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2024-05-18 16:20:02

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 173

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Geobacter sulfurreducens PCA, PCA
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA GSU3130 lipoprotein, putativechromosome CDS3430691 663 - 0.647059
NA GSU2793 hypothetical proteinchromosome CDS3072206 294 - 0.632653
NA GSU1200 ribosomal protein S1chromosome CDS1303580 1209 + 0.634409
NA GSU1329 tRNA synthetases class I (E and Q), catalytic domain proteinchromosome CDS1453943 945 + 0.719577
NA GSU2455 conserved hypothetical proteinchromosome CDS2694757 441 - 0.580499
NA GSU0691 translation initation factor SUI1, putativechromosome CDS730972 366 - 0.669399
NA GSU3320 ribosomal protein L11 methyltransferase, putativechromosome CDS3646373 597 - 0.651591
NA GSU0443 ribonuclease D, putativechromosome CDS475021 1146 + 0.657068
NA GSU1587 ribosomal protein L7Ae family proteinchromosome CDS1739855 618 + 0.580906
NA GSU3160 RNA pseudouridine synthase family proteinchromosome CDS3466826 753 + 0.687915
NA GSU3353 RNA pseudouridine synthase family proteinchromosome CDS3684041 891 - 0.671156
NA GSU0971 peptidyl-tRNA hydrolase domain proteinchromosome CDS1047989 324 - 0.595679
NA GSU1753 lysyl-tRNA synthetase-related proteinchromosome CDS1915994 924 + 0.62013
NA GSU2568 MiaB-like tRNA modifying enzymechromosome CDS2829875 1305 - 0.679693
NA GSU1005 dihydrouridine synthase family proteinchromosome CDS1085392 978 - 0.652352
NA GSU3382 hypothetical proteinchromosome CDS3718661 345 - 0.614493
NA GSU1197 RNA methyltransferase, TrmH family, group 2, putativechromosome CDS1300548 495 - 0.626263
NA GSU1748 RNA methyltransferase, TrmA familychromosome CDS1912930 1317 - 0.611997
NA GSU0457 lipoprotein, putativechromosome CDS487869 690 - 0.668116
NA GSU2115 hypothetical proteinchromosome CDS2333091 522 - 0.568965
NA GSU1596 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS1749952 612 + 0.544118
NA GSU3205 MiaB-like tRNA modifying enzyme YliGchromosome CDS3511168 1344 + 0.620536
NA GSU1749 hypothetical proteinchromosome CDS1914239 513 - 0.512671
NA GSU1843 metallo-beta-lactamase family proteinchromosome CDS2011297 1428 + 0.642157
NA GSU2184 polyA polymerase family proteinchromosome CDS2393737 1293 - 0.673627
NA GSU3254 phosphoglucomutase/phosphomannomutase family proteinchromosome CDS3566149 2511 + 0.614098
NA GSU0216 conserved hypothetical proteinchromosome CDS225681 216 - 0.564815
NA GSU1206 HDIG domain proteinchromosome CDS1310650 597 + 0.663317
NA GSU1263 conserved hypothetical protein TIGR00253chromosome CDS1375122 297 - 0.606061
NA GSU0546 peptidyl-tRNA hydrolase domain proteinchromosome CDS578710 381 + 0.648294
NA GSU0921 ribonuclease, Rne/Rng family proteinchromosome CDS986118 2427 - 0.638237
NA GSU0434 conserved hypothetical proteinchromosome CDS464944 1005 - 0.629851
NA GSU1462 RNA methyltransferase, TrmH family, group 3chromosome CDS1602445 738 + 0.605691
NA GSU0035 2',5' RNA ligase, putativechromosome CDS45707 540 - 0.627778
NA GSU3103 modification methylase, HemK familychromosome CDS3406891 855 - 0.636257
NA GSU2235 endoribonuclease L-PSP, putativechromosome CDS2450222 381 - 0.616798
NA GSU1387 CRISPR-associated protein, CT1975 familychromosome CDS1516947 1095 + 0.546119
NA GSU1181 hypothetical proteinchromosome CDS1288446 318 - 0.515723
NA GSU3379 translation initiation factor, putative, aIF-2BI familychromosome CDS3714645 1041 - 0.638809
NA GSU3307 histidyl-tRNA synthetase, putativechromosome CDS3631136 1317 + 0.609719
NA GSU1452 RNA methyltransferase, TrmA familychromosome CDS1589716 1488 - 0.604167
NA GSU0065 cytidine/deoxycytidylate deaminase family proteinchromosome CDS81425 540 + 0.581481
NA GSU0871 radical SAM domain protein/B12 binding domain proteinchromosome CDS927359 1665 + 0.672072
NA GSU1475 RNA methyltransferase, TrmH family, group 1chromosome CDS1616582 768 + 0.598958
NA GSU2749 NOL1/NOP2/sun family proteinchromosome CDS3024642 960 + 0.683333
alaS GSU0148 alanyl-tRNA synthetasechromosome CDS163809 2628 + 0.648782
argS GSU1812 arginyl-tRNA synthetasechromosome CDS1978284 1707 - 0.602226
asnS GSU1156 asparaginyl-tRNA synthetasechromosome CDS1261648 1386 + 0.635642
aspS GSU1463 aspartyl-tRNA synthetasechromosome CDS1603748 1785 + 0.563585
cafA GSU3239 ribonuclease Gchromosome CDS3551672 1596 - 0.587719
cysS GSU3365 cysteinyl-tRNA synthetasechromosome CDS3697619 1446 - 0.600277
dbpA GSU0189 ATP-dependent RNA helicase DbpAchromosome CDS201957 1383 + 0.63919
def-1 GSU0129 polypeptide deformylasechromosome CDS144291 549 + 0.579235
def-2 GSU3456 polypeptide deformylasechromosome CDS3803386 510 - 0.623529
dtd GSU0525 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS559887 459 - 0.623094
efp-1 GSU0465 translation elongation factor Pchromosome CDS495363 564 + 0.625886
efp-2 GSU1752 translation elongation factor Pchromosome CDS1915425 564 + 0.567376
fmt GSU0130 methionyl-tRNA formyltransferasechromosome CDS144850 954 + 0.644654
frr GSU1918 ribosome recycling factorchromosome CDS2097242 558 - 0.532258
fusA-1 GSU1933 translation elongation factor Gchromosome CDS2113735 2094 - 0.58978
fusA-2 GSU2529 translation elongation factor Gchromosome CDS2788182 2070 + 0.678261
fusA-3 GSU2860 translation elongation factor Gchromosome CDS3130763 2079 - 0.545936
gatA GSU3381 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS3717158 1458 - 0.662551
gatB GSU3380 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS3715702 1440 - 0.63125
gatC GSU3383 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS3718983 288 - 0.572917
gid GSU2547 gid proteinchromosome CDS2808536 1305 - 0.665134
glnS GSU3366 glutaminyl-tRNA synthetasechromosome CDS3699097 1665 - 0.624625
gltX GSU1219 glutamyl-tRNA synthetasechromosome CDS1322000 1401 + 0.617416
glyQ GSU0578 glycyl-tRNA synthetase, alpha subunitchromosome CDS607314 879 + 0.624573
glyS GSU0579 glycyl-tRNA synthetase, beta subunitchromosome CDS608194 2064 + 0.662791
hisS GSU1659 histidyl-tRNA synthetasechromosome CDS1821195 1242 + 0.582931
ileS GSU3136 isoleucyl-tRNA synthetasechromosome CDS3439773 2772 - 0.638167
infA GSU1750 translation initiation factor IF-1chromosome CDS1914919 219 + 0.506849
infB GSU1588 translation initiation factor IF-2chromosome CDS1740450 2652 + 0.599548
infC GSU1516 translation initiation factor IF-3chromosome CDS1664075 519 + 0.547206
ksgA GSU1864 dimethyladenosine transferasechromosome CDS2040541 831 - 0.624549
leuS GSU2209 leucyl-tRNA synthetasechromosome CDS2422929 2475 - 0.618182
lysS GSU2271 lysyl-tRNA synthetasechromosome CDS2487384 1476 - 0.605014
map GSU2835 methionine aminopeptidase, type Ichromosome CDS3117790 747 - 0.534137
metG GSU2232 methionyl-tRNA synthetasechromosome CDS2447694 1533 + 0.59426
miaA GSU2000 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS2191725 936 - 0.602564
miaB GSU2198 tRNA-i(6)A37 modification enzyme MiaBchromosome CDS2410541 1341 - 0.604773
pcnB GSU3250 polyA polymerasechromosome CDS3561440 1368 + 0.669591
pheS GSU1519 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS1665346 1020 + 0.592157
pnp GSU1593 polyribonucleotide nucleotidyltransferasechromosome CDS1746052 2094 + 0.582617
prfA GSU3104 peptide chain release factor 1chromosome CDS3407771 1068 - 0.623595
prfB GSU2278 peptide chain release factor 2, programmed frameshiftchromosome CDS2494365 1120 - 0.609821
prfC GSU0138 peptide chain release factor 3chromosome CDS152504 1581 + 0.598988
prmA GSU0447 ribosomal protein L11 methyltransferasechromosome CDS477851 900 - 0.67
proS GSU1460 prolyl-tRNA synthetasechromosome CDS1599970 1713 + 0.61763
pth GSU0663 peptidyl-tRNA hydrolasechromosome CDS699603 582 + 0.589347
queA GSU2620 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS2890299 1032 - 0.679264
rbfA GSU1589 ribosome-binding factor Achromosome CDS1743169 357 + 0.537815
relE GSU2439 RelE proteinchromosome CDS2674078 291 + 0.5189
rhlB GSU0522 ATP-dependent RNA helicase RhlBchromosome CDS555700 1332 + 0.638889
rhlE-1 GSU0491 ATP-dependent RNA helicase RhlEchromosome CDS523215 1353 - 0.644494
rhlE-2 GSU0914 ATP-dependent RNA helicase RhlEchromosome CDS980161 1344 + 0.6875
rimM GSU0645 16S rRNA processing protein RimMchromosome CDS678444 519 + 0.570328
rluB GSU1403 ribosomal large subunit pseudouridine synthase Bchromosome CDS1544951 744 + 0.666667
rluC GSU0671 ribosomal large subunit pseudouridine synthase Cchromosome CDS704918 891 - 0.631874
rluD GSU0082 ribosomal large subunit pseudouridine synthase Dchromosome CDS93714 969 + 0.654283
rph GSU1795 ribonuclease PHchromosome CDS1960791 717 - 0.560669
rplA GSU2866 ribosomal protein L1chromosome CDS3143569 705 - 0.607092
rplB GSU2854 ribosomal protein L2chromosome CDS3126780 825 - 0.53697
rplC GSU2857 ribosomal protein L3chromosome CDS3128558 633 - 0.551343
rplD GSU2856 ribosomal protein L4chromosome CDS3127910 624 - 0.504808
rplE GSU2845 ribosomal protein L5chromosome CDS3123285 540 - 0.505556
rplF GSU2842 ribosomal protein L6chromosome CDS3122077 540 - 0.538889
rplI GSU0668 ribosomal protein L9chromosome CDS703129 447 + 0.561521
rplJ GSU2865 ribosomal protein L10chromosome CDS3142865 525 - 0.579048
rplK GSU2867 ribosomal protein L11chromosome CDS3144291 426 - 0.561033
rplL GSU2864 ribosomal protein L7/L12chromosome CDS3142434 384 - 0.585938
rplM GSU2876 ribosomal protein L13chromosome CDS3152018 432 - 0.564815
rplN GSU2847 ribosomal protein L14chromosome CDS3124189 369 - 0.514905
rplO GSU2838 ribosomal protein L15chromosome CDS3120512 447 - 0.548098
rplP GSU2850 ribosomal protein L16chromosome CDS3125019 423 - 0.550827
rplQ GSU2830 ribosomal protein L17chromosome CDS3114556 528 - 0.5625
rplR GSU2841 ribosomal protein L18chromosome CDS3121690 369 - 0.528455
rplS GSU0648 ribosomal protein L19chromosome CDS680352 357 + 0.560224
rplT GSU1518 ribosomal protein L20chromosome CDS1664918 354 + 0.570621
rplU GSU3236 ribosomal protein L21chromosome CDS3550937 309 - 0.530744
rplV GSU2852 ribosomal protein L22chromosome CDS3126113 336 - 0.553571
rplW GSU2855 ribosomal protein L23chromosome CDS3127629 285 - 0.501754
rplX GSU2846 ribosomal protein L24chromosome CDS3123839 327 - 0.519878
rplY GSU0662 ribosoma protein L25chromosome CDS698985 585 + 0.586325
rpmA GSU3235 ribosomal protein L27chromosome CDS3550599 258 - 0.600775
rpmB GSU2234 ribosomal protein L28chromosome CDS2449922 192 + 0.5625
rpmC GSU2849 ribosomal protein L29chromosome CDS3124841 195 - 0.461538
rpmD GSU2839 ribosomal protein L30chromosome CDS3120978 180 - 0.522222
rpmE GSU3107 ribosomal protein L31chromosome CDS3410597 198 - 0.535354
rpmF GSU1599 ribosomal protein L32chromosome CDS1751673 183 + 0.551913
rpmG GSU2870 ribosomal protein L33chromosome CDS3145659 150 - 0.506667
rpmI GSU1517 ribosomal protein L35chromosome CDS1664631 198 + 0.535354
rpsA GSU2603 ribosomal protein S1chromosome CDS2870277 1725 - 0.63942
rpsB GSU1921 ribosomal protein S2chromosome CDS2099339 756 - 0.568783
rpsC GSU2851 ribosomal protein S3chromosome CDS3125460 636 - 0.52673
rpsD GSU2832 ribosomal protein S4chromosome CDS3116173 627 - 0.53429
rpsE GSU2840 ribosomal protein S5chromosome CDS3121179 489 - 0.550102
rpsF GSU0665 ribosomal protein S6chromosome CDS701466 354 + 0.59322
rpsG GSU2861 ribosomal protein S7chromosome CDS3132883 471 - 0.543524
rpsH GSU2843 ribosomal protein S8chromosome CDS3122645 399 - 0.533835
rpsI GSU2875 ribosomal protein S9chromosome CDS3151592 393 - 0.608142
rpsJ GSU2858 ribosomal protein S10chromosome CDS3129218 309 - 0.533981
rpsK GSU2833 ribosomal protein S11chromosome CDS3116837 396 - 0.568182
rpsM GSU2834 ribosomal protein S13chromosome CDS3117254 369 - 0.571816
rpsN GSU2844 ribosomal protein S14chromosome CDS3123080 186 - 0.526882
rpsO GSU1592 ribosomal protein S15chromosome CDS1745512 267 + 0.524345
rpsP GSU0643 ribosomal protein S16chromosome CDS677853 288 + 0.552083
rpsQ GSU2848 ribosomal protein S17chromosome CDS3124571 258 - 0.468992
rpsR GSU0666 ribosomal protein S18chromosome CDS701840 312 + 0.592949
rpsS GSU2853 ribosomal protein S19chromosome CDS3126471 282 - 0.492908
rpsT GSU2206 ribosomal protein S20chromosome CDS2421038 264 + 0.590909
rpsU-1 GSU0906 ribosomal protein S21chromosome CDS972287 201 - 0.552239
rpsU-2 GSU3093 ribosomal protein S21chromosome CDS3399113 198 - 0.489899
selB GSU0102 selenocysteine-specific translation elongation factorchromosome CDS116665 1911 + 0.637886
serS GSU0037 seryl-tRNA synthetasechromosome CDS47406 1269 + 0.584712
sun GSU3373 Sun proteinchromosome CDS3707306 1347 + 0.648849
tgt-1 GSU1175 queuine tRNA-ribosyltransferasechromosome CDS1280212 1107 - 0.596206
tgt-2 GSU2619 queuine tRNA-ribosyltransferasechromosome CDS2889104 1122 - 0.647059
thrS GSU1515 threonyl-tRNA synthetasechromosome CDS1662153 1911 + 0.59079
trmD GSU0646 tRNA (guanine-N1)-methyltransferasechromosome CDS678959 738 + 0.602981
trmU GSU2569 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS2831179 1098 - 0.681239
trpS GSU1833 tryptophanyl-tRNA synthetasechromosome CDS1998944 984 - 0.597561
truA GSU2877 tRNA pseudouridine synthase Achromosome CDS3152554 735 - 0.661224
truB GSU1591 tRNA pseudouridine synthase Bchromosome CDS1744474 915 + 0.584699
tsf GSU1920 translation elongation factor Tschromosome CDS2098613 651 - 0.557604
tuf-1 GSU2859 translation elongation factor Tuchromosome CDS3129545 1191 - 0.605374
tuf-2 GSU2871 translation elongation factor Tuchromosome CDS3145862 1191 - 0.607053
tylA GSU1420 hemolysin Achromosome CDS1557042 684 + 0.619883
tyrS GSU1139 tyrosyl-tRNA synthetasechromosome CDS1222614 1212 + 0.556931
valS GSU2045 valyl-tRNA synthetasechromosome CDS2242180 2664 - 0.618994
ychF GSU0664 GTP binding protein YchFchromosome CDS700226 1095 + 0.615525
yfiA GSU1886 ribosomal subunit interface proteinchromosome CDS2064476 546 - 0.538462