Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 184
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Bacteroides fragilis NCTC 9343, ATCC 25285 = NCTC 9343 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | BF1327 | conserved hypothetical protein | chromosome | CDS | 1590358 | 2574 | - | 0.413753 |
NA | BF1645 | putative nucleotide deaminase | chromosome | CDS | 1920897 | 468 | - | 0.478632 |
NA | BF2325 | putative DNA primase | chromosome | CDS | 2717731 | 3054 | - | 0.436477 |
NA | BF0027 | putative SAM/TRAM family methylase protein | chromosome | CDS | 32971 | 1374 | + | 0.467249 |
NA | BF0134 | putative RNA helicase dead-box protein | chromosome | CDS | 140054 | 1944 | - | 0.490741 |
NA | BF0624 | possible Hsp-70 cofactor | chromosome | CDS | 761279 | 849 | - | 0.383981 |
NA | BF3238 | putative histidyl-tRNA synthetase | chromosome | CDS | 3809735 | 1365 | - | 0.434432 |
NA | BF2853 | putative tRNA:rRNA methyltransferase | chromosome | CDS | 3315783 | 741 | - | 0.454791 |
NA | BF1278 | putative SpoU-like rRNA methylase | chromosome | CDS | 1531513 | 813 | + | 0.473555 |
NA | BF0777 | possible endoribonuclease | chromosome | CDS | 952333 | 1131 | + | 0.5084 |
NA | BF0453 | putative protoporphyrinogen oxidase | chromosome | CDS | 533939 | 837 | + | 0.452808 |
NA | BF4077 | conserved hypothetical protein | chromosome | CDS | 4799698 | 1473 | - | 0.425662 |
NA | BF2183 | putative exported protein | chromosome | CDS | 2537373 | 1452 | + | 0.473829 |
NA | BF0321 | putative peptide chain release factor | chromosome | CDS | 379054 | 960 | + | 0.453125 |
NA | BF3695 | putative nucleotidyltransferase | chromosome | CDS | 4357981 | 717 | - | 0.324965 |
NA | BF0150 | conserved hypothetical protein | chromosome | CDS | 156456 | 933 | - | 0.4791 |
NA | BF0907 | putative Sua5/yciO/yrdC family protein | chromosome | CDS | 1135303 | 615 | - | 0.486179 |
NA | BF4025 | putative ribosomal protein S21 | chromosome | CDS | 4728521 | 192 | - | 0.34375 |
NA | BF2751 | hypothetical protein | chromosome | CDS | 3207636 | 477 | + | 0.444444 |
NA | BF2726 | putative peptide chain release factor | chromosome | CDS | 3173249 | 621 | - | 0.484702 |
NA | BF3791 | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 4471397 | 1401 | - | 0.47823 |
NA | BF2724 | conserved hypothetical protein | chromosome | CDS | 3171401 | 1113 | - | 0.477987 |
NA | BF3654 | putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase | chromosome | CDS | 4310321 | 1224 | + | 0.466503 |
NA | BF2576 | putative aminopeptidase | chromosome | CDS | 3001142 | 855 | + | 0.449123 |
NA | BF1212 | conserved hypothetical exported protein | chromosome | CDS | 1475297 | 468 | + | 0.482906 |
NA | BF4023 | putative sigma(54) modulation protein | chromosome | CDS | 4727252 | 300 | - | 0.36 |
NA | BF3694 | putative nucleotidyltransferase | chromosome | CDS | 4357247 | 732 | - | 0.329235 |
NA | BF0556 | putative L-asparaginase I | chromosome | CDS | 662870 | 1026 | - | 0.489279 |
NA | BF2309 | hypothetical protein | chromosome | CDS | 2705822 | 492 | + | 0.406504 |
NA | BF2811 | putative exported protein | chromosome | CDS | 3271638 | 1302 | + | 0.467742 |
NA | BF2851 | conserved hypothetical translation inhibitor protein | chromosome | CDS | 3313385 | 375 | - | 0.485333 |
NA | BF4152 | putative phosphoribulose/uridine kinase | chromosome | CDS | 4887823 | 1665 | + | 0.431231 |
NA | BF0026 | hypothetical protein | chromosome | CDS | 32311 | 330 | - | 0.415152 |
NA | BF0432 | 50S ribosomal protein L34 | chromosome | CDS | 514274 | 162 | + | 0.438272 |
NA | BF2831 | hypothetical protein | chromosome | CDS | 3290147 | 615 | - | 0.442276 |
NA | BF0513 | putative 50S ribosomal protein | chromosome | CDS | 594597 | 354 | - | 0.420904 |
NA | BF1923 | conserved hypothetical exported protein | chromosome | CDS | 2242357 | 315 | + | 0.377778 |
NA | BF3675 | conserved hypothetical protein | chromosome | CDS | 4340965 | 564 | - | 0.466312 |
NA | BF3010 | putative exported protein | chromosome | CDS | 3500585 | 2166 | + | 0.430286 |
NA | BF2108 | putative acetyltransferase | chromosome | CDS | 2463566 | 540 | + | 0.396296 |
NA | BF0938 | putative tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 1173154 | 921 | - | 0.457112 |
NA | BF2568 | putative RNA methyltransferase | chromosome | CDS | 2994453 | 1419 | + | 0.475687 |
NA | BF3886 | putative membrane protein | chromosome | CDS | 4573933 | 297 | - | 0.441077 |
NA | BF0174 | putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | chromosome | CDS | 190264 | 1095 | + | 0.423744 |
NA | BF3636 | putative elongation factor G | chromosome | CDS | 4291801 | 2157 | - | 0.476124 |
NA | BF1668 | putative ATP-dependent RNA helicase | chromosome | CDS | 1940577 | 1284 | - | 0.450156 |
NA | BF0445 | conserved hypothetical protein | chromosome | CDS | 525585 | 237 | - | 0.447257 |
NA | BF0762 | hypothetical protein | chromosome | CDS | 930219 | 1794 | + | 0.410256 |
NA | BF3309 | putative acetyltransferase | chromosome | CDS | 3904991 | 543 | + | 0.421731 |
NA | BF0076 | possible ribonuclease P component | chromosome | CDS | 73484 | 324 | + | 0.419753 |
NA | BF3442 | putative polyA polymerase | chromosome | CDS | 4063161 | 1446 | - | 0.471646 |
NA | BF3627 | conserved hypothetical protein | chromosome | CDS | 4282951 | 1320 | - | 0.491667 |
NA | BF0219 | putative translation initiation factor IF-2 | chromosome | CDS | 237064 | 3048 | + | 0.43832 |
NA | BF2162 | putative exported protein | chromosome | CDS | 2516326 | 504 | + | 0.410714 |
NA | BF0001 | putative SpoU rRNA methylase family protein | chromosome | CDS | 67 | 528 | + | 0.407197 |
NA | BF1164 | putative ribosomal L25p family stress protein | chromosome | CDS | 1421890 | 591 | - | 0.407783 |
NA | BF2874 | putative exported protein | chromosome | CDS | 3339371 | 1404 | - | 0.587607 |
NA | BF2569 | putative RNA pseudouridylate synthase | chromosome | CDS | 2995882 | 918 | + | 0.494553 |
NA | BF2117 | hypothetical protein | chromosome | CDS | 2470469 | 288 | - | 0.371528 |
NA | BF0599 | conserved hypothetical protein | chromosome | CDS | 726703 | 1992 | + | 0.482932 |
NA | BF4365 | putative ATP/GTP-binding protein | chromosome | CDS | 5190269 | 1104 | + | 0.459239 |
NA | BF0756 | conserved hypothetical protein | chromosome | CDS | 918777 | 1548 | + | 0.413437 |
NA | BF4213 | conserved hypothetical protein | chromosome | CDS | 4977652 | 1659 | - | 0.423146 |
NA | BF3783 | putative translation initation factor | chromosome | CDS | 4465440 | 351 | + | 0.452991 |
NA | BF3776 | putative tRNA methyltransferase | chromosome | CDS | 4459533 | 1089 | - | 0.529844 |
NA | BF2733 | putative lipoprotein | chromosome | CDS | 3180926 | 1236 | - | 0.458738 |
NA | BF1468 | putative bacteriophage-related replication protein | chromosome | CDS | 1735881 | 1110 | + | 0.528829 |
NA | BF1170 | conserved hypothetical protein | chromosome | CDS | 1426141 | 417 | + | 0.366906 |
NA | BF1056 | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 1310211 | 1620 | - | 0.457407 |
NA | BF2507 | putative oxidoreductase | chromosome | CDS | 2915711 | 1299 | - | 0.384142 |
NA | BF3109 | putative exported protein | chromosome | CDS | 3628918 | 1038 | + | 0.480732 |
NA | BF0948 | putative 3'-5' exonuclease | chromosome | CDS | 1184103 | 651 | - | 0.436252 |
NA | BF3931 | putative ribosomal large subunit pseudouridine synthase | chromosome | CDS | 4637517 | 666 | - | 0.430931 |
NA | BF4274 | putative ribosome-binding factor A | chromosome | CDS | 5074151 | 333 | - | 0.384384 |
NA | BF4120 | putative acetyltransferase | chromosome | CDS | 4848197 | 531 | + | 0.346516 |
NA | BF0930 | putative 50S ribosomal protein L21 | chromosome | CDS | 1163502 | 318 | - | 0.40566 |
NA | BF0906 | hypothetical protein | chromosome | CDS | 1134814 | 426 | - | 0.389671 |
NA | BF1940 | conserved hypothetical protein | chromosome | CDS | 2263143 | 1011 | + | 0.493571 |
NA | BF2398 | hypothetical protein | chromosome | CDS | 2798514 | 435 | - | 0.347126 |
NA | BF4353 | putative TIM-barrel protein, possible dihydrouridine synthase | chromosome | CDS | 5177786 | 975 | + | 0.514872 |
NA | BF3494 | putative 16S rRNA processing protein | chromosome | CDS | 4116999 | 543 | - | 0.458564 |
NA | BF2372 | putative tRNA/rRNA methyltransferase | chromosome | CDS | 2767920 | 762 | - | 0.393701 |
NA | BF0069 | putative tRNA pseudouridine synthase | chromosome | CDS | 67081 | 702 | + | 0.467236 |
NA | BF0637 | possible cytosine deaminase | chromosome | CDS | 772250 | 438 | + | 0.474886 |
NA | BF2603 | putative LPS biosynthesis-related sugar-phosphate nucleotidyltransferase | chromosome | CDS | 3028950 | 777 | - | 0.365508 |
NA | BF0070 | putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase | chromosome | CDS | 67830 | 1059 | + | 0.433428 |
alaS | BF0689 | putative alanyl-tRNA synthetase | chromosome | CDS | 843422 | 2619 | - | 0.472699 |
ansA | BF2680 | putative L-asparaginase I | chromosome | CDS | 3120537 | 1047 | + | 0.469914 |
ansB | BF4039 | putative L-asparaginase II precursor | chromosome | CDS | 4746952 | 1059 | + | 0.481586 |
argS | BF4219 | putative arginyl-tRNA synthetase | chromosome | CDS | 4988754 | 1794 | - | 0.471572 |
asnS | BF3790 | asparaginyl-trna synthetase | chromosome | CDS | 4469887 | 1404 | - | 0.444444 |
aspS | BF2463 | aspartyl-tRNA synthetase | chromosome | CDS | 2863354 | 1758 | + | 0.457907 |
cysS | BF0161 | putative cysteinyl-tRNA synthetase | chromosome | CDS | 172929 | 1476 | - | 0.481707 |
dbpA | BF2071 | putative ATP-independent RNA helicase | chromosome | CDS | 2423047 | 1332 | + | 0.498498 |
def | BF1691 | putative peptide deformylase | chromosome | CDS | 1968900 | 555 | + | 0.409009 |
dtd | BF0110 | putative D-tyrosyl-tRNA acylase | chromosome | CDS | 114886 | 453 | - | 0.406181 |
efp | BF0431 | putative elongation factor P | chromosome | CDS | 513514 | 567 | - | 0.451499 |
fmt | BF3673 | putative methionyl-tRNA formyltransferase | chromosome | CDS | 4338106 | 975 | - | 0.454359 |
frr | BF0619 | putative ribosome recycling factor | chromosome | CDS | 754508 | 561 | - | 0.465241 |
fusA | BF4005 | putative translation elongation factor G | chromosome | CDS | 4707403 | 2118 | - | 0.446176 |
glnS | BF2773 | glutaminyl-tRNA synthetase | chromosome | CDS | 3231448 | 1749 | + | 0.521441 |
gltX | BF4030 | putative glutamyl-tRNA synthetase | chromosome | CDS | 4732693 | 1518 | - | 0.461792 |
glyS | BF0354 | putative glycyl-tRNA synthetase | chromosome | CDS | 429964 | 1542 | + | 0.446174 |
hslR | BF1162 | putative ribosome-associated heat shock protein | chromosome | CDS | 1420768 | 426 | - | 0.422535 |
ileS | BF2367 | isoleucyl-tRNA synthetase | chromosome | CDS | 2761981 | 3426 | + | 0.411851 |
infA | BF3981 | putative translation initiation factor IF-1 | chromosome | CDS | 4695668 | 219 | - | 0.342466 |
infC | BF1695 | putative translation initiation factor IF-3 | chromosome | CDS | 1975272 | 612 | + | 0.398693 |
ksgA | BF0706 | putative dimethyladenosine transferase | chromosome | CDS | 864395 | 819 | - | 0.426129 |
leuS | BF4372 | putative Leucyl-tRNA synthetase | chromosome | CDS | 5198827 | 2832 | + | 0.445621 |
lysU | BF3602 | putative lysyl-tRNA synthetase, heat inducible | chromosome | CDS | 4250619 | 1728 | + | 0.459491 |
map | BF3982 | putative methionine aminopeptidase | chromosome | CDS | 4695890 | 798 | - | 0.422306 |
miaA | BF0825 | putative tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 1019290 | 906 | - | 0.437086 |
pheS | BF3104 | putative phenylalanyl-tRNA synthetase alpha chain | chromosome | CDS | 3623521 | 1020 | + | 0.502941 |
pnpA | BF4129 | putative polyribonucleotide nucleotidyltransferase | chromosome | CDS | 4856811 | 2127 | + | 0.445698 |
prfA | BF0832 | putative peptide chain release factor 1 | chromosome | CDS | 1026381 | 1113 | - | 0.4708 |
prfC | BF1297 | putative peptide chain release factor 3 | chromosome | CDS | 1554916 | 1575 | + | 0.466667 |
prmA | BF1638 | putative ribosomal protein L11 methyltransferase | chromosome | CDS | 1911559 | 843 | - | 0.472123 |
proS | BF2515 | prolyl-tRNA synthetase | chromosome | CDS | 2926352 | 1494 | - | 0.454485 |
pth | BF1163 | putative peptidyl-tRNA hydrolase | chromosome | CDS | 1421220 | 564 | - | 0.411348 |
rhlE | BF2388 | putative ATP-dependent RNA helicase | chromosome | CDS | 2787273 | 1257 | - | 0.417661 |
rluD | BF0434 | ribosomal large subunit pseudouridine synthase | chromosome | CDS | 515318 | 1074 | + | 0.47486 |
rne | BF1566 | putative ribonuclease E | chromosome | CDS | 1822486 | 1575 | - | 0.43746 |
rplA | BF4018 | putative 50S ribosomal protein L1 | chromosome | CDS | 4723393 | 699 | - | 0.402003 |
rplB | BF4000 | putative 50S ribosomal protein L2 | chromosome | CDS | 4704617 | 825 | - | 0.450909 |
rplC | BF4003 | putative 50S ribosomal protein L3 | chromosome | CDS | 4706380 | 618 | - | 0.435275 |
rplD | BF4002 | putative 50S ribosomal protein L4 | chromosome | CDS | 4705754 | 627 | - | 0.403509 |
rplE | BF3991 | putative 50S ribosomal protein L5 | chromosome | CDS | 4700948 | 558 | - | 0.390681 |
rplF | BF3988 | putative 50S ribosomal protein L6 | chromosome | CDS | 4699607 | 570 | - | 0.382456 |
rplI | BF3630 | putative 50S ribosomal protein L9 | chromosome | CDS | 4287072 | 444 | - | 0.38964 |
rplJ | BF4017 | putative 50S ribosomal protein L10 | chromosome | CDS | 4722865 | 513 | - | 0.401559 |
rplK | BF4019 | putative 50S ribosomal protein L11 | chromosome | CDS | 4724107 | 444 | - | 0.434685 |
rplL | BF4016 | putative 50S ribosomal protein L7/L12 | chromosome | CDS | 4722442 | 375 | - | 0.418667 |
rplM | BF3787 | putative 50S ribosomal protein L13 | chromosome | CDS | 4468446 | 462 | - | 0.406926 |
rplN | BF3993 | putative 50S ribosomal protein L14 | chromosome | CDS | 4701846 | 366 | - | 0.42623 |
rplO | BF3984 | putative 50S ribosomal protein L15 | chromosome | CDS | 4698053 | 447 | - | 0.378076 |
rplP | BF3996 | putative 50S ribosomal protein L16 | chromosome | CDS | 4702683 | 435 | - | 0.425287 |
rplQ | BF3975 | putative 50S ribosomal protein L17 | chromosome | CDS | 4692510 | 486 | - | 0.415638 |
rplR | BF3987 | putative 50S ribosomal protein L18 | chromosome | CDS | 4699241 | 345 | - | 0.4 |
rplT | BF1697 | putative 50S ribosomal protein L20 | chromosome | CDS | 1976247 | 351 | + | 0.418803 |
rplV | BF3998 | putative 50S ribosomal protein L22 | chromosome | CDS | 4703881 | 357 | - | 0.408964 |
rplW | BF4001 | putative 50S ribosomal protein L23 | chromosome | CDS | 4705447 | 291 | - | 0.350515 |
rplX | BF3992 | putative 50S ribosomal protein L24 | chromosome | CDS | 4701505 | 321 | - | 0.373832 |
rpmA | BF0929 | putative 50S ribosomal protein L27 | chromosome | CDS | 1163210 | 270 | - | 0.433333 |
rpmB | BF2510 | 50S ribosomal protein L28 | chromosome | CDS | 2918508 | 261 | - | 0.386973 |
rpmC | BF3995 | putative 50S ribosomal protein L29 | chromosome | CDS | 4702480 | 198 | - | 0.348485 |
rpmD | BF3985 | putative 50S ribosomal protein L30 | chromosome | CDS | 4698530 | 177 | - | 0.38983 |
rpmE | BF3140 | 50S ribosomal protein L31 | chromosome | CDS | 3661056 | 252 | + | 0.392857 |
rpmG | BF2509 | 50S ribosomal protein L33 | chromosome | CDS | 2918293 | 189 | - | 0.349206 |
rpmI | BF1696 | putative 50S ribosomal protein L35 | chromosome | CDS | 1975949 | 198 | + | 0.363636 |
rpmJ | BF3980 | putative 50S ribosomal protein L36 | chromosome | CDS | 4695543 | 117 | - | 0.333333 |
rpsA | BF0959 | putative 30S ribosomal protein S1 | chromosome | CDS | 1199461 | 1794 | + | 0.432553 |
rpsB | BF3785 | putative 30S ribosomal protein S2 | chromosome | CDS | 4467096 | 837 | - | 0.421744 |
rpsC | BF3997 | putative 30S ribosomal protein S3 | chromosome | CDS | 4703141 | 735 | - | 0.409524 |
rpsD | BF3977 | putative 30S ribosomal protein S4 | chromosome | CDS | 4694003 | 606 | - | 0.405941 |
rpsE | BF3986 | putative 30S ribosomal protein S5 | chromosome | CDS | 4698717 | 519 | - | 0.404624 |
rpsF | BF3632 | putative 30S ribosomal protein S6 | chromosome | CDS | 4287802 | 345 | - | 0.373913 |
rpsG | BF4006 | putative 30S ribosomal protein S7 | chromosome | CDS | 4709574 | 477 | - | 0.406709 |
rpsH | BF3989 | putative 30S ribosomal protein S8 | chromosome | CDS | 4700192 | 396 | - | 0.343434 |
rpsI | BF3786 | putative 30S ribosomal protein S9 | chromosome | CDS | 4468053 | 387 | - | 0.444444 |
rpsJ | BF4004 | putative 30S ribosomal protein S10 | chromosome | CDS | 4707016 | 306 | - | 0.408497 |
rpsK | BF3978 | putative 30S ribosomal protein S11 | chromosome | CDS | 4694728 | 390 | - | 0.407692 |
rpsL | BF4007 | putative 30S ribosomal protein S12 | chromosome | CDS | 4710210 | 402 | - | 0.487562 |
rpsM | BF3979 | putative 30S ribosomal protein S13 | chromosome | CDS | 4695129 | 381 | - | 0.396325 |
rpsN | BF3990 | putative 30S ribosomal protein S14 | chromosome | CDS | 4700642 | 300 | - | 0.44 |
rpsO | BF4259 | putative 30S ribosomal protein S15 | chromosome | CDS | 5054313 | 270 | + | 0.407407 |
rpsP | BF2731 | putative 30S ribosomal protein S16 | chromosome | CDS | 3179871 | 546 | + | 0.454212 |
rpsQ | BF3994 | putative 30S ribosomal protein S17 | chromosome | CDS | 4702214 | 270 | - | 0.37037 |
rpsR | BF3631 | putative 30S ribosomal protein S18 | chromosome | CDS | 4287527 | 273 | - | 0.40293 |
rpsS | BF3999 | putative 30S ribosomal protein S19 | chromosome | CDS | 4704327 | 270 | - | 0.374074 |
rpsT | BF0247 | 30S ribosomal protein S20 | chromosome | CDS | 276015 | 255 | - | 0.34902 |
serS | BF0928 | putative seryl-tRNA synthetase | chromosome | CDS | 1161779 | 1275 | - | 0.459608 |
tgt | BF2392 | queuine tRNA-ribosyltransferase | chromosome | CDS | 2791881 | 1131 | - | 0.450928 |
thrS | BF1694 | putative threonyl-tRNA synthetase | chromosome | CDS | 1973213 | 1941 | + | 0.438949 |
trmD | BF2484 | putative tRNA (guanine-N(1)-)-methyltransferase | chromosome | CDS | 2885125 | 678 | - | 0.432153 |
trmU | BF1343 | putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase | chromosome | CDS | 1604507 | 1062 | + | 0.467043 |
trpS | BF3809 | putative tryptophanyl-tRNA synthetase | chromosome | CDS | 4498525 | 1092 | + | 0.481685 |
truA | BF0847 | putative tRNA pseudouridine synthase A | chromosome | CDS | 1041749 | 759 | + | 0.444005 |
tsf | BF3784 | putative elongation factor TS | chromosome | CDS | 4465980 | 993 | - | 0.437059 |
tuf | BF4022 | Elongation factor Tu | chromosome | CDS | 4725502 | 1185 | - | 0.440506 |
tyrS | BF0079 | putative tyrosyl-tRNA synthetase 1 | chromosome | CDS | 74735 | 1293 | + | 0.437742 |
upeY | BF2606 | putative transcriptional regulatory protein | chromosome | CDS | 3031735 | 519 | - | 0.421965 |
upgY | BF0731 | putative transcriptional regulator | chromosome | CDS | 894922 | 537 | + | 0.430168 |
uphY | BF3466 | putative LPS biosynthesis related transcriptional regulatory protein | chromosome | CDS | 4090896 | 540 | - | 0.522222 |
valS | BF0966 | putative valyl-tRNA synthetase | chromosome | CDS | 1205947 | 2631 | + | 0.473204 |