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2024-05-01 02:46:41

Gene list

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COG category: Transcription
Organism: Nitrosomonas europaea ATCC 19718, ATCC 19718

Number of genes found: 121

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Nitrosomonas europaea ATCC 19718, ATCC 19718
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA NE1668 DUF179chromosome CDS1804711 609 - 0.513957
NA NE1071 probable sigma-70 factor, ECF subfamilychromosome CDS1158053 537 - 0.564246
NA NE2511 AraC type helix-turn-helix:ThiJ/PfpI familychromosome CDS2744407 1014 - 0.639053
NA NE1409 possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS1538550 690 - 0.55942
NA NE2138 Sigma factor, ECF subfamilychromosome CDS2323604 510 + 0.509804
NA NE0729 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS789105 693 - 0.548341
NA NE0818 putative sigma-70 factor, ECF subfamilychromosome CDS890344 510 - 0.511765
NA NE0547 Sigma factor, ECF subfamilychromosome CDS591808 600 + 0.478333
NA NE0880 probable ATP-dependent DNA helicase-related proteinchromosome CDS959532 1941 - 0.516744
NA NE1946 Bacterial regulatory proteins, TetR familychromosome CDS2099645 579 + 0.488774
NA NE1265 GCN5-related N-acetyltransferasechromosome CDS1385550 510 - 0.541176
NA NE0951 Bacterial regulatory proteins, MerR familychromosome CDS1036708 393 - 0.430025
NA NE1821 conserved hypothetical proteinchromosome CDS1968379 843 + 0.671412
NA NE1313 Response regulator receiver domain:Helix-turn-helix Fis-typechromosome CDS1432854 534 - 0.520599
NA NE1617 Sigma factor, ECF subfamilychromosome CDS1745225 561 + 0.641711
NA NE2311 possible helicase (Snf2/Rad54 family)chromosome CDS2508925 2898 - 0.587647
NA NE1580 Helix-turn-helix protein, CopG familychromosome CDS1712336 243 - 0.530864
NA NE1807 putative ATP-dependent RNA helicase proteinchromosome CDS1954496 1374 + 0.53639
NA NE2106 hypothetical proteinchromosome CDS2291972 456 + 0.438596
NA NE2377 BolA-like proteinchromosome CDS2586274 252 - 0.496032
NA NE1096 Sigma factor, ECF subfamilychromosome CDS1188693 516 - 0.552326
NA NE1452 Uncharacterized protein family UPF0074chromosome CDS1584280 480 - 0.522917
NA NE0383 conserved hypothetical proteinchromosome CDS436075 1494 - 0.635877
NA NE0189 Helix-turn-helix motifchromosome CDS227840 309 - 0.495146
NA NE1350 conserved hypothetical proteinchromosome CDS1476508 246 - 0.46748
NA NE0118 hypothetical proteinchromosome CDS146126 264 - 0.473485
NA NE0937 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-bindingchromosome CDS1023190 738 + 0.48103
NA NE1114 Bacterial regulatory proteins, TetR familychromosome CDS1206752 615 + 0.500813
NA NE0533 putative sigma-70 factor, ECF subfamilychromosome CDS571180 591 + 0.522843
NA NE1041 possible sigma-70 factor, ECF subfamilychromosome CDS1128429 474 - 0.512658
NA NE2256 GCN5-related N-acetyltransferasechromosome CDS2446050 414 - 0.516908
NA NE0443 hypothetical proteinchromosome CDS481890 411 + 0.518248
NA NE1103 GCN5-related N-acetyltransferasechromosome CDS1195700 495 - 0.557576
NA NE2525 possible ATP-dependent DNA helicase RecG-related proteinchromosome CDS2759505 1887 + 0.605723
NA NE1587 Helix-turn-helix motifchromosome CDS1715875 372 - 0.422043
NA NE0128 probable sigma-70 factor, ECF subfamilychromosome CDS156976 534 - 0.490637
NA NE1355 Cro repressor helix-turn-helix motif:Helix-turn-helix motifchromosome CDS1480914 321 - 0.386293
NA NE0300 Bacterial regulatory proteins, TetR familychromosome CDS329852 642 - 0.509346
NA NE0541 Sigma factor, ECF subfamilychromosome CDS584746 501 + 0.502994
NA NE2507 AraC type helix-turn-helix:ThiJ/PfpI familychromosome CDS2740829 963 - 0.650052
NA NE2486 Sigma factor, ECF subfamilychromosome CDS2713813 642 - 0.546729
NA NE2498 hypothetical proteinchromosome CDS2729205 807 - 0.491945
NA NE1311 Helix-turn-helix motifchromosome CDS1430801 264 - 0.587121
NA NE0667 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS722764 687 - 0.557496
NA NE0787 hypothetical proteinchromosome CDS855289 270 - 0.474074
NA NE2544 Helix-turn-helix motifchromosome CDS2782876 669 - 0.536622
NA NE0293 hypothetical proteinchromosome CDS320270 318 - 0.578616
NA NE2519 conserved hypothetical proteinchromosome CDS2751702 906 + 0.619205
NA NE1217 putative sigma-70 factor, ECF subfamilychromosome CDS1325996 513 + 0.555556
NA NE0320 GCN5-related N-acetyltransferasechromosome CDS353453 531 + 0.516008
NA NE1992 Sigma factor, ECF subfamilychromosome CDS2152247 540 - 0.518519
NA NE1101 Sigma factor, ECF subfamilychromosome CDS1194076 510 + 0.578431
NA NE0722 AraC type helix-turn-helixchromosome CDS778023 1053 - 0.562203
NA NE1224 hypothetical proteinchromosome CDS1333144 264 + 0.568182
NA NE1519 conserved hypothetical proteinchromosome CDS1652040 288 - 0.444444
NA NE1192 Sigma factor, ECF subfamilychromosome CDS1293487 528 - 0.611742
NA NE1625 Ribonuclease II domainchromosome CDS1756638 1860 + 0.541936
NA NE1544 Bacterial regulatory protein, LysR familychromosome CDS1681762 918 - 0.534858
NA NE0917 probable RNA polymerase sigma factor transcription regulatorchromosome CDS998279 501 + 0.487026
NA NE1099 Sigma factor, ECF subfamilychromosome CDS1193020 504 - 0.527778
NA NE2478 hypothetical proteinchromosome CDS2703064 324 - 0.466049
NA NE2514 conserved hypothetical proteinchromosome CDS2747428 915 + 0.601093
NA NE2568 Bacterial regulatory proteins, ArsR familychromosome CDS2807279 372 - 0.486559
NA NE0554 Sigma factor, ECF subfamilychromosome CDS598775 594 + 0.503367
NA NE0514 possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS552429 690 - 0.517391
NA NE0980 putative sigma-70 factor, ECF subfamilychromosome CDS1065883 504 - 0.511905
NA NE0262 conserved hypothetical proteinchromosome CDS296679 243 - 0.559671
NA NE0186 conserved hypothetical proteinchromosome CDS224625 285 - 0.501754
NA NE0318 conserved hypothetical proteinchromosome CDS351852 798 + 0.461153
NA NE1432 DUF193chromosome CDS1560726 480 - 0.525
NA NE1634 hypothetical proteinchromosome CDS1765533 1113 - 0.528302
NA NE2153 conserved hypothetical proteinchromosome CDS2337473 657 + 0.496195
NA NE1524 conserved hypothetical proteinchromosome CDS1655769 375 + 0.488
NA NE1729 conserved hypothetical proteinchromosome CDS1864671 663 + 0.514329
NA NE1086 probable sigma-70 factor, ECF subfamilychromosome CDS1173454 513 - 0.532164
NA NE0263 Bacterial regulatory proteins, ArsR familychromosome CDS297181 423 + 0.449173
NA NE0896 Helix-turn-helix motifchromosome CDS974682 738 + 0.52439
NA NE0557 possible sigma-70 factor, ECF subfamilychromosome CDS602989 660 + 0.506061
NA NE1079 Sigma factor, ECF subfamilychromosome CDS1164645 519 - 0.554913
birA NE2459 putative BirA bifunctional proteinchromosome CDS2685107 771 - 0.547341
cbbR, rbcR NE1922 Bacterial regulatory protein, LysR familychromosome CDS2076232 930 + 0.486022
cbl NE0572 Bacterial regulatory protein, LysR familychromosome CDS621048 918 - 0.496732
cspD2 NE1731 Cold-shock DNA-binding domainchromosome CDS1866714 204 - 0.426471
cspD2 NE1312 Cold-shock DNA-binding domainchromosome CDS1431744 204 - 0.387255
cysB NE0854 Bacterial regulatory protein, LysR familychromosome CDS930708 957 - 0.444096
fecI NE2435 Probable fecI Specialized sigma subunits of RNA polymerasechromosome CDS2657490 558 - 0.587814
fis NE0875 probable factor-for-inversion-stimulation transcription regulator proteinchromosome CDS954360 243 + 0.444444
fliA NE2491 Sigma-70 factor familychromosome CDS2720090 711 + 0.523207
greA NE1660 Prokaryotic transcription elongation factor GreA/GreBchromosome CDS1793869 522 - 0.457854
greB NE1848 Prokaryotic transcription elongation factor GreA/GreBchromosome CDS1996345 549 - 0.533698
hrcA NE1477 Negative regulator of class I heat shock proteinchromosome CDS1612723 1017 - 0.494592
merD NE0838 Bacterial regulatory proteins, MerR familychromosome CDS916254 366 - 0.674863
merR NE0843 Bacterial regulatory proteins, MerR familychromosome CDS919523 426 + 0.58216
metR NE1435 Bacterial regulatory protein, LysR familychromosome CDS1563479 975 - 0.540513
mfd NE0008 mfd: transcription-repair coupling factorchromosome CDS8100 3465 - 0.531313
nusA NE0760 S1 RNA binding domain:KH domain:Type 1 KH domainchromosome CDS824076 1473 + 0.510523
nusB NE2558 Antitermination protein NusBchromosome CDS2796450 504 + 0.531746
nusG NE2051 nusG; Bacterial transcription antiterminationchromosome CDS2227018 534 - 0.382022
phoB NE2131 possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-bindingchromosome CDS2313178 723 - 0.539419
recG NE1850 RecG-like helicaseschromosome CDS1997828 2058 - 0.556851
rfaH NE0468 putative transcriptional activatorchromosome CDS510537 498 + 0.51004
rhlE NE2040 rhlE; ATP-dependent RNA helicase RhlEchromosome CDS2209232 1497 - 0.504342
rho NE1035 rho; Transcription termination factorchromosome CDS1122604 1260 + 0.476984
rnc NE2324 rnc; ribonuclease III (RNAse III) proteinchromosome CDS2524771 738 - 0.509485
rnk NE2130 Prokaryotic transcription elongation factor GreA/GreBchromosome CDS2312486 414 - 0.528986
rnr NE0350 rnr; exoribonuclease RNAse R (vacB protein)chromosome CDS392344 2202 + 0.489101
rpoA NE0426 Bacterial RNA polymerase, alpha chainchromosome CDS465678 1011 + 0.406528
rpoB NE2046 RNA polymerases beta subunitchromosome CDS2220094 4074 - 0.448454
rpoC NE2045 RNA polymerase, alpha subunitchromosome CDS2215733 4215 - 0.458837
rpoD NE0229 DNA-dependent RNA polymerase sigma subunits (sigma70/32)chromosome CDS260721 2256 + 0.464096
rpoE1 NE2331 Sigma factor, ECF subfamilychromosome CDS2531293 603 - 0.472637
rpoH NE0584 Sigma-70 factor familychromosome CDS633671 843 + 0.538553
rpoN1 NE0062 Sigma-54 factor familychromosome CDS81662 1464 - 0.494536
rpoZ NE2255 RNA polymerase omega subunitchromosome CDS2445664 204 + 0.504902
sinR NE2537 Helix-turn-helix motifchromosome CDS2776868 321 + 0.563863
sohA,prlF NE1998 HtaR suppressor proteinchromosome CDS2159012 330 + 0.569697
spoOJ NE2473 ParB-like nuclease domain:ParB-like partition proteinchromosome CDS2698089 834 - 0.529976
spoT NE0368 spoT; bifunctional enzyme (p)ppgpp synthetase II and guanosine-3',5'-bisdiphosphate 3'-pyrochromosome CDS411527 2166 - 0.487996
tctD NE0344 possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-bindingchromosome CDS383765 672 - 0.575893
tex NE2197 S1 RNA binding domainchromosome CDS2386220 2406 - 0.5532
yhdE NE0928 Uncharacterized protein family UPF0074chromosome CDS1011569 456 + 0.486842