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2024-05-15 01:24:08

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 178

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Saccharophagus degradans 2-40, 2-40
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Sde_3714 pseudouridine synthase, Rsuchromosome CDS4701025 750 + 0.476
NA Sde_2551 Glycosyl transferase, family 19chromosome CDS3236245 966 - 0.49793
NA Sde_3308 leucyl-tRNA synthetasechromosome CDS4218800 2460 + 0.514634
NA Sde_3163 ribosomal protein S9chromosome CDS4040522 393 - 0.470738
NA Sde_0960 Excinuclease ABC, A subunitchromosome CDS1244962 645 + 0.488372
NA Sde_2594 ribosome recycling factorchromosome CDS3289509 564 - 0.455674
NA Sde_3916 regulatory protein, DeoRchromosome CDS4936462 789 - 0.503169
NA Sde_3331 conserved hypothetical proteinchromosome CDS4258185 1440 - 0.479861
NA Sde_1512 conserved hypothetical proteinchromosome CDS1952372 621 - 0.407407
NA Sde_1476 DEAD/DEAH box helicase-likechromosome CDS1898340 531 + 0.485876
NA Sde_4016 conserved hypothetical proteinchromosome CDS5056627 408 - 0.455882
NA Sde_1130 putative tRNA/rRNA methyltransferasechromosome CDS1466591 534 - 0.464419
NA Sde_2721 ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS3449502 621 - 0.470209
NA Sde_3679 50S ribosomal subunit protein L28chromosome CDS4663497 237 + 0.451477
NA Sde_2519 peptide chain release factor RF-3chromosome CDS3190653 1584 - 0.460859
NA Sde_0972 30S ribosomal protein S14chromosome CDS1250998 306 + 0.486928
NA Sde_3698 Peptidase S1C, Dochromosome CDS4683654 384 + 0.421875
NA Sde_0532 ribosomal subunit interface proteinchromosome CDS654396 357 - 0.478992
NA Sde_1579 50S ribosomal protein L35chromosome CDS2029928 195 + 0.451282
NA Sde_0928 translation elongation factor EF-G, GTPasechromosome CDS1197399 2106 + 0.498101
NA Sde_0929 elongation factor EF-Tuchromosome CDS1199589 1224 + 0.474673
NA Sde_1203 ribosomal protein S16chromosome CDS1548771 249 + 0.485944
NA Sde_1616 tRNA (uracil-5-)-methyltransferasechromosome CDS2077692 1098 - 0.43898
NA Sde_3816 Peptidase S26A, signal peptidase Ichromosome CDS4819058 558 - 0.501792
NA Sde_0126 hypothetical RNA methyltransferasechromosome CDS157733 1227 + 0.539527
NA Sde_1677 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS2145011 1143 - 0.515311
NA Sde_1496 glutamyl-tRNA synthetasechromosome CDS1927352 1512 + 0.496032
NA Sde_1903 Cysteine--tRNA ligasechromosome CDS2404266 1380 + 0.468841
NA Sde_0013 Glycine--tRNA ligasechromosome CDS15577 957 - 0.507837
NA Sde_2705 ribosomal protein S15chromosome CDS3432592 270 - 0.448148
NA Sde_0546 D-Tyr-tRNA(Tyr) deacylasechromosome CDS666796 438 - 0.472603
NA Sde_0978 Glutamate 5-kinase, ProB-relatedchromosome CDS1253468 435 + 0.434483
NA Sde_1216 tRNA pseudouridine synthase D, TruDchromosome CDS1563056 1044 + 0.500958
NA Sde_1719 conserved hypothetical proteinchromosome CDS2192502 624 + 0.498397
NA Sde_1059 transcriptional regulator, GntR familychromosome CDS1358504 459 + 0.459695
NA Sde_1711 von Willebrand factor, type Achromosome CDS2186554 771 - 0.474708
NA Sde_0525 hydrogenase regulation HoxXchromosome CDS648310 1698 + 0.46702
NA Sde_2398 Methionine--tRNA ligasechromosome CDS3040511 2034 + 0.484759
NA Sde_2722 RNA-binding protein containing KH domain possibly ribosomal protein-likechromosome CDS3450221 372 + 0.456989
NA Sde_0927 ribosomal protein S7chromosome CDS1196767 471 + 0.462845
NA Sde_1683 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthaseschromosome CDS2150854 642 - 0.461059
NA Sde_0810 UDP-N-acetylmuramyl-tripeptide synthetasechromosome CDS1056421 879 - 0.521047
NA Sde_1206 ribosomal protein L19chromosome CDS1550552 357 + 0.462185
NA Sde_0977 50S ribosomal protein L30chromosome CDS1253281 186 + 0.419355
NA Sde_1914 Copper-resistance protein CopAchromosome CDS2415304 630 + 0.452381
NA Sde_2708 SmpB proteinchromosome CDS3434391 2727 - 0.484048
NA Sde_1581 Phenylalanine--tRNA ligasechromosome CDS2030703 1014 + 0.465483
NA Sde_0930 Ribosomal protein L2chromosome CDS1200991 2094 - 0.493314
NA Sde_2081 Pseudouridylate synthasechromosome CDS2661321 870 - 0.502299
NA Sde_1651 Isocitrate dehydrogenase NADP-dependent, monomeric typechromosome CDS2119485 645 - 0.489922
NA Sde_1918 16S RNA G1207 methylase RsmC-likechromosome CDS2418867 1086 - 0.406077
NA Sde_2129 Methionyl-tRNA formyltransferase-likechromosome CDS2718447 924 - 0.395022
NA Sde_2379 Arginine--tRNA ligasechromosome CDS3016801 1740 + 0.485057
NA Sde_1626 Malate dehydrogenase, NAD or NADPchromosome CDS2090651 183 + 0.502732
NA Sde_1009 Rhs element Vgr proteinchromosome CDS1290773 258 + 0.465116
NA Sde_1580 Glutamate racemasechromosome CDS2030160 360 + 0.483333
NA Sde_3086 histidine kinasechromosome CDS3939112 276 - 0.394928
NA Sde_3625 putative heat shock proteinchromosome CDS4598165 387 + 0.509044
NA Sde_1509 DNA topoisomerase IIIchromosome CDS1948021 1197 + 0.455305
NA Sde_2032 Ammonium transporterchromosome CDS2560835 906 + 0.493377
NA Sde_3193 Sec-independent periplasmic protein translocasechromosome CDS4070591 282 + 0.485816
NA Sde_0976 Ribosomal protein L27chromosome CDS1252727 513 + 0.465887
NA Sde_2707 ribosome-binding factor Achromosome CDS3433973 387 - 0.49354
NA Sde_0983 response regulator receiver domain protein (CheY-like)chromosome CDS1256471 621 + 0.450886
NA Sde_1055 Tyrosyl-tRNA synthetase, class Ibchromosome CDS1355883 747 + 0.488621
NA Sde_0742 Transaldolase ABchromosome CDS958648 693 + 0.53824
NA Sde_0332 putative peptide chain release factorchromosome CDS415508 747 + 0.465863
NA Sde_3711 putative ATP-dependent RNA helicasechromosome CDS4698398 1311 - 0.460717
NA Sde_3200 Dystroglycan-type cadherin-likechromosome CDS4076735 1551 - 0.510638
NA Sde_0923 ribosomal protein L7/L12chromosome CDS1187077 381 + 0.459318
NA Sde_1751 ribosome modulation factorchromosome CDS2234058 207 - 0.497585
NA Sde_1582 Phenylalanine--tRNA ligasechromosome CDS2031764 2451 + 0.473684
NA Sde_2597 response regulator receiver domain protein (CheY-like)chromosome CDS3291978 741 - 0.446694
NA Sde_1406 Queuine tRNA-ribosyltransferasechromosome CDS1821968 1125 + 0.492444
NA Sde_3250 protein methyltransferase hemKchromosome CDS4147869 867 - 0.477509
NA Sde_3376 poly(A) polymerasechromosome CDS4305690 1332 + 0.526276
NA Sde_0970 ribosomal protein L24chromosome CDS1250096 318 + 0.418239
NA Sde_1128 amidase family proteinchromosome CDS1463570 1797 + 0.494713
NA Sde_1217 Protein-L-isoaspartate(D-aspartate)O-methyltrans ferasechromosome CDS1564187 1509 + 0.46786
NA Sde_0921 transcriptional regulator, GntR familychromosome CDS1185507 696 + 0.435345
NA Sde_1057 Na+/solute symporterchromosome CDS1357706 459 + 0.490196
NA Sde_2003 tRNA (guanosine-2'-O-)-methyltransferasechromosome CDS2520006 675 - 0.477037
NA Sde_0980 Ribosomal protein S20pchromosome CDS1255297 117 + 0.410256
NA Sde_1058 30S ribosomal protein S18chromosome CDS1358167 228 + 0.438596
NA Sde_1205 DJ-1chromosome CDS1549661 840 + 0.489286
NA Sde_1405 Small GTP-binding protein domainchromosome CDS1820919 1053 + 0.493827
NA Sde_4017 ribosomal protein L34chromosome CDS5057066 135 - 0.496296
NA Sde_1008 50S ribosomal protein L21chromosome CDS1290439 312 + 0.461538
NA Sde_0959 Phosphoenolpyruvate carboxykinase (ATP)chromosome CDS1244548 312 + 0.445513
NA Sde_0913 aspartyl-tRNA synthetasechromosome CDS1177409 1785 + 0.468908
NA Sde_3683 tRNA nucleotidyltransferasechromosome CDS4665499 720 - 0.513889
NA Sde_0926 Ribosomal protein S10chromosome CDS1196283 372 + 0.47043
NA Sde_0620 ATP-dependent RNA helicase RhlBchromosome CDS783386 1179 + 0.49279
NA Sde_1435 Histidine--tRNA ligasechromosome CDS1853884 1272 + 0.485063
NA Sde_0967 UTP--glucose-1-phosphate uridylyltransferasechromosome CDS1248769 414 + 0.466184
NA Sde_1411 RNA methyltransferase, TrmH family, group 1chromosome CDS1829753 804 + 0.495025
NA Sde_3088 hypothetical proteinchromosome CDS3940593 540 - 0.361111
NA Sde_3680 50S ribosomal protein L33chromosome CDS4663762 156 + 0.410256
NA Sde_3346 Ketopantoate hydroxymethyltransferasechromosome CDS4274048 1005 - 0.504478
NA Sde_1369 valyl-tRNA synthetasechromosome CDS1770446 2769 - 0.490791
NA Sde_2339 hypothetical proteinchromosome CDS2963258 345 - 0.426087
NA Sde_3469 tRNA/rRNA methyltransferase (SpoU) family proteinchromosome CDS4411424 486 - 0.40535
NA Sde_2114 Chorismate mutase, gamma, beta and epsilonchromosome CDS2701453 1461 - 0.468857
NA Sde_1299 Phosphoserine aminotransferase, Methanosarcina typechromosome CDS1687182 2628 + 0.475647
NA Sde_0962 50S ribosomal protein L23chromosome CDS1246238 297 + 0.390572
NA Sde_1013 ribosomal protein S20pchromosome CDS1294810 267 - 0.494382
NA Sde_1577 Peptidase S16, ATP-dependent protease Lachromosome CDS2027077 1911 + 0.467818
NA Sde_3194 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS4070979 1455 + 0.52921
NA Sde_1688 chromosome segregation and condensation protein ScpBchromosome CDS2157406 219 - 0.429224
NA Sde_3188 ribonuclease G (cytoplasmic axial filament protein)chromosome CDS4065734 1479 - 0.504395
NA Sde_1619 DNA polymerase III delta prime subunitchromosome CDS2080750 2907 - 0.503612
NA Sde_2596 translation elongation factor Tschromosome CDS3290937 873 - 0.463918
NA Sde_0965 ribosomal protein L22chromosome CDS1247711 333 + 0.471471
NA Sde_3257 50S ribosomal protein L25chromosome CDS4155881 633 + 0.469194
NA Sde_2704 Polyribonucleotide nucleotidyltransferasechromosome CDS3430224 2169 - 0.458737
NA Sde_2693 50S ribosomal protein L31chromosome CDS3418987 213 - 0.422535
NA Sde_0973 30S ribosomal protein S8chromosome CDS1251332 393 + 0.452926
NA Sde_0647 putative ATP-dependent RNA helicase DbpAchromosome CDS816509 1395 + 0.475986
NA Sde_2092 Site-specific DNA-methyltransferase (adenine-specific)chromosome CDS2676482 903 - 0.48062
NA Sde_3418 conserved hypothetical proteinchromosome CDS4349136 534 - 0.473783
NA Sde_1578 Histone-like DNA-binding proteinchromosome CDS2029145 549 + 0.449909
NA Sde_0020 methionyl-tRNA formyltransferasechromosome CDS23650 969 - 0.525284
NA Sde_2915 glutathione synthasechromosome CDS3697687 1461 - 0.451745
NA Sde_1088 Tyrosine--tRNA ligasechromosome CDS1390931 1305 + 0.47433
NA Sde_0969 ribosomal protein L14chromosome CDS1249694 369 + 0.466125
NA Sde_0975 Ribosomal protein L21chromosome CDS1252366 351 + 0.48433
NA Sde_2137 Flagellar biosynthesis protein FliRchromosome CDS2727323 1683 - 0.452763
NA Sde_3373 Glutamate--tRNA ligasechromosome CDS4299318 897 + 0.539576
NA Sde_0974 ribosomal protein L6chromosome CDS1251763 534 + 0.43633
NA Sde_0961 regulatory protein, LuxRchromosome CDS1245627 615 + 0.465041
NA Sde_0920 Parallel beta-helix repeatchromosome CDS1185074 432 + 0.467593
NA Sde_0985 Glucokinasechromosome CDS1258184 399 + 0.451128
NA Sde_0981 Ricin B lectinchromosome CDS1255660 357 + 0.47619
NA Sde_0968 ribosomal protein S17chromosome CDS1249390 267 + 0.434457
NA Sde_2668 tRNA isopentenyltransferasechromosome CDS3383445 1011 - 0.489614
NA Sde_0982 histidine kinasechromosome CDS1256063 396 + 0.469697
NA Sde_0019 Sun proteinchromosome CDS22285 1338 - 0.513453
NA Sde_1919 Heavy metal translocating P-type ATPasechromosome CDS2419952 729 - 0.432099
NA Sde_1082 Forkhead-associatedchromosome CDS1384933 570 + 0.496491
NA Sde_0021 Peptide deformylasechromosome CDS24696 519 - 0.473988
NA Sde_1083 serine/threonine protein kinasechromosome CDS1385578 978 + 0.503067
NA Sde_2821 putative elongation factor P family proteinchromosome CDS3558852 567 - 0.446208
NA Sde_3034 ATP-dependent RNA helicase DeaDchromosome CDS3875326 1788 + 0.501119
NA Sde_1902 Heavy metal translocating P-type ATPasechromosome CDS2402435 1773 + 0.467005
NA Sde_0012 Glycine--tRNA ligasechromosome CDS13508 2073 - 0.482875
NA Sde_0909 Pectate lyase/Amb allergenchromosome CDS1173752 1728 - 0.499421
NA Sde_2566 isoleucyl-tRNA synthetasechromosome CDS3254713 2799 - 0.476956
NA Sde_3251 peptide chain release factor 1chromosome CDS4148728 1083 - 0.480148
NA Sde_3164 ribosomal protein L13chromosome CDS4040928 429 - 0.4662
NA Sde_0719 Glutamine amidotransferase of anthranilate synthasechromosome CDS930612 216 - 0.449074
NA Sde_3258 Aminoacyl-tRNA hydrolasechromosome CDS4156606 594 + 0.538721
NA Sde_2321 putative methionine aminopeptidase, MAPchromosome CDS2948996 774 - 0.47416
NA Sde_1338 ribonuclease Dchromosome CDS1733684 1161 + 0.432386
NA Sde_0727 Peptidase M, neutral zinc metallopeptidases, zinc-binding sitechromosome CDS939658 1290 - 0.509302
NA Sde_3195 Glu-tRNA(Gln) amidotransferase subunit Bchromosome CDS4072445 1443 + 0.513514
NA Sde_2737 Small protein A (tmRNA-binding)-likechromosome CDS3467454 396 + 0.449495
NA Sde_3300 bifunctional enzyme involved in thiolation and methylation of tRNAchromosome CDS4210403 1365 + 0.511355
NA Sde_2228 Tryptophan--tRNA ligasechromosome CDS2831722 1005 - 0.447761
NA Sde_2706 Pseudouridylate synthasechromosome CDS3433028 942 - 0.491507
NA Sde_0737 HAD-superfamily hydrolase subfamily IA, variant 3chromosome CDS951541 807 - 0.503098
NA Sde_0024 conserved hypothetical proteinchromosome CDS28140 576 + 0.513889
NA Sde_2580 translation initiation factor, Sui1 family-likechromosome CDS3275986 324 + 0.478395
NA Sde_0397 ribosomal protein serine acetyltransferasechromosome CDS492538 735 - 0.548299
NA Sde_0964 ribosomal protein S19chromosome CDS1247409 276 + 0.485507
NA Sde_2601 Sugar transporterchromosome CDS3298671 777 + 0.50193
NA Sde_0931 Ribosomal protein S19chromosome CDS1203474 1224 + 0.473856
NA Sde_1722 pseudouridine synthase, Rsuchromosome CDS2195465 1197 + 0.502089
NA Sde_3201 conserved hypothetical proteinchromosome CDS4078396 414 + 0.478261
NA Sde_0963 Single-strand binding proteinchromosome CDS1246548 828 + 0.478261
NA Sde_0966 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabAchromosome CDS1248056 675 + 0.463704
NA Sde_3501 conserved hypothetical proteinchromosome CDS4456960 399 - 0.451128
NA Sde_1204 16S rRNA processing protein RimMchromosome CDS1549032 552 + 0.445652
NA Sde_0971 ribosomal protein L5chromosome CDS1250520 465 + 0.432258
NA Sde_3635 response regulator receiver domain protein (CheY-like)chromosome CDS4613060 954 + 0.491614
NA Sde_1697 seryl-tRNA synthetasechromosome CDS2168232 1281 + 0.458236
NA Sde_0782 ribosomal large subunit pseudouridine synthase Fchromosome CDS1011827 975 - 0.471795
NA Sde_0922 50S ribosomal protein L10chromosome CDS1186486 531 + 0.47081
NA Sde_1620 Pseudouridylate synthasechromosome CDS2084805 966 + 0.508282