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2024-05-09 01:11:23

Gene list

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COG category: Transcription
Organism: Yersinia pestis CO92, CO92

Number of genes found: 246

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Yersinia pestis CO92, CO92
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
YPO0010 putative GntR-famly transcriptional regulatorchromosome CDS11016 690 - 0.44058
YPO0032 conserved membrane proteinchromosome CDS41407 924 + 0.50974
YPO0084 possible transcriptional regulatorchromosome CDS94892 1047 + 0.511939
YPO0134 conserved hypothetical proteinchromosome CDS145135 2376 - 0.541667
YPO0165 LacI-family transcriptional regulatorchromosome CDS183067 987 - 0.513678
YPO0236 MerR-family transcriptional regulatorchromosome CDS235781 426 + 0.453052
YPO0255 putative two-component response regulatorchromosome CDS255039 633 - 0.450237
YPO0260 putative AraC-family regulatory proteinchromosome CDS261876 621 + 0.417069
YPO0276 putative LysR-family transcriptional regulatorchromosome CDS275398 987 - 0.383992
YPO0288 putative exported proteinchromosome CDS289431 489 - 0.476483
YPO0341 putative TetR-family regulatory proteinchromosome CDS348976 576 - 0.498264
YPO0379 conserved hypothetical proteinchromosome CDS394281 426 + 0.446009
YPO0401 putative transcriptional regulatorchromosome CDS418345 876 + 0.400685
YPO0456 putative right origin-binding proteinchromosome CDS479842 867 - 0.469435
YPO0466 hypothetical proteinchromosome CDS493618 2448 - 0.35335
YPO0517 RNA polymerase associated helicasechromosome CDS556946 2907 - 0.519436
YPO0592 putative kinase proteinchromosome CDS640514 1500 - 0.49
YPO0611 LacI-family regulatory proteinchromosome CDS671532 987 + 0.47923
YPO0631 LysR-family regulatory proteinchromosome CDS690801 933 + 0.554127
YPO0669 LysR-family regulatory proteinchromosome CDS728935 912 + 0.530702
YPO0679 AraC-family regulatory proteinchromosome CDS741169 894 + 0.485459
YPO0736 putative regulatory proteinchromosome CDS793709 1047 - 0.452722
YPO0758 LacI-family regulatory proteinchromosome CDS812567 996 + 0.458835
YPO0799 LysR-family transcriptional regulatory proteinchromosome CDS879311 909 - 0.49945
YPO0804 putative regulatory membrane proteinchromosome CDS884191 717 - 0.333333
YPO0831 DeoR-family regulatory proteinchromosome CDS911375 777 + 0.478764
YPO0846 LacI-family regulatory proteinchromosome CDS927126 1083 - 0.481071
YPO0864 conserved hypothetical proteinchromosome CDS952033 681 + 0.511013
YPO0878 putative regulatory proteinchromosome CDS964013 201 + 0.41791
YPO0881 conserved hypothetical proteinchromosome CDS967689 399 - 0.45614
YPO0883 putative DNA binding proteinchromosome CDS968547 363 - 0.440771
YPO0936 conserved hypothetical proteinchromosome CDS1028271 564 + 0.464539
YPO1064 conserved hypothetical proteinchromosome CDS1208118 261 - 0.494253
YPO1088 putative DNA-binding prophage proteinchromosome CDS1235071 321 + 0.461059
YPO1169 putative LysR-family regulatory proteinchromosome CDS1317355 894 + 0.432886
YPO1233 putative prophage repressor proteinchromosome CDS1392937 723 - 0.477178
YPO1237 putative transcriptional regulatory proteinchromosome CDS1396615 816 + 0.482843
YPO1253 putative LacI-family regulatory proteinchromosome CDS1410480 741 + 0.376518
YPO1265 putative DEAD box helicase family proteinchromosome CDS1421232 1758 - 0.525597
YPO1279 putative transcriptional regulatory proteinchromosome CDS1438210 801 + 0.493134
YPO1308 putative LysR-family transcriptional regulatory proteinchromosome CDS1469609 873 + 0.507446
YPO1437 conserved hypothetical proteinchromosome CDS1629346 636 + 0.440252
YPO1503 putative LysR-family transcriptional regulatory proteinchromosome CDS1706334 870 - 0.53908
YPO1576 putative GerR-family transcriptional regulatory proteinchromosome CDS1798092 630 - 0.487302
YPO1629 conserved hypothetical proteinchromosome CDS1853654 771 + 0.505837
YPO1630 putative Sir2 family proteinchromosome CDS1854618 837 + 0.481481
YPO1642 sucrose operon repressor LacI-familychromosome CDS1867622 1044 - 0.491379
YPO1646 conserved hypothetical proteinchromosome CDS1872838 384 + 0.494792
YPO1651 AsnC-family transcriptional regulatory proteinchromosome CDS1876877 450 - 0.44
YPO1655 cold shock proteinchromosome CDS1883773 213 + 0.460094
YPO1737 AraC-family transcriptional regulatory proteinchromosome CDS1982535 387 - 0.416021
YPO1746 cold shock proteinchromosome CDS1989489 210 + 0.442857
YPO1810 putative transcriptional regulatory proteinchromosome CDS2055306 978 - 0.505112
YPO1837 putative AraC-family transcriptional regulatory proteinchromosome CDS2083006 876 - 0.43379
YPO1849 conserved hypothetical proteinchromosome CDS2093493 339 - 0.451327
YPO1890 GntR-family putative transcriptional regulatory proteinchromosome CDS2127967 798 + 0.546366
YPO1891 hypothetical proteinchromosome CDS2128734 291 - 0.525773
YPO1904 putative transcriptional regulatorchromosome CDS2138715 282 - 0.43617
YPO1925 putative two-component response regulatorchromosome CDS2182012 633 - 0.401264
YPO1929 probable LysR-family transcriptional regulatorchromosome CDS2186344 879 + 0.511945
YPO1934 putative LysR-family transcriptional regulatory proteinchromosome CDS2190851 963 + 0.505711
YPO1936 putative aminotransferasechromosome CDS2193069 1161 + 0.472868
YPO1938 probable deoR-family transcriptional regulatory proteinchromosome CDS2196676 771 - 0.500648
YPO1960 putative GntR-family regulatory proteinchromosome CDS2226336 1422 + 0.514065
YPO2036 putative transcriptional regulatory proteinchromosome CDS2305965 1113 + 0.553459
YPO2071 putative DEAD box family helicasechromosome CDS2350433 1905 + 0.506562
YPO2093 putative phage proteinchromosome CDS2369364 564 + 0.429078
YPO2126 putative phage proteinchromosome CDS2394149 1095 + 0.452055
YPO2150 LysR-family transcriptional regulatory proteinchromosome CDS2419170 906 + 0.53532
YPO2169 putative LysR-family transcriptional regulatory proteinchromosome CDS2439399 861 + 0.291521
YPO2243 putative AraC-family transcriptional regulatory proteinchromosome CDS2519275 894 + 0.432886
YPO2273 phage hypothetical proteinchromosome CDS2555162 423 - 0.425532
YPO2283 putative LacI-family transcriptional regulatory proteinchromosome CDS2563325 1017 - 0.493609
YPO2320 putative DNA-binding phage-related proteinchromosome CDS2607727 324 - 0.459877
YPO2324 putative transcriptional regulatory proteinchromosome CDS2613751 957 - 0.53187
YPO2337 putative regulatory proteinchromosome CDS2630107 840 + 0.372619
YPO2378 TetR-family transcriptional regulatory proteinchromosome CDS2671204 600 + 0.503333
YPO2388 LysR-family transcriptional regulatory proteinchromosome CDS2682149 933 - 0.501608
YPO2449 putative LuxR-family regulatory proteinchromosome CDS2748512 615 + 0.377236
YPO2458 putative LysR-family transcriptional regulatorchromosome CDS2755992 981 - 0.50051
YPO2478 LacI-family transcriptional regulatory proteinchromosome CDS2780052 1041 + 0.464938
YPO2497 putativeLlysR-family transcriptional regulatory proteinchromosome CDS2805967 942 + 0.522293
YPO2498 putative LacI-family transcriptional regulatory proteinchromosome CDS2807155 1005 + 0.404975
YPO2508 conserved hypothetical proteinchromosome CDS2818442 498 + 0.522088
YPO2537 putative LacI-family transcriptional regulatory proteinchromosome CDS2847916 993 - 0.470292
YPO2568 LacI-family transcriptional regulatory proteinchromosome CDS2883523 1035 - 0.480193
YPO2576 conserved hypothetical proteinchromosome CDS2895617 855 - 0.559064
YPO2593 putative LuxR-family regulatory proteinschromosome CDS2915360 618 + 0.357605
YPO2762 putative AraC-family regulatory proteinchromosome CDS3096312 786 + 0.489822
YPO2823 putative regulatory proteinchromosome CDS3151430 183 + 0.442623
YPO2845 putative GntR-family regulatory proteinchromosome CDS3176021 1506 + 0.545153
YPO2897 conserved hypothetical proteinchromosome CDS3240230 495 - 0.523232
YPO2903 putative RNA-binding proteinchromosome CDS3245213 1362 + 0.469163
YPO2926 putative RpiR-family transcriptional regulatory proteinchromosome CDS3271775 840 + 0.492857
YPO2955 putative luxR-family regulatory proteinchromosome CDS3302403 603 - 0.351575
YPO2979 putative lysR-family transcriptional regulatory proteinchromosome CDS3326714 879 + 0.514221
YPO2998 putative two-component system response regulatorchromosome CDS3348209 684 - 0.475146
YPO3009 putative two-component response regulatorchromosome CDS3362417 708 + 0.512712
YPO3017 putative rpiR-family transcriptional regulatory proteinchromosome CDS3372309 879 - 0.49033
YPO3020 putative sugar kinasechromosome CDS3373928 873 - 0.565865
YPO3146 probable AsnC-family regulatory proteinchromosome CDS3506992 462 - 0.469697
YPO3184 conserved hypothetical proteinchromosome CDS3546509 450 - 0.48
YPO3211 conserved hypothetical proteinchromosome CDS3577020 915 - 0.502732
YPO3228 putative LysR-family transcriptional regulatory proteinchromosome CDS3592389 912 - 0.325658
YPO3259 putative rpiR-family transcriptional regulatory proteinchromosome CDS3631325 846 - 0.521277
YPO3287 two-component system response regulatorchromosome CDS3667419 717 + 0.446304
YPO3310 putative transcriptional regulatory proteinchromosome CDS3690760 945 + 0.478307
YPO3327 putative deoR-family regulatory proteinchromosome CDS3712002 810 + 0.427161
YPO3348 transcriptional regulatory proteinchromosome CDS3734812 960 + 0.501042
YPO3444 putative acetyltransferasechromosome CDS3851277 504 + 0.513889
YPO3485 putative transcriptional regulatory proteinchromosome CDS3894351 312 - 0.455128
YPO3545 lysR-family transcriptional regulatory proteinchromosome CDS3953349 894 - 0.527964
YPO3570 BolA-like proteinchromosome CDS3983677 264 - 0.44697
YPO3612 putative transcriptional regulatory proteinchromosome CDS4025613 408 - 0.448529
YPO3619 putative araC-family transcriptional regulatory proteinchromosome CDS4036958 942 + 0.461783
YPO3651 putative GntR-family transcriptional regulatory proteinchromosome CDS4071191 663 + 0.52187
YPO3682 putative lysR-family transcriptional regulatory proteinchromosome CDS4116671 867 - 0.341407
YPO3683 probable lysR-family transcriptional regulatory proteinchromosome CDS4117798 912 - 0.47807
YPO3690 putative ribonuclease inhibitorchromosome CDS4124523 282 + 0.453901
YPO3757 putative acetyltransferasechromosome CDS4213921 552 + 0.438406
YPO3809 putative acetyltransferasechromosome CDS4275781 393 + 0.486005
YPO3840 putative TetR-family regulatory proteinchromosome CDS4309249 687 + 0.491994
YPO3904 LysR-family transcriptional regulatory proteinchromosome CDS4377935 882 + 0.475057
YPO3913 TetR-family transcriptional regulatory proteinchromosome CDS4395038 648 - 0.513889
YPO3958 putative response regulator proteinchromosome CDS4455313 738 + 0.50813
YPO3978 putative regulatory proteinchromosome CDS4479562 1128 + 0.472518
YPO4028 putative regulatorchromosome CDS4543227 363 + 0.438017
YPO4034 putative AraC-family transcriptional regulatory proteinchromosome CDS4548192 1194 - 0.484087
YPO4075 putative acetyltransferasechromosome CDS4595111 456 + 0.519737
YPO4077 conserved hypothetical proteinchromosome CDS4596714 645 - 0.534884
acrR putative tetR-family transcriptional regulatory proteinchromosome CDS3490152 657 - 0.432268
araC arabinose operon regulatory proteinchromosome CDS2537797 933 + 0.484459
arcA aerobic respiration control proteinchromosome CDS481575 717 - 0.481172
argR arginine repressorchromosome CDS3926181 471 + 0.452229
arsR arsenical resistance operon repressorchromosome CDS3732530 342 + 0.48538
asnC regulatory proteinchromosome CDS804 462 - 0.415584
baeR two-component system response regulatorchromosome CDS3189777 720 + 0.529167
basR two-component system response regulatorchromosome CDS3917555 663 + 0.493213
betI TetR-family regulatory proteinchromosome CDS1314141 597 - 0.500838
celD cel operon repressorchromosome CDS3006325 843 + 0.409253
copR transcriptional activatorchromosome CDS2273770 693 - 0.520923
cpxR two component system response regulatory proteinchromosome CDS83610 699 - 0.499285
creB putative response regulatorchromosome CDS981670 702 - 0.497151
cspB cold shock proteinchromosome CDS2984316 213 + 0.403756
cspB cold shock-like proteinchromosome CDS1581996 210 + 0.457143
cspD cold shock-like proteinchromosome CDS1534391 264 - 0.469697
cspE putative cold shock proteinchromosome CDS2917054 210 + 0.428571
cspa1 major cold shock protein Cspa1chromosome CDS4065555 213 - 0.441315
cspa2 major cold shock protein Cspa2chromosome CDS4065083 213 - 0.441315
cueR putative regulatory proteinchromosome CDS3440864 420 - 0.464286
cysB cys regulon transcriptional activatorchromosome CDS2494036 975 + 0.465641
cytR transcriptional repressorchromosome CDS116150 1029 - 0.48105
dbpA ATP-dependent RNA helicasechromosome CDS2022577 1383 + 0.501085
deaD cold-shock dead-box protein Achromosome CDS3895290 1995 - 0.535338
deoR deoxyribose operon repressorchromosome CDS1488332 765 - 0.448366
dinG putative ATP-dependent helicase DinGchromosome CDS1356934 2181 + 0.492435
emrR MarR-family transcriptional regulatory proteinchromosome CDS3637431 513 + 0.460039
exuR exu regulon transcriptional regulatorchromosome CDS619701 795 - 0.441509
fadR fatty acid metabolism regulatory proteinchromosome CDS2412379 720 + 0.4625
fiS DNA-binding protein Fischromosome CDS4073149 297 - 0.464646
flgM negative regulator of flagellin synthesischromosome CDS2042999 303 - 0.475248
fliA RNA polymerase sigma factor for flagellar operonchromosome CDS2088117 723 + 0.529737
fliA putative RNA polymerase sigma factor for flagellar operonchromosome CDS803710 696 + 0.439655
fruR putative fructose repressorchromosome CDS587403 1011 + 0.531157
galR galactose operon repressorchromosome CDS874348 1023 + 0.521994
gcvA glycine cleavage system transcriptional activatorchromosome CDS1169923 918 + 0.491285
glpR glycerol-3-phosphate repressor proteinchromosome CDS128686 759 - 0.491436
gntR gluconate utilization system Gnt-I transcriptional repressorchromosome CDS4452730 996 - 0.521084
greA transcription elongation factorchromosome CDS3915367 477 - 0.42348
greB transcription elongation factorchromosome CDS148044 516 + 0.492248
hexR hex regulon repressorchromosome CDS2344763 870 - 0.471264
hpcR homoprotocatechuate degradative operon repressorchromosome CDS2006019 468 - 0.452991
hutC putative GntR-family transcriptional regulatory proteinchromosome CDS2240953 768 - 0.509115
iciA chromosome initiation inhibitorchromosome CDS1005708 909 + 0.539054
ilvY LysR-family transcriptional regulatory proteinchromosome CDS4364142 882 + 0.527211
kdgR IclR-family transcriptional regulatory proteinchromosome CDS1957592 792 + 0.441919
kdpE two-component regulatory protein response regulator KdpEchromosome CDS3012648 630 - 0.504762
lacI lactose operon repressorchromosome CDS932764 1074 - 0.48324
leuO LysR-family transcriptional regulator LeuOchromosome CDS580264 957 + 0.426332
lexA LexA repressorchromosome CDS321534 609 + 0.505747
lrp leucine-responsive regulatory proteinchromosome CDS1545754 495 + 0.442424
lysR transcriptional activator protein LysRchromosome CDS876844 942 + 0.512739
malT maltose regulon positive regulatory proteinchromosome CDS131037 2712 - 0.510693
metJ transcriptional repressor proteinchromosome CDS121552 318 - 0.493711
metR lysR-family transcriptional regulatory proteinchromosome CDS4254451 954 + 0.530398
mfd transcription-repair coupling factorchromosome CDS1846773 3447 - 0.51233
mlc putative ROK family transcriptional regulatory proteinchromosome CDS2550453 1218 + 0.468801
mtlR mannitol operon repressorchromosome CDS4585387 555 - 0.482883
nagC putative N-acetylglucosamine regulatory proteinchromosome CDS2949792 1230 - 0.501626
narP nitrate/nitrite response regulator protein NarPchromosome CDS3395130 630 + 0.453968
nhaR transcriptional activator protein NhaRchromosome CDS502057 900 + 0.457778
nusA N utilization substance protein Achromosome CDS3906825 1488 - 0.491263
nusB N utilization substance protein Bchromosome CDS3544207 417 - 0.477218
nusG transcription antitermination proteinchromosome CDS4208608 546 - 0.487179
ompR transcriptional regulatory proteinchromosome CDS148695 720 + 0.522222
oxyR oxidative stress transcriptional regulatory proteinchromosome CDS4397274 918 - 0.488017
pdhR pyruvate dehydrogenase complex repressorchromosome CDS3823160 765 - 0.511111
pecT LysR-family transcriptional regulatory proteinchromosome CDS2871021 933 - 0.468382
phnF probable gntR-family transcriptional regulatory proteinchromosome CDS3864023 726 + 0.567493
phoB phosphate regulon transcriptional regulatory proteinchromosome CDS3568572 690 - 0.482609
phoP response regulator proteinchromosome CDS1859917 672 - 0.479167
psaE putative regulatory proteinchromosome CDS1461102 645 + 0.376744
pspA phage shock protein Achromosome CDS2644249 666 - 0.48048
pspC phage shock protein Cchromosome CDS2643501 360 - 0.505556
pspF psp operon transcriptional activatorchromosome CDS2645159 1029 + 0.51312
ptxR putative LysR-family transcriptional regulatory proteinchromosome CDS3139529 894 - 0.495526
purR purine nucleotide synthesis repressorchromosome CDS2681035 1026 + 0.500975
rcsB probable two component response regulator component Bchromosome CDS1376533 654 - 0.396024
recG ATP-dependent DNA helicasechromosome CDS47525 2082 - 0.51633
relA GTP pyrophosphokinasechromosome CDS3768708 2235 - 0.509172
rfaH putative regulatory proteinchromosome CDS4234847 489 + 0.441718
rffC putative lipopolysaccharide biosynthesis proteinchromosome CDS4333409 669 - 0.511211
rhaR L-rhamnose operon transcriptional activatorchromosome CDS342004 873 + 0.490263
rhaS L-rhamnose operon regulatory proteinchromosome CDS341050 822 + 0.475669
rhlB putative DEAD-box helicasechromosome CDS4343947 1287 + 0.486402
rho transcription termination factorchromosome CDS4341763 1260 - 0.45873
rnb exoribonuclease IIchromosome CDS2510605 1935 - 0.502842
rnc ribonuclease IIIchromosome CDS3046571 681 + 0.497797
rnk regulator of nucleoside diphosphate kinasechromosome CDS4128696 411 - 0.501217
rnr ribonuclease Rchromosome CDS394947 2535 + 0.523077
rpoA DNA-directed RNA polymerase alpha chainchromosome CDS233915 990 + 0.508081
rpoB DNA-directed RNA polymerase beta chainchromosome CDS4201613 4029 - 0.493671
rpoC DNA-directed RNA polymerase beta' chainchromosome CDS4197264 4221 - 0.51149
rpoD RNA polymerase sigma factor RpoDchromosome CDS699212 1839 - 0.485046
rpoE RNA polymerase sigma E factorchromosome CDS3039372 576 + 0.451389
rpoH RNA polymerase sigma-32 factorchromosome CDS4277091 858 - 0.503497
rpoN RNA polymerase sigma-54 factorchromosome CDS3992463 1434 + 0.488842
rpoS RNA polymerase sigma factor RpoSchromosome CDS3744225 999 - 0.474474
rpoZ DNA-directed RNA polymerase, omega chainchromosome CDS52433 276 - 0.514493
rsd regulator of sigma Dchromosome CDS4189717 510 + 0.44902
rstA two-component regulatory system, response regulator proteinchromosome CDS2595451 747 + 0.480589
rzpR putative prophage endopeptidasechromosome CDS2371803 459 + 0.507625
sfsB putative DNA-binding proteinchromosome CDS3120316 246 - 0.495935
slyA MarR-family transcriptional regulatory proteinchromosome CDS2666674 432 - 0.402778
spoT guanosine-3',5'-bisbis(diphosphate)3'-pyrophosph ydrolasechromosome CDS50305 2109 - 0.489331
srmB ATP-dependent RNA helicasechromosome CDS3034941 1326 - 0.505279
treR trehalose operon repressorchromosome CDS4133047 954 - 0.510482
trpR putative Trp operon repressorchromosome CDS478188 378 + 0.513228
ttk TetR-family regulatory proteinchromosome CDS59184 597 - 0.479062
tyrR transcriptional regulatory proteinchromosome CDS2637850 1578 - 0.485425
uhpA two-component system response regulatorchromosome CDS4522790 591 - 0.507614
ureG urease accessory proteinchromosome CDS2995839 663 + 0.484163
uvrY response regulator proteinchromosome CDS2111798 657 + 0.455099
ybtA transcriptional regulator YbtAchromosome CDS2162347 960 - 0.563542
ypeR quorum-sensing transcriptional activator YpeRchromosome CDS2754768 738 - 0.333333
yspR quorum-sensing transcriptional regulatorchromosome CDS1091994 744 - 0.385753