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2024-05-19 08:30:01

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 217

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Hahella chejuensis KCTC 2396, KCTC 2396
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA HCH_01358 predicted rRNA methylase (SpoU class)chromosome CDS1367330 465 - 0.556989
NA HCH_00211 translation elongation factor P (EF-P)chromosome CDS221738 570 - 0.519298
NA HCH_04961 hypothetical proteinchromosome CDS5097384 540 - 0.559259
NA HCH_04268 conserved hypothetical proteinchromosome CDS4411298 543 - 0.517495
NA HCH_02653 conserved hypothetical proteinchromosome CDS2720014 810 + 0.538272
NA HCH_06312 putative translation initiation inhibitor, yjgF familychromosome CDS6451176 387 - 0.54522
NA HCH_04355 predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta familychromosome CDS4501305 1026 - 0.589669
NA HCH_01975 conserved hypothetical proteinchromosome CDS2015103 333 + 0.510511
NA HCH_04940 Cytosine/adenosine deaminaseschromosome CDS5069737 471 - 0.600849
NA HCH_04099 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)chromosome CDS4245589 1089 - 0.586777
NA HCH_00129 RNA:NAD 2'-phosphotransferasechromosome CDS142086 561 - 0.593583
NA HCH_04661 Pseudouridylate synthases, 23S RNA-specificchromosome CDS4786386 675 + 0.568889
NA HCH_03648 Translation elongation factors (GTPase)chromosome CDS3791829 2055 - 0.579075
NA HCH_05401 GTPase-translation elongation factorschromosome CDS5537742 1803 + 0.545757
NA HCH_04464 rRNA methylasechromosome CDS4593625 774 - 0.521964
NA HCH_03899 hypothetical proteinchromosome CDS4038240 915 + 0.394536
NA HCH_05109 conserved hypothetical proteinchromosome CDS5264522 3444 + 0.552555
NA HCH_06009 tRNA-dihydrouridine synthasechromosome CDS6147015 1011 + 0.529179
NA HCH_06180 nucleoside-diphosphate-sugar pyrophosphorylasechromosome CDS6321900 762 + 0.562992
NA HCH_04579 Translation initiation factor 3 (IF-3)chromosome CDS4696635 411 - 0.506083
NA HCH_04234 hypothetical proteinchromosome CDS4371614 975 - 0.56
NA HCH_05159 hypothetical proteinchromosome CDS5307843 651 + 0.548387
NA HCH_04259 putative translation initiation inhibitor, yjgF familychromosome CDS4403898 387 + 0.54522
NA HCH_00778 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)chromosome CDS772185 912 - 0.578947
NA HCH_06624 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidaseschromosome CDS6744065 1542 - 0.605058
NA HCH_05736 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidaseschromosome CDS5852302 1701 + 0.613169
NA HCH_00563 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)chromosome CDS575322 414 - 0.555556
NA HCH_04642 FOG: TPR repeatchromosome CDS4765546 3396 + 0.548587
NA HCH_05004 putative translation factor (SUA5)chromosome CDS5146998 618 - 0.574434
NA HCH_02420 Methylase of polypeptide chain release factorschromosome CDS2473509 906 + 0.548565
NA HCH_02721 conserved hypothetical proteinchromosome CDS2790635 1374 + 0.473799
NA HCH_06845 conserved hypothetical proteinchromosome CDS6956445 543 - 0.598527
NA HCH_04206 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS4345992 540 + 0.511111
NA HCH_06421 conserved hypothetical proteinchromosome CDS6556597 198 - 0.565657
NA HCH_01121 histidyl-tRNA synthetase-related proteinchromosome CDS1120814 630 + 0.528571
NA HCH_03967 tRNA nucleotidyltransferase/poly(A) polymerasechromosome CDS4112353 681 - 0.565345
NA HCH_01614 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS1623236 561 + 0.561497
NA HCH_04674 hypothetical proteinchromosome CDS4802782 1845 + 0.566938
NA HCH_02608 predicted rRNA methylasechromosome CDS2677971 810 - 0.548148
NA HCH_05330 Ribonucleases G and Echromosome CDS5470126 1485 - 0.523232
NA HCH_04245 conserved hypothetical proteinchromosome CDS4388448 978 - 0.529652
NA HCH_07005 tRNA nucleotidyltransferase/poly(A) polymerasechromosome CDS7116646 1140 + 0.588596
NA HCH_02999 Methionine aminopeptidasechromosome CDS3101902 867 + 0.491349
NA HCH_07060 uncharacterized protein conserved in bacteriachromosome CDS7183473 468 - 0.504274
NA HCH_04705 Superfamily II DNA and RNA helicasechromosome CDS4836360 1362 + 0.566079
NA HCH_04844 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS4988203 519 + 0.531792
NA HCH_01087 hypothetical proteinchromosome CDS1085804 1308 + 0.56422
NA HCH_03217 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisinchromosome CDS3316648 828 + 0.557971
NA HCH_05157 hypothetical proteinchromosome CDS5305839 675 + 0.53037
NA HCH_00477 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS490165 528 + 0.577652
NA HCH_00188 Translation initiation factor 1 (eIF-1/SUI1) and related proteinchromosome CDS200618 363 - 0.5427
NA HCH_01722 predicted GTPase, probable translation factorchromosome CDS1748351 1092 - 0.539377
NA HCH_05322 Ribosome-associated protein Y (PSrp-1)chromosome CDS5461041 309 + 0.475728
NA HCH_00200 hypothetical proteinchromosome CDS211238 408 + 0.551471
NA HCH_02610 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)chromosome CDS2680098 1473 + 0.514596
NA HCH_04739 tryptophanyl-tRNA synthetase-related proteinchromosome CDS4872663 1176 - 0.556973
NA HCH_01515 predicted exonuclease of the beta-lactamase fold involved in RNA processingchromosome CDS1513931 1362 - 0.573421
NA HCH_06648 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit Dchromosome CDS6767621 1026 + 0.55848
NA HCH_02938 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS3007228 531 + 0.544256
NA HCH_05780 Pseudouridylate synthases, 23S RNA-specificchromosome CDS5896367 747 - 0.550201
NA HCH_05756 Superfamily II DNA and RNA helicasechromosome CDS5875626 1782 - 0.561728
NA HCH_05920 Pseudouridylate synthases, 23S RNA-specificchromosome CDS6050120 960 - 0.530208
NA HCH_00926 conserved hypothetical proteinchromosome CDS922723 378 - 0.515873
NA HCH_06257 glutamyl-tRNA synthetase-related proteinchromosome CDS6393903 906 + 0.572848
NA HCH_05630 conserved hypothetical proteinchromosome CDS5746438 1143 - 0.426072
NA HCH_00033 putative translation factor (SUA5)chromosome CDS38777 555 + 0.572973
NA HCH_04390 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS4528702 513 - 0.532164
NA HCH_02991 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS3099017 576 - 0.527778
NA HCH_05434 Acetyltransferase, including N-acetylases of ribosomal proteinchromosome CDS5574023 555 - 0.576577
NA HCH_06728 hypothetical proteinchromosome CDS6846501 318 - 0.455975
NA HCH_01230 predicted RNA-binding protein containing KH domain, possibly ribosomal proteinchromosome CDS1242681 324 - 0.512346
NA HCH_01561 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidaseschromosome CDS1566185 1311 - 0.570557
NA HCH_02353 tRNA-dihydrouridine synthasechromosome CDS2414330 1050 - 0.52
NA HCH_02919 conserved hypothetical proteinchromosome CDS2993431 1197 + 0.548037
NA HCH_00408 Protein chain release factor Bchromosome CDS418099 420 + 0.578571
NA HCH_05901 Ribosomal protein S9chromosome CDS6023478 393 - 0.501272
NA HCH_05398 Truncated, possibly inactive, lysyl-tRNA synthetase (class II)chromosome CDS5534707 957 - 0.568443
NA HCH_04706 Superfamily II DNA and RNA helicasechromosome CDS4837780 1482 - 0.544534
NA HCH_06109 nucleoside-diphosphate-sugar pyrophosphorylasechromosome CDS6247172 690 + 0.557971
NA HCH_05339 2-methylthioadenine synthetasechromosome CDS5478404 1320 - 0.523485
NA HCH_04736 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthaseschromosome CDS4870156 972 - 0.582305
NA HCH_03779 hypothetical proteinchromosome CDS3910077 300 - 0.406667
NA HCH_05723 hypothetical proteinchromosome CDS5838480 390 + 0.505128
NA HCH_06262 tRNA nucleotidyltransferase/poly(A) polymerasechromosome CDS6400477 1374 + 0.555313
NA HCH_03717 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)chromosome CDS3862034 915 + 0.597814
NA HCH_02009 putative translation initiation inhibitor, yjgF familychromosome CDS2048222 402 + 0.584577
NA HCH_05673 conserved hypothetical proteinchromosome CDS5793876 513 - 0.612086
alaS HCH_05209 alanyl-tRNA synthetasechromosome CDS5353116 2631 - 0.540099
argS HCH_01116 arginyl-tRNA synthetasechromosome CDS1115135 1737 + 0.554404
asnS HCH_02239 asparaginyl-tRNA synthetasechromosome CDS2312302 1398 + 0.564378
aspS HCH_04927 aspartyl-tRNA synthetasechromosome CDS5056246 1773 - 0.549915
cca HCH_01366 tRNA nucleotidyltransferasechromosome CDS1373540 1269 - 0.603625
cysS HCH_02154 cysteinyl-tRNA synthetasechromosome CDS2205808 1404 + 0.512821
def HCH_00030 peptide deformylasechromosome CDS35761 507 - 0.52071
dtd HCH_01039 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS1042065 441 + 0.480726
efp HCH_05399 translation elongation factor Pchromosome CDS5535770 573 - 0.544503
fmt HCH_00029 methionyl-tRNA formyltransferasechromosome CDS34736 957 - 0.578892
frr HCH_05249 ribosome recycling factorchromosome CDS5393236 558 - 0.487455
ftsJ HCH_01231 23S rRNA methylasechromosome CDS1243133 621 + 0.495974
fusA1 HCH_06220 translation elongation factor Gchromosome CDS6346895 2100 - 0.487143
fusA2 HCH_06988 translation elongation factor Gchromosome CDS7101709 2037 - 0.572901
gatA HCH_05337 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS5475398 1455 + 0.556701
gatB HCH_05338 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS5476905 1443 + 0.531532
gatC HCH_05336 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS5474933 393 + 0.53944
glnS HCH_02153 glutaminyl-tRNA synthetasechromosome CDS2204066 1689 + 0.499704
gltX HCH_02111 glutamyl-tRNA synthetasechromosome CDS2158887 1506 + 0.51328
glyQ HCH_00022 Glycyl-tRNA synthetase, alpha subunitchromosome CDS25557 948 - 0.560127
glyS HCH_00021 Glycyl-tRNA synthetase, beta subunitchromosome CDS23474 2079 - 0.578644
gshB HCH_00547 glutathione synthetasechromosome CDS561158 969 + 0.531476
hemK HCH_01734 Methylase of polypeptide chain release factorschromosome CDS1758386 831 + 0.593261
hisS HCH_04455 histidyl-tRNA synthetasechromosome CDS4584752 1275 - 0.531765
ileS HCH_05933 isoleucyl-tRNA synthetasechromosome CDS6067189 2826 - 0.519462
infA HCH_02340 translation initiation factor IF-1chromosome CDS2404005 219 - 0.461187
infB HCH_01239 translation initiation factor IF-2chromosome CDS1251650 2586 + 0.500773
ksgA HCH_06103 dimethyladenosine transferasechromosome CDS6238999 822 - 0.560827
leuS HCH_05355 leucyl-tRNA synthetasechromosome CDS5492427 2586 + 0.537123
ligT HCH_01914 2'-5' RNA ligasechromosome CDS1944722 579 - 0.544041
lysS HCH_01783 lysyl-tRNA synthetasechromosome CDS1808616 1524 + 0.51706
map1 HCH_03504 methionine aminopeptidase, type Ichromosome CDS3655463 756 - 0.537037
map2 HCH_05254 methionine aminopeptidase, type Ichromosome CDS5396739 771 + 0.501945
miaA1 HCH_02227 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS2297521 912 + 0.577851
miaA2 HCH_05384 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS5519679 999 - 0.537538
miaB HCH_05348 tRNA-i(6)A37 thiotransferase enzyme MiaBchromosome CDS5486347 1341 + 0.545861
miaE HCH_02150 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNAchromosome CDS2201978 609 + 0.490969
pheS HCH_04575 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS4694919 996 - 0.506024
pnp HCH_01244 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)chromosome CDS1256303 2112 + 0.496212
prfA HCH_01733 peptide chain release factor 1chromosome CDS1757281 1083 + 0.535549
prfB HCH_01782 peptide chain release factor 2chromosome CDS1807639 906 + 0.532009
prfC HCH_05904 peptide chain release factor 3chromosome CDS6025334 1578 - 0.492395
prmA HCH_06007 ribosomal protein L11 methyltransferasechromosome CDS6144305 879 + 0.577929
proS HCH_04773 prolyl-tRNA synthetasechromosome CDS4908321 1725 + 0.561739
pth HCH_01723 peptidyl-tRNA hydrolasechromosome CDS1749684 588 - 0.552721
queA HCH_04470 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS4600001 1056 - 0.559659
rbfA HCH_01240 ribosome-binding factor Achromosome CDS1254292 408 + 0.485294
rhlB HCH_02291 ATP-dependent RNA helicasechromosome CDS2354853 1182 + 0.563452
rimK HCH_05732 ribosomal protein S6 modification proteinchromosome CDS5846104 825 + 0.550303
rimM HCH_01773 16S rRNA processing protein RimMchromosome CDS1797383 522 + 0.475096
rluA1 HCH_02061 Pseudouridylate synthases, 23S RNA-specificchromosome CDS2103827 696 + 0.551724
rluA2 HCH_02226 Pseudouridylate synthases, 23S RNA-specificchromosome CDS2296179 894 + 0.608501
rluC HCH_02136 Pseudouridylate synthases, 23S RNA-specificchromosome CDS2189078 948 + 0.507384
rmf HCH_10018 Ribosome modulation factorchromosome CDS5102051 210 + 0.557143
rnd HCH_02616 ribonuclease Dchromosome CDS2685157 1197 + 0.553885
rne HCH_02135 Ribonucleases G and Echromosome CDS2185357 3171 - 0.552507
rnpA HCH_10034 ribonuclease P protein componentchromosome CDS7214197 294 - 0.42517
rph HCH_06338 ribonuclease PHchromosome CDS6478197 717 + 0.564854
rplA HCH_06227 ribosomal protein L1chromosome CDS6359784 699 - 0.474964
rplB HCH_06214 ribosomal protein L2chromosome CDS6342696 825 - 0.515152
rplC HCH_06217 Ribosomal protein L3chromosome CDS6344448 639 - 0.499218
rplD HCH_06216 Ribosomal protein L4chromosome CDS6343827 609 - 0.487685
rplE HCH_06205 Ribosomal protein L5chromosome CDS6339197 540 - 0.47037
rplF HCH_06201 Ribosomal protein L6chromosome CDS6337869 534 - 0.492509
rplI HCH_01713 ribosomal protein L9chromosome CDS1739092 447 + 0.496644
rplJ HCH_06226 Ribosomal protein L10chromosome CDS6359058 531 - 0.510358
rplK HCH_06228 ribosomal protein L11chromosome CDS6360486 429 - 0.461538
rplL HCH_06225 ribosomal protein L7/L12chromosome CDS6358647 375 - 0.48
rplM HCH_05902 ribosomal protein L13chromosome CDS6023882 429 - 0.482517
rplN HCH_06207 ribosomal protein L14chromosome CDS6340086 369 - 0.498645
rplO HCH_06198 ribosomal protein L15chromosome CDS6336362 435 - 0.514943
rplP HCH_06210 ribosomal protein L16chromosome CDS6340945 414 - 0.495169
rplQ HCH_06192 ribosomal protein L17chromosome CDS6331904 390 - 0.510256
rplR HCH_06200 ribosomal protein L18chromosome CDS6337509 351 - 0.495726
rplS HCH_01775 ribosomal protein L19chromosome CDS1798685 357 + 0.464986
rplT HCH_04576 ribosomal protein L20chromosome CDS4696008 357 - 0.537815
rplU HCH_05941 ribosomal protein L21chromosome CDS6076211 312 - 0.487179
rplV HCH_06212 ribosomal protein L22chromosome CDS6342064 333 - 0.489489
rplW HCH_06215 Ribosomal protein L23chromosome CDS6343534 297 - 0.464646
rplX HCH_06206 ribosomal protein L24chromosome CDS6339754 318 - 0.471698
rplY HCH_01725 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS1750278 627 - 0.505582
rpmA HCH_05940 ribosomal protein L27chromosome CDS6075921 261 - 0.509579
rpmB HCH_01019 ribosomal protein L28chromosome CDS1017673 237 - 0.451477
rpmC HCH_06209 ribosomal protein L29chromosome CDS6340753 192 - 0.458333
rpmD HCH_10027 ribosomal protein L30chromosome CDS6336798 192 - 0.432292
rpmE HCH_05975 ribosomal protein L31chromosome CDS6113559 360 - 0.463889
rpmF HCH_10002 ribosomal protein L32chromosome CDS2193078 180 + 0.516667
rpmG HCH_01018 ribosomal protein L33chromosome CDS1017506 156 - 0.423077
rpmI HCH_04578 ribosomal protein L35chromosome CDS4696386 192 - 0.473958
rpmJ HCH_10026 ribosomal protein L36chromosome CDS6334869 117 - 0.410256
rpsA HCH_04978 ribosomal protein S1chromosome CDS5115260 1680 - 0.492262
rpsB HCH_05253 ribosomal protein S2chromosome CDS5395613 762 - 0.492126
rpsC HCH_06211 ribosomal protein S3chromosome CDS6341370 684 - 0.476608
rpsD HCH_06194 ribosomal protein S4chromosome CDS6333366 621 - 0.486312
rpsE HCH_06199 ribosomal protein S5chromosome CDS6336993 504 - 0.505952
rpsF HCH_01711 ribosomal protein S6chromosome CDS1738293 429 + 0.526807
rpsG HCH_06221 ribosomal protein S7chromosome CDS6349012 471 - 0.484076
rpsH HCH_06202 Ribosomal protein S8chromosome CDS6338412 393 - 0.478372
rpsJ HCH_06218 ribosomal protein S10chromosome CDS6345179 312 - 0.458333
rpsK HCH_06195 Ribosomal protein S11chromosome CDS6334002 390 - 0.505128
rpsL HCH_06222 ribosomal protein S12chromosome CDS6349570 375 - 0.514667
rpsM HCH_06196 Ribosomal protein S13chromosome CDS6334408 357 - 0.52381
rpsN HCH_06204 Ribosomal protein S14chromosome CDS6338880 306 - 0.509804
rpsO HCH_01243 ribosomal protein S15chromosome CDS1255711 270 + 0.455556
rpsP HCH_01772 ribosomal protein S16chromosome CDS1797008 354 + 0.471751
rpsQ HCH_06208 Ribosomal protein S17chromosome CDS6340485 267 - 0.490637
rpsR HCH_01712 ribosomal protein S18chromosome CDS1738739 231 + 0.510823
rpsS HCH_06213 ribosomal protein S19chromosome CDS6342409 276 - 0.452899
rpsT HCH_05937 ribosomal protein S20chromosome CDS6073070 270 + 0.511111
rpsU HCH_06271 ribosomal protein S21chromosome CDS6408750 216 + 0.486111
rsmC HCH_02224 16S RNA G1207 methylase RsmCchromosome CDS2295164 1029 + 0.586006
rsuA HCH_02335 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthaseschromosome CDS2398214 609 - 0.546798
rumA HCH_01806 23S rRNA (uracil-5-)-methyltransferase RumAchromosome CDS1829821 1341 + 0.540641
serS HCH_02449 seryl-tRNA synthetasechromosome CDS2504317 1284 + 0.562305
smpA HCH_01219 Small protein A (tmRNA-binding)chromosome CDS1229589 603 - 0.456053
spoU HCH_01710 rRNA methylaseschromosome CDS1737450 717 + 0.562064
sun HCH_00028 sun proteinchromosome CDS33391 1344 - 0.56994
tgt HCH_04469 queuine tRNA-ribosyltransferasechromosome CDS4598840 1128 - 0.546986
thrS1 HCH_02794 Threonyl-tRNA synthetasechromosome CDS2888019 1248 + 0.570513
thrS2 HCH_04580 threonyl-tRNA synthetasechromosome CDS4697201 1914 - 0.509927
trmD HCH_01774 tRNA (guanine-N1)-methyltransferasechromosome CDS1797879 777 + 0.485199
trmU HCH_02333 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS2396518 1095 - 0.552511
trpS HCH_02552 tryptophanyl-tRNA synthetasechromosome CDS2615562 1011 + 0.542038
truA HCH_02434 tRNA pseudouridine synthase Achromosome CDS2488807 852 + 0.57277
truB HCH_01241 tRNA pseudouridine synthase Bchromosome CDS1254714 936 + 0.486111
tsf HCH_05252 translation elongation factor Tschromosome CDS5394668 861 - 0.495935
tuf1 HCH_06219 translation elongation factor Tuchromosome CDS6345646 1194 - 0.523451
tuf2 HCH_06231 translation elongation factor Tuchromosome CDS6362038 1194 - 0.520938
tyrS HCH_06238 tyrosyl-tRNA synthetasechromosome CDS6374857 1203 - 0.473815
valS HCH_01928 valyl-tRNA synthetasechromosome CDS1958647 2859 - 0.563484