Gene list
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COG category: Transcription
Organism: Dehalococcoides sp. CBDB1, CBDB1
Number of genes found: 105
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Dehalococcoides sp. CBDB1, CBDB1 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | cbdbA158 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 148425 | 693 | + | 0.50938 |
NA | cbdbA381 | transcriptional regulator | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 321374 | 792 | + | 0.502525 |
NA | cbdbA1412 | excisionase family DNA binding protein | SubName: Full=Excisionase family DNA binding protein; | chromosome | CDS | 1122011 | 414 | - | 0.475845 |
NA | cbdbA1075 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 872580 | 744 | - | 0.439516 |
NA | cbdbA1041 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 843260 | 699 | - | 0.469242 |
NA | cbdbA137 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 129925 | 660 | - | 0.456061 |
NA | cbdbA1361 | heat-inducible transcription repressor HrcA | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 1079717 | 1038 | - | 0.480732 |
NA | cbdbA1665 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1345710 | 138 | - | 0.5 |
NA | cbdbA276 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 242867 | 402 | - | 0.495025 |
NA | cbdbA647 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 532230 | 675 | - | 0.485926 |
NA | cbdbA386 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 327230 | 699 | - | 0.480687 |
NA | cbdbA488 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 395418 | 423 | + | 0.479905 |
NA | cbdbA1330 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1054831 | 282 | + | 0.432624 |
NA | cbdbA286 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 251537 | 528 | + | 0.496212 |
NA | cbdbA857 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 702049 | 645 | - | 0.404651 |
NA | cbdbA151 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 144940 | 372 | - | 0.465054 |
NA | cbdbA1298 | RNA polymerase sigma-70 factor, ECF subfamily | SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily; | chromosome | CDS | 1029707 | 540 | - | 0.481481 |
NA | cbdbA1165 | TfoX domain protein | SubName: Full=TfoX domain protein; | chromosome | CDS | 945895 | 336 | - | 0.446429 |
NA | cbdbA1611 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1301068 | 432 | - | 0.476852 |
NA | cbdbA1053 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 855674 | 672 | - | 0.44494 |
NA | cbdbA523 | DNA-binding protein | SubName: Full=DNA-binding protein; | chromosome | CDS | 423748 | 204 | + | 0.490196 |
NA | cbdbA1404 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1118933 | 621 | + | 0.478261 |
NA | cbdbA784 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 639972 | 300 | - | 0.476667 |
NA | cbdbA1373 | putative transcriptional regulator, MerR family | SubName: Full=Putative transcriptional regulator, MerR family; | chromosome | CDS | 1092469 | 306 | + | 0.46732 |
NA | cbdbA595 | histone acetyltransferase, ELP3 family | SubName: Full=Histone acetyltransferase, ELP3 family; | chromosome | CDS | 487987 | 1380 | + | 0.517391 |
NA | cbdbA610 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 498581 | 960 | - | 0.466667 |
NA | cbdbA1264 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1010876 | 804 | - | 0.508706 |
NA | cbdbA108 | putative helicase (Snf2 family) | SubName: Full=Putative helicase (Snf2 family); | chromosome | CDS | 97184 | 3102 | + | 0.411992 |
NA | cbdbA1383 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1101923 | 249 | + | 0.481928 |
NA | cbdbA1085 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 879535 | 480 | + | 0.452083 |
NA | cbdbA1083 | putative transcriptional regulator, PadR-like family | SubName: Full=Putative transcriptional regulator, PadR-like family; | chromosome | CDS | 878796 | 549 | + | 0.429872 |
NA | cbdbA1288 | DNA-binding protein | SubName: Full=DNA-binding protein; | chromosome | CDS | 1021195 | 210 | + | 0.404762 |
NA | cbdbB7 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 90541 | 234 | + | 0.448718 |
NA | cbdbA1533 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1220195 | 612 | + | 0.388889 |
NA | cbdbA1277 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1016447 | 459 | + | 0.470588 |
NA | cbdbA1470 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1159007 | 777 | - | 0.503218 |
NA | cbdbA1032 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 833548 | 684 | + | 0.476608 |
NA | cbdbA63 | transcriptional repressor, ROK family | SubName: Full=Transcriptional repressor, ROK family; | chromosome | CDS | 40843 | 1008 | + | 0.531746 |
NA | cbdbA937 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 766702 | 630 | + | 0.438095 |
NA | cbdbA1483 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1168911 | 636 | - | 0.444969 |
NA | cbdbA1710 | transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 1373696 | 273 | + | 0.487179 |
NA | cbdbA948 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 775146 | 315 | - | 0.457143 |
NA | cbdbA1647 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1332468 | 678 | - | 0.438053 |
NA | cbdbA952 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 779542 | 318 | - | 0.449686 |
NA | cbdbA966 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 788822 | 339 | + | 0.474926 |
NA | cbdbA1301 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 1030853 | 678 | + | 0.458702 |
NA | cbdbA1198 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 969068 | 231 | - | 0.493506 |
NA | cbdbA936 | puromycin N-acetyltransferase, homolog | SubName: Full=Puromycin N-acetyltransferase, homolog; | chromosome | CDS | 766077 | 666 | + | 0.43994 |
NA | cbdbA1168 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 947004 | 300 | + | 0.393333 |
NA | cbdbB6 | hypothetical protein, containing a helix-turn-helix motif | SubName: Full=Uncharacterized protein; | chromosome | CDS | 85242 | 372 | + | 0.427419 |
NA | cbdbA1685 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1356390 | 447 | - | 0.474273 |
NA | cbdbA189 | ATP-dependent RNA helicase, DEAD | SubName: Full=ATP-dependent RNA helicase, DEAD; | chromosome | CDS | 172497 | 1686 | + | 0.514235 |
NA | cbdbA1291 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 1023154 | 483 | + | 0.482402 |
NA | cbdbA1532 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1218773 | 1050 | + | 0.466667 |
NA | cbdbA1223 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 983208 | 753 | - | 0.460823 |
NA | cbdbA1466 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1157870 | 447 | + | 0.404922 |
greA | cbdbA743 | transcription elongation factor GreA | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 607527 | 513 | - | 0.442495 |
hypB | cbdbA1397 | hydrogenase accessory protein HypB | SubName: Full=Hydrogenase accessory protein HypB; | chromosome | CDS | 1113512 | 654 | + | 0.480122 |
kamA | cbdbA219 | L-lysine 2,3-aminomutase homologe, probable frameshift | SubName: Full=L-lysine 2,3-aminomutase homologe, probable frameshift; | chromosome | CDS | 195748 | 2127 | + | 0.480959 |
lexA | cbdbA1740 | LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 1393298 | 645 | + | 0.51938 |
mfd | cbdbA1211 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 975541 | 3447 | - | 0.501305 |
nusA | cbdbA949 | N utilization substance protein A | SubName: Full=N utilization substance protein A; | chromosome | CDS | 775435 | 1476 | - | 0.466125 |
nusB | cbdbA1206 | N utilization substance protein B | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 972996 | 432 | + | 0.460648 |
nusG | cbdbA958 | transcription antitermination protein NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 783048 | 534 | - | 0.47191 |
rdhD | cbdbA1544 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1232301 | 687 | + | 0.411936 |
rdhD | cbdbA235 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 205920 | 678 | - | 0.384956 |
rdhD | cbdbA1564 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1250136 | 693 | - | 0.388167 |
rdhD | cbdbA1567 | probable regulatory protein, LuxR domain | SubName: Full=Probable regulatory protein, LuxR domain; | chromosome | CDS | 1253762 | 975 | - | 0.428718 |
rdhD | cbdbA1551 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1239510 | 642 | - | 0.366044 |
rdhD | cbdbA1602 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 1293398 | 1056 | + | 0.446023 |
rdhD | cbdbA184 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 167058 | 681 | - | 0.43906 |
rdhD | cbdbA78 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 58960 | 708 | - | 0.379943 |
rdhD | cbdbA1552 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1240329 | 693 | - | 0.380952 |
rdhD | cbdbA100 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 84186 | 687 | + | 0.36099 |
rdhD | cbdbA1493 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1180453 | 684 | + | 0.421053 |
rdhD | cbdbA1630 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1322419 | 678 | + | 0.439528 |
rdhD | cbdbA1589 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1276045 | 678 | - | 0.461652 |
rdhD | cbdbA83 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 66580 | 702 | + | 0.37037 |
rdhD | cbdbA240 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 210286 | 684 | - | 0.369883 |
rdhD | cbdbA1548 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 1236600 | 717 | + | 0.382148 |
rdhD | cbdbA90 | DNA-binding response regulato | SubName: Full=DNA-binding response regulato; | chromosome | CDS | 75349 | 684 | - | 0.406433 |
rdhD | cbdbA1497 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1186279 | 672 | + | 0.397321 |
rdhD | cbdbA1511 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1196848 | 672 | + | 0.389881 |
rdhR | cbdbA1091 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 885119 | 462 | - | 0.426407 |
rdhR | cbdbA1625 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1318637 | 489 | + | 0.396728 |
rdhR | cbdbA1534 | transcriptional regulator, MarR family,probable | SubName: Full=Transcriptional regulator, MarR family,probable; | chromosome | CDS | 1221553 | 489 | + | 0.376278 |
rdhR | cbdbA1583 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1271952 | 522 | - | 0.43295 |
rdhR | cbdbA1596 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1285082 | 516 | + | 0.418605 |
rdhR | cbdbA1619 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1311430 | 525 | + | 0.438095 |
rdhR | cbdbA1622 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1315966 | 435 | - | 0.425287 |
rdhR | cbdbA1616 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1308689 | 450 | - | 0.46 |
rdhR | cbdbA1509 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1195021 | 540 | + | 0.381481 |
rdhR | cbdbA1576 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1265283 | 477 | + | 0.373166 |
rdhR | cbdbA1553 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1241686 | 513 | + | 0.380117 |
rdhR | cbdbA1571 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1259380 | 507 | + | 0.366864 |
rdhR | cbdbA855 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 698589 | 486 | + | 0.438272 |
rdhR | cbdbA1456 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1149998 | 591 | + | 0.414552 |
recG | cbdbA1194 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 963716 | 2223 | + | 0.507872 |
relA | cbdbA5 | GTP pyrophosphokinase | SubName: Full=GTP pyrophosphokinase; EC=2.7.6.5; | chromosome | CDS | 6017 | 2187 | - | 0.512574 |
rho | cbdbA1369 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 1087496 | 1275 | - | 0.531765 |
rnc | cbdbA994 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 806931 | 714 | + | 0.469188 |
rpoA | cbdbA466 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 379643 | 993 | + | 0.469285 |
rpoB | cbdbA586 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 476185 | 3822 | + | 0.490058 |
rpoC | cbdbA587 | DNA-directed RNA polymerase, beta' subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 479993 | 3888 | + | 0.502058 |
rpoD | cbdbA525 | RNA polymerase, sigma factor | RecName: Full=RNA polymerase sigma factor SigA; | chromosome | CDS | 426698 | 1563 | - | 0.50032 |