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2024-05-19 05:59:00

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 187

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Yersinia pestis biovar Medievalis str. 91001, 91001
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA YP0579 Predicted RNA-binding protein containing KH domain, possibly ribosomal proteinchromosome CDS618458 294 - 0.438776
NA YP1858 Predicted GTPasechromosome CDS2067235 1092 - 0.495421
NA YP0963 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 familychromosome CDS1038350 945 - 0.486772
NA YP3781 hypothetical proteinchromosome CDS4306716 537 - 0.409683
NA YP1644 hypothetical proteinchromosome CDS1794689 582 - 0.489691
NA YP2953 hypothetical proteinchromosome CDS3287948 513 + 0.419103
NA YP2534 putative zinc-binding proteinchromosome CDS2803922 564 + 0.537234
NA YP0451 conserved hypothetical proteinchromosome CDS476003 1062 - 0.490584
NA YP1843 hypothetical proteinchromosome CDS2053262 906 - 0.40287
NA YP0448 conserved hypothetical proteinchromosome CDS472978 1080 - 0.525
NA YP3714 hypothetical proteinchromosome CDS4228973 2448 + 0.35335
NA YP0517 putative lysyl-tRNA synthetasechromosome CDS551708 978 + 0.492843
NA YP3851 hypothetical proteinchromosome CDS4377138 645 - 0.415504
NA YP0652 putative yhbH sigma 54 modulatorchromosome CDS697620 465 - 0.434409
NA YP3892 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 familychromosome CDS4430254 1068 + 0.5103
NA YP0472 Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 familychromosome CDS504072 1038 + 0.519268
alaS YP0381 alanyl-tRNA synthetasechromosome CDS404184 2628 + 0.5
alcB YP1420 putative siderophore biosynthetic enzymechromosome CDS1569127 546 + 0.485348
ampM YP2808 methionine aminopeptidasechromosome CDS3118154 792 + 0.488636
ansA YP1961 L-asparaginase Ichromosome CDS2179170 1017 - 0.476893
ansB YP1207 putative L-asparaginase II precursorchromosome CDS1311148 1038 - 0.467245
argS YP1889 arginyl-tRNA synthetasechromosome CDS2105492 1731 - 0.499133
asnS YP1181 asparaginyl-tRNA synthetasechromosome CDS1274133 1401 + 0.498929
aspS YP1896 aspartyl-tRNA synthetasechromosome CDS2114019 1797 + 0.510851
cafA YP3877 ribonuclease Gchromosome CDS4412949 1470 - 0.476871
cca YP2965 tRNA nucleotidyltransferasechromosome CDS3299482 1239 - 0.533495
cspR YP0071 putative methyltransferasechromosome CDS80243 489 - 0.490798
cysS YP0852 cysteinyl-tRNA synthetasechromosome CDS923548 1431 + 0.494759
dbpA YP1617 ATP-dependent RNA helicasechromosome CDS1765122 1383 - 0.501085
ddhA YP0815 glucose-1-phosphate cytidylyltransferasechromosome CDS881243 786 + 0.437659
deaD YP0595 inducible ATP-independent RNA helicasechromosome CDS636422 2010 + 0.535323
def YP0240 polypeptide deformylasechromosome CDS239655 513 - 0.452242
dtd YP0030 D-Tyr-tRNAtyr deacylasechromosome CDS38620 438 + 0.488584
efp1 YP0510 elongation factor Pchromosome CDS546560 633 + 0.478673
efp2 YP1307 putative elongation factor Pchromosome CDS1430904 642 + 0.457944
fmt YP0239 methionyl-tRNA formyltransferasechromosome CDS238683 948 - 0.470464
frr YP2804 ribosome recycling factorchromosome CDS3114382 558 - 0.47491
ftsJ YP0580 ribosomal RNA large subunit methyltransferase Jchromosome CDS618886 642 + 0.453271
fusA YP0201 elongation factor Gchromosome CDS214993 2109 + 0.480797
gatA YP0671 probable amidasechromosome CDS724244 1398 - 0.550072
glnS1 YP0287 putative glutamyl-tRNA synthetasechromosome CDS294342 1155 - 0.501299
glnS2 YP1084 glutaminyl-tRNA synthetasechromosome CDS1161488 1758 - 0.493174
gltX YP2609 glutamyl-tRNA synthetasechromosome CDS2892867 1416 + 0.492232
glyQ YP3982 glycyl-tRNA synthetase alpha subunitchromosome CDS4534384 915 - 0.527869
glyS YP3981 glycyl-tRNA synthetase beta subunitchromosome CDS4532305 2070 - 0.523188
gshB YP3507 glutathione synthetasechromosome CDS3992432 960 - 0.491667
hemK1 YP1866 putative protoporphyrinogen oxidasechromosome CDS2075410 831 + 0.535499
hemK2 YP2413 Predicted rRNA or tRNA methylasechromosome CDS2682746 1002 - 0.48004
hisS YP2744 histidyl-tRNA synthetasechromosome CDS3044397 1275 - 0.507451
holE YP1611 DNA polymerase III, theta subunitchromosome CDS1759520 231 + 0.441558
hslR YP0141 heat shock protein 15chromosome CDS154484 408 - 0.522059
ileS YP3705 isoleucyl-tRNA synthetasechromosome CDS4217488 2817 - 0.500887
infA YP1223 translation initiation factor IF-1chromosome CDS1337052 219 + 0.497717
infB YP0587 protein chain initiation factor IF-2chromosome CDS626897 2679 + 0.4972
infC YP2220 protein chain initiation factor IF-3chromosome CDS2469177 351 - 0.475783
iucB YP3449 putative siderophore biosynthesis protein IucBchromosome CDS3918999 951 - 0.554154
ksgA2 YP3687 dimethyladenosine transferasechromosome CDS4201967 819 + 0.47619
lasT YP2556 putative SpoU-family rRNA methylasechromosome CDS2831207 774 + 0.502584
leuS YP1103 leucyl-tRNA synthetasechromosome CDS1185466 2583 + 0.510647
ligT YP0290 putative 2'-5' RNA ligasechromosome CDS297062 576 - 0.565972
lysS YP3584 lysyl-tRNA synthetasechromosome CDS4076685 1518 - 0.479578
map YP0350 methionine aminopeptidasechromosome CDS367013 786 - 0.510178
mhpC2 YP1844 putative exported proteinchromosome CDS2054958 1074 - 0.485102
miaA YP0528 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS567203 942 + 0.511677
miaB YP1093 putative tRNA-thiotransferasechromosome CDS1174635 1539 + 0.482131
pcnB YP0286 poly(A) polymerasechromosome CDS292778 1422 - 0.525316
pelY YP3357 periplasmic pectate lyase precursorchromosome CDS3759484 1719 - 0.4968
pheM YP2216 phenylalanyl-tRNA synthetase operon leader peptidechromosome CDS2467007 984 - 0.47561
pnp YP0593 polyribonucleotide nucleotidyltransferasechromosome CDS633028 2214 + 0.498645
prfA YP1865 peptide chain release factor 1chromosome CDS2074328 1083 + 0.514312
prfB1 YP2783 Protein chain release factor Bchromosome CDS3093324 441 - 0.489796
prfB2 YP3585 peptide chain release factor RF-2chromosome CDS4078212 933 - 0.46731
prfC YP3751 peptide chain release factor 3chromosome CDS4273611 1590 - 0.497484
prmA YP3891 ribosomal protein L11 methyltransferasechromosome CDS4428847 921 + 0.53203
proS YP2781 prolyl-tRNA synthetasechromosome CDS3090704 1719 + 0.499127
pth YP1859 peptidyl-tRNA hydrolasechromosome CDS2068490 621 - 0.47182
queA YP0739 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS800624 1071 + 0.513539
rbfA YP0588 ribosome-binding factor Achromosome CDS629587 465 + 0.453763
relE YP3582 conserved hypothetical proteinchromosome CDS4073930 261 - 0.394636
rhlB YP3176 putative DEAD-box helicasechromosome CDS3544289 1269 - 0.484634
rimJ YP1884 ribosomal-protein-alanine acetyltransferasechromosome CDS2094387 585 + 0.483761
rimL YP1699 putative acetyltransferasechromosome CDS1876792 900 + 0.438889
rimM YP0392 16S rRNA processing proteinchromosome CDS415926 561 + 0.467023
rluA1 YP2262 ribosomal large subunit pseudouridine synthaseCchromosome CDS2507134 963 - 0.503634
rluA2 YP2813 Pseudouridylate synthases, 23S RNA-specificchromosome CDS3123765 774 - 0.48708
rluA3 YP3682 ribosomal large subunit pseudouridine synthase Achromosome CDS4195345 621 + 0.489533
rluD YP0654 ribosomal large subunit pseudouridine synthase Dchromosome CDS699204 978 + 0.48364
rmf YP1169 putative ribosome modulation factorchromosome CDS1257369 168 - 0.511905
rnd YP1918 ribonuclease Dchromosome CDS2138185 1161 + 0.477175
rne YP2263 ribonuclease Echromosome CDS2508671 3666 + 0.510638
rnpA YP4008 ribonuclease P proteinchromosome CDS4561695 360 + 0.508333
rph YP0045 ribonuclease PHchromosome CDS57315 717 + 0.51325
rplA YP3113 50S ribosomal protein L1chromosome CDS3467253 705 - 0.47234
rplB YP0210 50S ribosomal protein l2chromosome CDS222278 825 + 0.515152
rplC YP0207 50S ribosomal protein L3chromosome CDS220711 630 + 0.488889
rplD YP0208 50S ribosomal protein L4chromosome CDS221357 606 + 0.50165
rplE YP0219 50S ribosomal protein L5chromosome CDS226218 540 + 0.488889
rplF YP0222 50S ribosomal protein L6chromosome CDS227517 534 + 0.513109
rplI YP0545 50S ribosomal protein L9chromosome CDS583387 453 + 0.494481
rplJ YP3112 50S ribosomal protein L10chromosome CDS3466391 498 - 0.493976
rplK YP3114 50S ribosomal protein L11chromosome CDS3467961 429 - 0.487179
rplL YP3111 Ribosomal protein L7/L12chromosome CDS3465956 288 - 0.479167
rplM YP3818 50S ribosomal protein L13chromosome CDS4347548 444 - 0.490991
rplN YP0217 50S ribosomal protein L14chromosome CDS225507 372 + 0.502688
rplO YP0226 50S ribosomal protein L15chromosome CDS229117 435 + 0.510345
rplP YP0214 50S ribosomal protein L16chromosome CDS224471 411 + 0.508516
rplQ YP0233 50S ribosomal protein L17chromosome CDS233657 390 + 0.54359
rplR YP0223 50S ribosomal protein L18chromosome CDS228060 354 + 0.516949
rplS YP0394 50S ribosomal protein L19chromosome CDS417346 348 + 0.477012
rplT YP2218 50S ribosomal protein L20chromosome CDS2468489 357 - 0.498599
rplU YP0571 50S ribosomal protein L21chromosome CDS611438 360 + 0.463889
rplV YP0212 50S ribosomal protein L22chromosome CDS223410 333 + 0.501502
rplW YP0209 50S ribosomal protein L23chromosome CDS221959 303 + 0.485149
rplX YP0218 50S ribosomal protein L24chromosome CDS225889 315 + 0.460317
rplY YP1324 50S ribosomal protein L25chromosome CDS1453003 285 + 0.463158
rpmA YP0572 50S ribosomal protein L27chromosome CDS611817 258 + 0.488372
rpmB YP0051 50S ribosomal protein L28chromosome CDS62476 237 + 0.506329
rpmC YP0215 50S ribosomal protein L29chromosome CDS224881 192 + 0.5
rpmD YP0225 50S ribosomal protein L30chromosome CDS228934 180 + 0.433333
rpmE1 YP0112 50S ribosomal protein L31chromosome CDS120715 216 + 0.490741
rpmE2 YP0797 putative ribosomal proteinchromosome CDS859770 324 - 0.429012
rpmF YP2259 50S ribosomal protein L32chromosome CDS2505569 168 - 0.553571
rpmG YP0052 50S ribosomal protein L33chromosome CDS62724 168 + 0.392857
rpmH YP4007 50S ribosomal protein L34chromosome CDS4561536 141 + 0.510638
rpmI YP2219 50S ribosomal protein L35chromosome CDS2468883 198 - 0.459596
rpmJ1 YP0228 50S ribosomal protein L36chromosome CDS230924 117 + 0.444444
rpmJ2 YP0796 putative ribosomal protein L36chromosome CDS859611 144 - 0.479167
rpsA YP1201 30S ribosomal protein S1chromosome CDS1302163 1674 - 0.479092
rpsB YP2807 30S ribosomal protein S2chromosome CDS3116994 810 - 0.47284
rpsC YP0213 30S ribosomal protein S3chromosome CDS223760 699 + 0.493562
rpsD YP0231 30S ribosomal protein S4chromosome CDS231981 621 + 0.478261
rpsE YP0224 30S ribosomal protein S5chromosome CDS228428 504 + 0.484127
rpsF YP0542 30S ribosomal protein S6chromosome CDS582397 393 + 0.508906
rpsG YP0200 30S ribosomal protein S7chromosome CDS214429 471 + 0.47983
rpsH YP0221 30S ribosomal protein S8chromosome CDS227110 393 + 0.475827
rpsI YP3817 30S ribosomal subunit protein S9chromosome CDS4347141 399 - 0.493734
rpsJ YP0206 30S ribosomal protein S10chromosome CDS220367 312 + 0.525641
rpsK YP0230 30S ribosomal protein S11chromosome CDS231561 390 + 0.502564
rpsL YP0199 30S ribosomal protein S12chromosome CDS213958 375 + 0.506667
rpsM YP0229 30S ribosomal protein S13chromosome CDS231188 357 + 0.504202
rpsN YP0220 30S ribosomal protein S14chromosome CDS226771 306 + 0.513072
rpsO YP0590 30S ribosomal protein S15chromosome CDS631147 270 + 0.485185
rpsP YP0391 30S ribosomal protein S16chromosome CDS415668 249 + 0.502008
rpsQ YP0216 30S ribosomal protein S17chromosome CDS225072 255 + 0.466667
rpsR YP0544 30S ribosomal protein S18chromosome CDS583120 228 + 0.473684
rpsS YP0211 30S ribosomal protein S19chromosome CDS223117 279 + 0.505376
rpsT YP3708 30S ribosomal protein S20chromosome CDS4221689 264 + 0.465909
rpsU YP2960 30S ribosomal protein S21chromosome CDS3295286 216 - 0.462963
rsmC1 YP2908 putative methyltransferasechromosome CDS3228845 1191 + 0.496222
rsmC2 YP3754 ribosomal RNA small subunit methyltransferase Cchromosome CDS4276317 1044 + 0.521073
rsuA1 YP1322 ribosomal small subunit pseudouridine synthase Achromosome CDS1449863 708 - 0.519774
rsuA2 YP1770 putative pseudouridine synthasechromosome CDS1961708 627 - 0.492823
rsuA3 YP2010 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthaseschromosome CDS2232350 1035 + 0.510145
sUA5A YP0244 Putative translation factor (SUA5)chromosome CDS242450 573 + 0.467714
sUA5B YP2009 Putative translation factor (SUA5)chromosome CDS2231400 621 + 0.460548
sUI1 YP2027 translation initiation factor SUI1 familyproteinchromosome CDS2250401 327 + 0.477064
serS YP1214 seryl-tRNA synthetasechromosome CDS1322053 1293 - 0.491106
smpA YP1052 conserved hypothetical proteinchromosome CDS1135075 351 + 0.45584
speG YP2698 spermidine acetyltransferasechromosome CDS2987542 546 + 0.39011
spoU YP0537 putative methylasechromosome CDS577916 741 + 0.538462
srmB1 YP0973 Superfamily II DNA and RNA helicaseschromosome CDS1047128 1413 - 0.515216
srmB2 YP2512 ATP-dependent RNA helicasechromosome CDS2782536 1326 - 0.505279
sun YP0238 tRNA and rRNA cytosine-C5-methylaseschromosome CDS237300 1308 - 0.458716
tccC1 YP3871 putative toxin subunitchromosome CDS4400692 2832 + 0.481992
tdcF1 YP1799 YjgF-family lipoproteinchromosome CDS1996392 408 - 0.426471
tdcF2 YP1913 Putative translation initiation inhibitorchromosome CDS2132352 345 - 0.486957
tdcF3 YP2944 putative translational inhibitor proteinchromosome CDS3280906 381 + 0.354331
tdcF4 YP2945 putative translational inhibitor proteinchromosome CDS3281571 405 + 0.511111
tdcF5 YP3844 Putative translation initiation inhibitorchromosome CDS4369582 426 + 0.476526
tgt YP0740 queuine tRNA-ribosyltransferasechromosome CDS801787 1125 + 0.490667
thrS YP2221 threonyl-tRNA synthetasechromosome CDS2469732 1929 - 0.473302
trmA1 YP1257 putative RNA methyltransferasechromosome CDS1371718 1131 - 0.521662
trmA2 YP3137 tRNA (uracil-5)-methyltransferasechromosome CDS3496414 1104 - 0.477355
trmD YP0393 tRNA (guanine-N1)-methyltransferasechromosome CDS416468 798 + 0.518797
trmH YP0038 tRNA (guanosine-2'-O-)-methyltransferasechromosome CDS49403 693 - 0.496392
trmU YP1768 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS1959967 1116 - 0.499104
trpS YP0159 tryptophanyl-tRNA synthetasechromosome CDS171765 960 + 0.482292
truA YP2398 pseudouridylate synthase Ichromosome CDS2666072 882 - 0.50907
truB YP0589 tRNA pseudouridine synthase Bchromosome CDS630051 975 + 0.494359
tsf YP2806 elongation factor Tschromosome CDS3116009 858 - 0.480186
tufA YP3117 elongation factor Tuchromosome CDS3469761 1185 - 0.478481
tufA1 YP0202 elongation factor Tuchromosome CDS217174 1185 + 0.481857
tyrS YP2155 tyrosine tRNA synthetasechromosome CDS2398334 1287 - 0.487956
valS YP0641 valyl-tRNA synthetasechromosome CDS682583 2898 - 0.519669
wcaG9 YP2207 probable formyl transferasechromosome CDS2456398 2004 - 0.457086
yfiF YP0662 putative tRNA/rRNA methyltransferasechromosome CDS715932 1182 + 0.532995
yhbH YP3838 chromosome pseudo4365532 174 + 0.385057