDNPNTRTASPGHRGDKDAGFGQPFGRETRKRPFRDSKFNSA
DRFARTE
>NE1096 Sigma factor, ECF subfamily
MPPPDIHCKQVETLYSDHHRWLRGWLCKKLGCSEQAADLVHDTFLRILNS
GEVLTGLTKPRAYLTTTAKRLLIDRARHRRVEQSYLDELALMTATMEGAP
SPEAILMALEALKQLSDALQSLPANASEAFLQHYLLDETQPAIAARLGVS
VRMVQKYLAQALLCCHRALTD
>NE1313 Response regulator receiver domain:Helix-turn-helix Fis-type
MDRPSLLIVDDDETFCEVLARAMVKRGFDTTCMHDIKTALEQAEVLMPEY
AIIDLKLGNESGLLLVEKIRELDPGTRIIVLTGYASIATAVEAIKLGATH
YLAKPVDADDIMAAFERTSGDTETPISPHPLSVERLEWEYIHRILMENDN
NVSVTAKVLNMHRRTLQRKLSKKPAQL
>NE0818 putative sigma-70 factor, ECF subfamily
MPRHRISGINWLAHYNELIRFWTRKTGSRGDVEDATHDVITKLLESNVST
ISSPRSYLHSSIRNRLTDSYRQNKILDLVPIHDLPEDSHPLQPNDPVTHT
CTMQLLTALKEALQELPLKCRQVFIWHRLEGYSQTEIAEKLDISVNMVEK
YMIRATRHLRDRLQDHIPD
>NE1192 Sigma factor, ECF subfamily
MLTVTDYYKELLNFCARTLKDRDAAADLVQEAYTRFLVAQRSGAAIADPR
ALLFRTTRNLLIDQHRRAEVRMHLSLDTLLEEEQPLAPRHLQPEEVLAFS
RYAQALYAAIESLPRRCREAFILNRFDGLSHQEVAEKMGISRNMVAQHII
RGVLVCKACDDRFHGRVVLASKPAE
>NE1355 Cro repressor helix-turn-helix motif:Helix-turn-helix motif
MSKKTPLNEIAEFDVSDYLRDDEDIAEYLTQVLAEGDSNELLRAIGYIAK
ARGITQLAKDTGLGRESLYKAFRAGSKPQFETVFKVLHALNINLKAIPKE
VVSTRV
>NE1099 Sigma factor, ECF subfamily
MSIDDPAHLNAVDTLYSDHHDWLVRWLRSRLGCAHNAADLAQDTFTRILA
SRDATTVCEPRAYLTTIAKSLMVNWYRRQALERAYLDALAHIPETEVPAP
EQHLIILETLHEIDRMLDSLAPKVRQAFLLSQIEGLKYEVIAEQLGVSLG
SVKRYMQQAFRQCLLLM
>NE0128 probable sigma-70 factor, ECF subfamily
MKYLLEPALSVNPIHSDSITELYQDHHGWLHGWLRKKLGCSHQAADLAHD
TFMRLLTREEPILIQEPRAFLTTVAQRVLANHWRRKQIEQAYFEMLVQHP
EASVLSAEECAILLETLLEIDHLLNRLPLPVKRAFLYAQLDGMSHAEIAA
ELNISITTVKRYLIKAGAQCYFALVID
>NE0263 Bacterial regulatory proteins, ArsR family
MPYYLFHGTSHYFIIYLINLMLNNENMDRFAALAEPNRRRMIEIIAAQGE
IAASDISNQFDISPSAVSQHLKVLREAELVKMEKRAQQRIYSINPQGVDE
MWEWLSQMRKFWNERFDALDALLLTEHNTPKGNNDEHNTN
>NE0118 hypothetical protein
MNSAILSQDGRVVIPKKFRNKLEIKEGDEVIWKEEDEQIILTSRRQELER
AERFFGQMMADYAGDSLADELIAERRAGAIYEHTSHG
>NE1634 hypothetical protein
MAKVDTRPDHHRLLLETIVQPASLTGYDNRQWELLLRLARRAQLSGYLAA
KLEKDGLLDSIPARASNLLRSSLIQARKQQQSVSWELNRVMWALDGQEIP
VIVLKGMAYLLQDLPNAPGRMFADLDLLVSKENLGQIESSLLKKGWQHHA
LTDYDERYYREWSHEIPALVHPERSVEVDVHHTLSSPLGKLKIDPLPFRE
AAVKVKDAGIYVLSPEDMVLHCAVNLFQNNELADDLRHLLDFHEMMLFFS
SQQPFFQQKLIERANQLGLGNPLFYSLYFSRLLLRSAIPDDLEKQLDRQP
GWLARRVMHHCVPLALLPQHPDHPSRMAGYARMWLYWRSHWLRMPLYRLV
PHLAYKFYLSVFPARAETSK
>NE2507 AraC type helix-turn-helix:ThiJ/PfpI family
MKLHILVCDGVFDLGLAALTDTVGLANAMSGSLPQAPAHIELTLVGVRRR
IRTAQGLTVPVVTARGVPEPDVVLVPAFGDKMPDTLSARLTRPDVPDAVA
MLQQWSTAGAHLGAACSGSFLLAESGLLDGHRATTSWWLGPMFRQRYPNV
TLDESRMIVNSTRFTTAGAALAHVDLALRIIRGRSPALATLVARYLLVET
RSSQAEFVIPDHLAHADPMVERFECWARRRLAKGFSLAEAASAAGTSERT
LARRLQSVLGKTPLSYFQDLRVEHAVHLLRTGNASVDQVAAQVGYSDGVT
LRALLRRKLGRSVRELRRGG
>NE1101 Sigma factor, ECF subfamily
MSADEFILQQKVHALYSNHRSWLQRWLYRKLGNACDAADLVQDTFISVIT
GGYADDIREPKPFLATIAGRLVAHRWRRNQLETAYLEALAALPVELMPSP
EAHVLALEALLEIDRALDGLPTRVKEAFLLAHLEELSYAQIAERLNVSTS
SVKQYLTRANRQCLFALSV
>NE0557 possible sigma-70 factor, ECF subfamily
MMAVLHRSSDIIAATICRILIPQFYSDNTVPINGNYSCIFLLSYMFPLDS
PLLADLYKKYRSRLISRIARLTGCRETAADLAQDAYMRLLDQTGVACPSN
PAAYLFRIGRNLAIDHQRRPDFRQHDETSFEEELPSSFSGLDQQAVYRQE
CEQLWTAIMELPRPVSRALVLSVIEGVSQAAIAEELGVTERTVRRYISKG
MAHCQRRLRNPLPPARYDR
>NE0318 conserved hypothetical protein
MNPNIRVWFSADELAKLSPHLVTRIPVSPRQCRERAKREKWLSREVAGKG
GPRGKKTEFLPPENILSEIHQFLSRNPDFFAEAGSSPENATQPGMYQARQ
PMSRNGKYGQSIVGNHTDLENSEVVYVAHTELCDTPGEVTEMIPDDQMIL
SIAVNPADWRRYAGLNPEHIKIIDVQGDGMKPTLQHGDQVLVDTACNRFV
DDAIYAIRQGDMLRIKRIRLRLDGSIEIRSDNSHNFGIETYSQKEAAAFN
VFGKILPFKFGKFDL
>NE0980 putative sigma-70 factor, ECF subfamily
MSTTEEASENEITILYTDHHGWLKRWLYRKLGNSFDAADLAHDIFMRLLA
REQSTVIHQPRALLTTIAQGIVSNFYRRRKIETAYLETLAHLPEAQAPDP
EIRVILLETLIEIDRRLDMLAPLVRRAFLLSQVDGMKQTDIAAELNLSLA
TVQRYIVKAVHQCYFGE
>NE1992 Sigma factor, ECF subfamily
MTKSRFTSLSQAVEAYYDELRQFIHQRTGSSLMAEDVIQETWIRARTTSA
DLPDNLRAYLYRMAGNVAVDHVRRQKNWGREEGDSYEAENSNEHLDQLPG
HTPDLIDAIISQQELAILDAAIRELPDKCREVFLLYRGHGLSMREVAVHL
SISEKTVEKHVARAMLHCRQRLRDAGRNV
>NE0262 conserved hypothetical protein
MPIQKNTSVTLGEHFEKFLAHQIEAGRYGSASEAIRAGLRLLEEREAKLE
ALRRALIEGEQSGPADYSLQNVLDELESAD
>NE0880 probable ATP-dependent DNA helicase-related protein
MSDLNTVFSADGLLARNIPDYRPRTQQLEMAQAIAQAIESQEVLVTEAGT
GTGKTYAYLVPALLSGGKVILSTGTKTLQDQLFQRDIPTVRAALKIPVTI
ALLKGRANYICHYHLERTLNSDHIHFASRTEVKYLNLIERYAGTSSHGDK
SGLDKVPEQAAIWQHVTSTRENCLGSDCPHYRQCFVMEARKRALSADIVV
VNHHLFFADVMLRDEGLSELLPACNTVIFDEAHQLPEVASLFFGESVSTG
QIQVLVRDTDTEALLEAKDFAPLFDATAAVGKAVLDLHLTITEKHTRMSS
ASAARYPGFSEARQVLQEKLVLLAGLLETQAVRSQGLQNCWLRAQTLLNR
IRQWHEQSESREFICWVETYSQSLQFNTTPLSVAETFSKQLDASARAWIF
TSATLSVKKDFSHYNRMMGLFEAKTANWDSPFDFPNQALLYVPSQLPDPN
TPHYTESIVQAVLPVIKASQGRAFILCTSLRNMQQIHELLQVAFQREQLE
FPLLLQGQEARSALLNQFRQLGNAVLVGSQSFWEGIDVKGNALSLVIIDR
LPFASPDDPVLSARIEKFTREGRNAFMEYQLPHAIISLKQGAGRLIRDEK
DRGVLMICDPRLVSKPYGKQIWQSLPPMKRTRDPDEVLRFLENVDQ
>NE2525 possible ATP-dependent DNA helicase RecG-related protein
MRSATDLLDELNAVDESARIEAKRASDMGKSVMETVIAFANEPGLDGGYL
LLGVDWAINDKGDTVYRPVGLPDPDKVQRDLASQCASMLNVALRPEMQLE
QVGGKTLLVVYVPEADVTHKPIYKKATGLPGGAYRRIGSSDQRCVDEDLW
VLRGESQPLHGPDSSILSDARADDFDPTAIAAYRRERARINPQAEELDYG
DEDMLEALGALRRVDGVLQPTLAGIVLFGKPLALRRLLPMVRIDYIRVPG
NEWVEDPENRFQSIDIRKPLMLALPLAEASIIDELPKGFRLPEGQLQSVQ
EPILPRKVIREALANAAMHRNYTLHSPTQIIRYSNRIEIRNVGYSLKEPA
QLGLPGSRLRNPAIAAVLHDLHLAEAKGTGIRAMRRLAADAGLPLPEFHS
DRQANEFKLTLFLHNLLTEEDHTWLRNYAGSTLGPDEAKVLIYVRATGAV
DNTACRDFCGSDTLAASMVLRRLRDRGLLEKRGAGSRTYYTLAGNEPRPT
LESAQSELPLDVPADTPPVGQPQPAEAVAGQQACNPQLATLPPELATLLA
TLQGRISSEALRDGIRRLCQWAPQSGDQLATLLGKDRDYLRNKHLIPMVR
DGQLRFRYPESAKHPHQAYVAPEDKRND
>NE2256 GCN5-related N-acetyltransferase
MSSYEMFADKNIVAGELANLMASAGWGTEGDYDATAIEKSLSAYPMIAYC
RDSDGLLVGYISAFTDGAFSTFVGELVVRPTYQQRGIGSALLAMIVEKCR
GVPVYATPFQGTEKFFLDRGFRVPERPMSVVSMRNVT
>NE2459 birA, putative BirA bifunctional protein
MNTSSLLLAVDSGNTAIKWGLHDGRQWLAHGKTLQSERRMLKQNWTALPA
PASILIANVAGLQAADDLKALLAPWHVHLEWATASARQCGVISRYSNPAQ
LGCDRWVALIAAWHRLQQACLVVDVGTAMTVDALSASGEFLGGVIVPGPD
AMRQALADRAGIFSMPLSGSFQNFPINTGNALYSGMIQALTGAVERMYDQ
LSEYTGKQMVVETILTGGGAALLAPHIHIPHQIVDDLVLEGLVIIAGAQA
EIPATR
>NE1922 cbbR, rbcR, Bacterial regulatory protein, LysR family
MLHITLHQLKIFESVARLLNFTHAAEELHLTQPAVSIQIKRLEEMVALPL
FEQIGKRVHLTEAGKELFHYSRGITRQLADMELALDELKGLERGKLSISV
VSTANYFVPNLLAKFCQRYPGITISLHVSNRENVLKQLSDNIMDLAIMGQ
PPEGLDITSESFMENPLVIIAPPEHPLCGQKQIPVKRLEQEIFLVREPGS
GTRNAMERFFAHEKISIQKGMEADTAEAIKQAIQAGMGLGIMSLHTIRLE
LEAGRLKILDIQGLPIMRYWNVVHQKNKRLSNISSVFKQFLLNEAADLVA
LEYPHRNTT
>NE0572 cbl, Bacterial regulatory protein, LysR family
MNFQQLRIISETIRQNYNLTEVANALFTSQSGVSKHIKDLEDELNIDLFI
RKGKRLTGLTAPGKELVKIVDRILLDTRNIKRLAEQFSQHDQGELTVATT
HTQAQYALPDVVRQFKEIFPKVHLVLHESSPGEIVSMLLNGQADIGIATE
ALESTSELVSFPYYTWHHAIIVPAEHPLQSIHPLTLEAVAQFPIITYHKG
FTGRSRIDQAFSRAELTPNIAMSALDADVIKTYVTLGMGIGIVASVAFTP
ERDTKLIKLDGSHLFEQNTTCISIRRNHYLRGYAYRFIELCIPSLSRDTI
CSEIQ
>NE1312 cspD2, Cold-shock DNA-binding domain
MTTGTVKWFNDAKGFGFITPDDGSEDLFAHFSAINMNGFKTLREGQKVSF
DVTQGQKGKQASNIQAP
>NE1731 cspD2, Cold-shock DNA-binding domain
MATGTVKWFNDSKGFGFITPDDGSEDLFAHFSAINMTGFKTLKEGQKVSF
EVTQGPKGKQASNIQSA
>NE0854 cysB, Bacterial regulatory protein, LysR family
MKLQQLKYLHEIAKQKLNLSKAANALHTSQPGISRQIQLLEQELGVEIFT
RHGKRIIGITQPGLAILQTAQRMLQDADNLKKIGNEFNDKESGTFIIATT
HTQARYVLPPVIKRFIEHYPKIRLSLRQGSPIEIATWVSSGEADLAIATE
AIELFDKLVMLPCYEWNRCIVVPPRHPLLQLKELTLESIAQYAIVTYDFA
FTGRSKINQAFESKGLKPNVVLTALDADVIKTYVEIGLGVGILAKMAFDP
VRDKKLRAIDAAHLFEPSTTRIGICRNSYIRHYVYDFIEMFAAHLDMETV
NKLLKNPENQQLSIANDK
>NE2435 fecI, Probable fecI Specialized sigma subunits of RNA polymerase
MLDNSIPTDSCLVSGATVSTDIETLYCNHHDWLQVWLRRRLSSAVDASDL
AHDTFVRVLVSGRMPNAEQSRAFLTQIAKGLAVDLYRRRAIEEAYLAALA
QLPENLAPSAEERVLALQVLLLLDTALGSLPSRVREVFLLSRLDGLTYSD
IAQRRGISVATVRKYMLRAAQACHCVLNSPTGTAP
>NE0875 fis, probable factor-for-inversion-stimulation transcription regulator protein
MTVINENEIALCIRRAVEAYFQDLDGEKPCPIYEMVIRSVEKPLIEIAMH
YAQGNQSKAAELLGINRNTLRNRLTKHQIR
>NE2491 fliA, Sigma-70 factor family
MYTDTGIVDKDQFITEFTPLVKRIAHHMMARLPASVQVDDLIQAGMIGLL
DAINRYEGSYGRQFESYAAQRIRGSILDELREADWLPRSLRRKMRQIETA
MRALEQRLGYPPSEQEIANEMNLPLVEYQEMLQEAGGGQLIYYEDFQEDE
EDHFLDRLRGDQSNEPLDRLLEKNLRELLVAAIEKLPAKEKLVMGMYYEQ
EMNLREIGKVLGVSESRVCQLHTQAISRLRTHLRDK
>NE1660 greA, Prokaryotic transcription elongation factor GreA/GreB
MNIVLLFFHGKRNQVMNAIPITQAGAEKLRAELHEMKTVHRPAVIAAIAE
ARSHGDLSENAEYDAAKERQGFIEGRIAELESKLSNAQIINPATLNADGA
CVFGATIDLMDLGNNTTVTYQIVGDDEADIKQGKISISSPIARALIGKYA
GDIAEVQAPGGVREYEILDVKYI
>NE1848 greB, Prokaryotic transcription elongation factor GreA/GreB
MSKAFTKESDGEEELDGNPQLPQGVKNYITPGGYQRLKDEFDQLWRVERP
ELVKVVSWAASNGDRSENGDYIYGKRRLREIDRRLRFLSRRLDNAEIIDP
KQRGECDQVFFGATVTVCNQRGEEQTYSIVGIDEAEPGRGWISWISPLAK
ALLKAREGDVVPLQTPGGPQELEVVEIRYEAL
>NE1477 hrcA, Negative regulator of class I heat shock protein
MLNEREKILLKTLVERYIHEGQPVGSRSLAKFSGLDLSPATIRNVMTDLE
EMGYVSSPHTSAGRMPTTLGYRFFVDTLLVVKSLDNEQITLLENQLHPNN
PTHLMNVTSRLLSELTRFVGVVVTPKRMGGAVFRHIEFVALTEKRILLIL
VTPEGDVQNRIILTETAYSQSDLIEAGNFLNQHYAGCTLEEIRSGLQREL
TQLRRDMTGLMNAAIEIGNDALQESSEAVVIAGEHRLFDVRDLSDNLSSL
KSLFEMFERKSKLLQLMELSRQAHGVKIFIGGESDETMLEEVSVVTAPYE
MEGKIVGTVGVIGPRRMAYERIIPIVDITAKLLSSNLS
>NE0838 merD, Bacterial regulatory proteins, MerR family
MNAYTVSRLADDAGVSVHVVRDYIVRGLLRPVACTTGGYGLFDAAALQRL
CFVRAAFDAGIGLGALARLCRALDAADGDGAAAQLAVLHQLVERRREALA
SLEMQLAAMPIESARQTESLP
>NE0843 merR, Bacterial regulatory proteins, MerR family
MQTILENLTIGAFARAAGVNVETIRFYQRKGLLPEPDKPYGSIRRYGEAD
VTRVRFVKSAQRLGFSLDEIAELLRLDDGTHCEEASSLAEHKLKDVREKM
ADLARMESVLSELVSACHLRQGNVSCPLIASLQGDASPAMP
>NE1435 metR, Bacterial regulatory protein, LysR family
MIELRHLRTLNALHETGSISLAAQRVHLTQSALSHQIKALQEYYQLPLIQ
RSGHAVQLTEAGKRLVKLAEKILGEVQSAERDLAKIARQAAGSLRIVLEC
HTCFDWLMPIMDDFRQHWPEVELDLVSGFHSDPVALLRQDIADVVIGSEN
RPQQGIVHFPLFRFEILAVLAPDHVLGNKRVLEAVDFAQDVLITYSVPEE
RIDLIRQVLIPAGVSWQRRTTELTVAILQLVASRRGIAALPGWGIKNYLD
YEYVIAKRIGTRGLWSDLYLSVREEDASLRYLQDFLETIGQICFARLDGI
RPLSGKRKEKKREARKTIGQSSPV
>NE0008 mfd, mfd: transcription-repair coupling factor
MSSKLNPLSSESLPRYTGLEGSSDACALARLANRNPAGQLLAVITASALD
AQRLLEEIPFFAPDLRVSLLPDWETLPYDIFSPHQDLISERLATFYQIAH
NACDVLIIPVTTALYRMPPREFLAAHSFFVNQGSTLDLQSFRSQMSLAGY
SHVSQVLSPGEYSIRGGLIDLFPMGSPLPYRIDLFDDEIESIRTFDVDTQ
RSIYPVKEIRLLPAREFPLDDNGRSRFRTGFREKFEGDPTRCRLYQEISK
GNIPAGIEYYLPLFFEQTATLFDYLAQHSTVCLHGEITPAIENFWQDTRS
RYQLMRNDPDRPLLPPMDLFLPEDQFYGYLKSYKRIEMHTGQQVKTDKPF
ARSLPPVRVDRRASNPIEQLTAFVHTFTQKGGRVLLLAESMGRRELMAEY
LREYGLKLKLCEDFAAFQSDTASCMLSVASLHSGFILAAENLALVTENEL
YATHVRGQRTRDARKTVSADSILRDLSEIKPGSPVVHEQHGIGRYLGLVN
MNMGEDDSGQSSEFLALEYQGGDKLYVPVTQLHLISRYSGAAPEAAPLHK
LGSGQWEKAKRKAMQQVRDTAAELLNLYAQRAARKGHIFRFNQHDYNAFA
DGFGFEETPDQATAINAVIQDMVSGKSMDRLICGDVGFGKTEVALRAAFV
AVTDGKQVAVLVPTTLLAEQHYQNFSDRFGLIADQWPVKIAELSRFRSAR
EQAEALQSLAQGTTDIIIGTHKLIQDKVKFKNLGLVIIDEEHRFGVRQKE
QLKKLRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLAIRTFV
HPYSEGIIREACLRELKRGGQIYFLYNEVSTIQNMYTRLTTLLPEARINI
AHGQMRESELEHVMRDFYQQRFNLLLCTTIIETGIDIPTANTIIIHRADK
FGLAQLHQLRGRVGRSHHQAYAYLLTPPEKAALTTQATRRLEAIQAMEEL
GSGFYLAMHDLEIRGAGAVLGDSQSGEMQEVGFSLYSSLLDAAIKSLKAG
HEPDMQQPLGVSTEIRLHVPALLPESYCGDIHERLILYKRMAGCSDETEL
DEIHQELIDRFGLLPDPARALLDSHRLRIEARQLGITRIDAGPDNIQLQF
VPEPPIEAIKIIQLIQSSKEYSLSGPDRLSVRLQIPDVGERVKKIKKLMT
LLKN
>NE0760 nusA, S1 RNA binding domain:KH domain:Type 1 KH domain
MSREILLLVNALAHEKNVDKNIVFTALEMALASAAKKHTRDDIDVRVSID
RDTGGFHCFRRWLIVADDPVEHPERQITVSEAVGRNPQAVPGEYIEDLME
DVTFDRIGAQAAKQVIFQKIRDAEREQNLNDFLDRGEYLVYGVIKRMDRG
NAIIEFGKIEAVLPRDQMISHENLRMGDRVRAYLLRIDRSVRGPQLVLSR
TSPAFLAKLFELEVPEIEEGILEIKAAARDPGSRAKIAVKSNDSRVDPIG
TCVGMRGSRVQAVTSELAGERVDIIQWSDDQATFVVNALAPAVISSIVVD
EEKHCMDIVVDEENLAQAIGRGGQNVRLASELTGWQLNIMTEEESQEKTE
EEAASICELFMEKLDVDEDVGRILVEEGFSTLEEVAYIPIEEMLEIQEFD
RETIEELRNRARNALLTDAIATEEKIGHASEALLALEGMDIELVRELAEK
GISTQEELADLAADDLVELTGIDFERASKIIIKAREPWFA
>NE2558 nusB, Antitermination protein NusB
MMSTETVPPVKRVQGHKGYKNRRRLSRELALQGIYQWQVTGGNARDIGMQ
LQQVSFFSKADGPYFSDLLQGVLEHAADLQTQIQPHLDRQIAELSPVECS
ILLIGTYEMVYRPEIPCRAIINEAIELAKSYGGTDGHKYVNGVLDKLATR
LRAVELQHPPARNKDSG
>NE2051 nusG, nusG; Bacterial transcription antitermination
MSKKWYAVHTYSGFEKSVKRALKDRIAQHKLEDKFGEILIPVEEVIEIKG
GQKSISERKFFPSYILIEMEMTDETWHLVKGTPKVTGFVGGTSTQPVPIS
HKEIESIFNQVREGVEKPKPKVIFEAGEAVRIKEGPFTDFHGNVEEVNYD
KSKLQVSVSIFGRPTPVELDFHQVDKV
>NE2131 phoB, possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding
MSATVLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLV
LLDWMLPGKSGIELARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGAD
DYVTKPFSPRELIARIKAVLRRSLPEASDEILDIGGVQINPMTHRVTVTD
LNDGTHEKELLLSPTEYRLLYFLMAHAERVHTRAQLLDRVWGDHVFVEDR
TVDVHIRRLRKALDVAGKADLVQTVRGAGYRFSTRGESEL
>NE1850 recG, RecG-like helicases
MAAHFFDSLDEALRKKLEKLGLFSDFDLVLHLPLRYEDETRLSPISQAVP
GSTVQVEGVVAEQEVLVRPRRQLVCRVDDDSGTLYLRFFNFYASQVTAWS
PGTRLRVLGEVRAGFHGVEMVHPKCRVVRGSMVLANTLTPVYPGMAGLPQ
RTLARLIMQAFERLRAKRLLQETLPATILSACQFPAFEDSLSILHCPPAG
VSITSLQQRSHPAWFRIKFDELLAQQLSMRCHYHQRRSQQAPVLQQQTGL
QQALLEVLPFGLTDAQCKVVTEISKDLAQPYPMQRLLQGDVGSGKTIVAA
LAALQSIGNGYQVAVMAPTEILAEQHFRKLSDWLTPLGVGVGWLSGSQKK
SLRNQELERTATGEAMLVIGTHALFREAVQFKCLGLVIIDEQHRFGVGQR
LALRMKGGDEEVIPHQLMMSATPIPRTLSMSYFADLDVSVIDQLPPGRSP
VVTRLIDSSRREEIVARIREACLAGRQAYWVCPLIEESEALQLKTAVETY
ETLSQTFPDLRIALIHGRLDSDEKSVIMAEFSQGEVQLLVATTVIEVGVD
VPNASLMVIEHAERMGLSQLHQLRGRIGRGSATGVCVLMYQQPLSEVARK
RLQIIFEHRDGFEIARQDLLLRGPGEFLGTRQSGVPLLRFANLEEDIDLL
EMARNAAENMLRDHPLAAQCHMQRWLGRKEDYLRA
>NE0468 rfaH, putative transcriptional activator
MHWYLVHTKPKQEKCAFQNLQQQGYRCYLPMLPVEKLHLGNLTVVDEPLF
PRYLFIQLEQGDSAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQ
EASFQHKPERLFKPGERVRLTEGAFAGIEGIYQMAEGERRVMVLIELLSK
PVAMRVSPTSLRKTN
>NE2040 rhlE, rhlE; ATP-dependent RNA helicase RhlE
MSNDVTFAQLGLSSEILHAVNDEGYVNPTPIQAQVIPSILAGKDVMASAQ
TGTGKTAGFTLPLLYRLQAYANTSVSPARHPVRALIMAPTRELAMQIDES
VRKYGKYLALRTAVVFGGINIEPQIAALQAGVEILVATPGRLLDLVEQKA
VNFSKTEILVLDEADRMLDMGFLPDIKRVMALLSPQRQSLMFSATFSGEI
RKLADSLLKQPVRIEAAVQNTVNESISHVIHWVKPDSKFALLLHLIRQQN
LKQALIFVKTKHGASHLAQMLSRHEISAVAIHGDRNQQQRTQALAEFKHG
DVQILVATDVAARGIDIEKLSHVINYELPGNPEDYVHRIGRTGRAGSKGK
AISLVSEHEKELLANIEKLLNAKLETEQIAGFDAEQFARSLPDRKNRMSA
GNSRYGNKPMENGSEKSRSEKHRKLPSSQKYSGSRRGGTQKYSDPIFTQP
YVPQANSTQSTTPKQPEIQSLFLTYRQEKKTIPALFTALSKSKAGQEN
>NE1035 rho, rho; Transcription termination factor
MRLSDLKSIHVSELVKMAVANDIEGANRMRKQDLVFALLKNQARKSESIF
GEGTLEILQDGFGFLRSPDTSYLAGPDDIYISPSQIRRFNLHTGDSVDGE
IRPPKEGERYFALVKIDKVNNEPPENSKRKILFENLTPLFPTERLTLERD
IKSEENITGRIIDLIAPIGKGQRGLLVASPKSGKTVMLQHIAHSIAANHP
DVVLMVLLIDERPEEVTEMVRSVKGEVISSTFDESAARHVQVADMVIEKA
KRLVEHKKDVVILLDSITRLARAYNTIVPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRMA
EKRIYPAINVNRSGTRREELLIPSEILQKIWILRKLLYPMDEMDAMSFLL
DKIKATKNNADFFDSMRRV
>NE2324 rnc, rnc; ribonuclease III (RNAse III) protein
MTSSRPIAHNTKNKQTKTLKGRDYAVFLQKLGYTFKQPDLLREALTHRSL
GFPNNERFEFLGDSVLNCAVSTLLFKRFPSLPEGDLTRLRANFVNQQALH
RLASALGIGELILLGEGERKSGGHHRPSILANAVEAIIGAIYLESGFAVV
EQVIVALYEPLIRQLDPDTSGKDSKTLLQEYLQSRKIALPEYSVLLAQGD
PHAQVFHVECVIPGFGIRTRGEGTSRRRAEQEAARQAYELAIVRH
>NE2130 rnk, Prokaryotic transcription elongation factor GreA/GreB
MSIKPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEI
PPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILAPVGSALL
GLAQGDEIEWPKPGGGVLRVRIVEVTYQPERSGEYYR
>NE0350 rnr, rnr; exoribonuclease RNAse R (vacB protein)
MSIKRKRNKKNQLRELDPFLKREQTRYGQALPSREFILEVLDKQGVPISE
SKLLKLLDITSEESEFFRRRLAAMIREGQIICNRKGDICVTEKLELVKGV
VQGHSDGFGFLIPDDGSTDLFLTPKEMHKVLHGDRVIARVTNIVDRRGRR
ECRIIRVLESVNTQLVGRLFEEHGIFFVVAEDKRINQDILIPKENIMDAH
AGQIVVARIIQQPREHAQPIGHIIEILGDYAAPGMEIEIALRKFDLPHEF
PPEVISVKFPQKVLKKDLTKREDIRHLPLVTIDSETARDFDDAVHCCQEG
KDYRLFVAIADVSHYVRDQDALDKEAFNRGNSVYFPRRVIPMLPEVLSNG
LCSLNPQVDRLCMVCEMLWTARGELVEYRFYPAVMLSHARLTYNIVAELL
DQPKGAVAKEHRQLLPHIQLLYRLFKVLHKSRVKRGAIDFETIETEMVFN
DQGKIEQIYPVKRNDAHRLIEECMLAANVCAADFLQKHEQPVLYRIHEGP
TDEKLVALRDFLKEFGLQLRGGEKPQARDYARILDRIKERADAQLLQTVM
LRSLSQAMYNPDNIGHFGLAYEMYTHFTSPIRRYPDLLVHRAIKAVLADK
QYEPGDWHEIGKHCSQTERRADEATREVQSWLKCFYMQDKIGDCFGGVVT
GVTAFGLFVTLDEIYVEGLVYISELPSDYFHYDAVKHVLRGERSGISFRL
GDRLQVKLVRVDLATRKIDFILADNSVRKKSSR
>NE0426 rpoA, Bacterial RNA polymerase, alpha chain
MSSNSFLTPRIVEVHNISPLHAKVVMEPFEHGFGYTLGNALRRVLLSSIP
GCAPTKVSISGVVHEYSTIDGLQEDVVDLILNLKGVVLKLHNNKTQSVLT
LKKSSEGIVTAGDIEATHDVEIVNPDHVIAHITSGGKIEAQITVEKGRGY
WPSANRSKEDKSSSSIGDILLDASFSPIRRVSYAVESARVEQRTDLDKLI
IDIETNGSVDPEEAIRYAAKVLVEQFSFFADLESTPLPTEQPKAPVIDPI
LLRPVDDLELTVRSANCLKVENIFYIGDLIQRTEAELLRTPNLGRKSLNE
IKEVLASRDLSLGMKLENWPPANLENYIKEPGHASS
>NE2046 rpoB, RNA polymerases beta subunit
MSYSFAEKKRIRKSFAKRASILPFPFLLATQIQSYTDFLQAEIAPGKRKN
QGLQAAFNSVFPIESHSNNARLDFISYMLGSPVFDVKECQQRGLTYAAPL
RARVRLTILDKEASKPTVKEVKEQEVYMGEIPLMTDTGSFVVNGTERVIV
SQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDYVYF
RIDRRRKMPVTTLLKAMGYSPAQILADFFEFDHFILVDNKIFFNLIPERL
RGELAGFDIVSEDGKVFVQKDKRITAKHVRDLQQANLTKIPVPEEFLLGK
ILAADLVDKETGEIIALANSEISETLLGRIRQTQSSEISTLFVNDLNYGP
YISQTLRIDETTDQMSAQVAIYRMMRPGEPPTEEAVLALFNGLFYSPERY
DLSVVGRMKFNRRVGREELTGSTTLSNDDIIDVIKILVELRNGRGEIDDI
DHLGNRRVRSVGELAENQFRAGLARVEKAVKERLSQAESENLMPHDFINA
KPVSSAIREFFGSSQLSQFMDQTNPLSEVTHKRRISALGPGGLTRERAGF
EVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARTNEYGFIETPYRMVR
NGRVTEEVVYLSAIEESQYVIAQANANFDQNGVFTDEVVSCRHKNEFTLA
SRDQIEYVDIAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRA
EKPLVGTGIERVVAVHSGTAVRTIRGGVVDYVDASRIVIRVHDAEARAGE
VGVDIYNLTKYTRSNQNTNINQRPIVRMGDVLSRDDVIADGASTDLGELA
LGQNMLIAFMPWNGLNFEDSILISERVVSDDRFTSIHIEELAAVSRDTKL
GTEEITADIPNLSERQRARLDESGIVYIGAEVEAGDVLVGKVTPKSETQL
TPEEKLLRAIFGEKASDVKDTSLHVPAGISGTVIDVQIFTREGVDRDKRS
KQIIADELGRFKKDLADQMRIVEADAFQRAERLLTGKVAAGGPKKLAKNS
TITRDYLENVEKHHWFDIRLVDENTSLQLEQIKDSLVQKRKLFDLAFEEK
HRKLSQGDELPPGVQKMVKVYIAVKRRLQSGDKMAGRHGNKGVISKIVPI
EDMPYMADGTPVDVVLNPLGVPSRMNIGQVLEVHLGWAAKELGKRVNEML
ASQRNVSDIRDFLNKIYNNSGKQEDLTSLEDDEVLALARNLSSGVPFATP
VFDGAHESEIKQMLKLAGLPESGQTTLYDGRTGEAFDRPVTVGYMHVLKL
HHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY
TLQEMLTVKSDDVNGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLGL
DIDLEEH
>NE2045 rpoC, RNA polymerase, alpha subunit
MKALLDLFKQVTQKEEFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFK
PERDGLFCAKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSRIRRE
RMGHIELASPVAHIWFLKSLPSRLGLVLDMTLRDIERVLYFEAYVVTDPG
MTPLNRGQLLTEDDYLNKTEEFGDDFSAVMGAEGIRTLLSNMDIPLEIES
LRLEIQTTGSETKIKKAAKRLKVLEAFNKSGMKPEWMILTVLPVLPPELR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELRAPEIIIRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYS
GRSVIVVGPQLKLHQCGLPKKMALELFKPFIFNKLETMGVASTIKAAKRE
VENESPIVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLH
PLVCAAFNADFDGDQMAVHVPLSLEAQMECRTLMLSTNNVLSPANGDPII
VPSQDIVLGLYYMTRKKIGAQGEGMVFSDISEVVRAYENKVVELNAGIIV
RIKERKKSRSHGEEPVEAITRYETTVGRALISEILPAGLPFSIINKVLKK
KEISKLINASFRLCGLRETVIFADKLMYSGFSYATRGGISICLDDLVTPS
QKNDIIHAAEQEVHEIANQYISGLVTQGERYNKVVDIWGRAGDQVAKAMM
DQLSVEPVTDRETGQVRADKNGQVVTQESFNSIYMMADSGARGSAAQIRQ
LSGMRGLMAKPDGSIIETPITANFREGLNILQYFISTHGARKGLADTALK
TANSGYLTRRLVDVTQDLVITEDDCDTDGGVIMKALVEGGDVIESLRERI
LGRVAATDIVNPETGAVIYAAGMLLDEDAVDEIETCGIDEVKVRTPLTCE
TRYGLCAKCYGRDLGRGMLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGG
AASRTVVANQVESKSNGVIRYSHHIRYVKNAQNELIVISRSGEVYIQDEN
GRERERHKIPYGATLLVQDGEVIKAGQILASWEPHKRPIIAEYAGKVRFE
NVEEGVTVVRQIDEITGLATLVVIDPKRRNVAQSKGLRPLVKFLDENDNE
INIPGSDQPVSITFHVGSIITVRDGQQVNIGEVLARIPQETSKTRDITGG
LPRVAELFEARVPKDVGFLAEATGTVAFGKDTKGKQRLVITDLDGVAHEY
LIPKDKHVTAHDGQVVNKGEVIVDGPIDPHDILRLQGVEALARYISNEVQ
DVYRLQGVRINDKHIEVIVRQMLRRVQIMNAGDSSFIPGEQVERAEVLTE
NEKLIAENKMPATYEYVLLGITKASLSTDSFISAASFQETTRVLTEASIM
GKKDDLRGLKENVIVGRLIPAGTGLSFHNIRKKQRLSESAAYLDTDLTEN
EVTE
>NE0229 rpoD, DNA-dependent RNA polymerase sigma subunits (sigma70/32)
MAKAKVSGSAKKNIVTSTEVTETKSGKSRVETPDNGVKVTGKNAKNTFSA
ETEVVSVKKEATSASRKKSVKAAKSDDDSVLVGQNKNTLLPAEKSEDLGA
VDEVSEKTRVSKRNKSTLSEKQITDLSESAVSVSSDNDIELRRMRLKKLI
MQGKERGYLTYSEINDHLPDDMLDADQIESIISMINDMGISVHDEAPDAE
ALLMSDAATAVTDEDVVEEAEAALSSVDSEFGRTTDPVRMYMREMGSVEL
LTRESEIEIAKRIEDGLRHMIQAISACPTIIENILELAADVENGRLRADE
LVDGFLDDDTDEIMGKEMSEESLDQDFDSEDGEDEQVAAASADMLKMKAE
VLERFAVIRQTYDGMKKIINKKDGRQDKKYKQLQEKISTELMAMRFSAKM
VEKLCDTQRDIVNDIRNCERKIAELCVTRAGMPRNYFIKAFPGNETDIDW
ISSEVESGQPYSQSLEHFRPAVMEQQQKMLELQKQAGIPIKELKEINRRM
TTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNR
ISRQILQETGQEPEPAVLAEKMEMPEEKIRKILKISKEPISMETPIGDDE
DSHLGDFIEDASTMEPADAAVYAGLRTVTKDVLDSLTPREAKVLRMRFGI
EMNTDHTLEEVGRQFDVTRERIRQIEAKALRKLRHPARSDRLRSFLDSGN
S
>NE2331 rpoE1, Sigma factor, ECF subfamily
MSDREIDQQLVEQVQRGDKRAFDLLVIKYQRRLARLLSRFIRDPAEVEDI
TQETFIKAYRALPSFRGDSAFYTWLYRIGVNTAKNFLVSQGRKLPATVNG
FGTEEAENFEGADQLREVNTPESELMGKQVAQTVNQALEALPEELRTAII
LREIEGLSYEEIADIMNCPIGTVRSRIFRAREAVADKLRPLLGTDKSKRW
>NE0584 rpoH, Sigma-70 factor family
MNEIMALPVMAGGDLDSYIRATSSFPVLSREEEASLAKRMREEGDVNAAH
QLVLSHLRVVVTIARGYLGYGLPHADLIQEGNIGLMKAVRRFDPERGVRL
ISFAIHWIRAEIHEFIMRNWRLVKIATTKQQRKLFFNLRSMKKGLDTMSQ
AEVASMAEQLGVKAEEVVEMETRFSGRDISLEPVTDSDEDDFSPIAWLTD
GSDPSRELEKEQLERLTHARLKNSLDSLDERSRRIIEARWLREDKAATLH
ELADELGVSAERVRQIEAKAMKKMRAEIAI
>NE0062 rpoN1, Sigma-54 factor family
MKPTLQLKLNTGLTLTPQLQQSIRLLQLSTLELNQEITRLVQENPLLELD
EGIDQDGFETGGPDISLSPSDSSAATESNGISEIGKNTDIQSDWPDDPLY
ADQEFFFDTRRRSDEDHDQDFSRLISKPVSLREHLLSQISLGQYCERSKK
IAELLVDSLNDDGYLSQDLDELAELLPPELEISTADLESALDYIQQLDPP
GVGARNLQECLSLQLKALPGNTPLRDEALKLVNGHLESFAAKNFQLLKKV
LDCNETCLQSIYQLITQLNPKPGDDFNTTTARHVIPDVIVTRSDSGWGVR
LNSDSVPRVRINSLYAGILKHHRTEATQMLMGQLKEARWLVRNLDQRMDT
ILRVSQAIVDCQQAFLEQGETAIRPLVMREIAVTLGLHESTISRVTTQKY
MRTPHGIFELKYFFGSHIPAERGEAHSAIAIRGLIKRLIQDEDRRKPLND
SQISQMLAQQGIVIARRTVAKYREFMHIPPTNLRKTL
>NE2255 rpoZ, RNA polymerase omega subunit
MARITVEDCLEVIPNRFDMTLAATVRARQVSVGSTPMIDSERDKPIVIAL
RELAQKKYGEEILNTLR
>NE2537 sinR, Helix-turn-helix motif
MPSPLGDKIRALRKQKKLSLEQLAELTDSSKSYIWELENKDDPKPSAEKI
GKIATVLEVTTEFLLTESATTPDEEVLDEAFFRKYKNMSEPDKKKIRKIL
DAWEDE
>NE1998 sohA,prlF, HtaR suppressor protein
MPTTLEIESTLTDRYQTTVPESVRRALQLGKRDKIHYTIRPGGEVVLTRA
EPPEGDDPVIGQFLTFLALDIASHPERLQAVDASLVQHLQSLVGGIQVDL
NAALSVDDA
>NE2473 spoOJ, ParB-like nuclease domain:ParB-like partition protein
MVKPKGLGRGLDALLAGNPPETDSLQNLDVGLLQSGKYQPRTRMDEASLH
DLAESIKAQGIMQPILVRPLMMGGYEIIAGERRWRAAQIAGLEQIPAIVR
EVPDESALALSLIENIQREDLNPLEAALGIQRLIEEFGMTHQTAGQALGY
SRSAISNLLRLLNLAAPVQDLIMQGEIDMGHGRALLVLDAGKQLEVAHLI
IQKQLSVRETENLLKRMNEMPSVKKRSFPDRDLLRLQEDISARLGANVII
KPGKKGTGNVVIHYASLEQLDGILAKF
>NE0368 spoT, spoT; bifunctional enzyme (p)ppgpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyro
MQNPILNDSDDSAVISPEAELLISEVSQYLKPEDLALLKSAYFFSQKAHS
GQFRKSGEPYISHPITVARILGELRLDAVTLTAALLHDVVEDTGILKQEI
SERFGSSVAELVDGVSKLDKIRFQTQADMQAENFRKMLLAMAQDVRVILI
KLADRLHNMRTLEVMSPEKQHRIAQETLEIYAPIAHRLGLENIYQELQEL
GFCFSYPTRYKVLLKATKAARGNRREVVGKILDAIKQRLQEAELDAVVTG
REKHLYSIYKKMAEKHLSFSDVLDIYGFRVIVRDVSSCYVALGALHSLYK
PIPGKFKDYIAIPKPNGYQSLHSTLLGPYGLPIEIQIRTHEMHHIAEAGV
ASHWLYKSKNTDAGIDDLHMKANQWMKGLLETLNDSSDSLEFLEHLKVDL
FPGEVYVFTPQGKILTLPRGATVVDFAYAVHTDVGNCCVAARINGEITPL
RTRLKSGDRVEIITAPAAKPNPIWLSYVATGRARSSIRYFLRTIQYNESV
KLGERLLNQALHSFGVNPDAIEPSQWEKLVKESKAKSKEALLADIALGKQ
LAAVLAKRLAVPGESVSNIQSNNSITILGTEGMAVKFARCCHPIPGDGIV
GLIKKDQGLVIHMQDCPAVIRIKDHKNMENQLDVVWGTDIDRTFPVSIFM
TVVNKSGVLARVTAEIAKADSNIDDITLENDKDYTTMRFILQTRDRQHLA
QIFRRLKHIDEIVKMGRIKNL
>NE0344 tctD, possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding
MRILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVV
DIGLPDIDGLTLVQRLRHRKMCLPVLVLTARGSMEDTIAGLDIGADDYMT
KPFRLPELIARIRALIRRAHSITSTELQHDRLVLNTGSYTATLNDQPLLL
TRREWTILETLLMASPRVVSKDKLLQNLTGWDKNITPNAIEVHVSRLRAK
IAPGGIEIRTVRGIGYRIDQSHS
>NE2197 tex, S1 RNA binding domain
MTSTAPSAVSEPTQKKIINTIAEELDVAPRQISAAVMLLDEGATVPFIAR
YRKEATGNLDDTQLRLLEERLAYLRELEARRQVILASIEEQGKLTDELRH
AIDQAATRQLLEDIYLPYRPKRRTRAQIAREAGLEPLADTLLADPTLDPE
QEAAKYIKVVPAAEGVEAINVPDTKTALEGARDILAERFAETADLLVVLR
SKLWQEGVVTSTVVAGQEKAEEEKFRDYYAYTEPVRLIPSHRALALFRGR
ALGVLRIDLDLDETARESIPHPCIAMIATHFGIENRDRKADKWLGDVCQW
AWRVKVHLHLTTELLLQVREAAETEAIRIFSRNLRELLLAAPAGPKAVLG
LDPGYRTGCKVAVVDATGKLLETVTIYPHQPRNDWQGSLATLVQLVHRHG
VELISIGNGTASRETDKLATEVVRLVAEQSPESKLTKIVVSEAGASVYSA
SALAAAEFSDLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVN
QRILARSLDATVEDCVNAVGVDVNTASAPLLAQVSGLNRVLAQNIVSYRD
AHGPFSNRQTLLKVPRVGEKTFEQAAGFLRINDGDNPLDRSAVHPEAYPV
VERILARLKKGIGQVMGQPGTLKGLSAEEFTDETFGLPTVRDILTELEKP
GRDPRPEFKTAVFQEGIESITDLQPGMILEGVVTNVAAFGAFIDIGVHQD
GLVHVSALANKFIKDPHQIVKPGQVVKVRVLTVDAVRQRISLTMRIDDIP
ETISQPETRKARPDDRQSRRGSRSLQTASRTGKSEPAGALALALARAKEK
R
>NE0928 yhdE, Uncharacterized protein family UPF0074
MRLTNYSDYALRILTYLGLKREELSTITEIADCYGISRNHVVKIVHHLGQ
LGYVDTLRGKNGGIRLAHAPEKINIGEVIRHTETSMDIVECFSNQNSCII
GCSCVLRTAISEALSAFMAVLDDYTLADLIAPRRQLSRKLHVMQISDSLS
D