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2024-05-17 16:04:13

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 206

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pseudomonas syringae pv. phaseolicola 1448A, 1448A; BAA-978
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSPPH_3792 MiaB-like tRNA modifying enzyme YliG, TIGR01125chromosome CDS4345006 1344 + 0.595238
NA PSPPH_1306 RNA methyltransferase, TrmH family, group 1chromosome CDS1517951 774 + 0.608527
NA PSPPH_0911 acetyltransferase, GNAT familychromosome CDS1085449 564 - 0.578014
NA PSPPH_4351 acetyltransferase, GNAT familychromosome CDS4973704 570 - 0.585965
NA PSPPH_1898 tRNA-dihydrouridine synthase Achromosome CDS2201648 1020 + 0.570588
NA PSPPH_2987 tonB protein, putativechromosome CDS3468405 843 - 0.631079
NA PSPPH_1242 amidase family proteinchromosome CDS1449051 1818 - 0.627613
NA PSPPH_0990 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5chromosome CDS1184418 612 - 0.575163
NA PSPPH_3976 amidase family proteinchromosome CDS4539751 1794 + 0.613712
NA PSPPH_3535 peptidyl-tRNA hydrolase domain proteinchromosome CDS4074844 465 - 0.604301
NA PSPPH_0494 conserved hypothetical proteinchromosome CDS566941 2646 + 0.550642
NA PSPPH_3659 metallo-beta-lactamase family, beta-CASP subfamilychromosome CDS4202762 1437 - 0.551844
NA PSPPH_4354 ATP-dependent RNA helicase rhlE, putativechromosome CDS4976879 1353 - 0.597931
NA PSPPH_0024 SUA5/yciO/yrdC family domain proteinchromosome CDS29454 558 + 0.629032
NA PSPPH_1809 modification methylase, HemK familychromosome CDS2111974 909 + 0.591859
NA PSPPH_5020 heat shock protein 15chromosome CDS5686762 408 + 0.588235
NA PSPPH_3634 ATP-dependent RNA helicase, DEAD box familychromosome CDS4178536 1713 - 0.615295
NA PSPPH_4947 hypothetical proteinchromosome CDS5620635 297 + 0.56229
NA PSPPH_1753 acetyltransferase, GNAT familychromosome CDS2052381 516 - 0.585271
NA PSPPH_5107 conserved hypothetical proteinchromosome CDS5794573 378 - 0.55291
NA PSPPH_2350 endoribonuclease L-PSPchromosome CDS2725432 435 + 0.618391
NA PSPPH_4337 16S rRNA methylase RsmCchromosome CDS4957795 1056 + 0.625947
NA PSPPH_3542 Sua5/YciO/YrdC/YwlC family proteinchromosome CDS4080444 630 - 0.619048
NA PSPPH_0401 amidase family proteinchromosome CDS461785 1545 + 0.557929
NA PSPPH_1046 endoribonuclease L-PSP family proteinchromosome CDS1238268 384 - 0.588542
NA PSPPH_4912 RNA methyltransferase, TrmH family, group 2chromosome CDS5585791 456 + 0.598684
NA PSPPH_3668 initiation factor 2 subunit familychromosome CDS4215140 1077 - 0.624884
NA PSPPH_4423 translation initiation factor SUI1, putativechromosome CDS5048970 372 + 0.602151
NA PSPPH_0196 endoribonuclease L-PSP, putativechromosome CDS234025 381 - 0.56168
NA PSPPH_5141 acetyltransferase, GNAT familychromosome CDS5830465 669 + 0.58296
NA PSPPH_0961 glucose-1-phosphate cytidylyltransferasechromosome CDS1142615 768 + 0.532552
NA PSPPH_3915 50S ribosomal protein L31 type Bchromosome CDS4473643 135 - 0.622222
NA PSPPH_0112 conserved hypothetical proteinchromosome CDS128727 720 + 0.519444
NA PSPPH_2944 endoribonuclease L-PSP family proteinchromosome CDS3416990 399 + 0.606516
NA PSPPH_2187 amidase family proteinchromosome CDS2543246 1395 + 0.619355
NA PSPPH_4367 endoribonuclease L-PSP family proteinchromosome CDS4989794 384 - 0.619792
NA PSPPH_0157 conserved hypothetical proteinchromosome CDS184846 549 + 0.604736
NA PSPPH_1553 conserved hypothetical proteinchromosome CDS1804731 501 - 0.590818
NA PSPPH_0638 nucleotidyltransferase family proteinchromosome CDS755522 672 + 0.616071
NA PSPPH_0682 Protein of unknown function (DUF805) familychromosome CDS796442 906 - 0.578366
NA PSPPH_1494 hypothetical proteinchromosome CDS1735420 702 - 0.581197
NA PSPPH_2438 possible translation initiation inhibitorchromosome CDS2820463 405 - 0.582716
NA PSPPH_3935 amidase family proteinchromosome CDS4495716 1374 - 0.636827
NA PSPPH_1948 tRNA-dihydrouridine synthase Cchromosome CDS2293774 966 + 0.604555
NA PSPPH_5181 modification methylase, HemK familychromosome CDS5880152 945 + 0.598942
NA PSPPH_0612 hypothetical proteinchromosome CDS722998 1872 + 0.471688
NA PSPPH_1367 conserved hypothetical proteinchromosome CDS1586457 879 - 0.572241
NA PSPPH_2683 ribosomal protein S6 modification enzymechromosome CDS3106019 1587 - 0.568368
NA PSPPH_0449 ATP-dependent RNA helicase RhlE, putativechromosome CDS510601 1878 - 0.631523
NA PSPPH_1077 hypothetical proteinchromosome CDS1266510 546 + 0.510989
NA PSPPH_3794 S4 domain proteinchromosome CDS4346985 711 + 0.585091
NA PSPPH_2108 RNA pseudouridine synthase family proteinchromosome CDS2468571 891 + 0.607183
NA PSPPH_1339 cytidine/deoxycytidylate deaminase family proteinchromosome CDS1554911 510 + 0.603922
NA PSPPH_2976 amidasechromosome CDS3455434 1536 - 0.621745
NA PSPPH_4200 conserved hypothetical protein TIGR00253chromosome CDS4787338 312 + 0.535256
NA PSPPH_2664 endoribonuclease L-PSP family proteinchromosome CDS3085692 387 + 0.599483
NA PSPPH_1632 ribonuclease, Rne/Rng family proteinchromosome CDS1893648 3390 - 0.612684
NA PSPPH_0575 RNA methyltransferase, TrmH family, group 3chromosome CDS676348 762 + 0.627297
NA PSPPH_3321 endoribonuclease L-PSP family proteinchromosome CDS3842637 393 + 0.618321
NA PSPPH_0224 endoribonuclease L-PSP family proteinchromosome CDS262056 354 + 0.590395
NA PSPPH_1390 mRNA 3''''-end processing factorchromosome CDS1613399 1047 - 0.617956
NA PSPPH_0860 tRNA synthetase domain proteinchromosome CDS1029847 1023 - 0.613881
alaS PSPPH_3512 alanyl-tRNA synthetasechromosome CDS4048305 2625 - 0.590095
ansA PSPPH_5135 L-asparaginase Ichromosome CDS5824379 1005 + 0.638806
argS PSPPH_0384 arginyl-tRNA synthetasechromosome CDS437168 1737 - 0.605066
arnA PSPPH_2804 UDP-D-glucuronate dehydrogenasechromosome CDS3248304 1992 + 0.573795
aspS PSPPH_3776 aspartyl-tRNA synthetasechromosome CDS4325044 1776 - 0.600225
cafA PSPPH_4168 ribonuclease Gchromosome CDS4753228 1458 - 0.57476
cca PSPPH_0626 tRNA nucleotidyltransferasechromosome CDS740237 1230 - 0.600813
cdd PSPPH_1477 cytosine deaminasechromosome CDS1716268 438 + 0.579909
cysS PSPPH_1679 cysteinyl-tRNA synthetasechromosome CDS1941626 1383 + 0.597975
dbpA PSPPH_0506 ATP-independent RNA helicase DbpAchromosome CDS586776 1440 - 0.608333
def1 PSPPH_0021 peptide deformylasechromosome CDS26516 507 - 0.550296
def2 PSPPH_1473 peptide deformylasechromosome CDS1713495 540 + 0.585185
dtd PSPPH_0358 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS409775 438 + 0.557078
dusB PSPPH_4447 tRNA-dihydrouridine synthase Bchromosome CDS5079900 1014 + 0.596647
efp PSPPH_3648 translation elongation factor Pchromosome CDS4192276 570 - 0.529825
fmt PSPPH_0020 methionyl-tRNA formyltransferasechromosome CDS25512 945 - 0.639153
frr PSPPH_3837 ribosome recycling factorchromosome CDS4392387 558 - 0.5681
fusA PSPPH_4595 translation elongation factor Gchromosome CDS5228827 2106 - 0.543685
gatA PSPPH_4174 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS4758680 1452 + 0.619146
gatB PSPPH_4175 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS4760142 1446 + 0.595436
gatC PSPPH_4173 glutamyl-tRNA(Gln) amidotransferase, C subunitchromosome CDS4758378 288 + 0.59375
glnS PSPPH_1678 glutaminyl-tRNA synthetasechromosome CDS1939897 1710 + 0.584211
gltX PSPPH_1942 glutamyl-tRNA synthetasechromosome CDS2290845 1482 + 0.601889
glyQ PSPPH_0012 glycyl-tRNA synthetase, alpha subunitchromosome CDS16405 1008 - 0.603175
glyS PSPPH_0011 glycyl-tRNA synthetase, beta subunitchromosome CDS14354 2055 - 0.605353
gshB PSPPH_0478 glutathione synthetasechromosome CDS540756 960 - 0.608333
hemK PSPPH_0998 hemK proteinchromosome CDS1192055 834 + 0.616307
hisS PSPPH_1321 histidyl-tRNA synthetasechromosome CDS1529898 1290 + 0.577519
ileS PSPPH_0721 isoleucyl-tRNA synthetasechromosome CDS844080 2832 + 0.600989
infA PSPPH_3096 translation initiation factor IF-1chromosome CDS3593157 219 + 0.538813
infB PSPPH_4189 translation initiation factor IF-2chromosome CDS4776066 2532 - 0.597156
infC PSPPH_2136 translation initiation factor IF-3chromosome CDS2493102 534 + 0.522472
kptA PSPPH_4372 RNA 2'-phosphotransferasechromosome CDS4994087 567 + 0.546737
ksgA PSPPH_0633 dimethyladenosine transferasechromosome CDS748430 807 - 0.599752
leuS PSPPH_4394 leucyl-tRNA synthetasechromosome CDS5017473 2607 + 0.602992
lysS PSPPH_3873 lysyl-tRNA synthetasechromosome CDS4426618 1503 - 0.591484
map1 PSPPH_2120 methionine aminopeptidase, type Ichromosome CDS2479220 792 + 0.563131
map2 PSPPH_3841 methionine aminopeptidase, type Ichromosome CDS4396000 783 + 0.564496
mdcE PSPPH_0437 malonate decarboxylase, gamma subunitchromosome CDS499119 801 + 0.626717
mets PSPPH_2412 unnamed protein productchromosome CDS2787898 1500 + 0.610667
miaA PSPPH_0564 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS663341 972 + 0.581276
miaB PSPPH_4387 tRNA-i(6)A37 thiotransferase enzyme MiaBchromosome CDS5010490 1329 + 0.602709
miaE PSPPH_3556 tRNA-(ms[2]io[6]A)-hydroxylasechromosome CDS4092078 648 - 0.566358
omlA PSPPH_4210 outer membrane lipoprotein OmlAchromosome CDS4800318 522 + 0.56705
osmE PSPPH_4489 osmotically-inducible lipoprotein Echromosome CDS5123905 339 + 0.545723
pcnB PSPPH_0856 poly(A) polymerasechromosome CDS1023074 1476 - 0.590786
pheS PSPPH_2139 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS2494381 1017 + 0.577188
pnp PSPPH_4185 polyribonucleotide nucleotidyltransferasechromosome CDS4771859 2106 - 0.583571
prfA PSPPH_0997 peptide chain release factor 1chromosome CDS1190972 1083 + 0.600185
prfB PSPPH_3874 peptide chain release factor 2, programmed frameshiftchromosome CDS4428190 1108 - 0.583032
prfC PSPPH_4280 peptide chain release factor 3chromosome CDS4887899 1584 + 0.594066
prmA PSPPH_4445 ribosomal protein L11 methyltransferasechromosome CDS5077369 879 + 0.617747
proS PSPPH_3783 prolyl-tRNA synthetasechromosome CDS4332394 1716 + 0.583916
pth PSPPH_0989 peptidyl-tRNA hydrolasechromosome CDS1183669 585 - 0.598291
queA PSPPH_1299 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS1510769 1065 + 0.624413
rbfA PSPPH_4188 ribosome-binding factor Achromosome CDS4775490 417 - 0.580336
relE PSPPH_0160 addiction module toxin RelEchromosome CDS186360 291 + 0.512028
rhlB PSPPH_1128 ATP-dependent RNA helicase RhlBchromosome CDS1326818 1449 - 0.596963
rimJ PSPPH_3302 ribosomal protein alanine acetyltransferasechromosome CDS3826292 546 - 0.549451
rimK PSPPH_5017 ribosomal protein S6 modification proteinchromosome CDS5684414 906 - 0.589404
rimM PSPPH_1355 16S rRNA processing protein RimMchromosome CDS1571950 540 + 0.535185
rluA PSPPH_1603 ribosomal large subunit pseudouridine synthase Achromosome CDS1865081 714 - 0.613445
rluB PSPPH_3538 ribosomal large subunit pseudouridine synthase Bchromosome CDS4076970 1227 - 0.620212
rluC PSPPH_1633 ribosomal large subunit pseudouridine synthase Cchromosome CDS1897707 957 + 0.594566
rluE PSPPH_4378 ribosomal large subunit pseudouridine synthase Echromosome CDS4999805 633 - 0.636651
rmf PSPPH_2078 ribosome modulation factor-related proteinchromosome CDS2437666 327 - 0.553517
rnd PSPPH_1547 ribonuclease Dchromosome CDS1800485 1134 + 0.607584
rnpA PSPPH_5222 ribonuclease P protein componentchromosome CDS5926377 402 - 0.534826
rph PSPPH_0201 ribonuclease PHchromosome CDS238677 885 + 0.612429
rplA PSPPH_4602 ribosomal protein L1chromosome CDS5241832 696 - 0.553161
rplB PSPPH_4589 ribosomal protein L2chromosome CDS5224682 825 - 0.567273
rplC PSPPH_4592 ribosomal protein L3chromosome CDS5226432 636 - 0.558176
rplD PSPPH_4591 ribosomal protein L4chromosome CDS5225817 603 - 0.545605
rplE PSPPH_4580 ribosomal protein L5chromosome CDS5221180 540 - 0.525926
rplF PSPPH_4577 ribosomal protein L6chromosome CDS5219702 540 - 0.559259
rplI PSPPH_0579 ribosomal protein L9chromosome CDS678963 447 + 0.565996
rplJ PSPPH_4601 ribosomal protein L10chromosome CDS5241130 501 - 0.552894
rplK PSPPH_4603 ribosomal protein L11chromosome CDS5242527 432 - 0.541667
rplL PSPPH_4600 ribosomal protein L7/L12chromosome CDS5240685 366 - 0.521858
rplM PSPPH_4126 ribosomal protein L13chromosome CDS4711669 429 - 0.545455
rplN PSPPH_4582 ribosomal protein L14chromosome CDS5222066 369 - 0.536585
rplO PSPPH_4573 ribosomal protein L15chromosome CDS5218220 435 - 0.574713
rplP PSPPH_4585 ribosomal protein L16chromosome CDS5222918 414 - 0.562802
rplQ PSPPH_4566 ribosomal protein L17chromosome CDS5213742 387 - 0.565891
rplR PSPPH_4576 ribosomal protein L18chromosome CDS5219341 351 - 0.589744
rplS PSPPH_1357 ribosomal protein L19chromosome CDS1573292 351 + 0.518519
rplT PSPPH_2138 ribosomal protein L20chromosome CDS2493920 357 + 0.526611
rplU PSPPH_0713 ribosomal protein L21chromosome CDS836829 459 + 0.520697
rplV PSPPH_4587 ribosomal protein L22chromosome CDS5224044 333 - 0.564565
rplW PSPPH_4590 ribosomal protein L23chromosome CDS5225521 300 - 0.506667
rplX PSPPH_4581 ribosomal protein L24chromosome CDS5221740 315 - 0.533333
rpmA PSPPH_0714 ribosomal protein L27chromosome CDS837320 276 + 0.568841
rpmB PSPPH_0212 ribosomal protein L28chromosome CDS250536 234 + 0.508547
rpmC PSPPH_4584 ribosomal protein L29chromosome CDS5222727 192 - 0.520833
rpmD PSPPH_4574 ribosomal protein L30chromosome CDS5218658 177 - 0.497175
rpmE PSPPH_0386 ribosomal protein L31chromosome CDS441391 222 + 0.567568
rpmF PSPPH_1638 ribosomal protein L32chromosome CDS1901620 183 + 0.535519
rpmG PSPPH_0213 ribosomal protein L33chromosome CDS250781 156 + 0.442308
rpmH PSPPH_5223 ribosomal protein L34chromosome CDS5926795 135 - 0.592593
rpmI PSPPH_2137 ribosomal protein L35chromosome CDS2493696 195 + 0.507692
rpmJ PSPPH_4571 ribosomal protein L36chromosome CDS5216740 117 - 0.512821
rpsA PSPPH_3662 ribosomal protein S1chromosome CDS4205504 1692 - 0.549054
rpsB PSPPH_3840 ribosomal protein S2chromosome CDS4394944 744 - 0.544355
rpsC PSPPH_4586 ribosomal protein S3chromosome CDS5223344 687 - 0.528384
rpsD PSPPH_4568 ribosomal protein S4chromosome CDS5215194 621 - 0.533011
rpsE PSPPH_4575 ribosomal protein S5chromosome CDS5218837 501 - 0.542914
rpsF PSPPH_0576 ribosomal protein S6chromosome CDS677323 426 + 0.553991
rpsG PSPPH_4596 ribosomal protein S7chromosome CDS5230963 471 - 0.564756
rpsH PSPPH_4578 ribosomal protein S8chromosome CDS5220254 393 - 0.53944
rpsI PSPPH_4125 ribosomal protein S9chromosome CDS4711262 393 - 0.559796
rpsJ PSPPH_4593 ribosomal protein S10chromosome CDS5227149 393 - 0.521628
rpsK PSPPH_4569 ribosomal protein S11chromosome CDS5215833 390 - 0.569231
rpsL PSPPH_4597 ribosomal protein S12chromosome CDS5231556 372 - 0.548387
rpsM PSPPH_4570 ribosomal protein S13chromosome CDS5216253 357 - 0.532213
rpsN PSPPH_4579 ribosomal protein S14chromosome CDS5220861 306 - 0.575163
rpsO PSPPH_4186 ribosomal protein S15chromosome CDS4774140 270 - 0.537037
rpsP PSPPH_1354 ribosomal protein S16chromosome CDS1571687 258 + 0.565891
rpsQ PSPPH_4583 ribosomal protein S17chromosome CDS5222458 267 - 0.52809
rpsR PSPPH_0577 ribosomal protein S18chromosome CDS677777 231 + 0.549784
rpsS PSPPH_4588 ribosomal protein S19chromosome CDS5224390 276 - 0.5
rpsT PSPPH_0718 ribosomal protein S20chromosome CDS840943 279 - 0.519713
rpsU PSPPH_0621 ribosomal protein S21chromosome CDS737153 216 - 0.555556
rrmJ PSPPH_4199 ribosomal RNA large subunit methyltransferase Jchromosome CDS4786584 651 - 0.545315
rsmC PSPPH_1037 ribosomal RNA small subunit methyltransferase Cchromosome CDS1225014 999 - 0.615616
rsuA PSPPH_3980 Ribosomal small subunit pseudouridine synthase Achromosome CDS4545916 693 + 0.582973
rumA PSPPH_3717 23S rRNA (uracil-5-)-methyltransferase RumAchromosome CDS4264108 1356 - 0.612094
serS PSPPH_3089 seryl-tRNA synthetasechromosome CDS3585024 1281 - 0.602654
sfhB PSPPH_0740 Ribosomal large subunit pseudouridine synthase D(Pseudouridine synthase) (Uracil hydrolyase)chromosome CDS866157 963 + 0.610592
srmB PSPPH_1462 ATP-dependent RNA helicase SrmBchromosome CDS1705008 1338 + 0.606129
sun PSPPH_0019 sun proteinchromosome CDS24169 1347 - 0.642168
tgt PSPPH_1300 queuine tRNA-ribosyltransferasechromosome CDS1511830 1134 + 0.590829
thrS PSPPH_2135 threonyl-tRNA synthetasechromosome CDS2491162 1923 + 0.568903
trmA PSPPH_4345 tRNA (uracil-5-)-methyltransferasechromosome CDS4967254 1086 + 0.623389
trmD PSPPH_1356 tRNA (guanine-N1)-methyltransferasechromosome CDS1572495 753 + 0.564409
trmU PSPPH_3102 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3600107 1131 + 0.586207
trpS PSPPH_4129 tryptophanyl-tRNA synthetasechromosome CDS4714721 1350 - 0.598518
truA PSPPH_1656 tRNA pseudouridine synthase Achromosome CDS1918575 825 + 0.589091
truB PSPPH_4187 tRNA pseudouridine synthase Bchromosome CDS4774569 918 - 0.583878
tsf PSPPH_3839 translation elongation factor Tschromosome CDS4393890 864 - 0.550926
tuf PSPPH_4594 translation elongation factor Tuchromosome CDS5227602 1194 - 0.550251
tyrS PSPPH_0688 tyrosyl-tRNA synthetasechromosome CDS802283 1212 + 0.552805
valS PSPPH_1153 valyl-tRNA synthetasechromosome CDS1352753 2847 - 0.610818
ychF PSPPH_0988 GTP-binding protein YchFchromosome CDS1182547 1101 - 0.582198
yfiA PSPPH_4152 ribosomal subunit interface proteinchromosome CDS4736613 309 + 0.498382