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# Idiomarina loihiensis L2TR, L2TR

>IL2190 Transcriptional regulator, LysR family
MGIKIPNMKPNYSLDDMRCFCMVAQYGSFKQAAVALQMPLSTLSRRIAKL
EQDLALRLFNRDAHRVQLTFAGQRYYRRSAPIFDELDNVAACLQQDRNEA
KGTIRISAPINFSVQVLVHHFNAFMRQYPDIELDLKLSNQTIDIDEEAMD
LAFRIGHHSATHWIGRQLTNIRFAICGPANLDVSHIKAPADLAGLPTVLC
SPMLTWSLQHIHSGEKQAYTATDNIRLKVDDMSLLTEVIAGGIGVGFIPD
YHAQPLLESGKIQHILPAWSNQARGCEMLYRDRENIPYRVRLFIDFMLQR
FKSNDGVM
>IL0640 Predicted transcriptional regulator
MKLMKVKEVMHVTSLARPTIYKYMAKGQFPKPVSLGGRAVAWVADEIDDW
IMQCIAERDAESDIEAD
>IL0277 Transcriptional regulator, TetR family
MAGIRAKQKEKTRQALINAAMNQLSAENGFSSLSLREVAREAGIAPTSFY
RHFRDMDELGLTLVDECGLALRQLLRQARQRIESGGSIIRVSIETFMQFV
ANNTATFRLLLQERSGRSRSFRLAVVREIDHFKAELEDYLVNEQSFSREL
AELQSDTIAKIVFSAGADCFDVDEEEREIITEKTILQVRLVARGAEATRR
LLKRES
>IL1491 ATP-dependent RNA helicase
MNFSDLALSPETLTALSRQGYSESTPIQAEAIPLVLAGKDVMAAAQTGTG
KTTAFTAPLLELLKSNERAKANTARVLILTPTRELAAQVGENVANLSAGL
PLNYAVAFGGVKINPQMMKLRKGVDILVATPGRLLDLYKQNAVRFPKLEV
LVLDEADRMLDMGFIHDIKNIIKLLPAKRQTLLFSATFSDDIRALAKGLL
KSPVEISVALPNATAEPIEQTLYEVQKSQKLGLLLKLLKSLDLPQVLVFS
RTKQGANRLVKQLDKAGFSAAAIHSAKSQGARTKALADFKSAKVQMLIAT
DIASRGIDIEKLPYVINYDLPHVAEDYIHRIGRTGRAGQTGHAISLVTDE
DVAALKAIEELIGETIEQCKLE
>IL0923 Response regulator containing a CheY-like receiver domain and an HD-GYP domain
MSNQFMFADETSQQTTKLPTEYWKILIVDDEPEVHAVTKLALNDFNFLGR
GLKFYSAFSGEEAKRLIDEHPDAAILLLDVVMETDDAGLQVARYIREEAD
NHFTRIILRTGQPGQAPERTVIVNYDINDYKSKTELTAQKLFTAVMSSLR
SYRDIMSIDQSRHGLEKIIAASANLYALQPMNSFVDGLVQQLSWVIGGAK
QTLYATSNEDGSSYKVLAAHGEDSGVCVGQTLRSVIPSKALAELEHVIAN
HGSYYGDDFVLLYCRSHCRSHGSVLFIGGLSRALTADDHHVLQLFSENVQ
LAQDNVVCLEDSDQFLARLADQLMLHHASHFNGILEQNSEVRLAYAVAQK
VAAEDAETTALAWSLFAQARPLLNCASDAAAAVETTCQQRVARSLRALGH
GEHEATQNAHRALIERLERWDGLGLPEGKQGSDIAISTQVLLLTEQLLDW
WESGISDSDIAVRLKDERGRYYSPKFLDVVIKSLPELRTI
>IL1261 Response regulator of the LytR/AlgR family
MNRLKTLVIDDEPLARKGLAIRLQAFEQLQLMPECKSSREAVDIIIENKP
DLIFLDIQMPGLNGFEVLKAVQEKGHELPVVVFVTAYDTYAIKAFEVRAL
DYLLKPVDDDRLAECVNRVISEHQTVNDEHQEKLISLVAEVTGQDTHTLL
QKLASGESITADQYPEYIAIKDSGEITRVAVKDIKWIDAAGDYMCIHAGD
DTHILRRTMKELEQDLNPKLFQRVHRSAIVNIKQVEKLCNQQNGEYHLQL
KNGQKLKVSRSYKDRIKQLILS
>IL2153 Response regulator, LuxR family (CheY, HTH domains)
MARAIIADDHPLFRAAMKQALSESLESDIIEASSFSQLEQQLQQFPQIEL
VFLDLSMPGNRGLTGLSVLRSQFPDILVVIVSANEDTRVIRQAMALGASG
YIPKSVPLPEWQTAVTTVLSGDNWLPESMRTVSLTEPDVEMSDFANKLEQ
LTPQQFKVLQCIADGLLNKQIAYELGVQETTIKQHASAILRKLKCVNRTQ
AGILFRQMLDTPDTLE
>IL0692 Transcriptional regulator, TetR family
MKFLDDWSNIDRMTKNDTRQNIITIGADLISIHGFGSTGLNKILSEAQVP
KGSFYHYFKSKNDFGLAVIETYAEDYEARMDETLANETLEPVDRLRSYLR
RSVEDLKSCDFSKGCLIGNLGQEMASQSDLFRERLDDIFSDWEQRIARCL
KAAQDAQQIQQCIDTEQMGAFILSGWQGALLRAKVQRSMLPLLRFEEMIL
KQLGAVDQ
>IL1254 Transcriptional regulator, LysR family
MFDVAARSGSFKQASQELGVTQSAVTRQIQTLEEQLEVRLFQRDNRVHSL
TPVGLELAPQIEQIFEQLERTIERTRNLSDNTTTQLTVAISSERLRFWLA
AKLADFHSLYPHIQLSFSRCNEYFINESAAEMASAIQHQSWDLAIGYGKV
TDKHIQSIVLQKNQMLPVSAIKTNNSPFQLPWLINPENPDHQAMLKTYSQ
QLKSTRIIHCNDVQMSLDLSSAEQAVALIDSSLITPGLSNLKVYNDSAQP
CQYPLSIYYRKRQRQPVALVAFIKWLQMIIS
>IL2423 DNA-directed RNA polymerase specialized sigma factor
MHSNIAALTQHVKHAQAGDKSAFAEIVQCTQNLVASVALAIVQDVKASED
VAQEAYILAWQKMNQLKQAQSFLPWLRQTTRHCAYQWLEKEKHNHRQHQK
PLDKELEQLIATEQPDEDFTQQQRNQIIAQALTRLPDDSRDIVLLYYREQ
QSSEHVAELLGVDAATVRKRLSRARKMLAANLLSRVGKAALLSAPSLSVT
TILSSALTFGSPPAAAAGLSASGALGSGIKWITFLGIAAIGIFAALAGLF
IGSRQAQKYAPTHQAKQHLVRLRNRAAVFLVVIGGLFFASYELDPGWILP
LATYSLLVTGIMYYQVQVQRHVNNPKSKRWSCYLGAILGFGGGGISFIAG
LIMSGRL
>IL2204 Serine/threonine protein kinase
MAEVHPDNNFPYPIPARYQSIKLLGQGGSGLVYKAYDQRLKRTVAIKFAR
SPSIVSRHRLVNEARLLSSVDHPALCRVFDVGEPEVSSSSLFMVLEYIEG
KPLSKQRSCLSVYDAAKVVKSLTDGVCRMHEAGYAHNDITAQNIMIRSAD
NAEGESNNSAVLVDLSIAAPSSPTTIKRDIYQLGALLLSLLTNMKPEHFF
QHPITHRNRLPAELSRIVKKALSAEPNEGFQHCRELQQELDGWLRNYQLR
KRFFWLGAGGAAILVIIFVLFIFLREQTNRHLLDGYSVEQNQYAHALVFA
HYSRHLANGGQLQQAAEQAELALTHFDDAVASSPELLKYHSERAHFVLSS
DNIFTRSQRTTMLLNAINELGNPDIYEEKAAAHYLRAEMYLGLAELNSEQ
PHLVERWKASALSSVEAAIKHQPDVDRYQQLRTEIDKSQSSAGTD
>IL0402 Transcriptional regulator, TetR family
MVEKKGAGRPSNRDVILDAADQLVAAEGAGHLTFDALSQTTGISKGGLLY
HFKSKDCLLQAMLKRRVERYEKLREQYHHQFADDPKGELKSILLAALDTD
AECSRLGSGMLAAAATNPELLGPLKEHIALTLQRLERIAGSKVGKTLFYA
VHGARLFEQLNLCDACVHEREDFAQYLLKLVDELTEIESIR
>IL2218 Transcription regulator
MNSLQNHLLIATPMLNDPMFKRTVTYICEHNEEGAMGLVINQPADLSVTS
LLDKLEIVYPENNQHLQGSVYQGGPVGRERGFVIHPPQDNWRASQKMSDD
IMVTTSRDILEALGSSAAPPQFLLTLGYAGWEAGQLEEELGENSWLAIPA
DPELLFNTPPSERWQKATEQLGFDVWQLGPDVGHA
>IL0606 Transcriptional regulator, LysR family
MNTIKDIDLNLLVYLDVLLREKNVTRAAAQLNITQPAMSNGLKRLRNLLN
DPILVRTSEGMVPTQRALDMQEALRGVLYSVEEMIQPVREFDAPTSDQVF
RIMASDYAASTLMPKLLEKLDEQAPHVSLDIMTPSDISFHDVENGKVDLA
INRFEQLPQSFHQKNLWSDEFSCLIRKDHPLLQDYTLDNYLKAQHVWVSK
TGFGVGVGMDPHDVQKLGWVDDALDKLGKRRKIKVFTRNYHVAMYLARQG
LVATLPTRAAELYSQDSQLVMKAPPFEIPGLTLTMIWSPLLQHDAGHRWF
RQVVAETAAAS
>IL1648 Response regulator (CheY, wHTH domains)
MRLLLLEDDKTLAEGIIKGLNRMGYMVELAMNLSQAESALKTDQFELAIF
DLGLPDGNAVSLIKKLRKAGQPVPIVVLTAWDDVDTKVLALNEGANDYVV
KPFELRELEARVRVQVRKANLQLNDVINCGDLSVDIASQQCRFQRKLINL
TRLEWILLKQLALHVGKIVSKEQLETACYGWDSDNESNSLEVHIHHLRKK
LNPSLITTIRGLGYLLKDESS
>IL1611 Transcriptional regulator, LysR family
MQVSLQALKAFEAAARRGSFKLAAEELSLTPTAISHHISNLEGRLNVNLF
HRQGRRIALTGAGRRLAEATSDGFRKIENSLEELLTAGNTVRVTTTSSLA
AMVLIPSQNEFEQINPGISVEISTGESVDNQSYIIPIRFGDSTAIEPSDV
IKSESFNVFGASGMKPPSWSNEPITLFTTEWKNKALPDSPLEAWLAMNGL
EGSNIKLKKFDQELFGIQQAMAENGLVFCSTTLTKRLLNANLLQQFKTQP
VESDLCYYVPNKRSFETRSAVPFLDWIEGLLSP
>IL2419 Transcriptional regulator, Cro/CI family
MTDKDKTAINEAIAKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRA
NPSIGILCKLANALAVSVADIVAVSDDPKVTIRQPQDIPTLWNGDHGGVA
RLLAGSKGTIMIELWRWSMFPKEQFVSEAHSKGTIELIHVEGGCLDVLVN
EETYTLSAGDSMTAEMDVAHTYQNSTNEPVHFTMTVYEKSR
>IL0056 Membrane associated protein containing xre-family DNA-binding HTH domain
MIKKLRERKNWSQEQLAIMSGLSVRTIQRIESGNKASMESLKSLASVFEV
DVSKLTEEITVIDKESKYWKQQPVWFKLSLFGVNRRNKLVWVEYLSVLLG
LATWIIHPDIFATSAFFLAAYLISKLVNRADSRKVW
>IL0865 Transcriptional regulator, LysR family
MRKLPPLNALKSFEVAARHLSFTKAAEELFVTQAAVSHQVKALEDFLELK
LFIRRNRSLLLTEEGQEYYLELRDIFEQLAQATDKLRLVSERGALTVSVP
PSFAILWFVPRLSSFREEHPDMDIRIKAVDEISGSLTDDVDVAIYYGDGR
WPGVKAYQLHEEYLWPVCSPLLLNKANIKEPIDLFKQTLLHDETRNAWKD
WFQLVGLPQYKGDNGPVFSHSSLALQAAVHGQGIALANNVLVKSEIDSGH
LVRIFPQALQRNKAFYLVCRDNQAEIGKIATFRQWLLNLVQKEEQEFNQ
>IL0054 DNA-directed RNA polymerase specialized sigma subunit
MTLQQHKAKISDLALQHGRLVFHCAYRLLSDTHLAEDVTQDVFIKLFKKS
LKSMNEVKNWPAYLKSMAVTTAIDYLRRNKRLAEDDLESVPENESDTSRH
PLNQVLRDRDLILFKQALLQLTEQDAHIYCLRHVEGYSYQEIAELMHVSS
NSVGVSLHRSQLKLSSIVGKSEYLGARHEH
>IL1206 Response regulator, LuxR family (CheY, HTH domains)
MKVLIIDPQFFMRAGLIQILTNYANQPSIYEAESFEIAENYLSADDYDLI
FLEMDLPDAEIRPALQRLKKVAPRTHIVLFTRPRSISEVRQVLAAGVRSY
LPKDSSAEQAKLAIRALLNGDRHIPDDPHLNEPRDKSSGAESFLSPRQLE
IMQLLAQGLSNKEIANILGITEGTIRVHLSAIFKAIKVSNRTEATLWYLL
RQKKLVD
>IL2006 Response regulator, LuxR family (CheY, HTH domains)
MAKFLIADDHPLFREALQGALANHFSELTLREAEDLDSTLTALNNDDDVD
LLLLDLHMPGSGDLYGLIRVREDYPLLPVAIISGSEDSSIVAKCIGFGAL
GFIPKSLPSAEIAEAIDTILQGDTWVPKENRERLDVISDEDQQLAQKVSE
LTPQQYRVLHFLHEGLLNKQIAYQLGITEATVKAHITAIFRKLGVYSRTQ
AVLVAERLQL
>IL1815 Acetyltransferase, GNAT family
MIREYQEADLERVLEIWLSASIKAHSFIEAEFWESKVSDMREMYIPASET
FVFEFEGEIYGFYSLYEHTLAAIFVTPGAQGKGIGTLLLNDAKSRRESLQ
LAVYKGNSPSISFYEKHGFISTDEKVDEHTGHPELIMEYTS
>IL1936 DNA-directed RNA polymerase specialized sigma subunit
MQSETACEDVRLAAQGDVEAFQRLYHLYIRQVYGLVLRLCADRTLADDVV
QEVFVQLWQKLSSFRGEAKFSSWLYRVATNICLTEMRKRNRWFSRFLSQE
HKAHEEFDEGEMDIHQLDRLIFKLPEQTRQVFVLHALQGESHQQIANWPG
IAVGTSKAQFHRARKKLEESLQDGK
>IL2601 Hypothetical protein
MGNGGDNSAAFVAMLLPIMLFSTFIYMPYRIITDPTKKYRFDDDYLYIDS
KSHTEQIKLGAINDVLVKPKWMRLLATPYIILHAKGKEIKIPSGFKLSNE
DYVYFKSKVVVKEQ
>IL0303 Transcriptional regulator, PaiB homolog
MYVPKHFEEDDNAKLHQYIRDYGFGILIVADEDGIEANHLPFHLSREEGE
SLGTLQCHVARNNSVWQRLKNGGRVLAVFQGPDGYVSPSWYPSKAESGRV
VPTWNYLAVHAAGKARIVEDATWLKQHLMKLTDQHESGMKEPWQVNDAPE
DFTDRLVKAIVGIEIEIETLTGKLKASQNLPERNRAGVKAGLEGSDQPQS
CAMSKFVS
>IL1291 Transcriptional regulator, LysR family
MSFPDVTNYYLFAQVMACGSISAASRELGLPKSTISRKMALLEQEQGTRL
FHRSRSGLKLTDVGREFLVHCERLVSAAESAQQVTQRLLDKPRGKVEISA
PYALSQSLLVQVLPEFMSLYPEVEIQLVVTNRPVNLIEEGIDIALRVRKN
IEDSSLIARPISQAPQTLYIAPDLINQNSITEPEDLLTFEHLSMHYTNGR
YGYELIHSSGLQKNIRIKPRLITDDMIVLREAAIKKLGIVALPNYLCNDA
VNSGELVPVLTDWHLPIGIMHITYSHRRGILPAVRVLIDFLAEKLPHLAQ
QQF
>IL0627 Transcriptional regulator, LysR family
MINLRQLQVFKTIAETSGFTAASVQLNMTTSAVSINLKDIEQQLGTRLVM
RERGRKHRSHKVELTVAGMWLYERAQKMLSLSDSTERYFEQLHSNRRETL
NIGASQTVGNYWLPAYINVLKQQRSELKINVYIGNTDEILSRVESFQDEI
GLVEGPSSRDDLLTKPFKEDSMTLVAPPDDNGKALEVQPWLIREKGSATR
RLTEKLWAKLGIKPANVIELNTNESIIHSVASGIGVAYVPSITTPLMLEA
GLVRALPTEGTHHRTLYYVTHRDLSFSMAWIERVIAEKAL
>IL1164 Predicted regulatory protein containing AraC-type DNA-binding domain and DSBH domain
MTKTTGNPTQTTEALNELLEQVARGTELHFESGLCGHWTLMAKEPGKVAF
HVVTNGDCWFGLPGSSVEPIKLSASDIIFVNKDVSHFLSKTQIPSDISES
DIPKYCQRDHEQSGVVCYDVNSAPGANDTLFQLLPPWLILKQADQHQQLS
HIIELIRAETINQSPGYQTVISRLSDVLSLNLLRQVIDEDESLRGPLAAL
SDRQLRTVIMAVINEPGADWTVERLAELAYLSVSAFAERCIKKTGVTPKK
LVDQLRLQRARIMLSSSQLSMDLIAEQLGYQSATAFSRFFKKYAGLSPAE
YRHQTYY
>IL0302 Transcriptional regulator, Cro/CI/xre family
MSDILKSVHKTAKGLKNSGVIDKTTMRKFDALCLTTVHEFSAEQVRALRL
KYKLSQPVFAQYLNVSDKLVKKWEQGDSKPRGAALKMLSIAEKKGLEVIA
>IL1227 Uncharacterized conserved membrane protein
MSEKKRSSQWRVWHRWLSLVFGLQMVIWTISGAYMVFFDLDYIHGDHLVQ
DVSQPLPEGTEVSDLDKLLTRYPETEKASLEARRLDGKLQPVYKLKSDKG
EFLVNAKSLERIEITQHHIEDLANRYYAQESADIESVVYMTDNPPTEISE
TLLPVWQVNYDDFGNTSLYLSETTGDLLVKRHTFWRGFDIVWMLHIMDYD
ERVDIETWWLKAFIIGTFILMITGIVLLLYTITFKRRPIGGAQ
>IL0047 Transcriptional regulator, DeoR family
MTGPTTRVLALLELLQSHKRLSGTEIAEMLGVDKRTVRRYISALEELGIP
VTTEHGPHGGYMLVAGFKLPPMMFTHEETLALSLGLLAAKTLQLTDASPA
LTSVQAKLERVMPEHIQARARSITQHTNLLLPDSGLPQEQSLLMPLMEAI
ESQRRVQVVYVGKAEPGQQRELDPYGMFYRLGHWYIGGFCHLRQALRTFR
LDRLAEVTLLKATFERPLNYNAAEQFKQSLCAMPGNLKVRVLLHTDLDTA
TRELGTSASILTQEDNAIFIETVVDSTEWFAWWLVRLPFDFTIISPDSLK
QALRRRAEQLMGYC
>IL2095 Transcriptional regulator, LysR family
MKHLSLEALRSFSAVIELGSMTLAGERMGRSQPAISLQLKKLEQQLGVEL
LTRQGSGFALTADGDVLFDYAQRMLALNDQAWAQFEPQQVSGKVRLGITS
EFASSLLPKVLGQFAQVYPQVTLQVTSALSKDLLSGLGQQFDIILALREQ
TNKSDVLIQREELVWVGLPGLLEQPGWPMVVAPEGCIYRRRAEQSLQRAH
QPYRITYTNTDFSGLTAALNSGLGITVLAKSTVPKDIPILESFSDNKPLP
NPGSVNVIMRLAGGASSAASQLADYLKARI
>IL2041 Predicted transcriptional regulator, YjeB/RRF2 family
MRLTSKGRYAVTAMLDVALFTANGPVPLADISERQGISLSYLEQLFSRLR
KHGLVDSVRGPGGGYRLGCAANDISVGAVIHAVDESIDATRCQGKANCQG
GERCLTHSLWEGLSDRISDFLDGITLAELMKKEDVGDVLNRQNALHNHSE
EEIKLNSHL
>IL0169 Transcriptional regulator, ArsR family
MSATESQEMHQEEAQNAASFLRSLGNPHRLQILCRLALGEQSVGQLHQFF
DLSPSAFSQHLAVLRQQQLVSIRKESQTVYYSIKDPDTEAFMTLLKDKFC
PSL
>IL2267 Signaling protein (CHEY,EAL,GGDEF domains)
MVSSQDEPLFLHDDDEVTPAEYSKGFWKILIVDDDQEIHAVTKMALADVI
ISGRQLEFFHAYSGSEALDRLTEHDDIAMVLLDVVMETDDAGLKVAQAIR
EQLGNDEIRIVLRTGQPGYAPEESVVKNYDINDYKTKTELTRSRLLTTVF
SAVRSYQQLCTINENRRGLRKIIHSASNLMEKHSIVNFSEGVVTQIASLL
GLNAEGIVGARAPHKDNDILVLGAAGHFANSINKSLSTLNSDEIEKNVRK
CLNEQRHIHTDTATVFFIDGQAHQAAAYIETKNAVAEYDQELLEVFLANI
AVGFENANLFEELRTAAYLDPLTGIPNRAEFTRCLQVLSEKPDKDKMIAV
IDIDHFSDVNDGLGQDVGNLLLRAVALRLTDQLGDKVFVSRISADVFGVY
GPANIVTPNAFSELFALPFRAGEHYIPLRVTCGFASATNPESVNGKGLLK
QVYIALKNAKNNSFDRYNYYEPSMEQDTQRRLHLVRRLRADFANRKLQVW
YQPQVELKTKKVVGVEALLRWPQSDGSFISPAEFIPLAEYSGLIVEIGSW
VIEEACRQINAFDEIGLPQLRVAVNVSVPQFRKRDFPELVEKQIEQWGID
PTRIELEITESIVMEDPDLVADILRRLKQQGIQVAIDDFGVGFSSLSYLQ
KLPLDRIKIDKTFVNNSDEKSGKIIIETIVDMARRLGLKVLAEGIEEQSQ
LDYFLGLDCTEGQGFFFAKPMPADQLICLLQKQMSYS
>IL2481 Transcriptional regulator, Lpr family
MDKFDEKILQELKSDGRISNIKLSERIGLSPSATFRRVQELERKRVIKGY
RVILDPEQLQIGFVAFVTIGLSDHRRSSQLAFEQHVADVPEVVECHNVTG
THEYLLRVEATDLKHFQRIHSNVLGECPHVNAITTMVVMESSKDQRS
>IL0571 Uncharacterized conserved protein
MKNSMIGVITGDIVNSRQIPVEEYDSMLYRLHQTLESFSERYQMHFDVFR
GDEFQLLLKRPEKVIYLATIIRLSLKSGSTNIDVRQSLSVGDSNELRDDV
KSSTGEAFVLSGQNLNKMKSELLIFDSTIELLKHHLGSTIELLDAHLSSI
TKTEAYVLINYLGDPEVSHAELAKEIGKSRPNTTKMLNSARYNSVLKYLY
YAENLIIEARG
>IL2297 4-Hydroxybutyrate CoA-transferase (N-terminal) fused to acetyltransferase (C-terminal) domain of GNAT superfamily
MTKTKLDWSKILKSGQRIFIGSHAAVPTALIDDLIENSKNLHDIEIVQLM
TLSDNKWAGPQYQQLFKVNTFFIGGDTVRTAVNEGRADYTPSFISDIPNL
FSNGILPLDAALIMVSPADKYGYHSMGVSVDVVAAAAKSANTVIAQVNPN
MPVTYGQSFLHTNQIHHFWEHAAPLPELPPPSLENNKIIERIGQYIALLV
ENGATLQIGVGTICAAALRYLSNHKDLGIHSELITDDVMHLMLKGVINNR
KKTFHPNKIVTSFCMGSKALYDFVDHNPHVGFYPSEYVNSPANVARNDKL
VAINSAIEVDLTGQIVSDSIGHQFYSGIGGQVDFSRGASLSKGGKPVIAL
PSTTEDGKVSRIVPFIREGAGVVTTRGHVHYVVTEFGVASLRGKSIRERA
LELIRVAHPKFRSHLLQEVRKHYWVPNYQQQTPVDVPELGDIGFKKLKIN
NESFDLRPLYPSDERRLQEFFYSHTKETLQLRYNAVPTNMTREKSCNLVS
VDQSRDLALCIVRQKGSAVQIQAVGRYYFIESQNSCEVAFVTREKYQGRG
MAGMLLDEMIRIAKERKLDSMQAYVLAANKPMLSVFERGGFKRLPSEEPG
EVLLKLELNEDAD
>IL1816 Acetyltransferase, GNAT family
MEEKDLEAVSAICLASFLQSVADSLSDEGVSTFSTIAASHSFGERMKGDN
LMLVAESDGKTVGVIELKQGRHVAMLFVSSDYQKKGVGKKLLAAALEHAR
TDIVTVSASLSSVPAYESYGFECKGATGESKGLIYQPMEIELNSSMHAK
>IL1603 Predicted transcriptional regulator, rrf2 family
MRKDSQLSRALHILIHLGQKPHPVTSETISKMLKTNPVVVRRMMGRLREN
GYVTSVKGHNGGWSLSRSLREITLLDIHKALGDKNLFTIGFTEPDSKCLI
EKAVNTQLEQTMKDAEAVLLDKFAKVTLNDLNISDSES
>IL0853 Predicted acetyltransferase, GNAT family
MQGLTEKTENEIDEAGENSNEHVQGELVYLVAEDLKLAASLLFQTYYDDE
LLQKIFRSDKPDYDKRLRAAIREDLNAFWESGQPIIGIRDGGTLLGVACL
TRPGKSFGPGRFWHWRISMLLTAGFLSTKQVLEKERLIQEAMPDVPYHML
AFIAVAPQYQSQGVGHLLVEAAKAVFEEDPESQGIAVYVTRSDYQAFFKK
RGYRIQAQIEVEKLPGEVLFYQRQPD
>IL1607 Predicted DNA-binding protein, possible transcriptional regulator
MSKLERKRHELATFLKSRRERLSPTQVGLPCGGRRRTPGLRREEVAALSG
VGLTWYTWLEQGRDISASSSFLDNLARALKLDAAERRHLFLLAHGRLPPE
PGKTFCEVPPLILRLMRDLSPHAAYVLNLRWDVLAFNKQADLLFGFNRHP
PGQRNLLWMLFTDTVLRERLVDWDSQAVQMLSSFRRDYAHATQEADIQAL
VTNLQKASPDFSQWWNRHDVDAPCQGVRDMKIENETVSFEHTSMTVDADR
HLRLVVYARGSAQGIAINDQFSATS
>IL2491 Transcriptional regulator, LysR family
MNPKMIRSLKAFTRTVELNSMSAAANELHMTVSAISQQLQRLENDNGISL
FHRNTRSLSLTEAGQVFYQSCLDMLAIAAKNQERWDQLTNQPQGQIKIIA
PVGFGGGLLSEPLKQLQHEFANVSFQLHMTDEPIDLITAGADLAIRIGPL
ADSTLYARHLADWHMVPCIAAEHPAAENSIKSFDDLPEGCFIGHIPSLPN
KDFPKPKVLLNNMQTVVQLTLDGVGYALLPQPEIKHYIESGRLLRLLPEW
EGSPYSVHAVLPIKDNIPAKTERTIEVLSHFFHRL
>IL1290 Transcriptional regulator, HTH motif containing
MATSVKLNDDMKKRVQNLANVRHRSSHWIMRQAIQDYVEREEKREAFKQD
ALRAWEDYQHNGLHLTAEEADEWLAKLESGDDAELPTCHK
>IL1744 Predicted transcriptional regulator containing the HTH domain
MNPLQLKQLIEAALFAHPQPLSAEQLYQLLLNEGEASLAAIRQQLKELQS
DYQERGIELVKVASGYRFQTRAELGQRLAGLWQEKPPRYSNALLETLALI
VYRQPITRGEIEQIRGVSVSSQIMKTLQERGWVKVVGHKEVPGRPQLYAS
TNDFLDDFNLSDLSELPDIDTLNEDDERTAETATNERDDS
>IL0527 Transcriptional regulator, Cro/CI/xre family
MLLEAKNTKVIGKVAKVVRQQQKLDQTTAGAFAGCGINFVSQFENGKPTV
QLEKALNVLNALGIKVYLDIPDSASGDKLTELTGRLNHE
>IL2449 Acetyltransferase, GNAT family fused to PaaI related uncharacterized conserved domain
MYRVITPETDEQLERYYYLRWRVLREPFQRPLGSEQDEYDQVGHHRMVVN
EAEEPVAVGRLHFNSPEEAQIRFMAVAPEYRGEGHGVAIIYALELAARKE
GATHVVINSRDNTIGFYKKCGYDVAEEADTVNNPMAEHHLRKSFTEYNRI
IYRPEWCTELQKTWQEDIPISDAMGIKIHQYTGRVFETRAVLSRNINVHG
TMFAGSIYSLGTLTCWGLLHLQLLERELEGAVVLGDGNIHYHKPVTQEPR
AIARLSDVTGDFSALKQGKNARLTIKAQILDEEQPVAEFTGRFVVLAKRD
>IL1408 NtrC family transcriptional regulator
MFGSDRLQRVLDAMSDGVYITDGNGITITVNTAYERITGIPKEKLRGLHM
SEVVKRGYISRSVSLEVLKERRPVTLTQDVSKEHQILVSGTPMFDSDGRI
EYIVTTVRDVTELLKAKRAQEKLEQLLSLREQYGASVSTDGHKEPFVISR
QMRACYDLAKRVASSSAKVLLQGETGTGKTLLARTIHSYSNVANGPFIEL
NCAAMPESLLESELFGYASGAFTGASEKGKTGLLEAANNGTLFLDEIGDL
PLTLQAKLLKVIDEKRFLPVGATSFKQTNFRLISATHHDLKKLVAESHFR
EDLLYRLSVVPIELPPLRERMEEIPVLLEHYLNHFNENYELDCRWHADVI
ARLKQYEWPGNIRELINLTERLMVTSEQSLITTAQLPIEIATDRPLGREG
CSLKEQVEMLEKKVIEEALLIHGTTRAAASALGVDQSTLVKKQKRWRIEQ
KRDLPNDE
>IL0314 Response regulator, LuxR family (CheY, HTH domains)
MKILLAEDQTMVRTALASLLRLESDYHVDEAVDGVDAQKKLQESDYDVLL
SDIEMPNLSGLELVQWAQQQQPNLRSVIITTFNRSGYIKRAIDSGVRGFL
LKDAPINELIASLQRVCLGEQVISNELLLQALGQHDPLTEKERKALRLAS
QGLSTQAIAEQLFIAPGTARNYLSEAINKLHASNRTEAARIAHQKGWL
>IL0053 Transcriptional regulator, LysR family
MSLPLRSIHYFVEVARCESFSLAAERLHVSQSAVSHQVALLEGYLGDDLF
VRRGRKILLTAVGENYFNEVAGAINAIEGATANVRQYDTRQVKLAVHGSL
AVKWLIPALDEFRQRYPNVELTLQMLTQDGNFDTQWADCFITTQPPGMGY
QRYHLYDETLKPYCSKALWAEAHRLESAGDLIQYPLLSAISAFASGEPGT
DWQRWFKKANLRLPVSARVHHFSHLLLAAEAAKYGQGIALLNEFMTTEQE
REESLFELPFHSIQTDDSFYFVYPSSTAKSPGLESLGDWLVALCRTRH
>IL0155 Response regulator, LuxR family (CheY-HTH)
MGRYTRLALIEHQKRTQNLGLLAESLEISVVHRAFSELVDHSPEPETMVA
YSLGSEQLSRSHITSEIAALTKTYPLFLVNARKDDVRPIQALNLGARGII
YENDHLDRVLTAIKVISQGELYYPRSLLSDKIEEMMLRRQADDSFTTVSQ
INSLTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARN
RVELLKWSSYATSV
>IL2391 Predicted transcriptional regulator, YjeB/RRF2 family
MQLKKYTDYGLRVLMYLAAKEDTKRATIDELSGIFNVPRNHLNKVVHQLG
KEGLIETRRGKNGGFLLAIEPADIRLDKVIRRLEGDEYWVDCHKPECAIF
PVCELKHVINQGKETFYDFLAGYTLASLVSNDAQIREFWGTPIPVTIDKD
>IL0408 Predicted transcriptional regulator, BolA superfamily
MNTEELKTLLNDALSLEELLVKAEGANVEIIAVSEDFKDMSRVKRQQAVY
GPLNPLIADGSIHAVSIKAYTPEDWARDKKLMMP
>IL1208 Response regulator containing a CheY-like receiver domain and an HD-GYP domain
MNDDFLFSDDEPDIAEEEVSEPYNILIVDDDEEIHTITKMALGEFKLDGR
PLKFHSVYSGKDAIAFLQDNTNIAMMLLDVVMETDHAGLDVAQWVRETRK
NRLIRIVLRTGQPGQAPEEDVIARYDIDDYKEKTELTYRKLVTLMYSCLR
AYRDLNAIERNKRGLEKVINASAEVFSARSMQALCQGILEQLVALITLSD
DAMYCRIDALTASSDTDDPFEIIGGTGEYEEAVGQPVHGEIDWDIVRPMQ
QSPQNVDFRIVDGNYYGLYKTSSSRQYLLFIRGVRDLSELDQNLLGLFVN
NSSIAIDNLQATENEREAQRELLYSVGEAIEKHSIDEISHHVKRSAEMAG
QLAIFSGATQEQAEALKQAASVYDIGKVSVQMELAQRADVLSIHEYEEIM
QKVIQGHDYLRQTDSAVAKVAALIAQDIHERWNGSGFPSQKSAKAIDLNA
RILSITSHFDALRTQRNYRDAKESEDAADYLLQHSGKFFDPELVGLMLDN
LDAMEKIRQRFLDKKQDTRH
>IL0008 Acetyltransferase, GNAT family
MIEITLADYSNPKHRNAVIAMLDAYAKDPMGGGEGISDDVKESLIDEMAK
RDHVFSLLAYDGDTPIGVANCVEGFSTFAAKPLMNIHDIAVIPEYRGQGV
ARKLLEEVKTLAEFRGCVKLTLEVLENNDRAKKAYENFGFAPYELGDVGQ
AEFWEMYLNKDKA
>IL0641 Hypothetical protein
MKLADNKSYDISKALNARLKGQYHSAICYEGSFSERTLIRAKQGEPVRAK
SVKAIAKALDCEPEDLLNQNDVCWLSTRNASLTNPAAINIHASLSEFIDG
VIAAAGILSYKLDQSDLEISIDFKATSLSLELCQLESGIKNYWSVKAGYP
DDTGITYIESNDSAELQLELAVERLRMSVTDNVTINGIKQFSYCHKPGWL
VVFHKFKPNDFESYVGEQHFLNAEDFQATLNEWLQGNNITDVNGEEGGVA
ISVDKKELGWNVALFNRANFGPGGGVVEAAVPPNFAKKLTTEIRSKDKSI
SCISNPECGSKLKFGPCKQSVSTY
>IL0166 Response regulator with a Fis-type DNA-binding domain (CheY, Fis domains)
MNKFRLLIIDDDEGFCGILQRRLGHHGVLVQMAHSGHQALALEGHFDGIL
LDMMLGDDNGLALIQPLKERYSPCHLVVLTGYASIATTVEAMKRGATDYL
TKPVGTNELLRRFTNEKLELEDASVNRLTPTQIEWEHIQRVLTDNQGNVS
KTARELGMHRRTLQRKLSKRSPH
>IL1772 Transcriptional regulator, LysR family
MKPWQGISEFAAVAEQQSFTAAARQLRLSVAQVSRNIAALEHRLQMQLLY
RSTRSVSLTEEGKLYLPHCQHLVASLRDADQAIQQRTQQPQGLIRITAPV
YYGERFIAPLLNDFLHIYPECRLDFQLTNEQVDLIEGSYDVAIRLGQLGN
PRLRARKLGSRRHFVVGSPAYFEEFGRPQDINALDAHRCFTGTVRQWRFQ
VEGKLETVRPESYLHCNNGLALRDAAMKGLGLAMLPDYYVTDSLANGQLE
EVLADYRQPDDGIWALYPENRQVIPKVRVLLDYLSGNLSGNLSGKFNTGE
IEN
>IL0060 Membrane associated protein containing LuxR-like DNA-binding HTH domain
MTIDRLLMVIFLLIAFANVSDVVADYHMQVATWHLAIEGITVVISIAAFI
VLWWRVLRRNQELKQVKVALSRHQQREKESTANHEPGKERDKSPDSYTAV
QSWFKQWKLSPSEQEVAVLLIKGLSFNEIAEVRSTKEKTVRQQASSVYAK
SGLSGRNQLSAWLIDALLY
>IL2084 Predicted transcriptional regulator, HTH-type
MDSDRVSSIIGQRVRQYRLNQDLTQEDLATLANVSLNAVKSAEGGKSTLP
TYVAILQALGHIDNLLAAFPDEGVSPVQLLKSSTKQKKRASGKTRVKPAD
NEELDW
>IL2485 Transcriptional regulator, AraC family
MSHNKFDIIPAASFSNIGLEMIPPFPGLSSWVQCLWVNNDLKNSSRHVEE
KLYPDAGSSLTFEIRNTRINARYFHHTRVVTHRWDTSTRHISVRFRPGGA
KALLGLDIDDSQNIEIDLFDTPVSQQLSLQPLMDMLPALSADQQVQAVQN
WLLTLSYRAQEPSRKWSTLLAHASADLIPPQQLALQNGFSRRTLERQLRK
YLGFTPNQLHGFAQIRAARQYLILTPDSLSDIALACGYFDQAHFTNAFRE
QTLETPLQYRQRKMSQISNR
>IL0081 Transcriptional regulator, MarR family
MADNNSNKALRLDNQLCFALYSTSLAMNKLYKPLLSKLDLTYPQYLILLL
LWERDGVTITEISRKLFQEKGALSPVIKRLEQRGLITRKRNIDDERQLHL
YLTEQGRQLEQSACDVPEQVFCATQLEPDEALALKHTLESLRAQLQDKPD
H
>IL1637 Transcriptional regulator, MerR family
MRIGQLADLLGIQTQTIRFYEKKGLLPLPARSYNGYRVYTEKHYKRLKFV
CSCRAIGLSLSETRRLQDYQDNPHQPCSAVNTLIDEHIMHIRSQITSLQD
LEKQLTSIRTSCTGQSKVIACTVLNKIDEIESVSCNRDV
>IL0357 Transcriptional regulator, MarR family
MTLTQEQLRQLSVPERLGRVARQWQAIADKELAPLGLTYPRWSAMWKLAR
IGDGVSQKQLAEALELELGSLMRTLAQLEEQELITRKASPDDGRAKQVFL
TNSGHALVKKMEAKILKVRRALLANIEDEEIETVKKVLAMISYNANHMSE
AQKLDQNNEEEV
>IL1522 Transcriptional regulator, MarR family
MEKYEELLLALRKVIRAIDLYSKQLNKYSGLTAPQLLILREINAANGITA
SKVAQNINLSPATVSNVIERLEHRQLIHRHRSEQDKRRVSLYLTEQGLTL
LEKAPQPLQEDFIEKFQALDEWEQSLLLSSMQRIANMMDAERLDAAPVLE
VGSYHKLDH
>IL1601 Transcriptional regulator, TetR family
MNQRTKTMAENRAKIISAARKAFAEKGYTSASMDELTAEVGLTRGALYHN
FGDKRGLLAAVVEQIDTEMALRAKEIGSQAENVWEGLLAEGEAYIRMALD
PEVQRIVLLDGPAVLGDPSQWPSQSNCLEATRQTVRELVAQGVMKQVDTE
AAARLLNGSALNAALWIAASSTPQEVTPKAIEAFRLLASGLKRLSPDFF
>IL1871 Predicted transcriptional regulator
MHCPFCGTQDTKVIDSRLVADGASVRRRRECNHCKERFTTFETAELVMPR
VIKTDGSREPFNEDKLRNGLLRALEKRPVSLELMEQAINKIKSSIRATGE
REISSNFVGSLVMENLKQIDKVAYVRFASVYRSFEDIREFGEEIARLND
>IL0071 Transcriptional regulator, TetR family
MQRTKKAATKRQHILETGYRLVLKKGFAAVGLQEILKSCGIPKGSFYHYF
PSKEAFGCELLKEYTNDYGCKFEQLLTASGSGRDNLMRYWDAWIADPDDP
TRGWAEECLVVKLAAEVADMSETMRQILDDGVQQLIVKIATLIENGRSDG
SLADGAPPLQLARMLYQMWMGAALLAKLSQDKEPLHEARNSTLLMLDCSD
TKA
>IL1428 Transcriptional regulator, GntR family
MQIVSPLERSAITSSDRVLFEIQRAIVEGDIAAGCKISEPELARRFNVSR
APLREALARLERCHLIERIPNAGARVVTLSLEGLISLYQIREELEGLACR
LAAEQMPDNEIDELRQLLDKHLQTQRVREGESYYQEAGDLDFHYRIILGS
KNQYLINMLCDELYYLVRMYRVQMGMNGPRVSRAFDEHKAIINAIANRDG
ELADLLMRRHIGASRKNIELRLQTEKETS
>IL1609 Transcriptional regulator, LysR family
MAISTRTRITLRAMEQFIAVAEELHFHRAAERLNMSQPPLTSAIRKLEDD
IGVTLIERGKRVLGLTPAGKNFIDEARETLRQAEQVVTATQDAAAGRTGL
VRLGYVGSSLYGRLPDVIRDFRQSHPDVRLELKEATTAAQVAALRNNALD
VGILIPPLVNAEDIEQIPFDSDRLCLAIPKEHPLNKRSNLTLTDLSEEPF
ILWPMVEGRGFHLQVIRLCANVGFVPTVTQEAHGMHAVLSLVSVGAGVSV
VPQSMSGFRGDQISYHPLTGSEPEFDLTLSHRHLSPSAKAFVRSIGVRSV
RSGQP
>IL2384 Transcriptional regulator, TetR family
MPRTPKFHRETALNNALKLFWRKGYHATSMKDIEEEMDMRPGSIYAAFGN
KEALFKETLEEYSSLAEEEFKQALAQKSSVLQGISLYLRNIAVMTATCAP
TQACMLVKTLLEFTPEDKAFSEPVQSYLEKFEQLFTEAFQQAQQRGEIGS
SQSPERLGLLLQTNIIGLRTMARREIPRQQLESLADDIIARIIPAS
>IL0465 Transcriptional regulator, LysR family
MNLSHLKMMITVANLGSLQKTAEQLNRTQSAVSMALKKLEENAGFALFNR
DGYRLELTEQGQHFLRQAEEVVRQQQRLQSLATQLKHGAEPLLTLCYDHT
CDSKLWVPSIQHIQQQYPTTELHVDGESQMRALKRIDNGSADLALCPWLP
LFRQYGDFETLPVAPFELTVVISTALMKEFGRMPQSRQDLLELPMLVPQN
LEIGINLDAVLRLPSQQRIRVNEVNTQFELLMAGFGWGIIPKHIALDALE
QGKLVEISIPGFVQQVRLEIHLVRSANRTLGPAANAIWESFA
>IL0296 Response regulator of the LytR/AlgR family
MRNHLTHSRLRVIIVEDEAPARSKLNTQLAQMEGVEIVAECADAPQAIHD
INSLKPDLVLLDIELGELSGFDVLEAMKHPCHVIFTTAYSQYAVKAFEKQ
ALDYLLKPFDLSRLRHALERVVLAQPQAAEPATVQFTAKVGDKIRILQSS
DIRFVRASQGLVVAQCLEREHHLDDSLESLLNQLPSSFLRVHRNSIVNTQ
HIHQIEKWQNGALLLRFEGVNDTITTSRRGAAVLRKYLNL
>IL1093 Transcriptional regulator, LysR family
MSVYRPKSTIEQWRILQAVVDCGGYAHAAEALNKSQSSLNHAVAKLQQVV
GVQLLEVRGRKAHLTAAGEVLLRRSRQLTNLTEEIEQLADNLEQGWEPEV
KLALEMVFDRSLLVPVLDEFQQLSRGSRLVISDTVLTGTMEQIQEQAADV
VISHHIPRGFIGEPIGQYSMDLVCHPEHPLAKLEQPINQNELSQYLQIVI
QDTGSQPVEDEGWLKAEQRWTVSHFDEALRLIRNGLGFCWLPGYIAQEDL
DSGRLAKIEVEGSSSRKGSLYMVLPKAELTGPCAKTLSELILKYQSR
>IL0592 Transcriptional regulator, Cro/CI family
MATTFRRFDAASYLNDAESVAAFVADALETEDAGYIANAIGIAARTKGMT
ELAQKTGLSREQLYRSFSEKGNPTLKSVLAVTKALGIKITAST
>IL0918 Transcriptional regulator, TetR family
MAARIPTQKKILNAAEMLFSRDGFEQTSLRQITQEAGVNLASVNYHFGSK
KALIQAVMARYLVVFMPVLEEQLKLAEQQSELKTEELFKRFKIPLAKLTE
VNKHGPDIFLRLLGFAYSEIQGHLRKYTQQEFGEVLQHLMALLKRANPHL
DEQQMFWRLHFILGAAVFAQVSGQALIEIAEAEFNQKVGAQDVIDHLIPF
VSGGLEEA
>IL0033 Cold shock protein
MSTTTGKVKFFNEAKGFGFIEQENGADVFVHFSAIQSDGFKTLAEGQQVS
FTVAQGPKGPQAENVVPM
>IL0628 Transcription elongation factor greA/greB family
MLFPLDNLMFSSVGDKAVLKRAFRFCKTSVCPSNPIFQEAGQQMLIDPVE
LSILLNRLEFSESKEALIEKRIRVGASAVLRNVKTMEQVKVRLVPPELAD
TDNYLVSFISPLGSTLLGLRVGDIATVIVKDISIKWEVLTVNQNRPASDN
A
>IL2079 Protein containing acetyltransferase (GNAT family) domain
MTTEQQQNLYNLHQLWRMQPYQEFTTNPGAKIYKLEQWPRRIWCEPGSYS
EAEKEQLVAELSAKASDSHILSMPEMLLPKAGTGLLLLPSELTPSFSQQM
MVKTLSASALSDPAPRLTLEPIEHNHAQQWANTTGACFGYEVESSSVQNL
LLGGACLYFIKYQGQVAGTAMTFIQEQQMGIHQVGVLDSYRGKGLARDAM
LLLEQYALDAGINTLQLQASAMGEPLYQSLGYCSLGAIHNFIKIDAI
>IL0484 Acetyltransferase, GNAT family
MSDIIYREITAADMAAVIDLANEVHGDNYLNEDSFQQYLAGGTAGNVQLN
WIALRGETPLGVRITLAPGQWPIDDFCTPDAWPIPAEKLCYFKCAAVSEK
ARGLGIGKELLFRSIETAKELGCRGGLAHIWMQSPNNSAYEYFTRCGGEM
IKQHEKRWYKASVEDGYYCPVCDGTCYCNAGEMLLKFDT
>IL1391 DNA-directed RNA polymerase specialized sigma subunit
MQMVSERTSQRGSMATTQTDAAEKAAELLAKIAENRNRAAFSELFRLFAP
KLQSYATRQFGNEQTAMDLVQETMTNVWHKAHLFKPDRGSPSTWIFTIAR
NIRFDLLRKNKKRKDDISADELWPILSEQNDSLDDGYALDHDVLMQEISF
YYAQLPDAQRVVIEKIYIEGKSQQEVSDALGVPLGTIKSRTRLALKKLKE
LIVDDD
>IL2193 Transcriptional regulator, LysR family
MRQHDLNRYTSEFTGSIQSLLTLVIDMVNLRSLDLNLLVILHALLEEQHV
TRAARRLALSQPATSNALDRCRHIFDDPLLERVAGEMRLTAKAQSLKEPL
SQALLAITAIVEIPKVELTQVRQTVRLIMADQPGLIVMTHLLTKLSTSAP
KVNLSLLPWRSSKDALHRLENGEADIAISTFPALPPKFYRQQIAYESYVV
AMRASHPAAQKFNADEWLAWPHIVVSGEGNARGSVEEVLAQQGKVRHVGA
VVPNFTMIDPLIKATDMIATTPMNCLSDPQGLAIFEPPIAVPGFSLHLAW
HARRDSDLVVKHVIETLQHLFQKEGIATSIQ
>IL2441 acrR, AcrAB operon repressor
MVRRTKEDAMETRAKLLDAAEALFSENGVTQTSMMQVAEKAGVTRGAIYH
HFENKMDLIESLMGRISLPIDEMREQIAESLEFDALEEVKARSKEFLARV
QNEPQVRSIASILLHKCEYIDEVNPIKLRHVSGRNECICEVEKLFESAIQ
KGQLSSKASPRVAVIGLFSLVDGLIYNWLLAPDYFPLVEYGNQAIDSYIN
GLAR
>IL0639 alpA, prophage CP4-57 regulatory protein-like protein
MRFLRINEVRERIGLGRTSIYKMVNEGTFPKPVRVLGKKVAWVDSEVDEW
MLERIAEQRSDTISAVNC
>IL0098 araC, AraC-type DNA-binding domain
MLGRARGLAINQWHVALPDDISPLPTWKKWVKKVSSRPICGLSIPAEQLQ
EHSPERNLAQYHQALSFCQMQHQTQARASVMLSVFKWLDYQLETGHDASL
TELAAEIGISLSSCKRLLASHGYSFQQIYDLVRLHKLLNLLQKHPYSNVE
LAQKLGYSNPNNFRRACKRWLGIVPEELRQQQSALFISNSAL
>IL0491 arcA, Response regulator (CheY,wHTH domains)
MNARILIVEDEVVTRQTLTRLFQQEGYEVFDAADGLQMENIMRQERVDVV
IMDVNLPGKNGLELAESLRESDNIGLIFLTGRDSEDDRLLALELGADDYL
IKPYNPKELTIRVRNLCRRIEASRSGSPVENNSVEFQFHGWRLNSDSRCL
YSPENQMFRLPKSEYRALEYFYLTRAAFLTVKHWLNVCWIANCVRMTVPL
TLPFVAFVGILSLTRKHRT
>IL0471 argR, Arginine repressor
MVQDTLLEAFKTLLREERYGSQGEIVNALKAEGFDNISQSKVSRMLSKQG
AVRTRNAKQEMVYCLPPDLAVPSTRAPLSQLVLDIQHNDVMVIIRTSPGA
AQLIARLLDSVGKKEGVLGTIAGDDTIFIAPLKVADIEFTLRKVRELFAN
QAVLPSS
>IL0694 asnC, Probable regulator for asnA, asnC and gidA, lpr family
MKKLPENYQIDDLDRSILRTLMEDARIPYAELAKRYKVSPATIHVRVEKM
KRAGIIEGTRLQVNAKRLGYDVCCFIGITLKSAGDYPAAIEKLEKLEEVI
EAYYTTGQYNVFIKIMTPSINELQHTLINRIQAIDEIQSTETLISLQQPI
NRDIQP
>IL2002 bvg, Predicted transcriptional regulator
MLLIDAGNTRSKFAWWDADTDKIEILGAIPHQSWLNDLSQPLKDLLLEVV
SSRQLEREQQAIGCSVAAVQVMDTLNSSLAELGIKVFWQKTRAQQAGVTN
GYTKEPERLGSDRWMALLGCHEQVKQNALIVDAGTALTIDWLMADGRHLG
GWIVPGRQLMLNALGQGTANLKGITVNDIERDGLAAGLDTFDGITQGAEA
ALTGAIAQAIQLSGRYFSDQPFDVVVTGGDGEHLMRTLSVEFCRYDDLLF
KGLRLCADNLNS
>IL2434 cpxR, Response regulator (CheY,wHTH domains)
MRHSVLLIDDDTEMSVMLTELFKRESVDLSVAEDGVTGLDKALNGDYELI
LLDVMLPGIDGMQLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDY
LPKPFNPRELIARVRALLRRTPNTTMQNESLNVCGIVLDPATTEVKCDDA
ELILTPTEFDILRCLMQQAGQMVSKDQLSVAALGRKMEPFDRSLDVHISN
IRKKFPAKPDRIQTIRGRGYRLIASL
>IL0676 cspD, Cold shock protein
MATGKVKWFNNSKGFGFIESEDREGDIFAHYSTIEMEGYRTLKAGQPVEF
ELEEGPKGLHANNIVPGAADK
>IL2493 cspE, Cold shock protein
MSEKITGSVKWFNEAKGFGFIERENGADVFAHFSAISSDGFKTLTEGQRV
EFAVTQGPKGPQAENIVAL
>IL1709 cysB, Probable positive transcriptional regulator for cysteine regulon
MKLQQLRYIVEVTNHNLNVSATAESLFTSQPGISKQVRMLEDELGVQIFG
RTGKHLTHITPAGKDIIAVAQQVLDNVQSIKTVAAEHTLPNQGKLNIATT
HTQARYALPSVIQRFIQQYPKVSLHMHQGSPEQISEAAAKGRADFAIATE
ALHLYHDLIMLPCYHWNRSIVVPKSHPLTQLSKLTIDDIAQFPLVTYVHG
FTGRSELDKAFADAGHEPKIVFTATDADVIKTYVRMGLGIGVLASMAYDP
KEDTDLVAIPAEHMFAHSTTKIGFRRGTFLRTYMYDFIENFAPHLTRDRV
QKATQLKSQDEIDKLFDSCSLPMR
>IL1413 dbpA, ATP-dependent RNA helicase
MPINTPENISDNTSETSPELLHFNQLNLPPALLTRLDEIGYQQMTPVQSL
SLPVILNNTDAVVRADTGSGKTTAFALTLLAKLEAKSFSPQALVLCPTRE
LAHQVADEVRKLAKSMLNIKILTLCGGEPSRIQTNSLEHGAHVLVGTPGR
VLDHLEQRNVDLSMLTTLVLDEADRMLEMGFQDSLNAIVKHIPKTRQTLL
FSATYPKNIAALAEQVTTKARNIEAIQEQAKPQIEQLFYAMNNEDSAQLV
MNLLGDHQPENCLVFCNTKNEVKDIFNTLRANKFSVLALHGELEQKDRDQ
AIIQFSNGSARVLIATDVASRGLDIAELDLVISVNMAHDLDTHTHRIGRT
GRAGKEGVAITLIAEKDDYKMRLLEDTFAEPIQVKPAPALSNNRPLKANM
STIQVSGGKKDKLRPGDIVGALTKDNVLSADDIGKIKLESTFGFVAVNSR
LAKHALGLINNNKIKGKKFRAKVL
>IL2528 dcm, DNA cytosine methylase
MSNIELKQLRERLCLTQSQAASLVHSSVRAWQQWESGERQMHPAIRELFT
IKTKTYQRESRTMSFAKPSVTFRDLKKNYQELAESTHRSEQANAKDSSIK
FIDLFAGVGGIRLAFEKAGAACVFSSEIDTHAQLTYFTNHGTVPYGDITK
IDADSIPSHDILCAGFPCQPFSHIGRREGFKHPTQGTMFHEIVRIAEKKR
PRVLFLENVPGIVNHDNGNTLKVILDTLTELGYECNHTILNASDFGVPQN
RKRFYLVAFDGKDCGFSFPQPPMIKADIGTLLEKGAEGYSISEHLQKTYL
FKKDDGRPILIDRNTKGPMRTLVSSYHKIQRLTGTFVKDGETGIRLLTAY
ECKKAMGFPDDFKFPVSRTQMYRQMGNSVVITVIDAIAEKILETLSHKKS
PTEKKSERDMPESNLEVAI
>IL1991 deaD, ATP-dependent RNA helicase
MSNTQTGLSFNDMALPSAVLEQLNAMQFLTPTPIQLQAIPALLEGQDVLG
EAQTGTGKTAAFGLPALAKIDASVKQTQVLVVTPTRELAIQVAEALEGFA
AKMRGVGVATVYGGAPFGPQVKALKQGTAIVVGTPGRLIDLLNKNVLQLD
GLKVGVLDEADEMLNMGFIEDIETILKAVPNTAQRALFSATMPNAIRKLA
KTFLKDPLNIQIEAIAREKATIKQKAWKVQGMTKMTALTRLLEVTPYQRA
LIFVRTRQDTMDVAELLQRNGFKAAPLSGDLNQAQREQTVSQLRSGHIEI
LVGTDVVARGLDVPEITHVINYDLPSDTESYVHRIGRTGRAGRTGEAILF
FRAKERHLLRHYERLTNAPVEFFEVPNANELSKYRQQQLLEKLQASLAPE
TASADKPKLEKLLGEWLEQSELSAEEIALALLAQHNEQRPLFLKEDRPVR
EARNERSERSGRNERSDRGDKRKPRAERGGRAADVDFETYKIQVGREHGA
RPGDIVGAIANEASMDSKYIGQIQLFDNHSLVQLPKGMPKDIMHVLKKAR
VRQQPMGLELSDEQVKRAPRPPRDRDARGGPKRNSGKGAARRFS
>IL1832 dinG, ATP-dependent DNA helicase
MATVLSVFKPTGELAQAITNFQPRAAQQQMAEAIAATVKKKGELVVEAET
GTGKTFAYLAPVLLGKGKAIVSTGTKNLQEQLFHRDLPMLRKVLAPEKVV
ALLKGRSNYLCLHRMEQATQQAGQFSKDIQNQLITVKRWATSTRSGDVGE
LNALAEDASVLPQVTSTQDNCLGRDCPVYEDCHLVKARKEAMEADIVVVN
HHLFFADMALKDTGFGELIPSVDTVVFDEAHQIPDIASQYFGETVSSRQL
TEMCEELQRLCMTELKDLSQASAMARTLLQTLKDWRLLFPRDPMRGNWRD
WRKKPDVAEVAERVQERLTLLTDVMKTAIGRNKDFDNLHERAEQHLYIWR
QLMDVDRTGYSFWFETTPRHVSLHQTPLSVAKTFGGYIKRNKMSWVFTSA
TLAVNGKFDYFTKRLGIDDADTLLLESPFDFAKQAKLCLPRYLPEANDPN
RHQMLTEIAEQCVKVNRGGTFLLFTSHRMLQQMASILRDRLDRDILVQGE
SGKTELLETFTKKGNAVLLGTSSFWEGVDVRGEALRCVIIDKLPFASPDD
PLLNARVEDARLRGVDAFSTIQLPQAIIALKQGAGRLIRDKDDSGVLIVC
DSRLVTRQYGKQFLSSLPAMSRTRDLNEALSFLAQVAEKDETNNDELISS
>IL0306 fadR_1, Transcriptional regulator, FadR family
MKSATRSRPQSIHSWVAQELGSRIVGGVYLPGQYIPNENDIGAELGVSRT
ALREAFKLLTAKGLIESRPKLGTRVRPRKNWNMFDAEVLRWCFSSNPDTK
FYMSLYEMREIIEPNAASLAAMHRTDEQLAALTEAYQAMEEAQIGTDAVY
KSDLEFHLALLEATNNEFMASLGVTIETALENSFRLSSAIAEEYVDSLPG
HKAVFMAIKEQSPVVAREEMQTLLVNARHALEHTLAELHKTPV
>IL1821 fadR_2, Negative regulator for fad regulon
MIIKAKSPAGFAEEYIVKSIWNGHFAPGTILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDEDGMPELVDQ
LLSARTNISAIYIRAAIRHNPKRVLELLEPTSELEDNKKTFAEFDYQLNH
DLAMASGNPIYVLVLNGFKGLYSRIGQYYFSSSEARQLARDYYENLIAVT
REGDYNESVNLVRRYGYESAEIWHSLRGDMPDDLVG
>IL2452 farR, Transcriptional regulator of succinylCoA synthetase operon
MNKFSKIKQHIYLKIESGEWPENHPVSSENALSAQFSVSRMTARRALQEL
ADEGLVIRTQGSGTYVAPIKSQTSFMAIRNIADEVRSRGHDYRAKVHMLK
EQPASTQVAEALELEEGSPVFHSLITHYENDLPVQLEERFVNPKLVPDYL
KQDYSKVTPHEYLCVVSPLTEASHQIEAILPVNTLCQYLSIDRHEPCLRI
LRRTWSSGGVVTFATLTHPGSRFKLGGHLTFKE
>IL1594 fecI, DNA-directed RNA polymerase specialized sigma subunit
MISVPRRERDPQNCHNDGVSLAISAKRQGAPAADMSNKTNNSKLYDCLSN
NAQLRRYLSGRTRCSEEAADIYQESVARVLEQSRKSTINNPIGYAIRVAR
NLLTARPVDCDDDIDNLDSPKANPEYLLEEAQRIELISQALENMPEQRRR
AFELRRLHGESRKAIAEQLGISMETVTRHITRALADIQRYIDSKTK
>IL2289 fis, Factor for inversion stimulation Fis, transcriptional activator
MFDQNPSRENVSPLTTIGNNAQPKPLRDSVKQALNSFLRQLDGQDPEELY
ELVLSEVEAPLLEEVMTYTRGNQTRAATMLGINRGTLRKKLKKYGMN
>IL1151 flgM, Negative regulator of flagellin synthesis
MSININNAGLKNANIDSKSSNRQVQSDAPAKPAAVSQKGGEAVSLTSEAQ
QLSGLQEKAMNSSGIDQAKVDKIKADIESGSYKINVEQLANKLAQFESDL
FSNGSNE
>IL1117 fliA, DNA-directed RNA polymerase specialized sigma 28 subunit
MNKAAVYAATADNRNAIIEQHTGLVKRIAHHMMARLPASVQVDDLIQAGM
IGLLEAARNFDNSKGASFETFAGIRIRGAMLDEIRRGDWAPRSVHRNHRR
VLEAIRQVENETGRDAKDTEVAAKLNMGMDEYHHILRDVSTGRIVGIEDL
GVSEDAIMPEQVTGSAYEPQKDVENAAFHKALVSTISSLPEREALVLSLY
YDEELNLKEIGEVLSVSESRVSQIHSQAMLRLKSRMQNWVE
>IL2593 glpR, Probable repressor of the glycerol-3-phosphate regulon
MSVVDLSQRFEVSEETIRRDIRQLETTGRVVKVHGGVRLSTSTLEPPYQG
RVSLNAAAKKEVGEKATELVEDGMTVFIDCGSTSYWFSRMLTKPKKLLVV
TNSLDVANEVIGRDDWRLAFTGGQIDPDYRAAFGREAIIQARQFTPDLLF
LSIGGIHSDIGLLDFSIDEANFKRSLLDRARRKVVLTDSSKFSGAGSVHL
ADFDQIDTIVCDKPPEDPLKSALDNAQVEVICSR
>IL0979 greA, Transcription elongation factor GreA
MNQIPMTEHGAQLLRDELKRLKTVERPRIVEAIADAREHGDLKENAEYHA
AREQQGFCEGRIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTD
EEVTYKIVGDDEADIKSNLISVNSPIARALIGKEIDDIATVTTPNGEVEY
EVVAVQYK
>IL0282 greB, GreB
MKTNLITLGGYEKLQQELEHLWRVERRETVEKVSWAASLGDRSENADYKY
NKQKLRKIDGRIRYLTKRLEQVKVVYYSPQQDGKVFFGAWVEIEDEEENV
RAFQIVGPDEIYDRKDAVSIDSPMARALLKKQVDDEAEVTTQQGTRTWFI
NKISYQQPA
>IL2223 hepA, Probable ATP-dependent RNA helicase HepA
MSEFRVGQRYLSETETELGLGMITQAEGRHLTVMFPATGEVRLYSAQEAP
LARYQLQVQQQGKHADGWSFTIQELTESQGIVTYHGLRDDNQESVVVPET
QLSHQVDSNPALTRLLAGQADRLDMYQLRCEASEHLAHHQASEVAGLLGV
RTHLLPHQLYIAKTVADRYHPRVLLADEVGLGKTIEAGMIIKRRLNTGRS
QRVLIVVPESLMHQWLVELRRRFALNFTLFDDERCEQAEADSENPFLTEQ
HIIISSRFMHESRWSESLLKAEFDLLVIDEAHHLQPEAPEFSAVKNLCEA
VPGLLLLTATPEQEGAEGHFQRLQLLDPDRFSDFASFQQEQTQYKELAEQ
AESVTDPAELDDLLDKHGTGRVMFRNRRADIGGFPERHFHPVELDECEPD
EDMPWWMEDPRIDWLLNHIKQNRSEKALLICKTAEQVLDLSEALRVLAGV
QAATFHEGMTLTERDRSAAFFASEEDGSPILLCSEIGSEGRNFQFVHQLI
LFDLPSNPDLLEQRIGRLDRIGQQQNIDIYLPYCKGSAEAILLPWYEQGM
NAFSQCNAIGRKLYDAFGTDIEQAVAEQEPLSDELLKQTKELHETWLERN
REGQDKLQALNACRPETAEKIIEQIHSDSDTDTLADFMIAFFDRFGVNNE
VLDEERWFIRPGEHMRVGSLPGLPDDGITITFDRVTALNFEDTDFLSWDH
PMVQAALELLTADDFGSTCVAELKNPAIPAGTWFLELDFASIVPAPKAAA
LQEFCPLQSLRLLFNGQGQELSAKVSRELLDQQSSFIDKKTARQILRQLR
DPAQKIIQSGQQQAREWQQKQLDKVKQNALDALQHERTRLLELRKKNPSV
RSSEIEAINWREEQITAALESPQLSLQAVRILVNNH
>IL0058 hipB, Transcriptional regulator, HipB ortholog
MKITDPKALSIYLRDERRRRGLSQAKVGDLVGLRQGTVSKFESMPEKMQL
DTLFRLLSALELELEVKPKGTVLKKNVDSSTPGDEWTEEW
>IL1660 kdpE, Response regulator (CheY, wHTH domains)
MNAQARTDGPRILVIDDEPQIRRFMRASLTAEGYTYLEAATAEQGIKQIT
SQNPHLVILDLGLPDADGYQVMRQLREWSQVPVLVLTARDDELQKVKLLE
GGANDYLTKPFGIRELMARIHVLLRDLSIEQPTAEAQLRFGELLIDREQH
KVFLQNEIVNLSRKEYALLDFLVSHPQKLVTQQQLLEKIWGQTHQEDTHY
LRIFVSQVRKKLKDDPAQPKYIETEPGVGYRFIAEKS
>IL1987 kdtA, 3-deoxy-D-manno-octulosonic-acid transferase
MQLWIYGVLIRLVTPAVFVWLWLRGGKDSRYRQNWSERLALGSVDKKQHG
CLVIHSVSVGETLAAKRLIEQLLRQEPGQKILITCMTPTARELIQQHFAD
TVSCRYWPIDSPGAAKRFVRKFKPKAVWVMETELWPQMLNQFSKANIPVA
LLNARLSARSAAGYRRFHWLMKKVWKQLTLVSVQNKETARRMKVLGVPDS
VLFVDGNLKYDIELSVTDIEKALLWRQSCASRHVWLASSSHPGEHELLLE
AHKLIQQDLSNSCLIIAPRHPEQFEVVAKMIRESGLKLARRSESNAIPED
CDVFLADSMGEMMLWGQLASASFVGGSIIERGGHNPLEVIAAGSNVMSGR
HVFNFPQVYGELAKAGAVQWVNNAGEIKQAVELMQQTAVMKAQHEAAKSV
LQTHQGATLRVLKRALEYTLTGSGMIKTEQSPQGLIRYDSDIFETIEDKH
FTAQYWQQQKSIAGNSTGRATVWFIQQGDLGLLLRHYYRGGLVGKINKDR
FLREPAEKSRAIHEFDLLLKLREIGLPVPRPVAARMEKTAVFSYKADILV
EVIPGAVDVFRLLREKKLSAELWQKLGSVIKELHDTGVYHSDLNCHNLML
DDKDKAWIVDFDKCDFRENGDWKEANIQRLLRSLRKEKEKNETFYWKESR
DWPELLTGYRR
>IL0262 lexA, SOS-response transcriptional repressor
MRPLTPRQSEILELIKDNLHATGMPPTRAEIAHKLGFRSANSAEEHLKAL
ARKGVIEILPGMSRGIRLVGDDYDIADGLPLIGQVAAGEPLLAEQHVEGH
YKIDESLFHPAASFLLKVNGMSMRDIGILDGDLLAVHKTEQARNGQIVVA
RVEDEVTVKRFEQRGKTILLHPENEDFSTITVNLAEQVFAIEGLAVGVIR
NGATL
>IL0668 lrp, Lrp
MFNAEQPAEVTIDKTDRKILRLLQDDGRMSNVELARRVGLSQTACLERVR
KLEREQVIESYHARINPAKLGANLMVFVEITLTRTSADAFAEFSEAARKT
DEILECHLVAGDFDFLIKARVPDMRAYRKLLGETLLMMPGVDESRTYVVM
EEVKQENKVLVKG
>IL1643 merR, Transcriptional regulator MerR
MLKKRNVMTIGTLAKTAGVGVETVRYYQRRGLMSEPEKPYGGIRHYDEQA
LARLHFIRASQWLGFSLDEIGELLTLQDGAHCDEARELGEQKLTSVRRKI
SHLQQIERALNELVQKCSAGHGDVYCPLMASLNDGVEDATTDKHKVR
>IL2465 metJ, Transcriptional regulator of met regulon (repressor)
MKWNGEYIYPYAEHGRKSQQVKKVTVSIPTRVLKVLTDERTRRQINNLRH
ATNSELLCEAFLHAFTGQPLPEDEDLQKSNPNKIPKAVREELEARGLPIP
TDEELDD
>IL1520 mfd, Transcription-repair coupling factor, superfamily II helicase
MTKASVLRPPFPPAANKDLTWQELHGSSPAMAIARLIDATPGRVLIVTAD
ANQAHRLEQEVKYFAGEHTEYHDDITLFPDWETLPYDSFSPHQDIISDRL
SVLARLPDAKRGALIVSINTLLHRIAPTSFVQGQALQIEKGQQLDSLKLR
QQLENAGYRHVNQVMEHGEFSARGSILDLYPMGSQTPYRLDFFDDEVDTI
RPFDPETQLSKDPIDGINLLPAHEFPLTKTAIERFRANYREHFEASTERE
SVYQQVSKGQLPGGIEYYLPLFFEETASLFDYLPEDTVLVTFGNIQASLE
RLWQDINHRYDQRQFDPLRPLLHPNELFLPVDNIHAGFKQYRRVRANVPA
EMAQPGPTPFLTQAVTEIAADHQQKQPFAKLKTKLEQALTTGDKVLLSAE
SAGRREALREIVSKLGFQVRLCSGLDECPTQQIGLIISPIINSFYLPDAK
LWFITETELFGNRVVQSRRRQQKATVSADTLIRNLAELQAGQPVVHLDHG
VGRYQGLTTLDAGNVTTEFVTIEYAGGAKLYVPVANLNVLSRYSGGEESH
APLNKLGNDSWDKAKKRAAEKVRDVAAELLDIYARREAKPGYAFNINEED
YQRFAAGFPFEETIDQQTAIDAVKQDMQQPRAMDRLVCGDVGFGKTEVAM
RAAFIAVNEGKQVMVLVPTTLLAQQHYENFSDRFADQAIRVEVLSRFKTA
KQSKGILEDLSNGKVDIVIGTHKLLQDNVKCHDLGLLIVDEEHRFGVRQK
DTIKRLRADVDILTLTATPIPRTLNMAMNNIRDLSIIATPPAKRLAVKTF
VREYDEPTVREAILREILRGGQVYFLHNNVDTIEKTAADIEALVPEARVV
VAHGQMRERDLERIMSDFYHQRFNVLVCTTIIETGIDIPSANTIIMDRAD
HLGLAQMHQLRGRVGRSHHQAYAYLLTPHPKRMTKDAHKRLEAISQLEDL
GAGFMLATHDLEIRGAGELLGDDQSGQIESIGFTLYMDMLEQAVKALKEG
KEPALAQLLHERAEIDLKLPALLPEAYIPDVNNRLSLYKRIANCETSKEL
DDLQVELIDRFGLLPDAAKNLIRQTQLRNNAEQLGIRKIDIGNQGGIIEF
ADDTKINPEIIIGLIQKAPSYYKLDGPNRLRLSQPLEDTQSRLKLVESLL
DEFAEQSQAA
>IL0182 narL, Nitrate/nitrite response regulator (CheY, HTH domain)
MTTEAASIMLVDDHPLLRKGLKQLIAMEDDMTVVAEASNGPDALLLAVEH
DPDLIVLDLNMQGMDGIETLKRLRDSGVTSRIIMLTVSDADDDVVAAITN
GADGYLLKDMEPELLLEQIHRAVTGKMVLSEAITEILATALRQPTQSTTS
QLSNLTNREHEILSLIAKGMSNKVIARELDISDGTVKVHVKHLLKKLGLR
SRVEAAVWMVNLQGNKAPQ
>IL0523 nhaR, Possible transcriptional activator of LysR family
MNYKHLYYFWHVAENGHLTQTAQKLHVSQSALSAQIKQLEEWLGTPLFER
TGRKLVLTQAGYIARQYADRIFHEGENLVNQLKQGMDGSDLVVRIGHAST
MSRNFVEAFIHELVHQQDVQYRLHSMTPDQLFNELADHQIDIALANTSVR
GSDKQLWQSRLLARQPVSVIGPPGRDIEQLTDVALRNNNWVLPPENMPLR
AAFDMLSAEYNWQPRVLAEADDMAMLRLLARDTGALAVIPDVVVRDELTS
GQLKRYLTLPNVFEHFYAITLKRPFEHPMVAKLLQRFV
>IL0196 norR, Nitric oxide reductase regulator
MLQESLLADLLTEQPAAVRLQNLVNTLRSHFNCGAVVLLKLDNEVLQPVA
IQGLVREALGRRFVVAQHPRLAALLASRNPVRFEHDSSLPDPYDGLLAEQ
PGNALPVHDCMGISLYLENKCWGVLTLDALQPGTFTDNSMIELQKFSLFV
ETAVRIGQLEQNVRALRQGQQRTMPKSGTTERNESEIIGHSKAIESVLKE
LRVVASADLPVLLLGETGVGKELFARELHILSQRSDKPLIYVNCAALPES
LAESELFGHVKGAFSGATSDRSGRFEVAHGGTLFLDEVGELPLSIQAKLL
RVLQNGEIQRLGSDKYRKVDVRLIAATNRNLRQQVSNETFRADLYHRLSV
YPLPIPPLRERGDDVSILAGHFLELNRARLGLRALRLSPEAELAIQQYQW
PGNVRELEHVISRAAIKLLSHGVEKTDIATIEPDMLDLDVQLPFSATTDS
GKNSVGASLPPANVSMKEAVNYTQRKMIESALGRHNNSWSQAAKDLQLDA
SNLHKMASRLGMKS
>IL0969 nusA, Transcription elongation factor NusA
MSKEILLVAEAVSNEKAVPREKIFEALESALAHATKKKYDGDIEVRIDID
RTTGEFDTFRRWLVVEDTDSGLEHPYREISLSAAQYEDPSVQAGDYVEEQ
IDSIQFDRITTQTAKQVIVQKVREAERAQVVDEYREQVGEMVSGIVKRAN
REHVILDLGNNAEAIIYRDEMLPRESVRPGDRIRGLLYDVRPEARGAQLF
VSRTNPNFLLELFRIEVPEIGEEMIELRGAARDPGSRAKIAVKSNDKRID
PVGACVGMRGARVQAVSGELGGERVDIVLWDDNPAQYVINAMAPAEVASI
VVDEDAHTMDIAVAADNLAQAIGKGGQNVRLASQLTGWTLNVMTEDEFNE
KNEAETQRLLNLFVSTLDIDEDFANVLVDEGFSSLEEVAYVPVAEFLDIE
GMDEDIVEELRSRARAYLTTKALATEESLESAEPDDTLLNLEGMERHLAY
VLASKGVTTLEELAEQGVDDLADIEELNEQQAGDLIMKARNICWFNEEQ
>IL2141 nusB, Transcription termination factor NusB
MKPAARRKARKLAVQAIYSWQLSQNSFSDIEAQFLTENDTSKVDVDYFLE
LVRGVGGHYRTLDEALEPFLDRPIKELDPIELAVLRLAAYELRERVDVPY
KVAINEAIELAKSFGADESHRFVNGVLDKAVDTFRPTRQ
>IL0340 nusG, Transcription antiterminator NusG
MSDKKRWYVVQAFSGYEARVSESLKEHIKMHGMEDKFGEILVPKEEVVEM
RGGVRRKSERKFFPGYVLVEMDMDEDAWHLIKSVPRVLGFIGGSSDRPTP
ISKKEADAILDRLQDSADKPKPKTLFEPGEVVRVNDGPFADFNGTVEEVD
YEKSRVTVSVSIFGRATPVELEFGQIEKA
>IL0320 ompR, Response regulator (CheY, wHTH domains)
MMQETLKILVVDDDARLRSLLERYLTEQNFQVRVAQDSEQMDRLLTRENF
NLLVLDLMLPGEDGLSICKRLRSQGNNLPVIMLTAKGDEVDRIIGLELGA
DDYLAKPFNPRELLARVRAVLRRRGTEAPGAPSQEDQEITFGEFRLNLGT
REMFRGDTPMPLTSGEFAVLKALVNNARQPLSRDKLMHLARGRDYSALER
SIDVQVSRLRRMLEVDPTKPRYIQTVWGLGYVFVPDGQLKS
>IL2577 oxyR, Transcriptional regulator of lysR family
MSKLPSLKNLSYLLALHQEQNFNRAAAECNVSQSTLSSGIQNLEEQLDCQ
LIERDHKSFLFTALGEEIVEKARDIISASEELLHYAQGQGNIMEGPLRLG
IIPTIAPFVIGELSKNLQNKFPKLLLQLSEDTTQNLLHRLRNGELDILLL
ALPMDIQGNQKWVLGRDPFKLVVHKELAETIGEPVDYDKLPDRSIFLLEK
EHCMTGHAVAACQLTDSIKMNPFTATSLHSLVQMADARLGATFIPQMAID
QGILENTDLVSLKPTGQEASRDIGLVYRPTTSRRQTFRKIAEEVARLLPV
NTLN
>IL2627 parB, Chromosome partitioning protein ParB
MSAKKRGLGRGLDALLTSNQQNSDRQSEQVTEEVKGELQKLPVEFLKPGR
YQPRKDMSPEALEDLAASVKAQGIIQPIVVRPVGKDEYEIIAGERRWRAA
QLAKLELVPCLIKDVPDEAAVAIALIENIQREDLNAMEEATALQRLLVEF
QMTHQDVAQAVGKSRTTVTNLLRLNNLQDGVKVLLERGDIELGHAKLLLA
LEGEQQADVAQQIVAKDMTVRDAEKLVRRTIDPPKETEKPEPDANIEHLE
TKLSETLGAKVSINHGRKGKGKLVISYTNLDELDGILTHIK
>IL0457 pdhR, Probable transcriptional regulator for pyruvate dehydrogenase complex
MIVDGRLSAGQKLPAERQLAQQFNVSRPSLREAIQKLEAKGVVERRQGGG
TYVVNSINEQLTEPLFELLAKHPESQFDLLEFRHALEGISSFYAALRGTE
ADLDRISESIKDLENSRANSIDDQVNAIVEFYHRIAEASHNVILLHVIHG
MQELLAENIRQNLEILAGRDDLLGKLNQHRQQLVSAIVAGKPEQARDACH
QHLAYIEQTLLNLGKEQSRIQRSLRRS
>IL2111 phoB, Positive response regulator for pho regulon (CheY-wHTH)
MSRRILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMV
LLDWMLPGGSGLQLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGAD
DYITKPFSPKELMARMRAVFRRVAPTVLDEPLEVEGLKLDPVSHRISVDD
KGIDMGPTEFKLLHFFMTHPERVYSREQLLDHVWGTNVYVEDRTVDVHIR
RLRKALTEHGYDRLIQTVRGVGYRFSSR
>IL0731 pspA, Phage shock protein A
MGIFSRFSDIVNSNINSLLDKAEDPQKMVRLIIQEMEDTLVEVRSTSARL
LAEKKDIQRQQQRMENEVQDWENKAELALTKERDDLARQALIEKQKAQQG
VDSLQQEMDRVNENLDKLNDEIGQLQEKLADAKSRQKAILMRQKAASSRL
QVKQQVDSGKVDDAMQRFDRYEAKIDDLEAQVESYDMGKRTLRDEFAELE
NESKVNDELEALRARMSSKTKQDS
>IL0729 pspC, Putative stress-responsive transcriptional regulator
MSERRPKRELRRDSERGKIAGVCAGIADYLNLEPWLIRVAFVTGVIFTNG
SFFVLYIAGWLILDKKLPNTERHNVDVKTKVWQGGEPPREAFRDIKREFD
ELEQQLQSMEKYVTSSHYNLQREFNRL
>IL0732 pspF, Transcriptional regulator, AtoC family (AAA,HTH domains)
MRPERKPDNLIGQSNSFSDVLEQVSQIAPLDKPVLIIGERGTGKELIAAR
CHYLSRRWQQQYVTLNCAALNENLLDSELFGHEAGAFTGAAKKHEGRFER
ADSGSLFLDELANTSLRVQEKLLRVIEYGEFERVGGRHSVKVDTRLIAAT
NEDLPSLAAKGQFRSDLLDRLAFDVITLPPLRERRDDIMLLAEHFAISMA
REMELELFSGFSEKARKTLLEYHWPGNVRELKNTVERSLYRLGNGHVPIH
DIIIDPFNSPFRPKTPVTEKAVPQEPVANEQSNAESNELIDMPKLNAEQP
IDFKQKSQEYEIDVLSQALRLCQFNQKKTANFLGLTYHQLRGYLKKYQLL
EGASAAND
>IL0095 qseB_1, Response regulator (CheY,wHTH domains)
MELLLVEDDAMLGQAVELGLSERQFLVQRVRTGAAAISELNRTHYDAVVL
DLGLPDLDGTRVLASLRKKGMTLPVLVLTARDQSSEIVKQLDNGADDYMI
KPFDMNELAARLRALVRRQRGYASPELKVGDIVLDDANHSVVVEGLAVNL
SRREFELLKALMSAPERVHSRDKLEQVVFQNEAQVESNALEVHVHNLRKK
LGHKEWIQTIRGIGYRLQCN
>IL2374 recG, DNA helicase RecJ
MAVKGLQHIPLTVLKGVGEKVAVKLRKLGLASVSDALLHLPLRYEDRTQV
TDVANLRAGVATNVLVTVRHADIKYGRKRMLICQASDETGSISLRFFQFS
AAQLKQFAQGTQLLAFGEVRRGMTGWEMVHPEYRMVKAGEPLNMQETLTP
VYPMTEGVTQGILRKIIEQALTYLQPGSLPELLPENLRPHQLSLEQAILT
LHRPPVDVPLALLEQGEHPAQQRLASEELIAHQLSLLQLRQARQAQAGFT
IKGNGALQEAFLKQLPFSPTGAQTRVVKEITSDMAQGQPMMRLVQGDVGS
GKTLVAALSALAAIEAGYQVALMAPTELLSEQHAITFSQWLMPLGINVAW
LSGKSKGKSRRELLAQLKQGDIHLLVGTHALFQADVEYRRLALVIIDEQH
RFGVHQRLQLREKGVQAGVHPHQLIMTATPIPRTLAMTAYADLATSVIDE
LPPGRTPVTTVAIPDTRREQIVERVREVCATEGRQAYWVCTLIEESDVLE
CQAAEDTANDLQEQLPGLSIGLVHGRLKHEQKEQVMQAFKAGDIDLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHS
PLSQTAQQRLGVLRESNDGFVIAQRDLEIRGPGELLGHRQTGLAELKVAD
LERDEALIPEAQNIAQHVLEHYPQSAEALIERWLPRRDHYAQV
>IL0804 relA, (p)ppGpp synthetase II
MVHVRSTHVDDPKYKDSEQHWLNAVSDPEPLESTFQQLKQQFPEEAEALL
KGQEMVEILAPLKLDAESLLAALYVPLLEAGKLDLDKITGKQSKTLIVLL
RNVQQMQSIGDLQHFQHGQPDGSQIDNVRRMLLSMVEDVRAVLIKLAERI
CYLREVKKADEETRVLAAKECAEIYAPLANRLGIGQLKWELEDISFRYLH
PKTYKTIAQRLDERRTDRELYIDNFVSGLQESLQQQGIDADVYGRPKHIY
SIWRKMQKKHLQFDQLFDIRAVRILTHNLKDCYAALGVVHSSWRHIASEF
DDYVATPKPNGYQSIHTVVIGPEHKNVEIQIRSHDMHDDAELGVAAHWMY
KEGAAAGKRHGFEDKIAWLRKLLAWHEDMAGSETLVDEIRSQVFEDRVYV
FTPKGEVVDLPMGSTPLDFAYYIHSQVGHKCIGAKIDSRIVPFTYQLQNG
DRVEILTQKNAQPRRDWLNPQLGYLHSSRARAKVHTYFKKEDREKNLQAG
KELLENELQKYQLHVQDANKAVERFNVPTLDDLLAAIGAGDVRLHQVVNF
LKPQETEADKVERLTKRRKAKQSPKTPKSDVTVEGIGNLMMHFANCCEPL
PGEPITGFITQGRGVSVHHSDCDQLKHLLHQHPERGIEVSWSGHSKQEYR
ASLRVSALDRNGLLHDITSVLSNEKAAVAQMDSESDAKSQSATVVLTLTV
KDSDALSRITDRLRQVHGVEQVQRITLKL
>IL0590 rfaH, Transcription antiterminator RfaH
MNELESDVWYIVRTKPKQEERAILNLENQGFGVFAPELTVKKVRRGVRTS
VVERMFPGYVFVKPDDIIEQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQ
MRGVDQLTDEQAPQIGDTVEIQQGPFRGFLAKIVKLDGESRCFVMLEWMQ
KEVKANFSYKELQFQ
>IL2484 rhaR, Positive regulator for rhaRS operon, AraC family
MLLIDAFIRFSALGLLLLMTVLVIKDLPRSRRCTLMVATNLCLASFLLGS
MPAEFALPMVWQVPFRLLDTLLLPVTWVFVLTLFHRDFRPGKLHWLALIA
VSASMLAERAVWLGWLNELPAWWPIVVITLSLFLVAHMVFVTLIGRNDDL
IEARRTYRLYFLFIISASVLVAVLVGSVWLQSAQSTINALSVWLPIFSMS
LWVLKGDTSALTFYRNASQKKQLSAVDKRILAELDKLMTQDKMYLEEALT
IADLAKKLGVAEHKLRTLINTQTGFTNFSHYINSFRLKGVMDCFSEREND
HLPILTIALNNGFNSLPPFNRAFKKETGMTPSQFRKNLQNFQN
>IL2363 rhlB, ATP-dependent RNA helicase
MTKKHLTETRFADLALHPKIQQAISSAGFEYCTPIQALSLPVALSNRDVA
GQAQTGTGKTLAFLLATFNRLMQNESSEKTESGPRALIMAPTRELAIQIA
HDADALIEHCGLKMGVIYGGEGYEGQKEQLAAQPDILVGTTGRLIDFYKQ
DLFSLKDIEVVVLDEADRMFDLGFIDDIRYLLQKMPDPSKRLNLLFSATL
SYRVQELAYEHMNAPTKLEVEPLQKTATRVTEELFYPSKPEKFPLLLTLI
EEDWPDKAIVFANTKHGCEKVHGWLVANEHRAGLLTGDVPQKKRLRILED
FAEGKLDFLVATDVAARGLHIPEVTHVYNFDLPDDCEDYVHRIGRTGRAG
ASGAAISLACEEYVYNLPAIEDYIGHTIPVTKYDGDALLSDLRRPRPIQR
RRRHNSGGGKGKPRGRRSGPPRNAS
>IL1546 rhlE, ATP-dependent RNA helicase
MSTEQNPSSFQSLGLSDDILRAVTECGYTTPTPIQQQAIPTVMAGHDLLA
AAQTGTGKTAGFTLPLLHKLSQTKTDGKPVIKALILTPTRELAAQVEDNL
NTYAKYTGLKSLVIFGGVGINPQISALRRGVDILVATPGRLLDHSRQGTV
DLSKIDVLILDEADRMLDMGFIHDIKKVMKLIPEKRQTLLFSATFSSEIK
ALSQQFMQQPKLIEVARQNAAADTIEQRVYPVDKKRKRELLSYLIGSRNW
RQVLVFTRTKHGANRLATQLTDDGLPAMAIHGNKSQGARTKALAQFKAGK
LRVLVATDIAARGIDIDELPHVINFELPQVAEDYVHRIGRTGRAGSEGEA
ASLVCVDEHKLLRDIEKLTKNEIPREVIPGFEPDPSIKPEPIQKPRTGRP
QNSRRAPRQKRPDTRR
>IL2361 rho, Transcription termination factor rho
MNLTELKDKPVNELVQLADSMGLENMARLRKQDIIFAILKAHAKSGEDIH
GGGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIGGK
IRPPKDSERYFALLKIREVNFDKPENSRNKILFENLTPLHAEERFHLERG
NGSKEDITARVLDLSAPIGKGQRGLIVAPPKAGKTLLLQNIATSIAANHP
DAELIVLLIDERPEEVTEMHRLVHGEVVASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKLA
ERRVFPAIDFNRSGTRREELLTTPDELQKMWILRKIMHPMGEVEAMEFLI
DRLQMTKTNDEFFESMKRQRNS
>IL0810 rnc, Rnase III, dsRNA-specific ribonuclease
MSLPKPPLTELEKIVGYSFEQQGLLHQAMTHRSASSTHNERLEFLGDSIL
GLVIAEALYQKFPKVAEGDLSRMRAAIVCGRSLAKLGKKMGLGDFLSLGQ
GELKSGGYRRESILADAVEAIIGAIYLDSDMDTIRQVILNWFEPQLTLIE
PGTSQKDPKTRLQELLQARQKPLPEYDVVATQGQAHNQQFTVNCSVEGIE
SPFKGTGTSRRKAEQAAATAALEHLQESA
>IL0629 rnk, Transcription elongation factor family protein
MGENMNTRPNIVISCVDMAVIEHHLDETRLPREFLDELEVELARAKIVEP
NVMPANVACLNRQVTFKVLETGKVFTKTLTAPDQVDKYDDSLSVFAPLGA
ALIGLSVGQSIQWKTNRGLQSVEIVHVAS
>IL1891 rpoA, DNA-directed RNA polymerase alpha subunit
MQGSVTEFLKPRLVDIEQISPTHAKVTLEPLERGFGYTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSSKEGVQEDVIEVLLNLKGLAVSVEGKDEATL
TLNKSGAGPVTAGDFTHDGDVEIVNPEHVICHLTGDYELVMRVKVERGRG
YVPAASRQSADDDERPIGRLLVDASFSPVERIAYSVDAARVEQRTDLDKL
VIEMETNGTLDPEEAIRRAATILAEQLDAFVELRDISEPEEKEEKPEFDP
ILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLIDND
>IL0345 rpoB, DNA-directed RNA polymerase beta subunit
MAYSYSEKKRIRKDFGKRPQVLEVPYLLSMQLDSFKKFIEVDPEANNGLE
AAFRSVFPIASYSGTAELQYVSYHMGEPAFDVEECQIRGITYSAPLRVKL
RLVLFDKEAAAGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLH
RSPGVFFDHDKGKSHSSGKVLYNARVIPYRGSWLDFEFDPKDNVFVRIDR
RRKLPASIILRALEYSTEEILDMFFDTTYFEILKTKVKMQLVPERLRGET
AKFDIKGAEGEVLVEKGRRITARHIRQLEQLDIKEMEVPAEYMVGKVLAK
DYANKKTGEVVGHANDVLTLELIAELSEAGIKKIETLFVNDLDHGPYMSE
TLRVDSSNNRLEALVEIYRMMRPGEPPTREAAETLFDNLFFSEERYDLST
VGRMKFNRRLGREDLSGDNTLSREDIVEVMKKLIEIRNGLDEVDDIDHLG
NRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNTMPQDLINAKPIS
AAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRD
VHPTHYGRLCPIETPEGPNIGLINSLSTFSRTNEYGFLETPYRRIENGSV
TDDVDYLSAIEEGNYVIAQANVGLNDKGELTEDLVPCRHKNEFTLMSKEQ
VQYMDVAPQQIVSIAASMIPFLEHDDANRALMGSNMQRQAVPTLRADKPL
VGTGIERTIAVDSGVTVVAKRGGVVDYVDASRIVVKVNEEEMVPGEAGID
IYNLTKYTRSNQNTCINQKPTVNPGEPVTRGDVLADGPSTDLGELALGQN
MRVAFMPWNGYNFEDSILISERVAQEDRMTTIHIQELNCVARDTKLGAEE
ITSDIPNVGESALGKLDESGVVYVGAEVNGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGVNGTVIDVQVFTRDGVEKDKRAVAIE
EMQLAKVKKDLTEEFKILEEGIYNRARNLLLSNGFDEAKLASVDRSSWLT
QDLGNEDAQAQLEQIAEQYQQIRDDFDTKFETKRRKITQGDDLAPGVLKI
VKVYLAVRRSIQPGDKLAGRHGNKGVISTIIPVEDMPHDDEGNPVDIVLN
PLGVPSRMNIGQILETHLGMAARGIGSKIEKMLKQQRAISELRDFLQQVY
DLGESRQKVDITEFTDDEVMRLAGNLKAGLPTATPVFDGAVEEEIKALLK
LADLPESGQIRLFDGRTGDKFERDVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDNNLQMEAGMPESFNVLLKEIRSLGINIELEQN
>IL0346 rpoC, DNA-directed RNA polymerase beta' subunit
MKDLLKLLKPTNQAEEFDGIRIALSSPDMIRSWSYGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRE
RMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDIERVLYFESYVVTEGG
LTSLEQGQILTEDEYLDALEEHGDEFDAKMGAEAVLDLLRAVDIDGDVQK
LREELPETNSETKRKKISKRLKLLEAFQVSNNKPEWMILKVLPILPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPKLRLHQCGLPKKMALELFKPFIYGKLERRGLATTIKAAKKM
VERETAEVWDVLDEVIKEHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHLPLTLEAQLEARALMMSTNNVLSPASGDPII
VPSQDVVLGLYYMTKEKINGKGEGMVFKDPNEAEKAYRTGQVELHSRVRV
RITDTTIDDDGNRTTKTELRDTTCGRAILSLIMPEGLPFELINQAMGKKP
IGRMLNKAYRDLGLKDTVVFADQIMYTGFHYAMVSGASVGINDMVIPEAK
KEIVSAAEEEVAEIQEQFESGLVTAGEKYNKVIDIWSTANEKVSKAMMDN
LSKEIVKNKDGEDEEQASFNSVFMMADSGARGSPAQIRQLAGMRGLMAKP
DGSIIETPIVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVSQDVVIMEEDCGTYEGLYMKPLIEGGDVVEPLRERVLGRVLCEPVMK
PGSEEELLPRNTLLDEKMCDVLEENSIDEVKVRSVITCDTDFGVCAHCYG
RDLARGHMVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAENNI
QVKNPGTIKLHNAKWVVNSDKAHVITSRSTELTLTDEYGRERERYKVPYG
AVLKKGEGDSVDGGETVANWDPHTHPIITEVEGRIKFVDLIDGVTMTRQT
DELTGLSSIVVLETGQRTSAGKDMRPMVKLVDGKGNDVNIAGTDIPAQYF
LPGNAIINLEDNSEVKIGDTLARIPQEGSKTRDITGGLPRVADLFEARKP
KEPAILAEKTGTVSFGKETKGKRRLLITPTDGGDQHEEMIPKWRQLNVFE
GEQVTKGEVIADGPEAPHDILRLRGVSAVANYIVNEVQEVYRLQGVKIND
KHIETIVRQMLRKALILRAGDTNLLEGEMVEMSEVLAANAKAEADGKKPA
IFERQLLGITKASLSTESFISAASFQETTRVLTEAAVGGKKDSLRGLKEN
VIVGRLIPAGTGYSYHKERMQRRLDELNVDIEPTMTAEQAEQQLADALNA
GNSSAGDDSAE
>IL2200 rpoD, DNA-directed RNA polymerase sigma 70 subunit
MQQNRQSQLKVLIAKGKEQGFLTFAEVNDHLPQEIVDSDQVEDIIRMIND
MGIRVFESAPDADDLMMAESAADEDAAEEAAQALASVDGEIGRTTDPVRM
YMREMGTVELLTREGEIDIAKRIEEGINQVQCSVAEYPEAINFLLEQWDS
YEAEELRLTDIISGFIDPDEVDEAPVAATNVGSELPSEELEKSDDDDDED
EEEADTGIDPEFARSKFNALREQYEATRQAIAKHGRDGAGARVEIDKLSD
LFKQFRLVPKQFDRLVKDMRAMMQRVRVQERIIMKISVEQGEMPKRNFMK
AFATHENNMAWVDKEIDSGASYSDTLKEVRGEIERCVNKLVDVERETGLT
IGKVKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDL
IQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
HMIETINKLNRISRQMLQEMGREPLPEELAERMMMPEDKIRKVLKIAKEP
ISMETPIGDDEDSHLGDFIEDNTLDLPIDSATSESLRNSVRDVLGGLTAR
EAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS
EQLKSFLDE
>IL0816 rpoE, DNA-directed RNA polymerase specialized sigma E subunit
MSEQVSDQQLVERVQQGDNRAFDLLVKKYQHKVMSLISRYVKQQGDVADV
AQEAFIKAYRALPNFRGDSAFYTWLYRIAVNTAKNYLVSQGRKPPASDID
AEDAEFYEGAGALRDSASPERQMLSDEIRDVVLKTIDELPDDLRRAITLR
EIEGLGYEEIALEMDCPIGTVRSRIFRAREAIDNQLRPLLER
>IL0229 rpoH, DNA-directed RNA polymerase sigma 32 subunit
MSTELNTMALSVPQGAGLDGYIQSVNRIPMLTAEKEKALATRLYENSDLD
AAKELIMSHLRFVVHVARSYSGYGLPQADLIQEGNIGLMKAVKRFDPSVG
VRLVSFAVHWIKAEIHEYVLRNWRVVKVATTKAQRKLFFNLRKMKKRLGW
FSQKEVETVANELGVSTKEVLEMETRMSAHDQAFELSSDDDDSKEGSAYS
PAMYLEDKRSDLAAEIEAKDYENHTQQKLLGAMSHLDERSQDIVQSRWLS
EDKTTLHDLAEKYEVSAERVRQLEQNAMKKLRLAMS
>IL0396 rpoN, DNA-directed RNA polymerase specialized sigma 54/60 subunit
MKQSLQLKIGQHLTMTPQLQQAIRLLQLSSLDLQSEIQDALDSNPLLEVE
GETSNDADQPETRNIEERDDSQRETSDVIKTQEMPDELPVDSSWDDTYSS
HTPANGAASSGKSFDGDFEVYQGSTSESLQDHLLWQMQLSHFSEEDTAIA
EAIIEAIDDNGYLMVDVNEIIEAVRLPEVEVEEVCMVLKRIQHFDPIGVG
ARSVSECLAIQLRQLSDDTEYKQVALCLVTEHMDLLGSRDFRTIQRKLKL
SEDDLRQTMRLIQQLHPHPGEQVAQQPVEYVIPDVAVTKKNGRWMVELNP
DSVPKLKVNEEYAALSKATKSVADSQYIKNHTQEARWFIKSLESRNDTLL
KVANCIVQRQQGFFEHGEEAMKPMVLNDVAEAVDMHESTISRVTTQKYLH
CPSGVFELKYFFSSHVSTEGGGECSSTAIRALIKKMVAAENRSKPLSDSK
IAELIAEQGIQVARRTIAKYRESLNIPSSSQRKSLL
>IL0745 rpoS, DNA-directed RNA polymerase sigma 38 subunit
MSRIKEEAVENVEANEDESIVDSTDSAAEELEEALSSSSTQYQKKMDATQ
LYLGEIGFSPLLTAEEEVFYSRRALKGDKAARRRMIESNLRLVVKIARRY
SNRGLPLLDLVEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIM
NQTRTIRLPIHVVKELNVYLRAARELAHKLDHEPTAEDIAKSLNKPVGDI
TKMLRLNERIGSVDTPIGGDNDKALLDILTDDADTGPEGVLQDENLKGNI
TEWLQSLNQKQREVLARRFGLMGYEPSTLEDVGREIGLTRERVRQIQVEA
LRKLRDSLKQQGLTLDSLFTAQ
>IL2381 rpoZ, DNA-directed RNA polymerase omega subunit
MARVTVEDAVDRVGNRFDLILLASRRARQLANGKEPLVETKNEKPTVIAL
REIEQGLIDNERLDIEDQAAQKQQDAEELRAVDALRGIE
>IL2308 rsd, Regulator of sigma D
MLSRNEQAKKRWGGAHKSIDLWLSERQDLLVNYFKLAALPPYESIRSGLP
DVTDIRNFCGQLVDYVSSGHFEIYDQIVREASSQGNSVDDLADELFPLIS
DTTEIALDFNDKYGEISSTDHCETFDRDLSALGEALELRMEFEDKLLNHL
DEHNLITA
>IL1566 sIR2, SIR2-like regulatory protein, NAD-dependent protein deacetylase
MTFLRDNAPVTVITGAGISTDSGIPDYRDNKGEWKRTPPVQHQDYMRSEA
VRKRYWARSLFGWPVLYHAKPNSAHYAIAEFQQQGLIGCVITQNVDGLHQ
KAGATRVINLHGYANDMVCMSCREITPRLDMHERSLKLNPDFAALEATAA
PDGDADLEADFEQFKVAGCRSCGGILKPDVVYFGDNVPRPRVEEAQKSLE
NSNALLAIGTSLMVFSGYRFARQAHQSNQPVALLTLGKTRADELATLKLN
CSIKDVLA
>IL0631 soxR_1, Transcriptional regulator, MerR family
MRIGQLAQLVGVETQTIRFYEQQGLLPPPDRQDNGYRVYTEKHGEGLAFI
RRCRILGLSLAEIHELQSYQDDPHQPCTAVNALLDDHISHVRSQITALQA
LEKQLVSLRASCNDDREVEACGVLAGISEGNMHQQ
>IL0801 soxR_2, Transcriptional regulator, MerR family
MDIAKVAKLSGVPASTLRFYEEKGLITSVGRQGLRRVFNANILDQLALIA
LGRAAGFSLDEIARMIGSKGKPNIDRELLANKADELDRTIQKLTGMRDGL
RHAAACSAPSHMECPKFRRLLGLAADGAWSK
>IL0873 soxR_3, Transcriptional regulator, MerR family
MNNKVTYSIGELAKEFDITTRSIRFYEDEGLLSPRRQGQQRIYTNKDRVR
LKLILRGKRLGFSLAETRRLFELYDADNSSAAQLEKVLELVSEKKHSLKQ
QMEDINVLLTELSGLEQRCQDELENIQSSVSEVHSQESL
>IL1243 soxR_4, Transcriptional regulator, MerR family
MRIGQLAQLVGVETQTIRFYEQQGLLPPPDRQDNGYRVYTEKHGEGLAFI
RRCRILGLSLAEIHELQSYQDDPHQPCTAVNALLDDHISHVRSQITALQA
LEKQLVSLRASCNDDREVEACGVLAGISEGNMHQQ
>IL2380 spoT, (p)ppGpp synthetase I
MYLFEGLKAQVSEYLPSEQVERIRDAFVVANEAHSSQKRSSGEPYITHPV
AVASLLADMRLDCETLMAALLHDVIEDTETSREDLAERFGATVASLVEGV
SKLDKLQFNSKEEAQAENYRKMIMAMVQDIRVILIKLADRTHNMRTIQHL
RPDKRRRIARETLEIYAPLAHRLGMHDIKNELEQLGFWALYPWRGKLLES
EVKRARGNRREFTERVQSEISSRLDGNNIQARVSGREKHLHSIYRKMQAK
EVKFEQVMDIYAFRVIVDSVDTCYRVLGALHNLYKPIETRFKDYIAIPKS
NGYQSLHTSLKGPHGVPVEIQIRTEEMDLMADRGVAAHWMYKQSDDSSTT
AQVRARKWMQSLLELQQSAGNSFEFIESVKSDLFPDEIYVFSPDGRITEL
PQGATAVDFAYAVHTDVGNTCIGARVNHRTYSLSKPLETGQTVEIKTAPN
SRPNIAWLNFVVTGKARAKIRQYLKSQEADEAQQLGERLLRSALGQVSYD
EIPEAEFKRVLQETKIDSRENLLKQIGLGNMMSVAIAKRLLGDLQPIKDD
NASQKSLSIKGAEGLLVSFAKCCRPIPGDDIIAHVSPGKGLVIHRRECKN
VRGHEDDPGRYFPVEWDNKPEAEFISEIRIEIVNNQGVLAKLTSAIATTG
CNIDGLQTEEIDANIYFIDVALTIKNRKHLADVIRHIRKMPDVQRVTRLR
K
>IL2131 srmB, ATP-dependent RNA helicase
MTPDWEEFDLDDRLIAVLRDAELNKPAKVQQQSIPAALDGRDLLISAPTG
TGKTLAFLLPALQHLLDFPRQQPGPARILVLAPTRELAEQIHEQAKQFEA
KTGLTSVVVTGGINYGSQLSVLEKTHDILVATPGRLMDLLEAEQYNLEGI
EWLIIDEADRMLDMGFAATVKEMALQARHRQQSLLLSATLNSSGVIKFSR
ELLTEPEYIDVQPPKRERGKILQWVHLADTDEHKRKLLMSVLQAHPGRQF
VFVRTRERVELIANFLRSQFGTGRKIVTLRGDMPQSDRQRIMNELKQTTE
ITLVATDIAARGLDVDDITLVVNYDLPKQADVYLHRIGRTARGGQKGTAV
SLVEAHDALLLGRVERYLDAKLDRRTIEGLKPQYKFPSTEKSRSKKKVKK
KTDKKKKSR
>IL0281 tex, Transcriptional accessory protein
MSQIPQLLANELKVDERQISSVIQLLDEGSTVPFIARYRKEVTGGLDDTQ
LRQLHQRLNYLRELDDRRQVILKSIDEQGKLTDELTQSIKTADSKTELED
LYLPYKPKRRTKGQIAIEAGLEPLADLLWKDPTKNPEQAAAEYIDADKGF
ADAKAVLDGARAILMERFAEQAELLKRLRSHLWQNAHLTSTVAAGKEKEG
AKFRDYFEFSELFKTIPSHRTLALLRGRNEGFLQLSMDADPGSEDTTSGS
HCEVIIADFLNFEHKGRAADDWLRQVIQWTWRVKLSLHMETELMARVRER
AEEAAIQVFASNLKDLLMAAPAGAKTTMGLDPGVRTGVKVAVVDETGKAV
ATNTVFPFQPQNQMDKAMRTLATLCKQYKVELISIGNGTHSRETDKMVGD
MLKQHSDIKATKVIVNEAGASVYSASELAAQEFPNMDVSLRGAVSIARRL
QDPLAELVKIEPKSIGVGQYQHDVSQSQLAQSLDAVVEDCVNAVGVDANM
ASAALLQRVSGLSKTLAKNLVEHRDAHGAFRNRKQLLDVARMGPKAFEQA
AGFLRISNGEQPLDASSVHPEAYTVVERIAKTNSIPVQELIGNQQLIKTL
NAKDYTDERFGLPTVTDILSELEKPGRDPRPEFKMAEFKEGVEKVSDLKP
GMLLEGVVTNVANFGAFIDVGVHQDGLVHISALADKFVSDPREVVKAGDI
VKVKVLEVDIERKRIGLTMRLSDEAPANTAGSDKPKAKTGSGPKKKPSGN
GGRAPQPQNSAMGSALADAFAKAKKD
>IL0237 ttk, Transcriptional regulator, TetR family
MAEQKRNRREEILQALAAMLETSPGQRITTAKLAANLGVSEAALYRHFPS
KARMFEGLIEFVEDTLLTRINMIMDEEKNTLSRCHAILQLLLTFAERNPG
ITRVMTGDALMGEHDRLRGRMEDLFNRIESSIKQILREKAMREQQRFIVD
EAVLANLLLSYADGKISQFVRSNFKRLPTEHFSAQWQVMEQQLISA
>IL0723 tyrR, Transcriptional regulator of aromatic amino acids metabolism
MRLEITCDDRLGICQDVLQILRDHEIDLRGIEVDPKGKIFLNFPELAFDD
FRHLMPQIRRIPNIIDVKTIPYMPFEREHYEFSLLLSTLPDPVLSIDSKG
HIDIINDAGLRLLAGQEDSLKGEPLMQYVHGISLQRWLDKKPRDPIYEAV
TIGNSEYYAQLLPIWVNDEEGSTAFAGAVMTCKSEPVTATWQSQTNEKAF
ERLLTDNSTMKRVIKDAQRMAELDAPLLIEGETGVGKELLAKACHLASQR
QDKPFLAINCAALPDNVAESELFGHGEGSISSQSTRKTGVLEQSAGGTVL
LDSVSEMSIGLQAKLLRFLEDGVFRRIGEEQEVSVDVRVICTAQGNLYEL
VENGEFREDLYYRLNVLALNVPPLRERKSDILLLAEHFVTQACKKLGRSQ
VSLSRAAKERLKRYQWPGNVRQLENTMFRSVSMIEGYTLEPADIRLPELN
QEDDQLALDIDDMSLDDAVRRFESHVLRRLYPSFPSTRQLAKRLGLSHTA
VANKLRDYGIGKQRSGRARKAEQTKK
>IL0654 uvrY, Response regulator, LuxR family (CheY, HTH domains)
MNRIILAIPSPIISAGMASVLQQHFSDQILTVTGIADLRRACYEYEDAVV
VLCSRLGGAATVEHWRRLKRRHCDLKLIVWGSSQQDILDFQCGISVVDGY
LLDSCDSADLVQAIRSLKQGNVFVAAPVAAYLAQNPRSQQQKTMVDMLSE
RELQVAQMLSRGIRVREISRHLCISSKTINTFRYRIFSKLGIDGDVQLSH
LAIQSGLVDLIQFEGR
>IL1943 vacB, Exoribonuclease R
MSDNQQNNSTPEYEVEIPGREQLLELVTSNSKPVQFDEFIRHFGLDDERQ
AIGLKRRLRAMERDGQLIYSKANAYGLPERMDLIKGRIIGHKDGFGFCQT
EDGGKDLFIPHHQMYSVLHGDRVLVKTSGKDSRGRTEGRIVRVTEPRDSN
IVGRYFVEHDLGIVVPDDGRISQDILIPDADKNGARHGQLVVVEITRRPS
RRTSPIGRVSEVLGEHMAPGMEIQVAIREHDIPTEWPTEVDEELKKYSEE
VPAEAYEGRKDLRDLPLITIDGEDSRDFDDAVCCVQEEKGWRLWVAIADV
SYYVRPDTVLDKAATERGNSVYFPSNVIPMLPEKLSNGLCSLNPDVDRLC
MVAEMELGPRGKLKSTEFYPAVMKSHARLTYNKVKKLLDGDEELQQQYQH
VMDNVQELERLYNALSAARKRRSAIEFDTQETRFIFNAQRKIESIEPVKR
HVAHKIIEECMIMANVASAQLIESDKEVGALFRVHETPADERLNNFRSFL
GELGLNLEGGDEPSPKDYATLLEQVKDRQDHELIETMLLRSMQQAVYQPE
NKGHFGLALKSYAHFTSPIRRYPDLILHRAIKAILRKKKGEEKGLVGAWA
YSDKQLDELGVHTSMTERRADDATRQVDEWLKCEFMLDHIGMEFEGVISS
VTNFGLFVRLSDYQIDGLIHISNLDNDYYHFDQQKGMLIGENSNSVFRLG
DNVKVKVKDVNLDDRKIDLTLLEATSPGGQKRNMPAKGSGKGKRKGQSRG
KGGQRKSGNRSSNKGRSKS