TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-19 01:00:10

Gene list

Applied filters:

COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 198

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shewanella oneidensis MR-1, MR-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
SO0037 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS41557 567 + 0.485009
SO0148 hypothetical proteinchromosome CDS156320 681 + 0.340675
SO0202 conserved hypothetical proteinchromosome CDS210808 519 + 0.466281
SO0337 conserved hypothetical proteinchromosome CDS338932 357 + 0.504202
SO0358 endoribonuclease L-PSP, putativechromosome CDS367847 384 - 0.471354
SO0363 hypothetical proteinchromosome CDS373652 882 + 0.489796
SO0387 hypothetical proteinchromosome CDS400896 825 - 0.404848
SO0394 conserved hypothetical proteinchromosome CDS407220 969 - 0.49226
SO0407 ATP-dependent RNA helicase, DEAD box familychromosome CDS423730 1320 + 0.456061
SO0508 hypothetical proteinchromosome CDS534068 789 + 0.501901
SO0513 prokaryotic and mitochondrial release factors family proteinchromosome CDS537055 414 - 0.471014
SO0541 metallo-beta-lactamase family proteinchromosome CDS560624 1437 + 0.49826
SO0627 conserved hypothetical proteinchromosome CDS652739 558 - 0.464158
SO0648 conserved hypothetical proteinchromosome CDS674729 627 + 0.507177
SO0721 conserved hypothetical proteinchromosome CDS737575 252 - 0.436508
SO0758 hypothetical proteinchromosome CDS774551 348 - 0.485632
SO0764 hypothetical proteinchromosome CDS778043 810 - 0.483951
SO0828 conserved hypothetical proteinchromosome CDS846823 1062 - 0.475518
SO0873 glutamyl-tRNA synthetase domain proteinchromosome CDS903099 900 - 0.5
SO0888 amidase family proteinchromosome CDS917169 1707 + 0.543058
SO0980 RNA methyltransferase, TrmA familychromosome CDS1009614 1149 + 0.48738
SO1049 acetyltransferase, GNAT familychromosome CDS1086745 477 + 0.494759
SO1097 conserved hypothetical proteinchromosome CDS1139134 1134 - 0.457672
SO1136 ATP-dependent RNA helicase, DEAD box familychromosome CDS1177348 1344 + 0.514137
SO1153 exonuclease, putativechromosome CDS1196192 786 + 0.489822
SO1185 conserved hypothetical protein TIGR00092chromosome CDS1228241 1092 + 0.47619
SO1195 conserved hypothetical protein TIGR00253chromosome CDS1238792 300 - 0.403333
SO1222 hypothetical proteinchromosome CDS1268276 1224 - 0.45098
SO1372 conserved hypothetical proteinchromosome CDS1429893 258 - 0.468992
SO1383 ATP-dependent RNA helicase, DEAD box familychromosome CDS1439566 1302 - 0.496928
SO1397 cytosine deaminasechromosome CDS1453830 438 - 0.506849
SO1404 endoribonuclease L-PSP, putativechromosome CDS1459896 387 - 0.472868
SO1501 ATP-dependent RNA helicase, DEAD box familychromosome CDS1573651 1371 + 0.493071
SO1575 NOL1/NOP2/sun family putative RNA methylasechromosome CDS1651956 1461 - 0.502396
SO1834 acetyltransferase, GNAT familychromosome CDS1926862 537 + 0.437616
SO1936 acetyltransferase, GNAT familychromosome CDS2041368 498 + 0.449799
SO1960 conserved hypothetical proteinchromosome CDS2065922 462 + 0.441558
SO2006 NifR3/Smm1 family proteinchromosome CDS2104758 948 - 0.501055
SO2200 ribosomal protein S6 modification protein, putativechromosome CDS2314957 993 - 0.436052
SO2215 sun protein, putativechromosome CDS2327971 1215 + 0.469136
SO2261 RNA methyltransferase, TrmH family, group 1chromosome CDS2376464 726 + 0.472452
SO2346 conserved hypothetical proteinchromosome CDS2454029 879 - 0.433447
SO2557 conserved hypothetical proteinchromosome CDS2687860 1440 - 0.48125
SO2571 ATP-dependent RNA helicase, DEAD box familychromosome CDS2701334 1428 + 0.477591
SO2707 acetyltransferase, GNAT familychromosome CDS2827375 516 - 0.474806
SO2838 ATP-dependent RNA helicase, DEAD box familychromosome CDS2955718 1350 + 0.461481
SO2850 acetyltransferase, GNAT familychromosome CDS2968081 585 - 0.468376
SO2983 hypothetical proteinchromosome CDS3110252 393 - 0.508906
SO3016 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS3128009 621 - 0.478261
SO3031 siderophore biosynthesis protein, putativechromosome CDS3141502 621 + 0.479871
SO3075 RNA methyltransferase, TrmH family, putativechromosome CDS3195048 612 - 0.509804
SO3080 hemK family proteinchromosome CDS3199688 918 - 0.473856
SO3125 ATP-dependent RNA helicase, DEAD box familychromosome CDS3252401 1284 - 0.482087
SO3177 formyl transferase domain proteinchromosome CDS3315430 762 - 0.349081
SO3291 cytidine/deoxycytidylate deaminase family proteinchromosome CDS3434995 585 - 0.494017
SO3332 transcriptional regulator, CopG familychromosome CDS3478716 429 + 0.470862
SO3336 hypothetical proteinchromosome CDS3483466 573 + 0.458988
SO3345 translation initiation factor, putativechromosome CDS3491367 330 + 0.460606
SO3388 ATP-dependent RNA helicase, DEAD box familychromosome CDS3526441 1230 - 0.470732
SO3448 hypothetical proteinchromosome CDS3592353 117 - 0.452991
SO3456 RNA methyltransferase, TrmA familychromosome CDS3600490 1350 - 0.477778
SO3634 nucleotidyltransferase family proteinchromosome CDS3791930 681 - 0.493392
SO3676 hypothetical proteinchromosome CDS3828945 342 + 0.461988
SO3696 hypothetical proteinchromosome CDS3847226 1047 + 0.465138
SO3783 ATP-dependent RNA helicase, DEAD box familychromosome CDS3935464 1608 + 0.497512
SO3832 hemK family proteinchromosome CDS3981537 861 - 0.483159
SO3912 TIM-barrel protein, yjbN familychromosome CDS4056905 1008 - 0.479167
SO3934 RNA methyltransferase, TrmH family, group 3chromosome CDS4078781 741 - 0.495277
SO4398 conserved hypothetical protein TIGR00256chromosome CDS4591451 438 - 0.490868
SO4529 RNA methyltransferase, TrmH family, group 2chromosome CDS4724172 465 + 0.509677
SO4551 conserved hypothetical proteinchromosome CDS4747284 354 - 0.491525
SO4599 ribonuclease, T2 familychromosome CDS4793172 1155 + 0.477056
alaS alanyl-tRNA synthetasechromosome CDS3569751 2625 - 0.473143
ansA L-asparaginase Ichromosome CDS2530903 1014 + 0.476331
argS arginyl-tRNA synthetasechromosome CDS4282919 1746 + 0.493127
asnS asparaginyl-tRNA synthetasechromosome CDS2332942 1401 - 0.491792
aspS aspartyl-tRNA synthetasechromosome CDS2541563 1776 - 0.476914
cafA ribonuclease Gchromosome CDS4252299 1467 - 0.503749
cysS cysteinyl-tRNA synthetasechromosome CDS1877253 1380 + 0.478986
dbpA ATP-dependent RNA helicase DbpAchromosome CDS924809 1377 + 0.481481
deaD ATP-dependent RNA helicase DeaDchromosome CDS4189577 1872 + 0.505876
def-1 polypeptide deformylasechromosome CDS37392 507 - 0.428008
def-2 polypeptide deformylasechromosome CDS1102263 546 - 0.485348
def-3 polypeptide deformylasechromosome CDS2660149 492 - 0.432927
efp translation elongation factor Pchromosome CDS2437896 561 - 0.440285
fmt methionyl-tRNA formyltransferasechromosome CDS36420 957 - 0.510972
frr ribosome recycling factorchromosome CDS1713943 558 + 0.460573
fusA-1 translation elongation factor Gchromosome CDS241889 2097 + 0.47258
fusA-2 translation elongation factor Gchromosome CDS863203 2094 + 0.462751
glnS glutaminyl-tRNA synthetasechromosome CDS1872353 1671 + 0.447038
glyQ glycyl-tRNA synthetase, alpha subunitchromosome CDS17256 906 - 0.498896
glyS glycyl-tRNA synthetase, beta subunitchromosome CDS15180 2067 - 0.480406
gshB glutathione synthetasechromosome CDS849536 948 - 0.501055
hisS histidyl-tRNA synthetasechromosome CDS3462354 1278 - 0.478091
hslR heat shock protein 15chromosome CDS170700 399 - 0.45614
ileS isoleucyl-tRNA synthetasechromosome CDS3685808 2823 - 0.476089
infA translation initiation factor IF-1chromosome CDS2760959 219 + 0.447489
infB translation initiation factor IF-2chromosome CDS1247966 2658 + 0.495862
infC translation initiation factor IF-3chromosome CDS2412499 432 + 0.44213
ksgA dimethyladenosine transferasechromosome CDS3798650 807 + 0.491945
leuS leucyl-tRNA synthetasechromosome CDS1215819 2580 - 0.485271
lysS lysyl-tRNA synthetasechromosome CDS1025577 1503 + 0.477046
map methionine aminopeptidase, type Ichromosome CDS1710307 798 - 0.466165
miaA tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS628738 927 + 0.450917
miaB tRNA-i(6)A37 modification enzyme MiaBchromosome CDS1223880 1425 - 0.479298
miaE tRNA-(MS[2]IO[6]A)-hydroxylasechromosome CDS1875042 786 + 0.447837
pcnB polyA polymerasechromosome CDS901508 1317 - 0.501898
pheS phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2180858 984 + 0.465447
pnp polyribonucleotide nucleotidyltransferasechromosome CDS1254812 2109 + 0.458037
prfA peptide chain release factor 1chromosome CDS3982400 1092 - 0.508242
prmA ribosomal protein L11 methyltransferasechromosome CDS408364 882 - 0.495465
proS prolyl-tRNA synthetasechromosome CDS3289870 1713 + 0.487449
pth peptidyl-tRNA hydrolasechromosome CDS1227499 588 + 0.469388
queA S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS3243003 1038 - 0.483622
rbfA ribosome-binding factor Achromosome CDS1250687 444 + 0.468468
rimK-1 ribosomal protein S6 modification proteinchromosome CDS568931 906 + 0.465784
rimK-2 ribosomal protein S6 modification proteinchromosome CDS2383894 900 + 0.482222
rimM 16S rRNA processing protein RimMchromosome CDS1413702 534 + 0.456929
rmf ribosome modulation factorchromosome CDS1947212 177 + 0.418079
rnd ribonuclease Dchromosome CDS2706706 1104 - 0.457428
rne ribonuclease Echromosome CDS2906071 3267 + 0.479951
rnpA ribonuclease P protein componentchromosome CDS5908 357 - 0.448179
rph ribonuclease PHchromosome CDS4432337 714 - 0.498599
rplA ribosomal protein L1chromosome CDS230234 702 + 0.44302
rplB ribosomal protein L2chromosome CDS247492 825 + 0.498182
rplC ribosomal protein L3chromosome CDS245912 639 + 0.469484
rplD ribosomal protein L4chromosome CDS246568 606 + 0.490099
rplE ribosomal protein L5chromosome CDS251405 540 + 0.451852
rplF ribosomal protein L6chromosome CDS252688 534 + 0.485019
rplI ribosomal protein L9chromosome CDS4074680 453 - 0.450331
rplJ ribosomal protein L10chromosome CDS231201 501 + 0.479042
rplK ribosomal protein L11chromosome CDS229801 429 + 0.445221
rplL ribosomal protein L7/L12chromosome CDS231756 369 + 0.441734
rplM ribosomal protein L13chromosome CDS4084824 429 - 0.459207
rplN ribosomal protein L14chromosome CDS250698 369 + 0.471545
rplO ribosomal protein L15chromosome CDS254291 435 + 0.487356
rplP ribosomal protein L16chromosome CDS249671 411 + 0.462287
rplQ ribosomal protein L17chromosome CDS258793 396 + 0.497475
rplR ribosomal protein L18chromosome CDS253232 351 + 0.504274
rplS ribosomal protein L19chromosome CDS1415032 354 + 0.457627
rplT ribosomal protein L20chromosome CDS2413227 357 + 0.420168
rplU ribosomal protein L21chromosome CDS3807340 312 - 0.439103
rplV ribosomal protein L22chromosome CDS248625 333 + 0.495495
rplW ribosomal protein L23chromosome CDS247170 306 + 0.45098
rplX ribosomal protein L24chromosome CDS251078 315 + 0.425397
rplY ribosomal protein L25chromosome CDS2210859 447 + 0.431767
rpmA ribosomal protein L27chromosome CDS3807071 255 - 0.435294
rpmB ribosomal protein L28chromosome CDS4424918 237 - 0.438819
rpmC ribosomal protein L29chromosome CDS250081 192 + 0.46875
rpmD ribosomal protein L30chromosome CDS254105 183 + 0.42623
rpmE ribosomal protein L31chromosome CDS4279066 213 - 0.422535
rpmF ribosomal protein L32chromosome CDS2901975 171 - 0.473684
rpmG ribosomal protein L33chromosome CDS4424738 174 - 0.333333
rpmH ribosomal protein L34chromosome CDS6281 138 - 0.543478
rpmI ribosomal protein L35chromosome CDS2413016 195 + 0.435897
rpmJ ribosomal protein L36chromosome CDS256095 114 + 0.473684
rpsA ribosomal protein S1chromosome CDS2505090 1668 - 0.446643
rpsB ribosomal protein S2chromosome CDS1711414 729 + 0.465021
rpsC ribosomal protein S3chromosome CDS248967 693 + 0.477633
rpsD ribosomal protein S4chromosome CDS257118 621 + 0.446055
rpsE ribosomal protein S5chromosome CDS253595 504 + 0.472222
rpsF ribosomal protein S6chromosome CDS4075722 396 - 0.482323
rpsG ribosomal protein S7chromosome CDS241340 471 + 0.469214
rpsH ribosomal protein S8chromosome CDS252285 393 + 0.473282
rpsI ribosomal protein S9chromosome CDS4084417 393 - 0.475827
rpsJ ribosomal protein S10chromosome CDS245573 312 + 0.464744
rpsK ribosomal protein S11chromosome CDS256694 393 + 0.483461
rpsL ribosomal protein S12chromosome CDS240885 375 + 0.498667
rpsM ribosomal protein S13chromosome CDS256323 357 + 0.478992
rpsN ribosomal protein S14chromosome CDS251955 306 + 0.480392
rpsO ribosomal protein S15chromosome CDS1252211 270 + 0.451852
rpsP ribosomal protein S16chromosome CDS1413436 249 + 0.493976
rpsQ ribosomal protein S17chromosome CDS250272 249 + 0.421687
rpsR ribosomal protein S18chromosome CDS4075169 228 - 0.429825
rpsS ribosomal protein S19chromosome CDS248331 279 + 0.469534
rpsT ribosomal protein S20chromosome CDS3691476 267 + 0.460674
rpsU ribosomal protein S21chromosome CDS1339815 216 - 0.453704
rrmJ ribosomal RNA large subunit methyltransferase Jchromosome CDS1239182 630 + 0.496825
selB selenocysteine-specific translation elongation factorchromosome CDS115656 2022 + 0.540059
serS seryl-tRNA synthetasechromosome CDS2422244 1287 + 0.4662
smpA small protein Achromosome CDS1540179 492 - 0.455285
srmB ATP-dependent RNA helicase SrmBchromosome CDS982197 1263 - 0.502771
sun sun proteinchromosome CDS35131 1287 - 0.499611
tgt queuine tRNA-ribosyltransferasechromosome CDS3241717 1125 - 0.477333
thrS threonyl-tRNA synthetasechromosome CDS2410456 1929 + 0.454121
trmA tRNA (uracil-5-)-methyltransferasechromosome CDS213570 1101 - 0.443233
trmD tRNA (guanine-N1)-methyltransferasechromosome CDS1414251 747 + 0.504685
trmU tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS2768717 1119 + 0.484361
trpS tryptophanyl-tRNA synthetasechromosome CDS300003 999 + 0.496496
tsf translation elongation factor Tschromosome CDS1712262 852 + 0.449531
tufA translation elongation factor Tuchromosome CDS244057 1185 + 0.479325
tufB translation elongation factor Tuchromosome CDS227280 1185 + 0.478481
tyrS tyrosyl-tRNA synthetasechromosome CDS1371199 1197 + 0.470343
valS valyl-tRNA synthetasechromosome CDS3563491 2877 + 0.486618
yfiA-1 ribosomal subunit interface proteinchromosome CDS3541770 357 - 0.436975
yfiA-2 ribosomal subunit interface proteinchromosome CDS3561578 357 + 0.417367
yfiA-3 ribosomal subunit interface proteinchromosome CDS4103607 288 + 0.399306
yliG MiaB-like putative RNA modifying enzyme YliGchromosome CDS4226192 1446 + 0.506916