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2024-05-18 23:31:45

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 186

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dechloromonas aromatica RCB, RCB
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Daro_1810 Translation elongation factor, selenocysteine-specificchromosome CDS1945025 1884 - 0.667728
NA Daro_2869 Pseudouridine synthasechromosome CDS3088823 729 + 0.602195
NA Daro_1247 GCN5-related N-acetyltransferasechromosome CDS1353341 1257 + 0.568815
NA Daro_1656 conserved hypothetical proteinchromosome CDS1780140 957 + 0.607106
NA Daro_0206 RNA-binding S4chromosome CDS222110 369 - 0.623306
NA Daro_0509 Translation initiation factor IF-1chromosome CDS570055 264 - 0.583333
NA Daro_2677 Threonyl-tRNA synthetase, class IIachromosome CDS2872722 1917 - 0.576943
NA Daro_1757 tRNA/rRNA methyltransferase (SpoU)chromosome CDS1887629 768 + 0.641927
NA Daro_1118 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS1220106 1821 - 0.632619
NA Daro_3470 Ribosomal protein L21chromosome CDS3719218 312 + 0.548077
NA Daro_1218 Ribosomal protein S18chromosome CDS1322390 276 + 0.561594
NA Daro_3175 Tyrosyl-tRNA synthetase, class Ibchromosome CDS3413136 1275 + 0.624314
NA Daro_2886 Dihydrouridine synthase, DuSchromosome CDS3107699 960 - 0.622917
NA Daro_0985 conserved hypothetical proteinchromosome CDS1076986 1212 - 0.542079
NA Daro_3769 Glutamyl-tRNA synthetase, class Icchromosome CDS4054447 906 - 0.634658
NA Daro_3447 Glutaminyl-tRNA synthetasechromosome CDS3697142 1806 + 0.624031
NA Daro_3278 Queuine/other tRNA-ribosyltransferase:Queuine tRNA-ribosyltransferasechromosome CDS3529122 1110 + 0.605405
NA Daro_3254 Pseudouridine synthase, Rsuchromosome CDS3502263 576 - 0.588542
NA Daro_3291 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3542104 1098 - 0.581967
NA Daro_0650 Ribosomal protein S9chromosome CDS711964 393 + 0.549618
NA Daro_3064 tRNA (guanine-N1-)-methyltransferasechromosome CDS3306821 765 - 0.606536
NA Daro_3335 Initiation factor 2B alpha/beta/deltachromosome CDS3589537 1089 + 0.681359
NA Daro_0319 Ribosomal protein L3chromosome CDS365985 639 + 0.574335
NA Daro_2999 Ribosomal protein L31chromosome CDS3237789 225 + 0.537778
NA Daro_3065 16S rRNA processing protein RimMchromosome CDS3307582 513 - 0.584795
NA Daro_0222 Small GTP-binding protein domainchromosome CDS242420 2052 + 0.611598
NA Daro_2984 Histidyl-tRNA synthetase, class IIachromosome CDS3221828 1290 - 0.599225
NA Daro_1740 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS1871636 801 - 0.586767
NA Daro_2452 Initiation factor 2:Small GTP-binding protein domainchromosome CDS2651741 2715 - 0.576427
NA Daro_4148 Sigma 54 modulation protein/ribosomal protein S30EAchromosome CDS4447666 327 - 0.541284
NA Daro_2132 Formylmethionine deformylasechromosome CDS2302151 615 - 0.598374
NA Daro_0326 Ribosomal protein L16chromosome CDS369804 414 + 0.586957
NA Daro_3937 Ribosomal protein L11 methyltransferasechromosome CDS4232766 891 - 0.612795
NA Daro_0644 Prolyl-tRNA synthetase, bacterialchromosome CDS707027 1731 - 0.581167
NA Daro_4196 Endoribonuclease L-PSPchromosome CDS4492001 1005 - 0.61592
NA Daro_0333 Ribosomal protein S8chromosome CDS372405 396 + 0.555556
NA Daro_0305 Translation elongation factor Tu:Small GTP-binding protein domainchromosome CDS347739 1191 + 0.598657
NA Daro_3277 Queuosine biosynthesis proteinchromosome CDS3528074 1059 + 0.625118
NA Daro_4154 Pseudouridine synthasechromosome CDS4452193 657 + 0.619483
NA Daro_0317 Translation elongation factor Tu:Small GTP-binding protein domainchromosome CDS364312 1191 + 0.594458
NA Daro_0851 23S rRNA methyltransferase/RumAchromosome CDS923440 1299 + 0.601232
NA Daro_0005 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS5976 453 + 0.593819
NA Daro_2131 hypothetical proteinchromosome CDS2301348 411 - 0.588808
NA Daro_1742 Ribosomal protein S2, bacterial and organelle formchromosome CDS1873667 747 + 0.563588
NA Daro_1604 Pseudouridine synthase, RluDchromosome CDS1721425 957 + 0.599791
NA Daro_3046 Isoleucyl-tRNA synthetase, class Iachromosome CDS3288449 2799 - 0.609146
NA Daro_1823 tRNA (uracil-5-)-methyltransferasechromosome CDS1960388 1089 - 0.620753
NA Daro_0016 Pseudouridine synthase, Rsuchromosome CDS20514 708 + 0.586158
NA Daro_0560 hypothetical proteinchromosome CDS623325 480 + 0.635417
NA Daro_3665 Dihydrouridine synthase TIM-barrel protein nifR3chromosome CDS3939779 1014 + 0.614398
NA Daro_0335 Ribosomal protein L18chromosome CDS373351 357 + 0.588235
NA Daro_2455 Pseudouridine synthase, Rsuchromosome CDS2656524 1023 - 0.599218
NA Daro_0328 Ribosomal protein S17chromosome CDS370411 267 + 0.524345
NA Daro_2969 RNA methyltransferase TrmH, group 3chromosome CDS3206473 732 - 0.617486
NA Daro_1216 Ribosomal protein S6chromosome CDS1321681 384 + 0.570312
NA Daro_0311 Ribosomal protein L7/L12chromosome CDS351974 372 + 0.567204
NA Daro_0028 Fmu, rRNA SAM-dependent methyltransferasechromosome CDS31839 1260 + 0.633333
NA Daro_0355 YjgF-like proteinchromosome CDS387078 384 + 0.630208
NA Daro_2461 Sua5/YciO/YrdC/YwlCchromosome CDS2661062 627 - 0.596491
NA Daro_3035 Ribosomal protein S20pchromosome CDS3277695 270 - 0.588889
NA Daro_0919 Cysteinyl-tRNA synthetase, class Iachromosome CDS994757 1371 + 0.571116
NA Daro_3063 Ribosomal protein L19chromosome CDS3306414 381 - 0.559055
NA Daro_0878 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS950826 1278 + 0.624413
NA Daro_0572 Helix-turn-helix protein, CopGchromosome CDS638757 195 + 0.533333
NA Daro_0935 SmpA/OmlAchromosome CDS1013487 483 + 0.583851
NA Daro_3534 Glycyl-tRNA synthetase, alpha subunitchromosome CDS3785185 984 + 0.618902
NA Daro_0309 Ribosomal protein L1, bacterial and chloroplast formchromosome CDS350517 696 + 0.586207
NA Daro_0021 Formylmethionine deformylasechromosome CDS27075 504 + 0.55754
NA Daro_3303 Alanyl-tRNA synthetase, class IIcchromosome CDS3551266 2616 - 0.618119
NA Daro_2005 Ribonuclease E and Gchromosome CDS2160082 2613 - 0.595484
NA Daro_0118 Glutamyl-tRNA(Gln) amidotransferase A subunitchromosome CDS134341 1458 + 0.589163
NA Daro_1975 2',5' RNA ligasechromosome CDS2123554 582 + 0.606529
NA Daro_4135 Polynucleotide adenylyltransferase region:Metal-dependent phosphohydrolase, HD subdomainchromosome CDS4435279 1239 + 0.633575
NA Daro_0343 Ribosomal protein S11chromosome CDS377072 390 + 0.582051
NA Daro_3684 Modification methylase HemKchromosome CDS3958355 813 - 0.635916
NA Daro_1337 Amidasechromosome CDS1454096 1533 + 0.551859
NA Daro_2451 Ribosome-binding factor Achromosome CDS2651370 372 - 0.561828
NA Daro_3731 Ribosomal protein L25chromosome CDS4009962 612 + 0.593137
NA Daro_3144 Ribosomal protein L33chromosome CDS3384594 168 + 0.488095
NA Daro_0316 Translation elongation factor G:Small GTP-binding protein domainchromosome CDS362203 2094 + 0.557784
NA Daro_3661 Nucleotidyl transferasechromosome CDS3935666 672 + 0.645833
NA Daro_0010 Glutathione synthetase, prokaryoticchromosome CDS13975 1020 - 0.614706
NA Daro_3851 Ribonuclease PHchromosome CDS4144744 717 + 0.663877
NA Daro_3159 Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2pchromosome CDS3396171 1263 - 0.630245
NA Daro_2459 Tryptophanyl-tRNA synthetase, class Ibchromosome CDS2659191 1203 - 0.588529
NA Daro_0336 Ribosomal protein S5, bacterial and organelle formchromosome CDS373735 528 + 0.570076
NA Daro_1743 Elongation factor Tschromosome CDS1874471 900 + 0.58
NA Daro_0314 Ribosomal protein S12, bacterial and chloroplast formchromosome CDS361226 378 + 0.582011
NA Daro_0649 Ribosomal protein L13, bacterial and organelle formchromosome CDS711526 429 + 0.559441
NA Daro_2730 Peptide chain release factor 3:Small GTP-binding protein domainchromosome CDS2925140 1575 - 0.614603
NA Daro_0992 Beta-lactamase-like:RNA-metabolisingmetallo-beta -lactamasechromosome CDS1085593 1413 + 0.605096
NA Daro_0308 Ribosomal protein L11, bacterialchromosome CDS350083 432 + 0.576389
NA Daro_2449 Ribosomal protein S15, bacterial chloroplast and mitochondrial typechromosome CDS2650092 270 - 0.548148
NA Daro_0310 Ribosomal protein L10chromosome CDS351438 498 + 0.604418
NA Daro_4203 ribonuclease P proteinchromosome CDS4500496 372 - 0.577957
NA Daro_0332 Ribosomal protein S14chromosome CDS372084 306 + 0.584967
NA Daro_2006 Pseudouridine synthase, RluDchromosome CDS2163093 1005 + 0.557214
NA Daro_0529 Ribosomal protein S21chromosome CDS590414 213 - 0.57277
NA Daro_2035 Elongation factor Pchromosome CDS2185865 558 - 0.537634
NA Daro_3535 Glycyl-tRNA synthetase, beta subunitchromosome CDS3786170 2139 + 0.656849
NA Daro_0331 Ribosomal protein L5chromosome CDS371537 540 + 0.505556
NA Daro_1219 Ribosomal protein L9chromosome CDS1322684 447 + 0.581656
NA Daro_2450 tRNA pseudouridine synthase Bchromosome CDS2650463 900 - 0.577778
NA Daro_1129 Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminalchromosome CDS1235629 1401 + 0.610992
NA Daro_3866 Arginyl-tRNA synthetase, class Icchromosome CDS4156345 1764 - 0.609977
NA Daro_3616 hypothetical proteinchromosome CDS3883139 573 - 0.600349
NA Daro_0180 Ribonuclease E and Gchromosome CDS198087 1452 + 0.595041
NA Daro_0341 Ribosomal protein L36chromosome CDS376532 114 + 0.526316
NA Daro_0327 Ribosomal protein L29chromosome CDS370220 195 + 0.533333
NA Daro_2673 Phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2870386 1047 - 0.572111
NA Daro_2260 cytochrome c family proteinchromosome CDS2447347 648 + 0.615741
NA Daro_0329 Ribosomal protein L14, bacterial and organelle formchromosome CDS370831 369 + 0.569106
NA Daro_0344 Ribosomal protein S4, bacterial and organelle formchromosome CDS377474 630 + 0.587302
NA Daro_2202 Cytidine/deoxycytidylate deaminase, zinc-binding regionchromosome CDS2376705 441 - 0.598639
NA Daro_0324 Ribosomal protein L22, bacterial and organelle formchromosome CDS368678 330 + 0.554545
NA Daro_0318 Ribosomal protein S10, bacterial formchromosome CDS365564 312 + 0.541667
NA Daro_3687 Peptide chain release factor 1chromosome CDS3962020 1083 - 0.618652
NA Daro_0544 Leucyl-tRNA synthetase bacterial/mitochondrial, class Iachromosome CDS601325 2631 - 0.63702
NA Daro_0337 Ribosomal protein L30, bacterialchromosome CDS374266 183 + 0.52459
NA Daro_0634 Aspartyl-tRNA synthetase bacterial/mitochondrial typechromosome CDS696265 1800 - 0.615556
NA Daro_0322 Ribosomal protein L2, bacterial and organelle formchromosome CDS367555 828 + 0.599034
NA Daro_2674 Ribosomal protein L20, bacterial and organelle formchromosome CDS2871514 360 - 0.583333
NA Daro_0120 Glutamyl-tRNA(Gln) amidotransferase B subunitchromosome CDS136344 1455 + 0.571821
NA Daro_3171 tRNA isopentenyltransferasechromosome CDS3409011 945 + 0.637037
NA Daro_3116 tRNA/rRNA methyltransferase (SpoU)chromosome CDS3358188 495 - 0.571717
NA Daro_2751 Protein of unknown function UPF0004:Conserved hypothetical protein 1125chromosome CDS2945820 1323 - 0.613757
NA Daro_0321 Ribosomal L23 proteinchromosome CDS367253 303 + 0.511551
NA Daro_2470 3'-5' exonucleasechromosome CDS2670569 654 - 0.614679
NA Daro_0315 Ribosomal protein S7, bacterial and organelle formchromosome CDS361714 471 + 0.573248
NA Daro_3527 Protein of unknown function UPF0004:tRNA-i(6)A37 modification enzyme MiaBchromosome CDS3778444 1338 + 0.592676
NA Daro_0022 Methionyl-tRNA formyltransferasechromosome CDS27575 924 + 0.623377
NA Daro_0943 Ribosomal RNA methyltransferase RrmJ/FtsJchromosome CDS1023243 618 + 0.546926
NA Daro_2448 3' exoribonuclease:RNA binding S1:KH, type 1chromosome CDS2647811 2148 - 0.586592
NA Daro_3471 Ribosomal protein L27chromosome CDS3719551 264 + 0.602273
NA Daro_0075 Amidasechromosome CDS92156 1803 + 0.664448
NA Daro_3182 Poly(A) polymerase, PcnBchromosome CDS3420889 1344 + 0.638393
NA Daro_0325 ribosomal protein S3chromosome CDS369017 786 + 0.562341
NA Daro_1300 Seryl-tRNA synthetase, class IIachromosome CDS1410400 1284 + 0.598131
NA Daro_1256 Nucleotidyl transferasechromosome CDS1364182 774 + 0.590439
NA Daro_1280 Ribosomal protein S1chromosome CDS1391018 1680 + 0.564286
NA Daro_0346 Ribosomal protein L17chromosome CDS379158 399 + 0.581454
NA Daro_2676 Initiation factor 3chromosome CDS2872168 414 - 0.548309
NA Daro_1682 RNA methyltransferase TrmH, group 1chromosome CDS1810169 765 + 0.623529
NA Daro_1360 Amidasechromosome CDS1479748 1401 + 0.563883
NA Daro_3066 Ribosomal protein S16chromosome CDS3308104 255 - 0.592157
NA Daro_1723 Modification methylase HemKchromosome CDS1851297 900 - 0.602222
NA Daro_3455 Endoribonuclease L-PSPchromosome CDS3703703 354 - 0.562147
NA Daro_0942 Protein of unknown function UPF0044chromosome CDS1022849 363 - 0.567493
NA Daro_3963 Enoyl-CoA hydratase/isomerase:Formyl transferase, N-terminal:Formyl transferase, C-terminalchromosome CDS4260935 1677 - 0.617174
NA Daro_3468 Pseudouridine synthase, Rsuchromosome CDS3717609 1140 - 0.62807
NA Daro_2512 hypothetical proteinchromosome CDS2709667 516 + 0.577519
NA Daro_1731 Cytidine/deoxycytidylate deaminase, zinc-binding regionchromosome CDS1858714 474 - 0.637131
NA Daro_2675 Ribosomal protein L35chromosome CDS2871885 198 - 0.580808
NA Daro_0330 Ribosomal protein L24chromosome CDS371207 321 + 0.523364
NA Daro_0323 Ribosomal protein S19, bacterial and organelle formchromosome CDS368393 276 + 0.561594
NA Daro_1820 Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminalchromosome CDS1956783 1344 - 0.65625
NA Daro_2485 Peptidase M24A, methionine aminopeptidase, subfamily 1chromosome CDS2683811 825 - 0.557576
NA Daro_3656 RRNA 16S rRNA dimethylasechromosome CDS3928927 768 - 0.585938
NA Daro_0338 Ribosomal protein L15, bacterial formchromosome CDS374452 435 + 0.604598
NA Daro_0519 Methyltransferase smallchromosome CDS580277 1155 + 0.670996
NA Daro_0868 tRNA pseudouridine synthasechromosome CDS941143 789 + 0.594423
NA Daro_1745 Ribosome recycling factorchromosome CDS1876077 597 + 0.549414
NA Daro_1576 hypothetical proteinchromosome CDS1692705 471 + 0.556263
NA Daro_0689 hypothetical proteinchromosome CDS759841 354 - 0.596045
NA Daro_0616 RNA methyltransferase TrmH, group 2chromosome CDS683276 465 - 0.610753
NA Daro_0452 Sua5/YciO/YrdC/YwlCchromosome CDS495189 996 + 0.673695
NA Daro_0342 Ribosomal protein S13chromosome CDS376697 363 + 0.581267
NA Daro_3085 Valyl-tRNA synthetase, class Iachromosome CDS3324199 2832 + 0.601695
NA Daro_2013 Ribosomal protein S32, bacterial and organelle formchromosome CDS2167948 180 + 0.572222
NA Daro_2054 hypothetical proteinchromosome CDS2212958 990 + 0.629293
NA Daro_4204 Ribosomal protein L34chromosome CDS4500885 135 - 0.622222
NA Daro_0536 Class I peptide chain release factorchromosome CDS594962 402 - 0.634328
NA Daro_0184 Hemolysin Achromosome CDS202290 822 - 0.613139
NA Daro_1321 Glutamyl-tRNA synthetase bacterial/mitochondrialchromosome CDS1438601 1395 - 0.589247
NA Daro_0340 Translation initiation factor IF-1chromosome CDS376238 219 + 0.479452
NA Daro_2844 Peptide chain release factor 2chromosome CDS3060051 978 + 0.615542
NA Daro_2192 hypothetical proteinchromosome CDS2369211 591 + 0.529611
NA Daro_3733 Conserved hypothetical protein 92chromosome CDS4011232 1092 + 0.60348
NA Daro_3310 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminalchromosome CDS3560036 1524 + 0.633202
NA Daro_0121 conserved hypothetical proteinchromosome CDS137799 648 - 0.589506
NA Daro_2848 Lysyl-tRNA synthetase, class-2chromosome CDS3065073 1506 + 0.598938
NA Daro_3143 Ribosomal protein L28chromosome CDS3384342 234 + 0.576923
NA Daro_3732 Peptidyl-tRNA hydrolasechromosome CDS4010643 579 + 0.62867
NA Daro_0320 Ribosomal protein L4/L1echromosome CDS366633 624 + 0.557692
NA Daro_0117 Glutamyl-tRNA(Gln) amidotransferase C subunitchromosome CDS134057 288 + 0.579861
NA Daro_0334 Ribosomal protein L6chromosome CDS372811 531 + 0.557439