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Gene list

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COG category: Transcription
Organism: Nitrosomonas europaea ATCC 19718, ATCC 19718

Number of genes found: 121

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Nitrosomonas europaea ATCC 19718, ATCC 19718
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA NE1432 DUF193RecName: Full=Transcriptional repressor NrdR; chromosome CDS1560726 480 - 0.525
NA NE1355 Cro repressor helix-turn-helix motif:Helix-turn-helix motifSubName: Full=Cro repressor helix-turn-helix motif:Helix-turn-helix motif; chromosome CDS1480914 321 - 0.386293
NA NE0818 putative sigma-70 factor, ECF subfamilySubName: Full=Putative sigma-70 factor, ECF subfamily; chromosome CDS890344 510 - 0.511765
NA NE1101 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS1194076 510 + 0.578431
NA NE1617 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS1745225 561 + 0.641711
NA NE1729 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1864671 663 + 0.514329
NA NE0383 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS436075 1494 - 0.635877
NA NE2507 AraC type helix-turn-helix:ThiJ/PfpI familySubName: Full=AraC type helix-turn-helix:ThiJ/PfpI family; chromosome CDS2740829 963 - 0.650052
NA NE1265 GCN5-related N-acetyltransferaseSubName: Full=GCN5-related N-acetyltransferase; chromosome CDS1385550 510 - 0.541176
NA NE0263 Bacterial regulatory proteins, ArsR familySubName: Full=Bacterial regulatory proteins, ArsR family; chromosome CDS297181 423 + 0.449173
NA NE1079 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS1164645 519 - 0.554913
NA NE1587 Helix-turn-helix motifSubName: Full=Helix-turn-helix motif; chromosome CDS1715875 372 - 0.422043
NA NE1946 Bacterial regulatory proteins, TetR familySubName: Full=Bacterial regulatory proteins, TetR family; chromosome CDS2099645 579 + 0.488774
NA NE2311 possible helicase (Snf2/Rad54 family)SubName: Full=Possible helicase (Snf2/Rad54 family); chromosome CDS2508925 2898 - 0.587647
NA NE1192 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS1293487 528 - 0.611742
NA NE2153 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2337473 657 + 0.496195
NA NE0189 Helix-turn-helix motifSubName: Full=Helix-turn-helix motif; chromosome CDS227840 309 - 0.495146
NA NE1524 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1655769 375 + 0.488
NA NE0547 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS591808 600 + 0.478333
NA NE0293 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS320270 318 - 0.578616
NA NE2514 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2747428 915 + 0.601093
NA NE1099 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS1193020 504 - 0.527778
NA NE2256 GCN5-related N-acetyltransferaseSubName: Full=GCN5-related N-acetyltransferase; chromosome CDS2446050 414 - 0.516908
NA NE0300 Bacterial regulatory proteins, TetR familySubName: Full=Bacterial regulatory proteins, TetR family; chromosome CDS329852 642 - 0.509346
NA NE1311 Helix-turn-helix motifSubName: Full=Helix-turn-helix motif; chromosome CDS1430801 264 - 0.587121
NA NE0729 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainSubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; chromosome CDS789105 693 - 0.548341
NA NE1519 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1652040 288 - 0.444444
NA NE0980 putative sigma-70 factor, ECF subfamilySubName: Full=Putative sigma-70 factor, ECF subfamily; chromosome CDS1065883 504 - 0.511905
NA NE0667 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainSubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; chromosome CDS722764 687 - 0.557496
NA NE1114 Bacterial regulatory proteins, TetR familySubName: Full=Bacterial regulatory proteins, TetR family; chromosome CDS1206752 615 + 0.500813
NA NE0557 possible sigma-70 factor, ECF subfamilySubName: Full=Possible sigma-70 factor, ECF subfamily; chromosome CDS602989 660 + 0.506061
NA NE2519 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2751702 906 + 0.619205
NA NE1041 possible sigma-70 factor, ECF subfamilySubName: Full=Possible sigma-70 factor, ECF subfamily; chromosome CDS1128429 474 - 0.512658
NA NE0443 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS481890 411 + 0.518248
NA NE1544 Bacterial regulatory protein, LysR familySubName: Full=Bacterial regulatory protein, LysR family; chromosome CDS1681762 918 - 0.534858
NA NE1350 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1476508 246 - 0.46748
NA NE0917 probable RNA polymerase sigma factor transcription regulatorSubName: Full=Probable RNA polymerase sigma factor transcription regulator; chromosome CDS998279 501 + 0.487026
NA NE2568 Bacterial regulatory proteins, ArsR familySubName: Full=Bacterial regulatory proteins, ArsR family; chromosome CDS2807279 372 - 0.486559
NA NE2498 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2729205 807 - 0.491945
NA NE0951 Bacterial regulatory proteins, MerR familySubName: Full=Bacterial regulatory proteins, MerR family; chromosome CDS1036708 393 - 0.430025
NA NE0514 possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainSubName: Full=Possible baeR Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; chromosome CDS552429 690 - 0.517391
NA NE0541 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS584746 501 + 0.502994
NA NE0880 probable ATP-dependent DNA helicase-related proteinSubName: Full=Probable ATP-dependent DNA helicase-related protein; chromosome CDS959532 1941 - 0.516744
NA NE2377 BolA-like proteinSubName: Full=BolA-like protein; chromosome CDS2586274 252 - 0.496032
NA NE0533 putative sigma-70 factor, ECF subfamilySubName: Full=Putative sigma-70 factor, ECF subfamily; chromosome CDS571180 591 + 0.522843
NA NE2106 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2291972 456 + 0.438596
NA NE1821 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1968379 843 + 0.671412
NA NE1096 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS1188693 516 - 0.552326
NA NE0320 GCN5-related N-acetyltransferaseSubName: Full=GCN5-related N-acetyltransferase; chromosome CDS353453 531 + 0.516008
NA NE1452 Uncharacterized protein family UPF0074SubName: Full=Uncharacterized protein family UPF0074; chromosome CDS1584280 480 - 0.522917
NA NE1668 DUF179RecName: Full=UPF0301 protein NE1668; chromosome CDS1804711 609 - 0.513957
NA NE2486 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS2713813 642 - 0.546729
NA NE2544 Helix-turn-helix motifSubName: Full=Helix-turn-helix motif; chromosome CDS2782876 669 - 0.536622
NA NE1217 putative sigma-70 factor, ECF subfamilySubName: Full=Putative sigma-70 factor, ECF subfamily; chromosome CDS1325996 513 + 0.555556
NA NE1634 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1765533 1113 - 0.528302
NA NE0128 probable sigma-70 factor, ECF subfamilySubName: Full=Probable sigma-70 factor, ECF subfamily; chromosome CDS156976 534 - 0.490637
NA NE0896 Helix-turn-helix motifSubName: Full=Helix-turn-helix motif; chromosome CDS974682 738 + 0.52439
NA NE0186 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS224625 285 - 0.501754
NA NE0937 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-bindingSubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; chromosome CDS1023190 738 + 0.48103
NA NE2511 AraC type helix-turn-helix:ThiJ/PfpI familySubName: Full=AraC type helix-turn-helix:ThiJ/PfpI family; chromosome CDS2744407 1014 - 0.639053
NA NE1625 Ribonuclease II domainSubName: Full=Ribonuclease II domain; chromosome CDS1756638 1860 + 0.541936
NA NE1807 putative ATP-dependent RNA helicase proteinSubName: Full=Putative ATP-dependent RNA helicase protein; chromosome CDS1954496 1374 + 0.53639
NA NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainSubName: Full=Possible phoP Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; chromosome CDS1538550 690 - 0.55942
NA NE1071 probable sigma-70 factor, ECF subfamilySubName: Full=Probable sigma-70 factor, ECF subfamily; chromosome CDS1158053 537 - 0.564246
NA NE0318 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS351852 798 + 0.461153
NA NE0118 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS146126 264 - 0.473485
NA NE1313 Response regulator receiver domain:Helix-turn-helix Fis-typeSubName: Full=Response regulator receiver domain:Helix-turn-helix Fis-type; chromosome CDS1432854 534 - 0.520599
NA NE2138 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS2323604 510 + 0.509804
NA NE0262 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS296679 243 - 0.559671
NA NE1086 probable sigma-70 factor, ECF subfamilySubName: Full=Probable sigma-70 factor, ECF subfamily; chromosome CDS1173454 513 - 0.532164
NA NE0554 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS598775 594 + 0.503367
NA NE0722 AraC type helix-turn-helixSubName: Full=AraC type helix-turn-helix; chromosome CDS778023 1053 - 0.562203
NA NE0787 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS855289 270 - 0.474074
NA NE1580 Helix-turn-helix protein, CopG familySubName: Full=Helix-turn-helix protein, CopG family; chromosome CDS1712336 243 - 0.530864
NA NE1992 Sigma factor, ECF subfamilySubName: Full=Sigma factor, ECF subfamily; chromosome CDS2152247 540 - 0.518519
NA NE2525 possible ATP-dependent DNA helicase RecG-related proteinSubName: Full=Possible ATP-dependent DNA helicase RecG-related protein; chromosome CDS2759505 1887 + 0.605723
NA NE1224 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1333144 264 + 0.568182
NA NE2478 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2703064 324 - 0.466049
NA NE1103 GCN5-related N-acetyltransferaseSubName: Full=GCN5-related N-acetyltransferase; chromosome CDS1195700 495 - 0.557576
birA NE2459 putative BirA bifunctional proteinRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS2685107 771 - 0.547341
cbbR, rbcR NE1922 Bacterial regulatory protein, LysR familySubName: Full=Bacterial regulatory protein, LysR family; chromosome CDS2076232 930 + 0.486022
cbl NE0572 Bacterial regulatory protein, LysR familySubName: Full=Bacterial regulatory protein, LysR family; chromosome CDS621048 918 - 0.496732
cspD2 NE1731 Cold-shock DNA-binding domainSubName: Full=Cold-shock DNA-binding domain; chromosome CDS1866714 204 - 0.426471
cspD2 NE1312 Cold-shock DNA-binding domainSubName: Full=Cold-shock DNA-binding domain; chromosome CDS1431744 204 - 0.387255
cysB NE0854 Bacterial regulatory protein, LysR familySubName: Full=Bacterial regulatory protein, LysR family; chromosome CDS930708 957 - 0.444096
fecI NE2435 Probable fecI Specialized sigma subunits of RNA polymeraseSubName: Full=Probable fecI Specialized sigma subunits of RNA polymerase; chromosome CDS2657490 558 - 0.587814
fis NE0875 probable factor-for-inversion-stimulation transcription regulator proteinSubName: Full=Probable factor-for-inversion-stimulation transcription regulator protein; chromosome CDS954360 243 + 0.444444
fliA NE2491 Sigma-70 factor familyRecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; chromosome CDS2720090 711 + 0.523207
greA NE1660 Prokaryotic transcription elongation factor GreA/GreBRecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS1793869 522 - 0.457854
greB NE1848 Prokaryotic transcription elongation factor GreA/GreBRecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; chromosome CDS1996345 549 - 0.533698
hrcA NE1477 Negative regulator of class I heat shock proteinRecName: Full=Heat-inducible transcription repressor HrcA; chromosome CDS1612723 1017 - 0.494592
merD NE0838 Bacterial regulatory proteins, MerR familySubName: Full=Bacterial regulatory proteins, MerR family; chromosome CDS916254 366 - 0.674863
merR NE0843 Bacterial regulatory proteins, MerR familySubName: Full=Bacterial regulatory proteins, MerR family; chromosome CDS919523 426 + 0.58216
metR NE1435 Bacterial regulatory protein, LysR familySubName: Full=Bacterial regulatory protein, LysR family; chromosome CDS1563479 975 - 0.540513
mfd NE0008 mfd: transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS8100 3465 - 0.531313
nusA NE0760 S1 RNA binding domain:KH domain:Type 1 KH domainSubName: Full=S1 RNA binding domain:KH domain:Type 1 KH domain; chromosome CDS824076 1473 + 0.510523
nusB NE2558 Antitermination protein NusBRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS2796450 504 + 0.531746
nusG NE2051 nusG; Bacterial transcription antiterminationRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS2227018 534 - 0.382022
phoB NE2131 possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-bindingSubName: Full=Possible phoB Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; chromosome CDS2313178 723 - 0.539419
recG NE1850 RecG-like helicasesSubName: Full=RecG-like helicases; EC=3.6.1.-; chromosome CDS1997828 2058 - 0.556851
rfaH NE0468 putative transcriptional activatorRecName: Full=Transcription antitermination protein RfaH; chromosome CDS510537 498 + 0.51004
rhlE NE2040 rhlE; ATP-dependent RNA helicase RhlESubName: Full=RhlE ATP-dependent RNA helicase RhlE; chromosome CDS2209232 1497 - 0.504342
rho NE1035 rho; Transcription termination factorRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS1122604 1260 + 0.476984
rnc NE2324 rnc; ribonuclease III (RNAse III) proteinRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS2524771 738 - 0.509485
rnk NE2130 Prokaryotic transcription elongation factor GreA/GreBSubName: Full=Prokaryotic transcription elongation factor GreA/GreB; chromosome CDS2312486 414 - 0.528986
rnr NE0350 rnr; exoribonuclease RNAse R (vacB protein)RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS392344 2202 + 0.489101
rpoA NE0426 Bacterial RNA polymerase, alpha chainRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS465678 1011 + 0.406528
rpoB NE2046 RNA polymerases beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2220094 4074 - 0.448454
rpoC NE2045 RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS2215733 4215 - 0.458837
rpoD NE0229 DNA-dependent RNA polymerase sigma subunits (sigma70/32)RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; chromosome CDS260721 2256 + 0.464096
rpoE1 NE2331 Sigma factor, ECF subfamilyRecName: Full=RNA polymerase sigma factor; chromosome CDS2531293 603 - 0.472637
rpoH NE0584 Sigma-70 factor familyRecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; chromosome CDS633671 843 + 0.538553
rpoN1 NE0062 Sigma-54 factor familyRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS81662 1464 - 0.494536
rpoZ NE2255 RNA polymerase omega subunitRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS2445664 204 + 0.504902
sinR NE2537 Helix-turn-helix motifSubName: Full=Helix-turn-helix motif; chromosome CDS2776868 321 + 0.563863
sohA,prlF NE1998 HtaR suppressor proteinSubName: Full=HtaR suppressor protein; chromosome CDS2159012 330 + 0.569697
spoOJ NE2473 ParB-like nuclease domain:ParB-like partition proteinSubName: Full=ParB-like nuclease domain:ParB-like partition protein; chromosome CDS2698089 834 - 0.529976
spoT NE0368 spoT; bifunctional enzyme (p)ppgpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyroSubName: Full=SpoT bifunctional enzyme (P)ppgpp synthetase II and guanosine-3,5-bisdiphosphate 3-pyro; EC=2.7.6.5; chromosome CDS411527 2166 - 0.487996
tctD NE0344 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-bindingSubName: Full=Possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding; chromosome CDS383765 672 - 0.575893
tex NE2197 S1 RNA binding domainSubName: Full=S1 RNA binding domain; chromosome CDS2386220 2406 - 0.5532
yhdE NE0928 Uncharacterized protein family UPF0074SubName: Full=Uncharacterized protein family UPF0074; chromosome CDS1011569 456 + 0.486842