Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 141
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Porphyromonas gingivalis W83, W83 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | PG0853 | DNA-binding protein, histone-like family | chromosome | CDS | 914524 | 486 | + | 0.547325 |
NA | PG1481 | conjugative transposon protein TraG | chromosome | CDS | 1556012 | 2526 | - | 0.537213 |
NA | PG0086 | ATP-dependent RNA helicase, DEAD/DEAH box family | chromosome | CDS | 100635 | 1815 | - | 0.50303 |
NA | PG0933 | translation elongation factor G, putative | chromosome | CDS | 990137 | 2160 | + | 0.522685 |
NA | PG0241 | lipoprotein, putative | chromosome | CDS | 277450 | 855 | - | 0.472515 |
NA | PG0248 | translation initation factor SUI1, putative | chromosome | CDS | 281600 | 333 | - | 0.522523 |
NA | PG1625 | hypothetical protein | chromosome | CDS | 1707576 | 1203 | + | 0.475478 |
NA | PG0021 | TIM-barrel protein, putative, NifR3 family | chromosome | CDS | 24212 | 1002 | - | 0.52994 |
NA | PG0738 | cytidine/deoxycytidylate deaminase family protein | chromosome | CDS | 786603 | 453 | + | 0.567329 |
NA | PG2221 | MiaB-like tRNA modifying enzyme | chromosome | CDS | 2335566 | 1335 | + | 0.540824 |
NA | PG0840 | hypothetical protein | chromosome | CDS | 898512 | 4032 | + | 0.384673 |
NA | PG0801 | polyA polymerase family protein | chromosome | CDS | 856353 | 1452 | - | 0.492424 |
NA | PG1848 | RNA methyltransferase, TrmH family | chromosome | CDS | 1946723 | 750 | - | 0.517333 |
NA | PG1847 | endoribonuclease L-PSP, putative | chromosome | CDS | 1946317 | 381 | - | 0.472441 |
NA | PG1492 | hypothetical protein | chromosome | CDS | 1566190 | 717 | + | 0.365411 |
NA | PG2099 | ATP-dependent RNA helicase, DEAD/DEAH box family | chromosome | CDS | 2206739 | 1284 | - | 0.560748 |
NA | PG1256 | ribonuclease, Rne/Rng family | chromosome | CDS | 1332838 | 1515 | - | 0.493069 |
NA | PG1903 | conserved hypothetical protein | chromosome | CDS | 2002320 | 1992 | - | 0.520582 |
NA | PG0386 | site-specific recombinase, phage integrase family/ribosomal subunit interface protein | chromosome | CDS | 419187 | 1203 | + | 0.465503 |
NA | PG1095 | RNA methyltransferase, TrmA family | chromosome | CDS | 1160365 | 1398 | + | 0.537196 |
NA | PG1596 | isoleucyl-tRNA synthetase, putative | chromosome | CDS | 1674683 | 3414 | + | 0.52812 |
NA | PG0365 | 3'-5' exonuclease domain protein | chromosome | CDS | 399702 | 567 | - | 0.571429 |
NA | PG0969 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase, putative | chromosome | CDS | 1028291 | 1218 | - | 0.519704 |
NA | PG0495 | hypothetical protein | chromosome | CDS | 535587 | 1410 | + | 0.424113 |
NA | PG1012 | tRNA-i(6)A37 modification enzyme MiaB | chromosome | CDS | 1070179 | 1392 | - | 0.545259 |
NA | PG0286 | hypothetical protein | chromosome | CDS | 320257 | 258 | + | 0.406977 |
NA | PG0048 | conserved hypothetical protein TIGR00092 | chromosome | CDS | 59544 | 1104 | - | 0.497283 |
NA | PG1963 | Sua5/YciO/YrdC/YwlC family protein | chromosome | CDS | 2052478 | 576 | + | 0.572917 |
NA | PG1156 | S4 domain protein | chromosome | CDS | 1236875 | 453 | + | 0.461369 |
NA | PG1745 | phosphoribulokinase family protein | chromosome | CDS | 1829525 | 1590 | - | 0.496226 |
NA | PG0744 | RNA methyltransferase, TrmH family | chromosome | CDS | 791223 | 765 | - | 0.554248 |
NA | PG2152 | DNA-binding protein, histone-like family | chromosome | CDS | 2259890 | 486 | + | 0.547325 |
NA | PG1254 | acetyltransferase, GNAT family | chromosome | CDS | 1331684 | 528 | - | 0.482955 |
NA | PG0150 | conserved hypothetical protein TIGR01125 | chromosome | CDS | 172330 | 1305 | - | 0.550192 |
NA | PG1690 | Sua5/YciO/YrdC/YwlC family protein | chromosome | CDS | 1775261 | 603 | - | 0.545605 |
NA | PG1365 | 16S rRNA processing protein RimM, putative | chromosome | CDS | 1445632 | 528 | - | 0.471591 |
NA | PG1507 | hypothetical protein | chromosome | CDS | 1583760 | 2430 | + | 0.462551 |
NA | PG2101 | hypothetical protein | chromosome | CDS | 2210368 | 996 | - | 0.517068 |
NA | PG1358 | acetyltransferase, GNAT family | chromosome | CDS | 1436743 | 681 | - | 0.424376 |
NA | PG1728 | cytidine/deoxycytidylate deaminase family protein | chromosome | CDS | 1817784 | 453 | + | 0.490066 |
NA | PG0156 | modification methylase, HemK family | chromosome | CDS | 178968 | 882 | + | 0.531746 |
alaS | PG1246 | alanyl-tRNA synthetase | chromosome | CDS | 1321939 | 2631 | + | 0.527176 |
ansA | PG2121 | L-asparaginase | chromosome | CDS | 2228635 | 1080 | - | 0.498148 |
argS | PG0267 | arginyl-tRNA synthetase | chromosome | CDS | 299240 | 1794 | + | 0.48495 |
asnS | PG1121 | asparaginyl-tRNA synthetase | chromosome | CDS | 1196236 | 1410 | - | 0.48156 |
aspS | PG0153 | aspartyl-tRNA synthetase | chromosome | CDS | 175757 | 1764 | - | 0.57483 |
cysS | PG1878 | cysteinyl-tRNA synthetase | chromosome | CDS | 1973068 | 1473 | + | 0.513917 |
def | PG2201 | polypeptide deformylase | chromosome | CDS | 2308933 | 570 | - | 0.52807 |
dtd | PG1994 | D-tyrosyl-tRNA(Tyr) deacylase | chromosome | CDS | 2085267 | 453 | + | 0.494481 |
efp-1 | PG0568 | translation elongation factor P | chromosome | CDS | 624089 | 567 | - | 0.537919 |
efp-2 | PG1274 | translation elongation factor P | chromosome | CDS | 1351983 | 567 | + | 0.54321 |
fmt | PG2023 | methionyl-tRNA formyltransferase | chromosome | CDS | 2117655 | 972 | - | 0.501029 |
frr | PG1901 | ribosome recycling factor | chromosome | CDS | 2000921 | 522 | - | 0.538314 |
fusA | PG1940 | translation elongation factor G | chromosome | CDS | 2025187 | 2124 | - | 0.521186 |
glnS | PG1951 | glutaminyl-tRNA synthetase | chromosome | CDS | 2041282 | 1701 | + | 0.52087 |
gltX | PG1566 | glutamyl-tRNA synthetase | chromosome | CDS | 1645974 | 1518 | - | 0.522398 |
glyS | PG2165 | glycyl-tRNA synthetase | chromosome | CDS | 2270212 | 1548 | - | 0.505814 |
hisS | PG2062 | histidyl-tRNA synthetase | chromosome | CDS | 2159111 | 1365 | + | 0.536264 |
hslR | PG0165 | heat shock protein 15 | chromosome | CDS | 187460 | 438 | - | 0.527397 |
infA | PG1916 | translation initiation factor IF-1 | chromosome | CDS | 2013574 | 219 | - | 0.401826 |
infB | PG0255 | translation initiation factor IF-2 | chromosome | CDS | 286682 | 2940 | + | 0.522109 |
infC | PG0991 | translation initiation factor IF-3 | chromosome | CDS | 1051524 | 606 | - | 0.450495 |
ksgA | PG0135 | dimethyladenosine transferase | chromosome | CDS | 157257 | 777 | - | 0.516088 |
leuS | PG0796 | leucyl-tRNA synthetase | chromosome | CDS | 849763 | 2778 | - | 0.492801 |
lysS | PG1370 | lysyl-tRNA synthetase | chromosome | CDS | 1450583 | 1737 | - | 0.501439 |
map | PG1917 | methionine aminopeptidase, type I | chromosome | CDS | 2013795 | 786 | - | 0.451654 |
miaA-1 | PG0335 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 369894 | 903 | - | 0.554817 |
miaA-2 | PG0522 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 566083 | 909 | - | 0.536854 |
pheS | PG1771 | phenylalanyl-tRNA synthetase, alpha subunit | chromosome | CDS | 1858178 | 1023 | + | 0.518084 |
pnpA | PG0766 | polyribonucleotide nucleotidyltransferase | chromosome | CDS | 816264 | 2232 | - | 0.540771 |
prfA | PG0074 | peptide chain release factor 1 | chromosome | CDS | 88177 | 1086 | - | 0.546961 |
prfC | PG0205 | peptide chain release factor 3 | chromosome | CDS | 240603 | 1581 | - | 0.516129 |
prmA | PG0635 | ribosomal protein L11 methyltransferase | chromosome | CDS | 686928 | 936 | - | 0.494658 |
proS | PG0962 | prolyl-tRNA synthetase | chromosome | CDS | 1022417 | 1482 | - | 0.492578 |
pth | PG0166 | peptidyl-tRNA hydrolase | chromosome | CDS | 187903 | 558 | - | 0.537634 |
queA | PG1540 | S-adenosylmethionine:tRNAribosyltransferase-isom erase | chromosome | CDS | 1619417 | 1053 | + | 0.482431 |
rbfA | PG0923 | ribosome-binding factor A | chromosome | CDS | 982569 | 336 | - | 0.458333 |
rplA | PG0391 | ribosomal protein L1 | chromosome | CDS | 423420 | 699 | + | 0.433476 |
rplB | PG1935 | ribosomal protein L2 | chromosome | CDS | 2022458 | 825 | - | 0.511515 |
rplC | PG1938 | ribosomal protein L3 | chromosome | CDS | 2024226 | 618 | - | 0.487055 |
rplD | PG1937 | ribosomal protein L4 | chromosome | CDS | 2023597 | 630 | - | 0.480952 |
rplE | PG1926 | ribosomal protein L5 | chromosome | CDS | 2018767 | 561 | - | 0.431373 |
rplF | PG1923 | ribosomal protein L6 | chromosome | CDS | 2017480 | 552 | - | 0.451087 |
rplI | PG0597 | ribosomal protein L9 | chromosome | CDS | 653802 | 540 | + | 0.477778 |
rplJ | PG0392 | ribosomal protein L10 | chromosome | CDS | 424134 | 525 | + | 0.438095 |
rplK | PG0390 | ribosomal protein L11 | chromosome | CDS | 422962 | 438 | + | 0.440639 |
rplL | PG0393 | ribosomal protein L7/L12 | chromosome | CDS | 424700 | 378 | + | 0.47619 |
rplM | PG0375 | ribosomal protein L13 | chromosome | CDS | 406074 | 456 | + | 0.495614 |
rplN | PG1928 | ribosomal protein L14 | chromosome | CDS | 2019670 | 366 | - | 0.47541 |
rplO | PG1919 | ribosomal protein L15 | chromosome | CDS | 2015925 | 447 | - | 0.438479 |
rplP | PG1931 | ribosomal protein L16 | chromosome | CDS | 2020505 | 435 | - | 0.457471 |
rplQ | PG1910 | ribosomal protein L17 | chromosome | CDS | 2010372 | 483 | - | 0.455487 |
rplR | PG1922 | ribosomal protein L18 | chromosome | CDS | 2017117 | 345 | - | 0.431884 |
rplS | PG0037 | ribosomal protein L19 | chromosome | CDS | 46659 | 366 | + | 0.448087 |
rplT | PG0989 | ribosomal protein L20 | chromosome | CDS | 1050789 | 348 | - | 0.45977 |
rplU | PG0314 | ribosomal protein L21 | chromosome | CDS | 347830 | 363 | + | 0.46281 |
rplV | PG1933 | ribosomal protein L22 | chromosome | CDS | 2021707 | 351 | - | 0.490029 |
rplW | PG1936 | ribosomal protein L23 | chromosome | CDS | 2023289 | 294 | - | 0.421769 |
rplX | PG1927 | ribosomal protein L24 | chromosome | CDS | 2019327 | 321 | - | 0.429907 |
rplY | PG0167 | ribosomal protein L25 | chromosome | CDS | 188602 | 579 | - | 0.518135 |
rpmA | PG0315 | ribosomal protein L27 | chromosome | CDS | 348220 | 258 | + | 0.465116 |
rpmB | PG1960 | ribosomal protein L28 | chromosome | CDS | 2048514 | 240 | - | 0.475 |
rpmC | PG1930 | ribosomal protein L29 | chromosome | CDS | 2020305 | 195 | - | 0.45641 |
rpmD | PG1920 | ribosomal protein L30 | chromosome | CDS | 2016397 | 177 | - | 0.378531 |
rpmE | PG0592 | ribosomal protein L31 | chromosome | CDS | 650028 | 258 | + | 0.468992 |
rpmF | PG2140 | ribosomal protein L32 | chromosome | CDS | 2246274 | 186 | + | 0.473118 |
rpmG | PG1959 | ribosomal protein L33 | chromosome | CDS | 2048307 | 189 | - | 0.433862 |
rpmH | PG0656 | ribosomal protein L34 | chromosome | CDS | 707035 | 153 | - | 0.503268 |
rpmI | PG0990 | ribosomal protein L35 | chromosome | CDS | 1051249 | 198 | - | 0.429293 |
rpmJ | PG1915 | ribosomal protein L36 | chromosome | CDS | 2013441 | 117 | - | 0.393162 |
rpsA | PG1297 | ribosomal protein S1 | chromosome | CDS | 1375971 | 1800 | + | 0.489444 |
rpsB | PG0377 | ribosomal protein S2 | chromosome | CDS | 407060 | 846 | + | 0.518913 |
rpsC | PG1932 | ribosomal protein S3 | chromosome | CDS | 2020960 | 741 | - | 0.497976 |
rpsD | PG1912 | ribosomal protein S4 | chromosome | CDS | 2011865 | 606 | - | 0.460396 |
rpsE | PG1921 | ribosomal protein S5 | chromosome | CDS | 2016593 | 519 | - | 0.468208 |
rpsF | PG0595 | ribosomal protein S6 | chromosome | CDS | 653148 | 354 | + | 0.483051 |
rpsG | PG1941 | ribosomal protein S7 | chromosome | CDS | 2027323 | 477 | - | 0.480084 |
rpsH | PG1924 | ribosomal protein S8 | chromosome | CDS | 2018050 | 396 | - | 0.424242 |
rpsI | PG0376 | ribosomal protein S9 | chromosome | CDS | 406539 | 387 | + | 0.501292 |
rpsJ | PG1939 | ribosomal protein S10 | chromosome | CDS | 2024866 | 306 | - | 0.454248 |
rpsK | PG1913 | ribosomal protein S11 | chromosome | CDS | 2012630 | 387 | - | 0.447028 |
rpsL | PG1942 | ribosomal protein S12 | chromosome | CDS | 2028036 | 405 | - | 0.548148 |
rpsM | PG1914 | ribosomal protein S13 | chromosome | CDS | 2013028 | 381 | - | 0.451444 |
rpsN | PG1925 | ribosomal protein S14 | chromosome | CDS | 2018496 | 270 | - | 0.477778 |
rpsO | PG1758 | ribosomal protein S15 | chromosome | CDS | 1845325 | 270 | + | 0.462963 |
rpsP | PG2117 | ribosomal protein S16 | chromosome | CDS | 2225325 | 579 | - | 0.500864 |
rpsQ | PG1929 | ribosomal protein S17 | chromosome | CDS | 2020037 | 255 | - | 0.4 |
rpsR | PG0596 | ribosomal protein S18 | chromosome | CDS | 653505 | 273 | + | 0.483516 |
rpsS | PG1934 | ribosomal protein S19 | chromosome | CDS | 2022166 | 270 | - | 0.444444 |
rpsT | PG1723 | ribosomal protein S20 | chromosome | CDS | 1813209 | 255 | + | 0.466667 |
rpsU | PG0385 | ribosomal protein S21 | chromosome | CDS | 418919 | 192 | + | 0.463542 |
serS | PG0316 | seryl-tRNA synthetase | chromosome | CDS | 348577 | 1272 | + | 0.545597 |
tgt | PG0500 | queuine tRNA-ribosyltransferase | chromosome | CDS | 539337 | 1131 | + | 0.547303 |
thrS | PG0992 | threonyl-tRNA synthetase | chromosome | CDS | 1052233 | 1962 | - | 0.474006 |
trmD | PG2035 | tRNA (guanine-N1)-methyltransferase | chromosome | CDS | 2135992 | 678 | + | 0.522124 |
trmU | PG0268 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 301038 | 1086 | + | 0.478821 |
trpS | PG2085 | tryptophanyl-tRNA synthetase | chromosome | CDS | 2185672 | 984 | + | 0.490854 |
tsf | PG0378 | translation elongation factor Ts | chromosome | CDS | 408044 | 825 | + | 0.521212 |
tuf | PG0387 | translation elongation factor Tu | chromosome | CDS | 420783 | 1188 | + | 0.492424 |
tyrS | PG0263 | tyrosyl-tRNA synthetase | chromosome | CDS | 295803 | 1293 | + | 0.524362 |
valS | PG1132 | valyl-tRNA synthetase | chromosome | CDS | 1211052 | 2631 | + | 0.541619 |