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2024-05-19 00:13:55

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome 1

Number of genes found: 180

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Photobacterium profundum, ss9
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PBPRA3236 putative 30S ribosomal subunit protein S9chromosome 1 CDS3672816 408 - 0.448529
NA PBPRA3067 putative alanyl-tRNA synthetasechromosome 1 CDS3502316 2721 - 0.442117
NA PBPRA2965 putative ribosome recycling factorchromosome 1 CDS3398981 558 - 0.410394
NA PBPRA3542 putative ATP-dependent RNA helicase, DEAD boxfamilychromosome 1 CDS4005045 1314 + 0.456621
NA PBPRA3377 putative lysyl-tRNA synthetase-related proteinchromosome 1 CDS3818320 972 - 0.449588
NA PBPRA2156 Putative phenylalanyl-tRNA synthetase, alpha chainchromosome 1 CDS2482064 1146 - 0.4363
NA PBPRA3409 putative ribosomal protein L11 methyltransferasechromosome 1 CDS3860719 954 + 0.442348
NA PBPRA1153 putative initiation factor IF-1chromosome 1 CDS1294259 219 - 0.43379
NA PBPRA1064 putative arginyl-tRNA synthetasechromosome 1 CDS1181301 1731 - 0.44714
NA PBPRA0626 hypothetical proteinchromosome 1 CDS683400 600 + 0.436667
NA PBPRA2061 hypothetical polypeptide deformylasechromosome 1 CDS2375691 528 + 0.4375
NA PBPRA0859 Hypothetical proteinchromosome 1 CDS946938 408 + 0.406863
NA PBPRA0286 putative tryptophanyl-tRNA synthetasechromosome 1 CDS300504 1020 + 0.441176
NA PBPRA3138 putative glutathione synthetasechromosome 1 CDS3574641 948 + 0.432489
NA PBPRA0874 putative glutamyl-tRNA synthetasechromosome 1 CDS965162 1425 + 0.425263
NA PBPRA1447 hypothetical proteinchromosome 1 CDS1624889 693 + 0.419913
NA PBPRA2157 Putative large subunit ribosomal protein L20chromosome 1 CDS2483502 354 - 0.446328
NA PBPRA0320 putative ribosomal protein L3chromosome 1 CDS333001 630 + 0.461905
NA PBPRA3436 putative ribosomal protein L11chromosome 1 CDS3890939 429 - 0.473193
NA PBPRA0625 putative peptide chain release factor RF-3chromosome 1 CDS682420 978 + 0.443763
NA PBPRA1414 hypothetical proteinchromosome 1 CDS1590804 255 - 0.337255
NA PBPRA0344 putative ribosomal protein S4chromosome 1 CDS344255 609 + 0.458128
NA PBPRA1183 hypothetical proteinchromosome 1 CDS1330905 585 + 0.418803
NA PBPRA0323 putative ribosomal protein L2chromosome 1 CDS334566 828 + 0.472222
NA PBPRA3488 putative D-tyrosyl-tRNA(Tyr) deacylasechromosome 1 CDS3943345 438 - 0.442922
NA PBPRA2653 Putative tRNA pseudouridine synthase Achromosome 1 CDS3071659 786 - 0.459288
NA PBPRA3038 putative ribosomal protein L19chromosome 1 CDS3482462 360 - 0.461111
NA PBPRA0764 putative histidyl-tRNA synthetasechromosome 1 CDS843963 1269 + 0.441292
NA PBPRA0612 putative initiation factor IF-2chromosome 1 CDS667730 2700 + 0.449259
NA PBPRA3580 Putative Methionyl-tRNA formyltransferasechromosome 1 CDS4045989 945 + 0.468783
NA PBPRA0570 putative lysyl-tRNA synthetasechromosome 1 CDS620583 1509 + 0.444003
NA PBPRA2967 putative elongation factor Tschromosome 1 CDS3400503 921 - 0.442997
NA PBPRA0613 putative ribosome-binding factor Achromosome 1 CDS670653 306 + 0.415033
NA PBPRA0319 putative ribosomal protein S10chromosome 1 CDS332677 312 + 0.467949
NA PBPRA1406 Hypothetical proteinchromosome 1 CDS1580967 600 + 0.398333
NA PBPRA2046 hypothetical ribonucleasechromosome 1 CDS2361998 612 + 0.387255
NA PBPRA3169 hypothetical proteinchromosome 1 CDS3598420 630 + 0.452381
AGR_C_16 PBPRA2306 hypothetical proteinchromosome 1 CDS2655037 336 + 0.410714
AGR_PAT_ PBPRA1273 putative translation initiationinhibitor, yjgF familychromosome 1 CDS1444721 393 + 0.445293
ASNS PBPRA2335 putative asparaginyl-tRNA synthetasechromosome 1 CDS2690272 1401 + 0.458244
BB1022 PBPRA2394 Hypothetical ribosomal-protein-serine acetyltransferasechromosome 1 CDS2767128 558 + 0.435484
BFL058 PBPRA0433 putative ribosomal protein S21chromosome 1 CDS448160 216 - 0.490741
BPP0053 PBPRA0341 putative ribosomal protein L36chromosome 1 CDS343192 114 + 0.421053
C3920 PBPRA0616 putative polyribonucleotide nucleotidyltransferasechromosome 1 CDS672632 2124 + 0.454802
CBU1602 PBPRA3386 putative ribosomal protein S6 modification proteinchromosome 1 CDS3828687 906 + 0.443709
EBIG1350 PBPRA3579 Putative polypeptide deformylasechromosome 1 CDS4045463 510 + 0.431373
EBIG1690 PBPRA0614 putative tRNA pseudouridine 5S synthasechromosome 1 CDS670958 951 + 0.435331
ECS0029 PBPRA0591 putative Isoleucyl-tRNA synthetasechromosome 1 CDS643344 2865 + 0.449564
ECS3853 PBPRA0489 hypothetical Tn5 transposasechromosome 1 CDS518870 330 + 0.415152
ECS3993 PBPRA0470 Putative translation initiation inhibitorchromosome 1 CDS494511 387 - 0.413437
ECS5235 PBPRA0483 putative Valyl-tRNA synthetasechromosome 1 CDS510398 2937 - 0.446033
GLYQ PBPRA0056 Putative glycyl-tRNA synthetase, alpha chainchromosome 1 CDS56087 966 - 0.445135
GLYS PBPRA0055 Putative glycyl-tRNA synthetase, beta chainchromosome 1 CDS54008 2070 - 0.443961
HD0203 PBPRA0394 putative Ribosomal protein L21chromosome 1 CDS397360 312 + 0.458333
HD1057 PBPRA1949 Hypothetical pseudouridylate synthasechromosome 1 CDS2247191 723 - 0.396957
HD1407 PBPRA3382 putative elongation factor Pchromosome 1 CDS3823399 585 - 0.425641
HD1953 PBPRA0343 putative ribosomal protein S11chromosome 1 CDS343826 390 + 0.484615
HD1961 PBPRA0337 putative ribosomal subunit protein S5chromosome 1 CDS340694 498 + 0.453815
HEMK PBPRA2844 putative HemK protein, Methylase of polypeptide chain release factorschromosome 1 CDS3293529 849 - 0.466431
ISPLU9A PBPRA2979 hypothetical Tn5 transposasechromosome 1 CDS3413273 1386 + 0.409812
NMB2018 PBPRA2511 putative pseudouridine synthase Rlu family proteinchromosome 1 CDS2904623 741 - 0.422402
PA0668 PBPRA0533 putative tyrosyl-tRNA synthetasechromosome 1 CDS567971 1188 + 0.425084
PA1766 PBPRA1106 conserved hypothetical proteinchromosome 1 CDS1226798 987 - 0.441743
PLU0431 PBPRA0315 putative elongation factor Gchromosome 1 CDS327935 2097 + 0.440153
PLU0589 PBPRA0587 putative ribosomal protein S20chromosome 1 CDS640286 294 - 0.421769
PLU0671 PBPRA2969 putative methionine aminopeptidasechromosome 1 CDS3402524 828 + 0.42029
PLU1257 PBPRA3041 putative ribosomal protein S16chromosome 1 CDS3484191 252 - 0.488095
PLU2669 PBPRA2161 putative threonyl-tRNA synthetasechromosome 1 CDS2485697 978 - 0.45501
PLU2669 PBPRA2160 hypothetical proteinchromosome 1 CDS2485389 240 - 0.408333
PLU2869 PBPRA1534 putative ribosomal protein L25chromosome 1 CDS1737645 330 - 0.436364
PLU3375 PBPRA0693 hypothetical small protein Achromosome 1 CDS768186 357 - 0.392157
PLU3549 PBPRA0569 putative peptide chain release factor 2chromosome 1 CDS619486 1062 + 0.454802
PLU4536 PBPRA0603 23S rRNA methylasechromosome 1 CDS659737 630 + 0.428571
PLU4710 PBPRA0336 putative ribosomal protein L18chromosome 1 CDS340327 354 + 0.502825
PLU4712 PBPRA0334 putative ribosomal protein S8chromosome 1 CDS339379 393 + 0.452926
PLU4713 PBPRA0333 putative ribosomal protein S14chromosome 1 CDS339039 306 + 0.473856
PLU4714 PBPRA0332 putative ribosomal protein L5chromosome 1 CDS338484 540 + 0.42963
PLU4720 PBPRA0326 putative ribosomal protein S3chromosome 1 CDS336048 690 + 0.45942
PLU4736 PBPRA3465 putative tRNA (uracil-5-)-methyltransferasechromosome 1 CDS3919730 1107 + 0.411924
PLU4864 PBPRA0203 putative ribosomal protein L28chromosome 1 CDS212070 252 + 0.472222
PM1397 PBPRA0338 putative ribosomal protein L30/L7Echromosome 1 CDS341188 189 + 0.428571
PM1400 PBPRA0335 putative ribosomal protein L6chromosome 1 CDS339784 534 + 0.44382
PM1406 PBPRA0329 putative ribosomal protein S17chromosome 1 CDS337350 255 + 0.427451
PRFA PBPRA2845 putative peptide chain release factor Achromosome 1 CDS3294377 1089 - 0.44169
PROS PBPRA2944 putative prolyl-tRNA synthetasechromosome 1 CDS3374365 1716 + 0.461538
QUEA PBPRA0742 putativeS-adenosylmethionine:tRNAribosyltransfer ase-isomerasechromosome 1 CDS822468 1104 + 0.415761
R00740 PBPRA2123 hypothetical outer membrane lipoproteinchromosome 1 CDS2442473 399 - 0.441103
RHLE PBPRA1748 putative ATP-dependent RNA helicase, DEAD boxfamilychromosome 1 CDS2003598 1269 + 0.409771
RIMM PBPRA3040 putative 16S rRNA processing protein RimMchromosome 1 CDS3483628 534 - 0.455056
RLUA PBPRA0408 putative ribosomal large subunit pseudouridine synthase Achromosome 1 CDS411383 720 - 0.45
RLUC PBPRA1187 putative 23S rRNA ribosomal pseudouridinesynthasechromosome 1 CDS1337865 924 + 0.422078
RLUD PBPRA3021 putative ribosomal large subunit pseudouridine synthase Dchromosome 1 CDS3463492 975 - 0.447179
RND PBPRA1076 hypothetical ribonuclease Dchromosome 1 CDS1195431 1125 + 0.394667
RNPA PBPRA0004 Putative RNase P protein componentchromosome 1 CDS4097 357 - 0.434174
RPL13 PBPRA3237 putative 50S ribosomal protein L13chromosome 1 CDS3673224 429 - 0.44289
RPLA PBPRA3435 putative ribosomal protein L1chromosome 1 CDS3890233 702 - 0.437322
RPLI PBPRA3336 putative Ribosomal protein L9chromosome 1 CDS3785900 453 - 0.437086
RPLJ PBPRA3434 putative ribosomal protein L10chromosome 1 CDS3889482 558 - 0.464158
RPLO PBPRA0339 putative ribosomal protein L15chromosome 1 CDS341382 435 + 0.482759
RPMA PBPRA0395 putative Ribosomal protein L27chromosome 1 CDS397691 258 + 0.437984
RPS15 PBPRA0615 putative ribosomal protein S15chromosome 1 CDS672077 270 + 0.451852
RPSA PBPRA2450 putative ribosomal protein S1chromosome 1 CDS2834072 1671 - 0.444045
RPSR PBPRA3337 putative ribosomal protein S18chromosome 1 CDS3786390 228 - 0.438596
RS05599 PBPRA1783 hypothetical proteinchromosome 1 CDS2053063 342 - 0.374269
RSUA PBPRA1544 hypothetical 16S rRNA uridine-516 pseudouridylate synthasechromosome 1 CDS1751224 699 + 0.407725
S0138 PBPRA3173 putative polyA polymerasechromosome 1 CDS3601619 1350 + 0.442963
S0162 PBPRA2968 putative 30S ribosomal protein S2chromosome 1 CDS3401469 729 - 0.434842
S0465 PBPRA1098 putative cysteinyl-tRNA synthetasechromosome 1 CDS1216806 1395 + 0.422939
S0624 PBPRA1034 putative glutaminyl-tRNA synthetasechromosome 1 CDS1150392 1668 + 0.404676
S0661 PBPRA2885 putative leucyl-tRNA synthetasechromosome 1 CDS3315411 2577 + 0.43539
S2387 PBPRA1915 putative elongation factor P family proteinchromosome 1 CDS2200939 582 - 0.40378
S3733 PBPRA0258 putative ribosomal protein L31chromosome 1 CDS266433 213 + 0.422535
S4086 PBPRA0198 putative ribonuclease PHchromosome 1 CDS206991 717 + 0.474198
S4411 PBPRA0321 putative ribosomal protein L4chromosome 1 CDS333646 603 + 0.45937
SERS PBPRA1165 Putative seryl-tRNA synthetasechromosome 1 CDS1309717 1293 + 0.45321
SF0048 PBPRA0402 putative dimethyladenosine transferasechromosome 1 CDS403654 861 - 0.447154
SF1207 PBPRA2850 putative peptidyl-tRNA hydrolasechromosome 1 CDS3299955 591 + 0.431472
SF1876 PBPRA1112 Putative aspartyl-tRNA synthetasechromosome 1 CDS1233303 1794 + 0.444816
SF3097 PBPRA0439 putative tRNA nucleotidyltransferasechromosome 1 CDS452363 1236 - 0.461974
SF3418 PBPRA3483 putative heat shock protein 15chromosome 1 CDS3936862 411 + 0.435523
SF3645 PBPRA0229 putative rRNA methylase, SpoU familychromosome 1 CDS236446 480 - 0.460417
SMU.1308 PBPRA3031 putative translation initiation inhibitor, yjgF familychromosome 1 CDS3474238 381 + 0.388451
SO0217 PBPRA3439 putative GTPase-translation elongation factorchromosome 1 CDS3892644 1209 - 0.45244
SO0223 PBPRA3433 putative ribosomal protein L7/L12chromosome 1 CDS3889056 390 - 0.438462
SO0227 PBPRA0314 putative ribosomal protein S7chromosome 1 CDS327386 471 + 0.458599
SO0233 PBPRA0322 putative ribosomal protein L23chromosome 1 CDS334245 303 + 0.432343
SO0235 PBPRA0324 putative ribosomal protein S19chromosome 1 CDS335411 279 + 0.480287
SO0236 PBPRA0325 putative ribosomal protein L22chromosome 1 CDS335700 333 + 0.45045
SO2780 PBPRA1191 putative ribosomal protein L32 (rpL32)chromosome 1 CDS1341142 171 + 0.491228
SO4094 PBPRA3266 putative ribonucleases G and Echromosome 1 CDS3701801 1470 - 0.434014
SO4246 PBPRA0204 putative ribosomal protein L33chromosome 1 CDS212336 168 + 0.410714
STM2568 PBPRA0786 Putative cytosine/adenosine deaminasechromosome 1 CDS870681 516 + 0.476744
STY0210 PBPRA3172 putative glutamyl-tRNA synthetase-relatedproteinchromosome 1 CDS3600511 933 + 0.429796
STY0716 PBPRA2878 putative 2-methylthioadenine synthetasechromosome 1 CDS3308002 1425 + 0.449825
STY2836 PBPRA0562 putative ATP-dependent RNA helicase SrmBchromosome 1 CDS610816 1260 - 0.443651
STY2853 PBPRA3023 hypothetical sigma-54 modulation proteinchromosome 1 CDS3465778 351 + 0.407407
STY4365 PBPRA0327 putative ribosomal protein L16chromosome 1 CDS336749 411 + 0.459854
STY4368 PBPRA0330 putative ribosomal protein L14chromosome 1 CDS337769 372 + 0.473118
STY4809 PBPRA2472 putative tRNA-(MS[2]IO[6]A)-hydroxylasechromosome 1 CDS2863902 792 + 0.421717
T1734 PBPRA1186 Putative ribonuclease Echromosome 1 CDS1334103 3303 - 0.447775
T3238 PBPRA3256 putative sigma-54 modulation proteinchromosome 1 CDS3689867 294 + 0.37415
T4096 PBPRA3581 Putative Sun proteinchromosome 1 CDS4047004 1296 + 0.473765
TGT PBPRA0743 Putative queuine tRNA-ribosyltransferasechromosome 1 CDS823858 1128 + 0.445035
THRS PBPRA2159 putative tRNA synthetasechromosome 1 CDS2484744 438 - 0.415525
TRMD PBPRA3039 putative tRNA (guanine-N1)-methyltransferasechromosome 1 CDS3482852 750 - 0.457333
TTE0716 PBPRA2661 hypothetical proteinchromosome 1 CDS3085280 1362 - 0.405286
TUFB PBPRA0316 putative translation elongation factor TU (EF-Tu-B)chromosome 1 CDS330133 1185 + 0.454008
VCA0474 PBPRA1972 hypothetical acetyltransferasechromosome 1 CDS2269320 480 - 0.35
VCA0627 PBPRA1440 putative RNA methyltransferase, TrmH familychromosome 1 CDS1616510 474 - 0.390295
VP0660 PBPRA0703 hypothetical type IV pilinchromosome 1 CDS778779 369 + 0.392954
VP0750 PBPRA2720 putative 16S rRNA uridine-516 pseudouridylate synthasechromosome 1 CDS3155387 1119 - 0.451296
VP2428 PBPRA1234 putative translation elongation factor EF-Gchromosome 1 CDS1396176 2088 - 0.455939
VP2566 PBPRA3083 putative TrmA family RNA methyltransferasechromosome 1 CDS3522640 1416 - 0.41596
VV0383 PBPRA0328 putative ribosomal protein L29chromosome 1 CDS337156 195 + 0.466667
VV0396 PBPRA0342 putative ribosomal protein S13chromosome 1 CDS343450 357 + 0.45098
VV1227 PBPRA2482 putative pseudouridine synthase family 1 proteinchromosome 1 CDS2875243 1134 - 0.479718
VV12398 PBPRA2158 putative initiation factor IF3chromosome 1 CDS2484189 390 - 0.446154
VV2126 PBPRA2613 putative regulator proteinchromosome 1 CDS3027354 906 + 0.433775
VV2326 PBPRA1148 putative pseudouridine synthase family 1proteinchromosome 1 CDS1288206 651 - 0.453149
VV2561 PBPRA2973 putative pseudouridine synthase Rlu family proteinchromosome 1 CDS3407314 738 - 0.429539
VV2972 PBPRA3325 putative NifR3/Smm1 family proteinchromosome 1 CDS3773714 1041 - 0.436119
VV2984 PBPRA3339 putative ribosomal protein S6chromosome 1 CDS3786944 444 - 0.475225
VV3032 PBPRA0313 putative ribosomal protein S12chromosome 1 CDS326919 375 + 0.464
VV3072 PBPRA3351 putative tRNA delta(2)-isopentenylpyrophosphate transferasechromosome 1 CDS3799320 936 - 0.452991
VV3138 PBPRA3410 putative Dihydrouridine synthasechromosome 1 CDS3861845 966 + 0.47205
Y0104 PBPRA0188 putative tRNA methyltransferasechromosome 1 CDS194046 804 - 0.456468
Y1332 PBPRA0748 putative RNA methyltransferase, TrmH familychromosome 1 CDS829487 732 + 0.422131
Y2053 PBPRA2483 putative translation factorchromosome 1 CDS2876607 621 - 0.433172
Y2271 PBPRA2432 Hypothetical ribosomal-protein-alanine acetyltransferasechromosome 1 CDS2817312 582 - 0.362543
Y4000 PBPRA0331 putative ribosomal protein L24chromosome 1 CDS338152 315 + 0.4
Y4016 PBPRA0346 putative ribosomal protein L17chromosome 1 CDS345910 384 + 0.481771
YCFB PBPRA1147 putative(5-methylaminomethyl-2-thiouridylate)-me thyltransferasechromosome 1 CDS1286747 1134 - 0.421517
YCHF PBPRA2851 putative GTP-binding proteinchromosome 1 CDS3300649 1092 + 0.435897
YFCB PBPRA0967 putative adenine-specific methylasechromosome 1 CDS1069922 933 + 0.434084
YGJO PBPRA0819 Hypothetical methyltransferasechromosome 1 CDS906373 1125 - 0.407111
YJFH PBPRA3340 putative RNA methyltransferase, TrmH familychromosome 1 CDS3787617 738 - 0.451219
YPO0427 PBPRA0527 hypothetical 16S RNA G1207 methylase RsmCchromosome 1 CDS560502 1020 - 0.412745
YPO2161 PBPRA2596 putative L-asparaginase Ichromosome 1 CDS3007980 900 + 0.427778
YPO3504 PBPRA0602 putative RNA-binding proteinchromosome 1 CDS659301 333 - 0.381381
YRDC PBPRA3573 Putative Sua5/YciO/YrdC family proteinchromosome 1 CDS4040665 579 - 0.426598