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# Dehalococcoides sp. CBDB1, CBDB1

>cbdbA948 conserved hypothetical protein
MNQRKLTFKFVPMRTCIACRTEKAKADLVRLVRTEDNDVRVDHSGRLEGR
GAYLCRDMACWESGLKGSYITHALKIAITPENREELLKYGREVCEVKENG
REDK
>cbdbA1085 transcriptional regulator, MarR family
MAEQQFQNEADTGRDELLQQLLERMFSLMRHVQRDVSVIKPSLSHPQARL
VFIINKYDDSGISVKELARLTSVTPGAITQLIDALIDKKLITRETDTADR
RSIKLKLTSAARKEIHQFRKDFFSSIAEKFNVLSTDELKELVSLITKVSP
EPVTKEDMP
>cbdbA1483 hypothetical protein
MKVIEIPISKLCEAPWNPNQMDEGVKHLLKNSLSRYGLVEPLVVRPSGED
GFEVLSGNQRLKVLSEMNKESAPCVIVELGDMEAMLLTQAINGIKGQDDL
ALKGILLKELLSAMPESEILSLLPETSNSLQTLAAINKESLADHLKAWEQ
AQTAKLSHLQLQFTRPQLETVQEAVSLIMPVAKNSPKDNPNTRSTAIFLL
CKFYIERRQPE
>cbdbA1298 RNA polymerase sigma-70 factor, ECF subfamily
MQTERHLVELAQQKDEQAFARLYEEYFDKIYRYIALKIGNKMEAEDLTQQ
VFMNALRSMSSFKWQDNTPFSAWLYRIAHNQIVDYLRKKSRQPTVDIEIV
APLACADDPVETTEVNIDYEKFVKVSAKLTPAQQEVISLRFSSDLPIAEV
AKIMNRTPGAVKALQHSAVSSLRRMLSGA
>cbdbA857 putative DNA-binding protein
MMSIGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQSITLATAN
KLSNAFGIEPAKLISENDNSSPRQIEDILAEVRSIFKRLETVEVCVHGCM
PERKTYNELAYKSFLIPRSIVENLKNIYALQVEDNHLEHFGIYPGEMVVI
QAEHTIEDGNLYACQIDQGVYGYNLYSTENGFRISNGNGTSHDLPLSEIK
VLGRILLSYKCKVF
>cbdbA189 ATP-dependent RNA helicase, DEAD
MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTG
KTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIR
ECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDVCGVETLII
DEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTLETQTNP
VTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETKSVLIFARTKY
GAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDM
VRDIQRLLSSPIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYN
RPEMAVNETSQTDTPSEMPVSPARPFNPGFRPSRPANSAPRFHREGNFAP
RMQSHSSFEGTSAPAARPAARYNDRPAFRKENSFQTTEASRPSFRKETGF
TPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNKVGKPPFFRRS
KPAVSEKNETY
>cbdbA647 DNA-binding response regulator, LuxR family
MQTTQMIKVLLADDHVIVREGTRELIQRESGMMVVGEASDGVEAVEMSMK
VHPDVVVMDIAMPRLNGIEATKQIKQLLPTTAILILTAYESEQYILAILE
AGAAGFLLKNVKGTQLLEAIRSVYAGESVLQPSTTRRVIDQLINKAAKTE
ELSAVNPLTEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKL
SVGSRTEAILYGLKRGWFIMEDLP
>cbdbA1665 hypothetical protein
MMDGFEKRKTQSKEAIFRVALELFEQHGFSRVCIPEIARQRVFRR
>cbdbA1264 acetyltransferase, GNAT family
MNLTLSLAASLEELQAHRRVDYVAARVRLHPDADSCVREFKGAFLIYDGA
ESPVNRVMCLGLKEALLEEDLPGIEEFYAVHGLKAMLDVCPLVEENMVYM
LGKRGYTVYQFDSVLVHEVSSFQLEIKEPPGIVIWPVNKNNYLTWLEVVS
HGFSSAESDLMSMQSICEPNYHSRNSSAYLAYLDGKPAGGGVLYVRGHMA
ELGGDATLPDFRRRGVQTALIQHRMKIARKMGVRQMIFVSAPGNSSERNA
RRAGFEMAYSRTLLLQP
>cbdbA1373 putative transcriptional regulator, MerR family
MENTNQPRYVISVAAEILGMQTYTLRYYERVGIIKPFRSQGRIRLYSEQD
IERLKLAKTLLDELGINMAGVEVILNMRNRIQELMSENEALKEEIQLLRE
E
>cbdbA1075 DNA-binding response regulator, LuxR family
MDKIIMKPNKSSPKIGHCTSPVRIFLADDHQVAREGLRKVLCSEADIEIV
GEADNASDVLRLVEELKPQVVLTDIKISGLDSCELSHKLKGVYPPVKVVF
LTGYEAEPYVTEALYNGINGFLTKDCPLELLSNAIRVVACGGSVWQGDLL
ESASKNFVKFVNAKAEGRSPAGEYSSATINVIPQDVLSPRELEILIMVAR
GYTNKEISVNLDYAEITIKKYVKGIMTKLNVSNRTLAGIAAAKFGLV
>cbdbA1647 transcriptional regulator, MerR family
MRISEVAKAAGVSLPTIHYYTREGLLFPSLKTAHNMAYYSPDCVEDIRLI
KEFQSKRFLPLSVIKLILQAKRDGQDVKHVSEMESVLGDIFQPMPDETQS
ESISLAELISVSGLSETDVNELIAMGVIIASETENGPVFDGIETRIAQIA
KRLLTFGLKPADFEIYQQYMEIVRSEFKTIHEIIHHLPNHEVIPLRELFK
LASDFKGCLATRIYRQEARHLQEHS
>cbdbA151 DNA-binding response regulator
MSKIKILIADDEEHIRQLVCSILDKGYQIVQARNGEEAVKESREQNFDLI
LMDIMMPKLDGLAACCMLKGDKQTSSTPIIMLTGVGYELNKKLSQQLGAD
GYITKPFNPQELRNKVSEFIKHD
>cbdbA1223 transcriptional regulator, MerR family
MEKLHTVGELSKMAGVSIRTLHFYDVNGLLKPRSYTAAGYRLYGREEALR
LQQVLFYRELGFSLEGIKLLVDEPGTSLLENLRRQSGLLQDKGKQLEDLQ
KTIQKTISSLEGKIEMEINEYYQGLSQEKIDYYRSEARRRYGEETVRRSE
EMVVKMGKTKMAELQAQGQTIFEKMTKNIPNGPAHRESQELINKWRIWLE
NFAHYTDEGLLGLAIGYRDDPEFKAFFDKIHPELAAFIADAAGVYFKKST
>cbdbA610 response regulator
MITKSETVLTVDDEDTIRRLLYQKITSEGYKCLTASNATEAMEIVKNHDI
ALAILDIKMPGLSGMDILPEIRIVSPDTAVIMATAISDTDTAINCMKLGA
YDYVTKPFKLDAVIMGMERALEKRRLILENRDYQEHLELKIKDQAEKIRG
SFFNAITSLAYALEAKDSYTIGHSQRVAETSVAIAGAMELPFATVEQIRL
AGLVHDIGKIGIRSACLNKAGNLTEDEYNHIKTHPSVGERILSPITEDHE
ILKIVRHHHEHFNGRGYPDGLKGEEIPLGARIMALADAYDAMTSLRPYRK
AMTDIEAWEELKTVLRYTI
>cbdbA386 DNA-binding response regulator, LuxR family
MAKTKVLIADDHAVLREGMSRLLSQEKDIEVIGEAGDGQEAVDMVAQLKP
DVVLMDIVMPRLTGVEATKLIKKNNPSTCILILTAYSDIRYILGLLEAGA
SGYLLKSAKSDEIVGAIRAIKAGESVLDSVATRKLLERVVNVSKESDEDK
VRGQLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCS
CRTEAIVKGFREGYVMLEDVPQGIDGYDRNTL
>cbdbA1168 transcriptional regulator, ArsR family
MDNMVFKALSDPNRRQILKLLSDAPLSAGEISREFDLALSTLSGHFKLLK
EAGLIREEKKGNHIFYNLNTSVMEEALNLMMEIFKKDKPQLHTIKQKGQ
>cbdbA276 putative DNA-binding protein
MSKATSSNGWADLGEIIRQQRVKIPLTLQELAAKTSVSPSHLGRIERGER
FPSARILKRIAHPLGFEEDELFTLAGYLTPQKDSISEMEAEYTSIPRQLD
PYVAKVLAQEPIELQRAVIAILAMLKSISKSMT
>cbdbA1710 transcriptional regulator, AbrB family
MNPQQMEIFYGSGSVGAKGQIVIPVKFRKIFNIHPGDQVIFMGNPQQNAF
AVMRADQLSAMQTQLDQAKAQIERANAELANEMKKETKTK
>cbdbA1041 DNA-binding response regulator, LuxR family
MISIVLADDHHIVRHGLKALLEAEADFNVVGEASDGIEAVNLAQNLQPNV
LVTDLMMGGMSGIEVTYQVVKRSPKTAVVILSMYGNEAYVHEALRAGAWA
YVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPY
ETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQ
TQLLRYALQRGIIPPENKYEMSEKNMPEETTG
>cbdbA595 histone acetyltransferase, ELP3 family
MKKLSRTISGVTPVAVMTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRA
KSCEYQAYKQVALRLRIIQDMGHPTDKVELIIMGGTFLSADITYQYGFIK
DCYDALNGVVAGSLEEAKTINETAQHRCVGLCIETRPDICGKAEIQRMID
FGTTRVELGVQMLDDDIYKLVERGHRVSDVAEATCLLREYGLKVHYHWMP
GLPGSSPEKDLALSRMVFEDPRFCPDGLKLYPTMVVEGTILEQWWKEGRY
TPYPNGTMTGLIADIKALVPPYVRISRVLRDIPAVFISAGLKDSLRDGVR
QILESRHQKCRCIRCREYGHRQRKGQTSGEPTLRRLDYPASGGKEIFLSF
EDASDTLYGLLRLRIPCASLPVLGQKYGAKTGLVRELHVYGTELSLGEQG
DQSAQHRGLGRKLLAEAECLARDEFGLDSLAILSGVGAREYYRSLGYELV
AGYMCKHLD
>cbdbA1291 transcriptional regulator, AsnC family
MLSDILKILENDSRITPDRLACMTGLPEGEISREIKQAEADKTILKYKTV
INWEKLGAEQVFALIEVKVSPQRDVGFDAIAERIYRYPEVRSCYLLSGTY
DLLVMVGGKTMQLVANFVAQKLAPIEGVQGAVTHFLLKRYKEDGEIIDGN
DDIKREPVVL
>cbdbA1288 DNA-binding protein
MQNKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAS
LFETPIEEIFVYNTEQEGQ
>cbdbB6 hypothetical protein, containing a helix-turn-helix motif
MRSEEKTNVGVYLRSLRDTKGLSLREVERKSGVSNAVLSQIESGQVKRPS
PTTLYKLAELYGVPYDELMSRAGYPVPSRHVNETQTAQVVFNRLGKITED
EEQELLDYLAFLRSRTKRGRVQK
>cbdbA63 transcriptional repressor, ROK family
MNRSNSEVMSKPCLCLDIGGSKIRSAVVTHDGRVVAWEQEPTCARNGVTG
VFESICRVLDRLLARNNLNTSQFEALAAAVAGGIDMPNGLVTQSPHLPDW
RDVPLRDMLTERYLKTFIINDASAAALGEHRLGVGLGVKNLVYLTVSTGI
GGGIIINNELYLGQSGCAGEIGHMCLDINGKEDVCGNKGCLETLASGTAI
VSRVQTELAGGEFSILVERFKADYSALTAEDIGRAASEGDRLCLGIIRQA
GEYLGIGLVNIANIFNPELIILGGGVSKLGEIFIEPARQVLYKRAFRLAG
DDVRLIVSVLGDNAGVIGAALYAYACLDSANNQPQ
>cbdbA1532 putative transcriptional regulator
MYLSKPNPELYNQQKCEANMSLVNEDGKQNCSARLLKVEHLLYQNPNGIQ
VKDIARLCQVSKRTSYRDLNELETTLKIPLITDKNGYHIADNYFLPPIHF
TLTEGLSVFLATRLLFGYSCTYNPDIESTFTKLNSVMPAPFQHQISQTLD
KMHDKAADKENIQTMALLCRAWAEQRKVQISYWTLGKKDCSTREVSPYFI
EPAAAGHSAYLIGHCGKSNEMRTFKLERIQSIKILDDKYAIPRDFDIDKY
HSPYWGILVDGEVKDIKLSFTPEVGRIMTETIFHPSQVNETLPDQSVLVS
FRLADTPDFVSWVLSWGERVEVLEPRELRVKVIETAREMLERYAVQEKK
>cbdbA936 puromycin N-acetyltransferase, homolog
MIQSDNGLYRLEKTDIKHLARVAAEAFRDDPLTVYLLQGDTQKAKRLPIV
FEYYAALGIKYGQAYASSPDMEAVSIWFDTPVRISLWQLISCGFPLKNLW
CGFNYFQRDMQLNNLCDKMRDQLYPFSNKYLALLAVAPKYRMQGFASKVI
RPILAELDRSNVTSYLETQNLQNVNMYRRWGYEEIGQFNLPLSNISLHAM
LRKIRKDYHGGNSSSISLQAE
>cbdbA1330 conserved hypothetical protein
MRLDRRRSSIEIIADMLRLGEAGKTEIMYSVNMSYFQLQKYLNFMLEREL
IDRVQLGNPSVTYRVTAKGLELLRSIDNILDTLDLKDNEQDEA
>cbdbA784 conserved hypothetical protein
MVDREFFLGFIRIHILYHAQNEPIFGAEIARELGRHCYTITAGTLYPLLH
RLQAEGYLESFPRVEQGKQRKYYRTTLKGSEMLNECRKQIRELVDEVLG
>cbdbA1470 conserved hypothetical protein
MVEILRNKSFATRFQILIEIATHGPTIQQRAIAQELSITPQAVSDYISQL
EGESMITYLGRSRYQITREGVNWVLKNVREVKAYFDGIDSVINGIVISPA
IAEKDIKQGEQVGLKMVNGLLYATADCQTKSTGIAEADAKAGEDVGVRDI
QGLIEFSYGLVAVLVVPGIAKGGSRHIDLELLKTRLKGVSHVGAIGLESV
AALHRAGIEPDYLYDVSGVVIDAALHGLSSAVVCTEEDVYALVSSLKDRN
IEYSLISL
>cbdbA952 acetyltransferase, GNAT family
MHDNTARHLVIHNEERALACCRIRMPDEALAKIERVAVDIDYRKSGLGRE
IMNYAASLLKTENVDGVVFHAQTGAAGFYASLGYVPNGETFIEDGIQHTR
MHLRL
>cbdbA937 acetyltransferase, GNAT family
MEEIPLQYLYKLNKSDIPKAAGVCARAFHDDPVMKEISKEEARIDALYQI
FEYILKTGMDSGQAYASSANLEGIALWEPNNVRKTFNQRLRHLFYLFQVR
NQLPLLTEMSRVDKISQTLRNKHAPAIYFHLALLAVDPEYQGNGIAGHLV
RPMLDFMNETGIPCYLETQSSQNVSMYEHLGFKLLASQVITGTSQTIYGM
LKNPDRKVS
>cbdbA1301 DNA-binding response regulator, LuxR family
MEDNSKIRVMVIDEQPFFRAGVAQALSDNNFEILATDTHKDPLEQVETKM
PDVVLLGSDLTAYSGLDLGRRIVRTFPNTKVIILSPNPNDTELFECIRTA
AVACLKKSSTAEELIETIRRANRGEYPINESLMGSPSLAKQVLAQFQDVS
MLGKDASSFVAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSA
ILRKLNANDRAHAVVVAIRCGLINI
>cbdbA1383 conserved hypothetical protein
MEEKCCCGIDAILSIDARGQLVLPKEIRTKLDIQPGDKLAAITQHSGGKP
CCLLLIKADEFSELAKEIVSPILKNMTVAGGD
>cbdbA1198 conserved hypothetical protein
MSAKAFVLIEAAPAQAKKIAASLRKVSGIHSIDAVTGPYDIIAVVEQDTL
AEMGEFITSKIQAVEGITRTVTCLAL
>cbdbA1361 heat-inducible transcription repressor HrcA
MLTSRAEIILRSIVRQYITKAVPVSSSSILEDCGLDICSATIRNEVVRLE
IEGYILRPHHSAGSIPADKGYRYYVESLKDVELPTNDKFLIRHLFHQVEK
EMEEWLNLTVAVLSQRVQSMAVVTMPRQTQGKVHHIELVSLQDNLVLVVL
ILRGAKVKQQLVNFENVVSQPELTLISNRLNDAYDGLTRFQIEQKPLGLN
HDELKVKDSLVKMMRGEDEQESREPFFDGLHYMLEQPEFHQNQRAQEIMQ
LLEQKKLSKMIVPPMPFNRGVQVYIGQENASAEIRDYSLIVSQYGIPDEA
VGTIGVIGPTRMAYERALSAVSYLSLVMSTLVAELYGKAPVDKDE
>cbdbA1412 excisionase family DNA binding protein
MTKEGMTIAQAADLLGVSTRTIRRYIKSGKIQAELVPGSFGEEYRIYEIP
SDLKKEDEEDLSLQTIQTPIQFMDVVRELHEKNLALAAQLGAATEKIKQM
ESQLKLLNAPGENTPDSTPKQGWFERLWQKLGWTEKS
>cbdbA1466 transcriptional regulator, MarR family
MFDNLNHRLYHHFSCTYLSILRYMQKRMAHDTEYTLEQMSILNMLRNLGK
ADVDTMARLIIKEPNTLLQIMNRMVEKGYLEKQKIGRKTVYQITEEHRAK
HNPELFNDYTQDIFDCFTQEEKDKYLELSDKLFNSVNTKLNNYFVEYE
>cbdbA1277 acetyltransferase, GNAT family
MEKSLCIRRVTSEDMNTLADFNTAMALETENRLLDKDITLKGAAALLENP
AYGFYLMAEYNGEVAGSLMVTYEWSDWRNKLYWWVQSVYIKPEFRRKGIF
RAMYESLTEQAKEAGNVCGLRLYVEKENKRAQTTYAELGMTPSHYLMYET
DL
>cbdbA1032 DNA-binding response regulator
MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLI
ILDLMLPEISGWDVCREIRKESHVPIIMLTARDELTDKLIGLEIGADDYM
TKPFESKELVARVKVQLRRSEYPPSPDSALVIDQLEIDQERRLVKIDGKT
VDLTATEFDILISLAVSPGRVFSRMQILDKLGEAYEGYERTIDSHIKNLR
KKIEPNLESPTYILTVHGVGYKMKDRG
>cbdbA137 transcriptional regulator, TetR family
MERGNIHLAKAKQNNISRDKILSAATHLFLNSHDAGKVSIEDIAVKAKVS
PTTIYNNFGGRKALVHGVVEKIIDNSLIQSKDIMARPLPFPAKIQLILSN
KNDMAGKMPEEILKKLVNMDDDVTALIQEIYQQEIQPMWQKLIADGKAEG
YVDPSLSEEAVFIYLKVVRDGFNANAALFEPAKEKINLMMELSRIMMYGF
FKKDACLIPDIKSGHAKTG
>cbdbA488 conserved hypothetical protein
MPNIKYTLEDLRVNPGLKLPPFNLVIERGLVDRFCRATGDDGANWQNEAP
PVLALTLGFGQMLEVISADDITVLHGSSELESLKPLEVGQEVTVETSLLS
LRERPGKMGLSSFLNFEMQVTNKQGELLARVCQLAIVYSA
>cbdbA1533 conserved hypothetical protein
MSTLRNKDIIGTTLFGKARRGILSLLYGHADEEYYLRQISRTTGIGVGPV
QRELKQLTDSGIIRRRVHNQQVYYQANPMNPVFKELKSLITKTFGITDIL
HSALLPSASLIKVAFIFGSIASGNEDKTSDIDIMVIGDISFEDTVALLSD
AEKQLNREINSVVYQTSEFRQKIGKDNYFINNVLEGEKIFIIGDVHGLEE
LTK
>cbdbA381 transcriptional regulator
MNKQAATEKLVAVDIGNTSVNIGIFEGEQLLANWHLGSVAQRMADEYASL
LLGLLQHADIQAGELNRVIMCSVVPPLTTTFEEVFKTYFKATPLVVGAGI
KSGVKIRMDNPREVGADRIVNAAAARVLYPGACIIVDMGTATTFDTLSES
GEYIGGAIAPGIATSAQAIVEKTSKLPKIEIIHPAKAIGSNTVSAMQSGV
YFGYIGLVEELVRRIQAELGQKARVVATGGYASLIAEGSRIFDIVRPDLT
LQGLRFIYQMNKV
>cbdbA286 conserved hypothetical protein
MNCPYCSHPDSKVIDSRDVDDGVRRRRECVVCGQRFTTYERFQPAGLFVV
KKDQRREEFNKEKLLSGLRRACEKRPLPAGAVDKVAGDIEAELYNMGKAE
IPSTLLGDMVMERLKMLDNIAYVRFASVYREFTDITQLKKVVDNLVNGQD
EGIYKGQLSLLPEDKAVPKTRYQRR
>cbdbA158 DNA-binding response regulator
MPEHKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPAL
VILDVMIPGIDGFELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDY
LSKPFGMKELLARMKALLRRSQMQNSPAEPAGGLKIGDLEIFIERHLVIR
NGVALDFSPKEFDLFSFLVQNRYRVFSREQLLEKVWGYDYPGGTRTVDVH
ISWLRQKIEADPSKPRHLITVRGTGYKFEE
>cbdbA1083 putative transcriptional regulator, PadR-like family
MFGSPFHNFERHSHPFDRFSHSFEKRSRMFKRGDMKFVILDLLKDKPAHG
YEVTQSLEERFHGLYSPSTGSVYPVLQLLEDMEYVTSSEVEGKKIYTITD
GGKKFLHEQEATTQKIKERLWGWGNAKNQEYLQNIRTTMNYLDEIRELMG
HIAVHNDPAKIIRVNNILDKTLEEMEIVYREK
>cbdbA1165 TfoX domain protein
MRATKEFLQLVMDKLSALPEIDSRAMFGGYGIYSEGLMFGLLADENSLYF
KAGDTNLADYASYGSHQFKPMPYYEVPADVFEDDGLFIKWAERSVMQAKL
MAAKKASKKYK
>cbdbA1404 transcriptional regulator, TetR family
MPETIKADNRKMQAEKRRREILDAALKIFAEQGYQGATISQISETAGTSL
GLLYHYFPNKKALMEAVIAENSFLPMLKNILGKPGNQNIQTVLTKLCLEF
YRLLENKKELVSVFLREGTSNPTVRQVWFGMLAQGALSFKIFLDQYVERG
VLKAHSTDISARSLMSATVMLYLTNEAFGEGFAKPAEFITQMVANQLSGI
EIRQKE
>cbdbA1611 transcriptional regulator, MerR family
MDNEVAYQISEIAKQSGVSLRTVRFYQQKGLIVPSLRTSSGMSLYSQKDV
NRVKLIRRLKDTGMSLNRILDILDAGGETDRKAKAEHTLKVLKLEAENAA
SRIAELERQSCERKEIISLVSKCLGCDMEVCPEMCPPRNHLIY
>cbdbA108 putative helicase (Snf2 family)
MGGTFSIDNSSGNTEFQVGQIVRLKSNPTVRGPVIAVTSRKKENLYTVFV
NGETKMLYASQLQLEEGEKPEFQYLPLSRFHSYMTALQICHPSLSNLYSL
NSARIDFIPYQFRPVFKFIRSDRPRLLIADGVGVGKTIEAGLILQELQAR
RDIQSVLIICPRPLVMERKWQIEMRRFGEHFTHLEGSTLRYCINEMDLEG
IWPEQYKKSIISYSLFDEMLLFGPNGGNNRKRRKSLLTLDPPPRFDLVIV
DEAHHIRNTETYAHKAVRYFCDNAEAVLFLTATPIQLGSNDLFVLLNVLR
PDLIIDQKSFEHMAEPNPFINRAVAVTRSQQNEWEHEALVAIEEAASTAW
GQSILKNSPDFQRIRSRLLEGGIAPEERIALISDLEGLHTFSRIISRTRR
RDIGEFTVRKPQTVSVEFTPTQKALHDSLLEIQTEIFSRLHDDANVKFMM
TTLRRQAGSCIYGLAPFIEDILTRHIGELPLDESGEGEEVPDKDIVDKIK
PLIKTLIEKANSLETFDPKLEALKKVIRDKLTLPNNKIMLFSSFRHTLAY
IYKNLIAEGYRVGLVHGGTPDEERENIRDRFQLTGQDEKVIDVLLFSEIG
CEGLDYQFCDCMINYDLPWNPMRIEQRIGRIDRNGQKSETVAIFNMVTPG
TIDAEIYERCLLRIGVFKNSIGDNEEILGEISREIRAIAENFKLSESERQ
LKLQQLADNQIRLFQEQQKLEEKQVELFGIKLPAEQFKKEVDEASSYWLL
PSSIQGLVENYLQTLYEKDQEYKLGDKPIKTLRVSQDVRNRLLQDFQNLP
RQTSSLYREWESWLKGNTPNLPITFNANTVSGQPDAVFITPIHPLVRQAA
GAFDIHVRALTCLRAKSEVVPAGIYHFVIYQWQFHGIRDDMVLCPVTELD
VLNKELIHLLATAEEPSNGNSYEAPDTQLMEDLDNRHYNLWFEACEKHKK
RTRELAQHRRESLTTSHHARISLLNEYLEAASDEKIQRMRRSQIATAEND
YTRHVKELDTAIERADITTQPVAFGILIIEKGE
>cbdbA523 DNA-binding protein
MILRTRIKELRARYNLTQSELAETVGVSRQTMLYLEKGKYNPSLILAHKV
AKALHADIEDVFILRDV
>cbdbB7 conserved hypothetical protein
MKNQADIPRLVQELRERMGLTQEKFAAKLGVTYPTINRWENGRAKPSPLA
MKQIEKLTKGLGERGRDILDEFFGDEK
>cbdbA1685 putative transcriptional regulator
MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLR
IAGLVRSVRGANGGFVLARDPKEIKLSDIVKATEGSTSPSECVDDPRVCW
RGEGCITRNVWLRIKKATDEILDSINLDNLVQQWKESGSPEVPLELSI
>cbdbA966 transcriptional regulator, ArsR family
MENYVNIFKSLADEYRLRILSLLFKQECCVCEIQQALGISQTSASRHLQN
LHQAGLIKLRRDGLWALYSVDYGEFPSDIRKLMQYTKEMLAQNPQALQDF
SRLKASCRRGNV
>cbdbA1053 response regulator
MLKLFIVTADAKKNGNLLKELEADRFEIKQAVSCVLAYPSLFEFAPDIIL
LDFLSLKAEQSEWEIPEDIQLDKNPLVMGLLPADDYEDIALKPGLDDFIR
WPGSVNELKVRLARLAEKWGMGEPGIIKAGDLIIDTLGCEVTLAGQLLEL
TFREFELLKFLAQNRGRVFSREALLNKVWGYDYYGGDRTVDVHITRLRGK
IEDSTHTFVETVRNIGYRFKRRF
>cbdbA743 greA, transcription elongation factor GreA
MASRKSATRTSQNAVEKIPMTASGYKKLEDELGILKVKRIAVIEEMRLAA
LDKDMRENAPYHAAKEQRGQIEGRIKEIEHELKHAEVSEYTDNNTSKVNM
GNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRISASSPIGKALFNRSKGDN
IEIEVPSGTLQYVIEDISFK
>cbdbA1397 hypB, hydrogenase accessory protein HypB
MKVKVLKNITDMNDQLATRNKHMFADKGILVINVMSSPGAGKTSLLLKTI
ELLGNDARVGVIEGDIASSVDAEKIAATGSQAIQINTDGGCHLDANMVAT
AADGLELDKLDIIFIENVGNLVCPAGFQLGEAKRVVLASVPEGDDKPTKY
PFMFRDTDVIVITKMDYLPLSDFNMESFRKTVLGLNPDVKIIELSVRNGQ
GLDEWIAWLKSNLLQRQ
>cbdbA219 kamA, L-lysine 2,3-aminomutase homologe, probable frameshift
MAHKISSDYHEDEWNNWKWHISHTIRDLTTVEKLLGVKFSAEKRRSLEDT
ILKFPMSITPYYFSLIDRKNFENDPVFIQSVPSAAELNFSCYDKEDPLAE
DVDSPAPGITHRYPDRVLFHVSNRCAMYCRHCTRKRKVGDIDKNLSRDEL
KKGLEYIKNTPRVRDVLLSGGDPLLLPDSILEWLLSELKAIPHVQVIRIG
TRVPVVLPQRITPHLVKIIRKYHPVWINTHFNHPREITSTSSRALGMLAD
AGIPLGNQTVLLAKVNDCPRVMKALVHKLVENRVRPYYLYQCDPAQGLSH
FRTSIGKGIEIIENLIGHTSGFAVPTYVIDAPNGGGKIPIMPNYLISQSS
SKVILRNYEGIITAYYQPEDYHPPKCGQDCSACNLDLDLNGAAEGALVGI
ARLLSNYEDTDYLVPTECDRMDRRKSGYDQITTMGTSLIQHGKNSDRIYL
MRLAAEEAATLITGMQTLATENGYTKLFAKVPDDIKPLFEADGFETEAVI
PCFYGGSKAGYFMGKFIDKDRKIEENGELLEDVLKVAHSKAGKVPAVKLP
NGYTLRKCTAEDTSAMAEVFSTVFASYPFPIFEPDYISRTMAESITYYGI
WHGDRLAALSSAEQYPLEGHVELTDFATLPAYRRRKLAGILLRTMEDEMK
QKGFGVSYTSAVAESYGMNISFARQGYKFAGRLKNNTQINGSIKSMNVWY
KCLKKKTK
>cbdbA1740 lexA, LexA repressor
MIAKLTTRQRAMIDFIARFRRRYGYPPSIRDIVSGCNISSTSVVDYNLKI
LQKMGLIRRQAEISRGIELVGTEETNEGRISIPVIGQIAAGTPIPVPESD
SFAVVTSDESIEVTEDLTRGRGNIYALRVKGVSMIEDLINDGDLVIMQHT
QTVDNGETAAVWLKDQKEVTLKRVYMEPGRVRLQPANRTMPPIYTKPDNV
EIQGRVIAVIRQLD
>cbdbA1211 mfd, transcription-repair coupling factor
MNLIGLLPLIDQSPSFNSLFESLDRGEADISVLDAGRGFSLAAVYRKLKC
PMLVITSQPERARELLEQIAAYSGEEPGFLPDPSLLPYQRAVSDRNSSLE
KMRLAGILGGFIRSGDARIIVTAVPALLQRYISPKVFEQSFVQVWTGLET
EPQNLICRFQQLGYRQESIVEMPGTYSHRGGILDIFPHTEDNPVRLEFFG
NTLESLRNFDPQSQRSGKQVNELTISPASEIFHLGQLPRQELKNKLDALL
TDNLNPEFSRTLSADINHLQEGLKPEYPEFFAPLFNTSSILDYLPADALV
VLDEPASIEQAAFHLDNEAEELRSDRLSQGELPSVYPRPYFSWAEISEML
KTKKRLIMASFGRESESLKLEFASPDNYVGRLTSLYEKLPELKGHAGRVV
IVSHQAARLTELLAEEGISTNVQTDILKTPPSASLSLVQGILGAGWSLSG
SLHVFTDAELFGFVKQRRLPSKRPVARKGVVLDIKPGEFVVHIDHGVALF
SGVSHMNRDGMDKEYLILQYAGGDKLYVPADQMDRVNRFIGSGDEPPSLH
RLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFSADTVWQQEM
EASFSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAF
KAVMDGKQVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQK
EVVENLEKGEVDICIGTHRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFK
KLRAQVDVLTLSATPIPRTLHMSMVGVRDMSIIETPPGERLPIKTVVAAF
DERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIGHG
QMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGY
GIAMKDLEIRGAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKATGSGL
SKEEIRLKNMPAPKLDLPLDAFIPEYYIQDLDLRLSIYQQLSALTSLAGV
QEKEKELADRFGAMPPELENLLYSIRLRLLAKKAHVDTIVTEGSQIVVRM
LGGLIINKSLLEPLRAGVIAGRNQVAIEFKKIGDKWKEVLEEVIWRLG
>cbdbA949 nusA, N utilization substance protein A
MKSDFLLAITQLSAEKNLPKEVVLATVESALVSAYRKESFAPNQNITVKI
DQLTGKVKVMAEKQVVEKVIDSRQEMRLLEAKRLKADAKIGDLMMVEDTP
ADAGRIAAQTAKQVILQRLHEAENTAIFDEYASKAGDTLVGVVQRIEPKQ
ITVDIGRVEAIMPANEQAYGERYRAGQRIKVYVVDVAKTAKGPSVIVSRS
HPGLVRRLFEMEVPEVFNQLVEIKAVAREAGSRSKVAVGALQPGIDPVGC
CVGLRGIRIQNIVSELNGEKIDVVAWSSEIASFIANSLSPAQVTKVILNE
AERSAIVVIPDRQLSLGIGKEGQNVRLAVKLTGWRIDIKSASDEDVERAE
VAARQQEEISKSKITEKVVEKQPVIAAVSKTETVPVEKVLPADTIIEPVA
KETPAKAESVPEEQGVVVPLNVLDKAAGGDSVKLRFAEDLLPRREVVIDD
KNKSKNKKKTVKGKDTAEDGIKLKGKKRRNVTEYESEEIDF
>cbdbA1206 nusB, N utilization substance protein B
MTTSRRKAREIVLQALYEQDLAGHNAEDVLKRLLTENPQTEENVEFIFRL
TNAVVKHKDLLDENIRQFASAWPVEQLSYIDRNVLRLAIFEIIHENDVPV
KVAINEAVELAKSFGGNSSARFINGVLSSVSKALADTANQREE
>cbdbA958 nusG, transcription antitermination protein NusG
MTVKQKNWYVVHTYSGHEERVRKGLEERIKSMDAEDDIERVVLPTEEEVE
VKNGQRRTIRKKILPGYVLVQMNMNDKSWTIVRNTPGVTGFVGSEGKPTN
LPPEEVSRILDQMEAESPRVKVGFRKGQSVRVIDGPFVDFIGMVDEINTE
KGKVKVLLSLFGRETPVELDFLQVEKL
>cbdbA1602 rdhD, response regulator
MDLKQDTLLIVDDEELIRQLLRVKFSGENYQCLTAVNGIEAIELIKGIQI
AVVLLDINMPGKTGIETLQDIKTLKPDTEVIMATAINDIEIALKCLRLGA
YDYVIKPFNLEELIHITKRAQEHRRLILENRSYQLELEKKVSERTEELRQ
ALDKLKTASLDTIFRLSRAAEYKDEDTGMHIRRIGRYAAQIAETMGLPAE
QIESFLYAAPMHDIGKIGIPDHILLKPGTLTPQEWEIMKQHTIIGANILE
GAASEIIKQGAVIALNHHEKWDGSGYPNGLKGENIPLAGRITAIVDVFDA
LTSKRPYRLQSFSVPEALKMIEENVGKQFDPEIYRALQGSLKNILAIKEH
H
>cbdbA90 rdhD, DNA-binding response regulato
MKIVIIEDEEEIVKILKLTFQIRWPSAEILAANYGSKGIQIVEKESPDLV
ILDLGLPDMDGFDVLDQIRAFSSEVPVLILTVTNDEHCIVRALESGADEY
IIKPFHQLELLSRVKVLLRRRLMDSEEVAINVGPFRLSKYSNTLMVDNRR
LILTNTEKIIMSHLLSNAGNLVPATLLAEAIWGHNYTNAKDAVRVHIWRL
RRKVEPNPQTPCFIITVPHLGFKLALS
>cbdbA1493 rdhD, DNA-binding response regulator
MNVPKTALIIEDNDDIVQTVSLAFQIRWPNINISSTHSGQNGIRMVEDKN
PNVIILDLGLPDIDGFKVIQEIRLFSKVPIIVLTVRDTEADIVHALELGA
DDYVLKPFRQLELTSRVNAQLRHGEIEEETIHLGNYYLNPNERILSADNK
NICLTRIETIVLETLFNRAGHVVTHTVLAEQIWGDVHPSTVKNVRIHIKR
LRNKLEYEAGLTSLIVTKPGVGYLIQV
>cbdbA100 rdhD, DNA-binding response regulator, LuxR family
MVIMMQTFANTHLPIKVFIVDDHEVVRQGLKAIFKDESDIDFAGESDGQK
SVLGEIAKAQPDIVLLDIRINGSDGFEIACQLNNKLPYVKILMISGYESE
LYLSESLNYKVKGFIPKGSSKDYVCAAIRMIALGGTVWHGELLYRAICGL
RPINETLNKKMIRDETHIKPRELKVLVLLAEGKLNKEISCELHVSIDTVK
KDIQQLKKKYGATNRIQLATIATEMHLK
>cbdbA1630 rdhD, DNA-binding response regulator
MKILIIEDDYKIVQAISFALKICWPDATLLSASRGENGLKIIEEQSPNLI
ILDLSLPDMDGLEVLKDARLFCDTPIIILTVRAEESDVVEALELGANEYI
IKPFRQMELLARIRCILRRPITTNKDALIEWGPFKLDYFKRLLFINQKTV
ILTTIESQIMHELIKDAPGIVTYSRLSELISGGHYPEVINSIKVHVYNLR
RKLEADAYAPKHIMNMHGVGYFLSK
>cbdbA1564 rdhD, DNA-binding response regulator
MSLINMKLLIIEDDPQIIDAISSVLKIVWSNIRVLSSTSGKGGIELVESQ
NPDAVLLDLGLPDIDGFDVLRQIRAFSLVPIIIITVCEDENILVKAFELD
ANDYLVKPFRQLELIARLKASMKKRRFMEEDLSVTYANIHFGRTVQEVYV
NNKRLFLTQTEGRLLYQLVSKVGKVITVTELSEVLWGDYIPGASDNIKNY
ICRLRRKMEEDPANPKIILNHHGIGYSIPV
>cbdbA1497 rdhD, DNA-binding response regulator
MNKILIIEDDLKTADAFSSIFRLTWPDAEIMVTSNGEQGIQKIEDQQPEI
VILDIGLPDISGFDVIREVRRFTDVPIIVITARTDELDVVKALELGANDF
ISKPPRKMELIARIKALIRKKTIDDFSFGNISFDKTQRTINIKDKKISLS
VYESLLFEKLILAAPNTATYAQLTECLWGEDNEENIKKLKVHIQYLRAKI
EKAANTSSIIVNRSGLGYFLRNP
>cbdbA1551 rdhD, DNA-binding response regulator
MAKECILLIDDITDTTAIVSLLKAAEYQIILAKNETDGLKKASQFHADLV
IVNQTHIKLLQHELSLLIRQLSYMPILVLGSQNEAAEILELGADSFISSP
PNPRELKARINSILRPKRKLPPHKIDGSNNESNSNTLNLKTSYKLTPTEN
RLDSCLKQNQGHLIEYQSLINAIWGEDKIRLDTLHYYMRRLKSKVSFPRI
IQQRGIGYLLDRS
>cbdbA1511 rdhD, DNA-binding response regulator
MKLLLIEDDTNLAKVITSGLEENGYVVNWESDGKLGAEMALAYTFDVIIL
DIMLPEINGFSVCKKIRTEGNQTPVIMLTARYQEDDRVRGLDCGADDYLV
KPFSFPELLARLRALLRRANNQHSPSIKLRKLTLNTVDRRVFYDDKEIEF
TAKEYGILEYLVLNKNCIITKNMIEEHIWESESDIFSNVIEVLISRIRKK
LDNNNKNSLIKTVKGLGYIIEDK
>cbdbA1567 rdhD, probable regulatory protein, LuxR domain
MNLQENNNSPAVYPVSGKPQDTGSCLKPIPLTVEGQTDEVEIALRERVKE
LNCLYGIFQLAERHHSSLNRFLFELSNFLPNAWQYPDITKAKIVFRGHSF
LSTGFQISKWNQSSPVLLNGELMGECTIYYTEERPVIYEGPFLKEERILL
NNVAVQIGNLAGRIAIDEELEEINRQLKLERQALQEANTALKVILSRGEA
ARQDIYNDINQNVDKILKPILLSLEAQLPPSQKIYTQLILSNLEGISSSF
VTSLTGVCNCLSPVEIAVSNMIKNGLTTKEIASLRGVSAATINRHRENIR
RKFKIINQSVNLSTFLQSNLNILE
>cbdbA235 rdhD, DNA-binding response regulator
MKLLFIEDDKKIVESIFLLFKSFWPDMETKAVHLGKTGIETAYKEDFDIA
IIDLGLPDIDGINVLKQIRAFSSLPILILTARNNEQEIFTAFELGADDYI
TKPFQPLELIARVKSLLKRLSRASQDLGVKYGHWKFGTSLKEISYNNIRV
NLTVTEGQLLHILLTKAGSTVSYADISKSIWGRNEYYAKETIKTHIMRIR
QKLSRIDNSKEFIINIPGVGYQIVE
>cbdbA1589 rdhD, DNA-binding response regulator
MKTLIIEDDLSIIDLVALTFSVAWPDIQIVRTQLGKEGIELAETEAPDFI
ILDLGLPDMSGVEVLQEIRSFSKVPIIVLTVKKDEMDVVVALSKGADEFI
SKPFRQMELISRVKNVLRRSHPSEGEVYAMGNLTYYPALNKIESNGRELK
LSPTENIIFLHLANQRPNYVTYRSLASVIWGDEYPGCHKAIRVLVNQLRE
KLALVLSQPDLIVTKYGLGYYLGNG
>cbdbA184 rdhD, DNA-binding response regulator
MNILIVEDNDAAASTISSILKLSYHDAKITICRTGYEALESINSDKADLV
MLDLGLPDMNGLKVLDEIRPITGAPIIVVTACEEEENVLKALEQGADEYI
IKPFRHLEFLARVKKALSKNISPNTAIIKFGDLTIDCAKHELTFRNDRVL
LTRVETMIMSLLLQRGGQIVDYRDISDTLWGHAYPGSDESIRVYVSRLRI
KMEKNLKTGGIIKNEAGIGYRLSFAE
>cbdbA83 rdhD, DNA-binding response regulator
MRKNNILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQNIPDI
IVLDVLMPVMDGMETCIQIRKQSSIPIIMLSAKGSSFDKIQCLKLGADDY
LTKPFDIDELTARVESVLRRAGNKNIPRNEDVKCLKCGDISLNLDNRQVT
VNKREIKLTPIELALFQELIQNPDKVLDHRYLLSKVWGPEYIQDKAYLHV
FISHLRKKIKQSNAKSEYILTIPGIGYMLKTPR
>cbdbA1544 rdhD, DNA-binding response regulator
MYMKILIIEDDAQTIEIVRLAFKLGWPDLHLIEADFGEYGLEMIETEKPD
VVILDIGLPDINGYEVLRRIRLFSETPVIVLTVRSDEVDIVKALSLGADD
YLVKPFRQMELLARVKAISRRLRPPEVNLEIECGPFRFGRSITQLYKKEE
IIRLTNIEGQILYHLMRSNGRCVSNEILAQKVWGEKVYERIRVNIRHLRE
KIEDDPSHPKYLLNVAGKGYMFSYQDSP
>cbdbA1548 rdhD, DNA-binding response regulator, LuxR family
MHNQDNINNEPTTKSNGQIIKVVLIDDHEIVRQGLATMLQKEPDIRLVGD
APDSVSGLDIIEKTNPDVVLLDVQLGNTDIDGFTLAKKIKNKYPDKMVIM
LTGFDSELYLTEAVRSKVDGFILKEHPRLILACAIRMAYSGISIWDTKIL
YRALTNISRSKENIETTPLVHDKFGVDLNEKEKIILHLLAKGYSNKDIGH
KLEYTPSTVKKYVYNCMKKLGVSNRTQLAILANNNGLK
>cbdbA240 rdhD, DNA-binding response regulator
MKLLLIEDDAEIIDVVCTIFQISCPNSRVLSASNGRRGIETVESANPDII
LLDLGLPDMNGFDVLKQIRTFSDTPIIILTVRGDESDVVRGLTLGANDYI
IKPFRQMELLARVRRLLTKKQINGEDLSITCGKMHFGSSIRELWINGTLV
NLTVSEGRIIYMLMKNHDKTVSYEDLSELLWGDYYPEARSNLKTHILRLR
NKIEDTASDPKLLINSPNHGYILKTID
>cbdbA1552 rdhD, DNA-binding response regulator
MKILIMCGDPQVLKDLVLCLKIRYQNLEYTVSDNITEGTGLIETLSPDLI
ILDSYLLDSTTQNIIISIREFSDIPIIILNTIGEIGSKVQFLEDGADECI
EKPINGIECQAVTNALLRRNMNLGFKAESTIPISNGLEVNFNRRELTQSG
IPVHLTPIEFSLLALLARNSGQVLTYRMLLEKVWGTEYSGDLNLLKKHIH
NLRAKIEVNPEYPKIIVTERGLGYSLIRQF
>cbdbA78 rdhD, DNA-binding response regulator
MLMKIVIIEDDLRIVEMIAMALYIRWPNIKVISTRFGEEGIEIVSNENPD
AVVLDLGLPDIDGLSVLKAIRRYSDLPVLILTVRAIESDIVQGLELGADD
YMVKPFKQLELLARLHGMIKRHQKSDDGEIISTGSIQLNTLTRILELGSK
EIILTSTECRLMRHFIFNAGKIVTIPSLAEVLWGDNYLGAANAMRVYIRR
LREKLEEDLKNPRFIITKPGIGYILIKNNIKMPNN
>cbdbA1625 rdhR, transcriptional regulator, MarR family
MNEFETLELEHLLWVNITQVKHSIERAWTRELKSLNLSTEKFAILHELMC
LGGESTPHTLARRIVFEPHSVSAIVSRMEKDGLIIKTKDLDKKHMVRIKL
SEKAIDTFYQALEISNRVYKQMMASITREEKVELSKTLTKLRNHTLPLTH
KHTKTLTPFKYI
>cbdbA1091 rdhR, transcriptional regulator, MarR family
MEFSDFYKWDPNDAAGLLLMRTRRAIYKELERAYYQIGISPEQAGVFDQI
ATKGKATINDITRRLLREPHTILGLINRMEANGLIYKEKDPDNHSMITIS
LTEKGYNTYRQMLDIRKTMVKSTAVLTDDERGQLEKLLKKILDATLKRLD
KKG
>cbdbA1596 rdhR, transcriptional regulator, MarR family
MPSNNTFEIWSMLMQARAGAYNVRRKELLETGITPEQAGILNILHVERDT
VVTPAKISKIFLREPHTVSVTLKSMEAKGLLELRKDLERRNMIRVVITEA
GENARNNAFLLNKVQKIFEDFSEEEIEQLKGLLRKVRDKSINELSTPKVK
PNYDLNILHNYDTEISLKNNS
>cbdbA1576 rdhR, transcriptional regulator, MarR family
MSNFFLFDFEDKNIELFGIIMRTRNILYKLSKRNLHRLDISPEQSTILMV
VKNSPVAPTPIQISRQLLREPHTIAVNLKRMQSRGLVTLEQDSEWKNRIR
VNLTDKGRQICEESFNPEFFQEVFQDLNEKEIDQFKGILEKLLVSGMKKL
KIKDTIDL
>cbdbA1456 rdhR, transcriptional regulator, MarR family
MYLPPKILFNKRIHIVEKTTEYREGYMTHRLRENGYAIWSTLMQARVAAY
HVRRKDLLEYGVSPEQAGILERLYHSKDKTMTPTRIAELYFRQPNTITAI
LRNMEKKGLVELTKNLERKNMIRVSITKKGMQLRETISTNLTETRKIFDV
LSDEELDQLENMLLRIRDKSIIQTSSSKFNATRRLDQIHESDGQII
>cbdbA1583 rdhR, transcriptional regulator, MarR family
MAEVPGRKQKEADQYWVSFGAGDKNIVAGLRLEQVRILVYRVITKSFQPL
GITPEQAIILVEVHNSSAPMTPTRLGKIIRRDAAAISRILSRMQKNGTIL
LMKDLEYKNLIRIELTPKGTEICEGVEKIIKSQHAVLFKVLSETEVDSFL
VMLEKINKVASDVLRHMKFKSDL
>cbdbA1616 rdhR, transcriptional regulator, MarR family
MDKAEIIKSIIEIEGQIGQTVLPYAMNSWCKLDVPLAQMKSLFIIMSKGE
TNLSALAQGLGVTPGDVTGIAERLVEQGLVIRKTGTVDRRITMLQVTDKG
RELVTDLVESKSGHMLHILEHMSLDGLESLRKGLQELILAIRAHQQELS
>cbdbA1509 rdhR, transcriptional regulator, MarR family
MDYSKFKNLQIGHYLTILLHHSSHLNHKKLEQELRKVGLSVERFIILHII
CALGGVTNPSSITRETILEPHAISALLIRMEKDGLITRTAYEKPKNTVRV
ELTEEAKKMMERAWQIMPELDEFWEDCLTNDEVKVLLKLLEKIKRYNLPA
IYGNKKNSDIPIPEYDPKTGALTGFRASI
>cbdbA1619 rdhR, transcriptional regulator, MarR family
MTRTPRLNTFEIWGIIMQARAVAYNVRRKELTEQDLTPEQAGILNILHKG
KTKIITPAKIAKEYLREPHTISVILKRMEDKGLIALTKNLARRNMIRVTL
TEKGENARTDAFRLDRTSKLFENLSDDEIKTLYSLLTKVMNNSIEALAES
ASDANRDLSIFHEYDTKLKSEDLP
>cbdbA1553 rdhR, transcriptional regulator, MarR family
MIKIHWEDNMDKSSHLTKHHLLWIMITQIEHIVGQSFSQELRKIGLTREK
WAVIHELVYLGGESTPYRLSKRFVYEPHSISALLSRMEREGFILKTKDLA
KKNMVRVSLTDKSRELYPKAIKICQELFKDIMGDIPEEDGIGLLESISRL
RDYSIVSAAKRKNLTPFKYE
>cbdbA1534 rdhR, transcriptional regulator, MarR family,probable
MFLELLVKDYDIFDSDSYNLLTALVRTERIANRYAEKSTIRSPQIPHDQQ
YICDILGIFKTSTRSDFVRFLIREPSSVAQILGRMEEKGYIRKETLPGTR
KLVFSLIEPEKLFNIGETDRVCNNIFSGLTQSEQDQLKNLLDKLFISVKD
RLETEHYSSPFS
>cbdbA855 rdhR, transcriptional regulator, MarR family
MTPENSPENAKSILVKDILVLIQKLYTEALVIPQGLLETEITMPQLRVLL
LLHLNGPLSMGIISKKLCIGLATLTGIVDRLVKQGFVERETPPDNRRVVI
CHLTEKGNAHYENLWQFTTGKVAELLDGVDNEDLSVIRNGFCILEKSAAN
KSAAIENTDRI
>cbdbA1571 rdhR, transcriptional regulator, MarR family
MSPKSTIESNWYLKVLLFQSHHLLSKLWTRELRKSKITLEKFAILHEISN
FNGNPTPHAIAKATVYEPAAVSAIIGRLEKDGFITKHKDLKQKNMVRIEI
TQQGRDVFTRASRDVVQLNQTLLSVLPNEEKDYIIHSLSIFRDHLLPLAF
DKSKKLTNYKSTSKKQVD
>cbdbA1622 rdhR, transcriptional regulator, MarR family
MIRQKVIEDIHNDMCLIKHNMFSVAHTAGDVLALGHTQLMVLRAVEKNKG
TGIKDLANLLNISPSAVTQIVDGLVEKGLLTREMDLKDRRAISLSLTAEA
SGRIVEIKKQTTLKIVAAFDALNDDELAMFALLNKKLAEKITGN
>cbdbA1194 recG, ATP-dependent DNA helicase RecG
MAFLPKLENQPIGRPAPQKAPKAKSPSKTPAKPKADTRLPALDGDVSLVK
GISAATAPKFHKLGVNTVRDLLYYFPNRHLDYSRLKKISQLEAGPEQTII
ANVWQSKVNFMGGRRSTEAVLGDDTGNMRAVWFNNPYMVRNLKPNARVVL
SGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRR
LMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFPDDEELKNAAR
NRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTD
AQTKCLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGA
FMAPTEILAEQHFKSVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLI
SDMKGSQKDILKEKIKKGEVDIAIGTHALIQKEIRFKSLGLAVIDEQHRF
GVEQRSALRSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQ
SIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQAKAATAE
YETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVG
IDIPNAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENPSLLGQ
ERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGLPKLRMASISDVGLL
EQARKEATRLFELDPELSLPENAPLEAEVRRVWPKKSEWS
>cbdbA5 relA, GTP pyrophosphokinase
MEFADLKEKASKYLPPEKLTLLEEAYNYAAAAHAGQMRKSGEPFIEHPLN
VAMTLADLQLDAATLSAALLHDVPEDANISLEQIDKKFGADVAKLVDGVT
KLSKLALGPAIEDARRPGGNASLRQAENLRKMLVAMAEDLRVVFIKLADR
FHNMRTLQALSPEKRRSIAKETMEIYAPLAHRLGIWELKWQLEDLAFRYL
DPRHYRQVANLVDSKLAQRQNYLEHVSAILQGEFEKNGLNVEVSGRPKHL
YSIYQKMEKYASQGKQFEDIYDVLALRVLVNDIPDCYHAVGIVHSLWHPI
PGAFDDYIANPKPNGYQSLHTAVMSLGTTPLEVQVRTYQMHHIAEYGVAA
HWRYKTAGKEDVNFEDRIGWLRQLIEWHRDMRGAEEFLESVKTDIFNDQV
FVFTPKGEIKDLAKGATPIDFAYRIHTELGNRCIGAKANGRLVPLDYQLK
NGEVVEIVTTKKDRGPSRDWLNVNMGYIKTHHAREKILAWFKKQERTENL
DRGRELLEKELKHIGIKTVDRDALAKTFKYENADEFLMAIGYGAVSVHQV
SMKLLSQQEQPRVVTPPTQTTKPTSQSSVSVMGTGSLLTNIAKCCNPVPG
DDIIGYVTRNRGVTVHRQDCHNILHEEERERLVSVDWGMPKEELYPASIR
IQAWDRVGLVRDVSTVVAEEKISILSMTVTENDDKTTTLAMTTQIKSLSQ
LTRLMAKLEGIRGIISINRVGADGSRSG
>cbdbA1369 rho, transcription termination factor Rho
MEIGQFELSELEKKTREELLDIAKEMGINGVTALKKQDLVMRLIQVYTES
QGNVFCSGILEIMPDGYGFLRQASLLPSSSDIYVSQSQIRRFGLRTGDMV
IGQGRPAKPGEKYYSLLRVEAINDLNPEMAKRRPNFGALVPTFPDRLINL
ETTPTELATRLINLIAPIGRGQRGLIVSPPKAGKTTILKNIANATATNYN
DIHIMVVLIGERPEEVTDMRRHVRGEVMAATFDEPVENQTRVAELALERA
KRMVESGKDVFILLDGITRLTRAYNLAMPSSGRTLSGGIDPVALHPAKKF
FGAARNTEEGGSLTIIATCLVETGSRMDDLIYEEFKGTGNMELHLERRLA
ERRVFPALDIPRSSTRREELLLGDNYKQVQLLRRMVAIIADDANHFTEVN
ERLLDRLRRSKNNAEFLANLQKEM
>cbdbA994 rnc, ribonuclease III
MLDLTELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGD
AVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYLY
LGRGEDVSKGRFKPANLAGAFEAVLAAIYIDKGMDVTREVIFRLFKTEME
RVQTLSSNIDYKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAE
DRVFAEGSGRSKKEAETNAAKVALQQFENSFTDEDNI
>cbdbA466 rpoA, DNA-directed RNA polymerase, alpha subunit
MSDLAIPTISCTESDGKYGRFVVEPLEKGFGTTMGNSLRRILLSYLDGVA
ITRVRIDGIQHEFCALPKAKEDTLDFLLNLKNIRVESLSGLEGILYLRAS
GSKVVTAADIEPSNDFEVVNPELYLLTLDSDDAVLNVELEVELGRGYRPP
ESAENTPIGTIPVDAIFTPIRKVNFTTEPMHVGRETSLERLVLEVWTDGT
VEPATAVSRSADILVKQFASLVSHSKVVAEIEASEPVKYTIPEEKYNMPI
EQLDLSVRAVNCLRHAGITTVGEVINRGTKELLTLRNFGLKSLTELEDRL
KTIGLSLNPEDELFEEAENNKKKNKGIDED
>cbdbA586 rpoB, DNA-directed RNA polymerase, beta subunit
MVSMLPKADAATGVIRKSYAQLPEVVNVPNLIEMQLQSFVWFQEEGLREL
IEEISPIKDFVGNRLELEFIGYEFREPRLSEYECTQRDQTYSVPLYVKAR
LIVKTTGEIKEPFDLFFGDIPLMTALGTFITSGTERVVVSQLLRSPGVYF
TISDDPATGRPLCHTNLIPSRGAWLEFETSNRDVISVKIDGRRKIPVSTL
LRAIGYSDDLDILNLFEVIDNDPERHYIQSSIDRDPLIKDEISALIDIYS
RLRPGDPPNADNARKLINEMFFDPQHYDLGKVGRYKVNRRLELPSREVGE
NRALTREDIVAIIQRIIMVNNGQDTPDDIDHLGNRRIRTVGELVQNQFRI
GLVRLERVARERMSIVNLEMVTPSALVNIRPVVSAVKEFFGGSQLSQFMD
QTNPLAEITNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEG
PNIGLIGSLATYSRINRYGFVETPYRKVYSKLKNNDKKLVGLKLKIEISE
KGKVLAAAGSTISEDSFKLISKLPECDISVMPFVSAEVKYMPADEEDRYI
IAQANTRLDEKGYFLDDRIEARSAERYVVEPPDKIDYMDVSPKQIFSVAA
SLIPFLEHDDANRALMGANMQRQAVPLLRAEAPMVATGMEREAARYSGQV
IFAKHAGVASSVTSEKIIIRTAEGGHDEYLLKKFVRTNQGTCINQHAIIN
KGQKIAAGQVLADSSATENGELALGQNCVVAFMSWQGFNYEDAIILSERL
VREDAFTSIHITKHELEARDTKLGVEEITRDIPNVGEESLRELDEDGIIR
IGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKAREVKDTSLRMPH
GEWGKVINVRIFSRDSGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGN
KGVISIIAPVEDMPYLPDGTPVDVVLNPIGVPSRMNLGQILETHLGWAGH
LLGFRVATPVFDGADDTVIEDALARSWLSAKAGAIDMSPENKRPSADAHK
AIEWIKQQGFDGKKIFDEKHPGLAKEVSLKLWLKDMGVDASALSGAELEK
KAYDVSSQSRLPSPIVGKSVLRDGRTGETFDQPVTVGNMYILKLIHLVED
KVHARATGPYSLISQQPLGGKAQFGGQRFGEMEVWAMYAYGTAHNLQEML
TIKSDDIAGRAKAYESIVKGEDVLQPGVPESFKVLVKELQSLGLAVEVIN
EEVKIAPSEKVSSLNEGNLPASDEISAEILPETLYANTEDISEDSMMSVI
DADDQDLVVSSNDEEVSENDERS
>cbdbA587 rpoC, DNA-directed RNA polymerase, beta' subunit
MNEVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCER
IFGPIKDFECACGKYKRIRYKGIICDKCGVEIARAKVRRERMGHIELACP
VGHIWFTRGIPSRVGLLLNLSTRSLERIIYYSHFIITAVNDDAREKAIKD
LEVISSQRVADKGSEVDTRVAQMEAEDATVEAINQIRRDFSTEREQMEED
IQLLIDQLKDLQKGNLLTENQYYELKQRFSNVFEASMGAEALLKLLSYID
MDKERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPV
LPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRN
EKRMLQEAVDSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLKLSQCGLPRRMALELFKPFVMHRLVRDGLAPNI
KSARRLVERARPEVYDILEEVVKDRPVLLNRAPTLHRLSIQAFEPVLIDG
SALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEARETMLSIHNMMLPS
SGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFGDFEEAKRYYEMGIIDL
RAIIKVRDGKGNMLETTTGRIIFNDVLPKAVEFQNMDIPKSAIKKIIGRC
YKILSSQDMAVMLDKIKELGFKFATSSGISIAMSDISVPREKTKLVAAAD
ERTAIAEGQFARGLITEDERYNSIIETWMETTDRITDAIQAGFDKQGSVY
MMANSGAKGNISQIRQMAGLRGLMTNPSGRIIDFPIKSSLREGLTALEYF
ISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVIILQEDCGTANGTWII
EPKEKGMLPPLVDRILGRWTAHNVVHPQTGEIIVDNNEEIDEIKAKAIGE
AGITEVFVRSPLTCESTHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIG
EPGTQLTLRTFHTGGVVGVDITTGLPRVEELFEARPPKVQSIISEIDGVV
EVIENENGRHIRIASDEVYQDEYELPSGWKTQVQSRQWVDSGMVLASPEL
EGKSKAVVQSDQNVVARVAGEVTVEGNLITIKYSESEEREYTIPAAMQIK
VKTGDTIRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQKVYYSQGVH
INDKHIEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGG
EPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGL
KENVIIGKLIPAQCKSCKEATIERAERIAAAASAPAMSGLPENCL
>cbdbA525 rpoD, RNA polymerase, sigma factor
MPAEKDKKEFSPDDIDDDKDAEQGLANIHDEQDAEAEGDKLAEPDLKDIA
DTDIPAELTEEELAAEADLIPDTDEEISPLNIDLDIPLEQIDTQGIVDDP
VRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAA
ESFLCMLRELAQATEVLFQLGQELGMDTSASLKTIIHNPKLRTAIDHEID
QQLTKNISDNTGKSMAEIEQSFINLAINSSLLPKVVLDAIPEKMTIPEIS
DHTYDTTFINHLERHEASLKYYLDNLEIDAKRAERHLIQANLRLVVSVAK
KHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKFSTYATWWIRQAITRA
IADQARTIRIPVHMVETINKLLSISRQLSQKLGREPTPDEIALEMDLPPE
KVREIAKVSQLPVSLESPIGEEEDSHLGDFIEDQNALAPPDAASRQLLKE
QIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQIEA
KALRKLRHPSRSRKLKDYLE