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2024-05-17 10:04:32

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 187

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Bdellovibrio bacteriovorus, HD100 = DSM 50701 = ATCC 15356 = ICPB 3268 NCIB 9529
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Bd3187 hypothetical protein predicted by Glimmer/Criticachromosome CDS3108329 480 - 0.4875
NA Bd3112 probable 30S ribosomal protein S4chromosome CDS3019196 627 - 0.494418
NA Bd2086 conserved hypothetical proteinchromosome CDS1997469 1362 - 0.502937
NA Bd3078 putative 2'-5' RNA ligasechromosome CDS2988311 630 + 0.512698
NA Bd1548 chromosome CDS1474785 405 + 0.488889
NA Bd2359 hypothetical protein predicted by Glimmer/Criticachromosome CDS2260094 921 - 0.48317
NA Bd1681 putative formyltransferasechromosome CDS1618384 888 + 0.432432
NA Bd1920 hypothetical protein predicted by Glimmer/Criticachromosome CDS1832905 294 + 0.489796
NA Bd0153 mannose-1-phosphate guanyltransferasechromosome CDS138002 990 - 0.518182
NA Bd1314 Dihydrouridine synthase family proteinchromosome CDS1242301 972 - 0.531893
NA Bd1370 RNA helicasechromosome CDS1294194 1383 + 0.53073
NA Bd2974 probable 50S ribosomal protein L23chromosome CDS2871789 279 - 0.412186
NA Bd0637 dimethyladenosine transferasechromosome CDS593573 825 + 0.512727
NA Bd1940 Fe-S oxidoreductasechromosome CDS1852919 1332 + 0.521772
NA Bd2617 transcription regulatorchromosome CDS2534851 324 + 0.506173
NA Bd2036 predicted exonuclease of the beta-lactamase familychromosome CDS1945454 1359 + 0.470935
NA Bd3423 hypothetical protein predicted by Glimmer/Criticachromosome CDS3335269 447 + 0.47651
NA Bd3604 hypothetical protein predicted by Glimmer/Criticachromosome CDS3498998 1209 - 0.490488
NA Bd2708 putative amidasechromosome CDS2628973 1470 + 0.528571
NA Bd1019 conserved hypothetical proteinchromosome CDS967408 891 + 0.549944
NA Bd0136 transcription regulator homolog yacFchromosome CDS120739 1014 + 0.509862
NA Bd0344 putative translation factor related to Sua5chromosome CDS326676 1017 + 0.53589
NA Bd0702 lysyl-tRNA synthetasechromosome CDS653220 1218 + 0.495895
NA Bd1619 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS1550437 438 + 0.511416
NA Bd1599 hypothetical protein predicted by Glimmer/Criticachromosome CDS1529473 759 + 0.488801
NA Bd0236 Cytosine deaminasechromosome CDS222472 942 - 0.541401
NA Bd1323 Pseudouridine synthase Rlu family proteinchromosome CDS1251463 687 - 0.515284
NA Bd2358 putative RNA pseudouridylate synthasechromosome CDS2259246 852 + 0.501174
NA Bd3150 hypothetical protein predicted by Glimmer/Criticachromosome CDS3063999 741 + 0.500675
NA Bd0940 30S ribosomal protein S18chromosome CDS889949 270 - 0.425926
NA Bd3270 methylase for 50S ribosomal subunit protein L11chromosome CDS3192179 900 + 0.507778
NA Bd2164 peptidyl-tRNA hydrolasechromosome CDS2066848 402 - 0.507463
NA Bd3442 hypothetical proteinchromosome CDS3353836 1962 - 0.554026
NA Bd2918 hypothetical protein predicted by Glimmer/Criticachromosome CDS2828588 672 - 0.482143
NA Bd1467 30S ribosomal protein S20chromosome CDS1386752 264 - 0.412879
NA Bd1383 Pseudouridine synthase Rlu family proteinchromosome CDS1310125 720 - 0.505556
NA Bd1519 Pseudouridine synthase Rlu family proteinchromosome CDS1443078 873 - 0.548683
NA Bd1820 poly A polymerasechromosome CDS1747288 1194 + 0.546064
NA Bd3841 conserved hypothetical proteinchromosome CDS3706838 1374 - 0.502911
NA Bd0200 hemolysinchromosome CDS185956 777 + 0.485199
NA Bd0192 hypothetical protein predicted by Glimmer/Criticachromosome CDS177923 558 - 0.528674
NA Bd1164 putative ribosomal protein N-acetyltransferasechromosome CDS1106881 555 + 0.486486
NA Bd1448 hypothetical proteinchromosome CDS1362137 2832 - 0.514477
NA Bd1624 50S ribosomal protein L35chromosome CDS1562333 192 + 0.427083
NA Bd2995 RNA methyltransferase, TrmH family, groupchromosome CDS2892207 894 - 0.527964
NA Bd2754 hypothetical protein predicted by Glimmer/Criticachromosome CDS2675033 522 - 0.480843
NA Bd0365 leucyl-rRNA synthetasechromosome CDS341827 2391 - 0.519866
NA Bd0882 hypothetical protein predicted by Glimmer/Criticachromosome CDS832770 309 + 0.550162
NA Bd0275 putative lipoproteinchromosome CDS262330 444 + 0.497748
NA Bd3264 putative pseudouridylate synthasechromosome CDS3179884 798 + 0.493734
NA Bd3721 hypothetical protein predicted by Glimmer/Criticachromosome CDS3597061 855 - 0.533333
NA Bd2558 ribosomal-protein-alanine acetyltransferasechromosome CDS2470287 567 + 0.507937
NA Bd2547 hypothetical protein predicted by Glimmer/Criticachromosome CDS2457329 1407 + 0.508173
NA Bd3538 RNA methyltransferase, TrmH family, group 1chromosome CDS3441751 786 + 0.538168
NA Bd1632 23S rRNA methyltransferasechromosome CDS1568910 756 - 0.501323
NA Bd3614 conserved hypothetical proteinchromosome CDS3510300 828 - 0.545894
NA Bd0085 cytidine/deoxycytidylate deaminase family proteinchromosome CDS80485 468 + 0.487179
NA Bd1865 hypothetical protein predicted by Glimmer/Criticachromosome CDS1789731 1059 - 0.508026
NA Bd2957 hypothetical protein predicted by Glimmer/Criticachromosome CDS2865542 195 - 0.389744
IleRS Bd2257 isoleucyl-tRNA synthetase (IleRS)chromosome CDS2153290 3171 - 0.500788
PSrp-1 Bd0848 Ribosome-associated protein Ychromosome CDS794773 351 + 0.470085
alaS Bd0501 chromosome CDS468453 2724 - 0.523495
argS Bd2027 chromosome CDS1935446 1743 + 0.491107
asnS Bd1054 asparaginyl-tRNA synthetasechromosome CDS999387 1545 - 0.505502
aspG Bd3633 asparaginasechromosome CDS3528364 519 + 0.481696
aspS Bd3311 chromosome CDS3228340 1929 - 0.521514
cafA Bd3851 ribonuclease Gchromosome CDS3715711 1518 - 0.503294
cspR Bd0271 rRNA methyltransferasechromosome CDS257544 483 + 0.530021
cysS Bd2317 chromosome CDS2213438 1449 - 0.517598
dbpA Bd1394 ATP-dependent RNA helicasechromosome CDS1321014 1518 - 0.532279
deaD Bd1412 ATP-dependent RNA helicasechromosome CDS1333210 1971 - 0.541857
def Bd2759 polypeptide deformylasechromosome CDS2677761 606 - 0.485149
efp Bd2491 translation elongation factor EF-Pchromosome CDS2393777 567 + 0.462081
fmt Bd2757 chromosome CDS2676808 957 - 0.537095
ftsJ Bd1423 cell division protein FtsJchromosome CDS1344434 591 + 0.497462
fusA Bd2979 elongation factor EF-Gchromosome CDS2873895 2106 - 0.493352
fusA-2 Bd0987 elongation factor EF-Gchromosome CDS930333 2109 - 0.471788
gatA Bd0059 glutamyl-tRNA(Gln) amidotransferase, A subunitchromosome CDS52978 1473 + 0.53021
gatB Bd0060 glutamyl-tRNA(Gln) amidotransferase, B subunitchromosome CDS54440 1434 + 0.502092
gatC Bd0058 glutamyl-tRNA(Gln) amidotransferase (subunit C)chromosome CDS52687 282 + 0.503546
gid Bd3419 glucose-inhibited division proteinchromosome CDS3330991 1323 + 0.51096
glnS Bd1371 glutaminyl-tRNA synthetasechromosome CDS1295672 1695 + 0.507375
gltX Bd2319 glutamyl-tRNA synthetasechromosome CDS2214899 1473 - 0.507807
glyS Bd1147 glycyl-tRNA synthetasechromosome CDS1087485 1341 + 0.486204
hemK Bd0070 HemK proteinchromosome CDS63609 882 + 0.501134
hisS Bd1107 chromosome CDS1042470 1383 - 0.485177
infA Bd0321 translation initiation factor IF-1chromosome CDS306046 222 + 0.463964
infA Bd0953 translation initiation factor IF-1chromosome CDS898867 219 + 0.429224
infB Bd1547 translation initiation factor IF-2chromosome CDS1471858 2928 + 0.537227
infC Bd1618 translation initiation factor IF-3chromosome CDS1549747 537 + 0.484171
iucB Bd1575 Aerobactin siderophore biosynthesis protein iucBchromosome CDS1504402 981 - 0.51682
leuS Bd0767 leucyl-rRNA synthetasechromosome CDS725640 1635 + 0.521713
lysS Bd2338 lysyl-tRNA synthetasechromosome CDS2236316 1515 - 0.49835
map Bd0649 chromosome CDS602754 759 - 0.529644
map Bd1338 chromosome CDS1264924 765 + 0.479739
miaA Bd1565 chromosome CDS1491638 927 + 0.531823
nifR Bd1309 Nitrogen regulation protein nifR3chromosome CDS1236884 1059 + 0.557129
pcnB Bd3464 poly(A) polymerasechromosome CDS3373224 1230 + 0.509756
pheS Bd1637 phenylalanyl-tRNA synthetase, alpha subunitchromosome CDS1572189 1026 + 0.5
pnp Bd1551 polyribonucleotide nucleotidyltransferasechromosome CDS1476606 2094 + 0.497135
prfA Bd0069 peptide chain release factor RF-1chromosome CDS62532 1074 + 0.506518
prfB Bd1489 chromosome CDS1409428 966 + 0.503106
prfC Bd2130 chromosome CDS2034206 1608 - 0.499378
proS Bd3033 chromosome CDS2944961 1500 - 0.514667
pth Bd2706 chromosome CDS2627222 564 + 0.514184
queA Bd2237 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS2135725 1041 - 0.523535
rhbD Bd0508 siderophore biosynthesis proteinchromosome CDS477710 636 + 0.518868
rhlB Bd3461 ATP-dependent RNA helicasechromosome CDS3370568 1650 - 0.526667
rhlE Bd0235 ATP-dependent RNA helicasechromosome CDS220904 1518 - 0.529644
rhlE Bd0316 ATP-dependent RNA helicasechromosome CDS302718 1422 + 0.538678
rhlE Bd0324 putative ATP-dependent RNA helicasechromosome CDS308387 1239 + 0.488297
rimL Bd2395 ribosomal-protein-serine acetyltransferasechromosome CDS2301168 1242 + 0.421095
rimM Bd2120 putative 16S rRNA processing proteinchromosome CDS2028271 534 - 0.449438
rluA Bd2820 Pseudouridylate synthase, 23S RNA-specificchromosome CDS2726873 693 + 0.49062
rluA Bd1424 putative pseudouridine synthasechromosome CDS1345021 678 + 0.519174
rluC Bd1793 ribosomal large subunit pseudouridine synthase Cchromosome CDS1720475 696 - 0.527299
rluD Bd3791 Pseudouridylate synthasechromosome CDS3663671 960 + 0.522917
rnpA Bd3913 ribonuclease P protein componentchromosome CDS3782269 360 - 0.436111
rph Bd2700 ribonuclease PHchromosome CDS2621909 732 + 0.519126
rpl32 Bd2015 50S ribosomal protein L32chromosome CDS1926851 186 - 0.510753
rplA Bd2990 50S ribosomal protein L1chromosome CDS2888031 705 - 0.468085
rplB Bd2973 50S ribosomal protein L2chromosome CDS2870968 819 - 0.457875
rplC Bd2976 50S ribosomal protein L3chromosome CDS2872698 663 - 0.46003
rplD Bd2975 50S ribosomal protein L4chromosome CDS2872067 630 - 0.438095
rplE Bd2964 50S ribosomal protein L5chromosome CDS2867861 540 - 0.440741
rplF Bd2962 50S ribosomal protein L6chromosome CDS2866595 543 - 0.460405
rplI Bd0034 50S ribosomal protein L9chromosome CDS30732 444 + 0.434685
rplJ Bd2989 50S ribosomal protein L10chromosome CDS2887265 549 - 0.455373
rplK Bd2991 50S ribosomal protein L11chromosome CDS2888748 438 - 0.461187
rplL Bd2987 50S ribosomal protein L7/L12chromosome CDS2886814 369 - 0.447154
rplM Bd0492 50S ribosomal protein L13chromosome CDS460244 441 + 0.430839
rplN Bd2965 50S ribosomal protein L14chromosome CDS2868411 369 - 0.425474
rplO Bd2956 50S ribosomal protein L15chromosome CDS2865102 438 - 0.47032
rplP Bd2969 50S ribosomal protein L16chromosome CDS2869264 408 - 0.473039
rplQ Bd2949 50S ribosomal protein L17chromosome CDS2859721 546 - 0.43956
rplR Bd2960 50S ribosomal protein L18chromosome CDS2866217 366 - 0.437158
rplS Bd2117 50S ribosomal protein L19chromosome CDS2026452 372 - 0.424731
rplT Bd1625 50S ribosomal chain protein L20chromosome CDS1562592 348 + 0.456897
rplU Bd3849 50S ribosomal protein L21chromosome CDS3713261 615 - 0.409756
rplV Bd2971 50S ribosomal protein L22chromosome CDS2870326 333 - 0.435435
rplX Bd0941 50S ribosomal protein L24chromosome CDS890715 261 + 0.402299
rplY Bd2705 50S ribosomal protein L25chromosome CDS2626372 639 + 0.475743
rpmA Bd3848 50S ribosomal protein L27chromosome CDS3712971 261 - 0.421456
rpmC Bd2968 50S ribosomal protein L29chromosome CDS2869068 192 - 0.421875
rpmE Bd0068 50S ribosomal protein L31chromosome CDS62139 246 + 0.386179
rpsA Bd1066 30S ribosomal protein S1chromosome CDS1011942 1788 + 0.439597
rpsA Bd1198 30S ribosomal protein S1chromosome CDS1138486 1197 + 0.490393
rpsB Bd3780 30S ribosomal protein S2chromosome CDS3654740 942 + 0.464968
rpsC Bd2970 30S ribosomal protein S3chromosome CDS2869658 666 - 0.456456
rpsD Bd2951 30S ribosomal protein S4chromosome CDS2861474 627 - 0.435407
rpsE Bd2958 30S ribosomal protein S5chromosome CDS2865748 459 - 0.466231
rpsF Bd0032 30S ribosomal protein S6chromosome CDS29347 459 + 0.429194
rpsG Bd2980 30S ribosomal protein S7chromosome CDS2876010 474 - 0.43038
rpsH Bd2963 30S ribosomal protein S8chromosome CDS2867145 390 - 0.44359
rpsI Bd0493 30S ribosomal subunit protein S9chromosome CDS460698 399 + 0.448622
rpsJ Bd2978 30S ribosomal protein S10chromosome CDS2873370 318 - 0.433962
rpsK Bd2952 30S ribosomal protein S11chromosome CDS2862111 393 - 0.473282
rpsL Bd2981 30S ribosomal protein S12chromosome CDS2876494 375 - 0.464
rpsM Bd2953 30S ribosomal protein S13chromosome CDS2862518 375 - 0.464
rpsO Bd1550 30S ribosomal protein S15chromosome CDS1476236 270 + 0.392593
rpsP Bd2122 30S ribosomal protein S16chromosome CDS2029202 249 - 0.413655
rpsQ Bd2967 30S ribosomal protein S17chromosome CDS2868789 270 - 0.42963
rpsS Bd2972 30S ribosomal protein S19chromosome CDS2870671 288 - 0.423611
rpsU Bd0239 Ribosomal protein S21chromosome CDS225373 201 + 0.383085
rrf Bd3784 chromosome CDS3657458 561 + 0.458111
rsuA2 Bd1967 pseudouridylate synthasechromosome CDS1879496 738 - 0.509485
serS Bd0077 chromosome CDS71677 1296 + 0.501543
spoU Bd1203 putative RNA methylasechromosome CDS1142753 717 + 0.514644
sun Bd1101 putative sun proteinchromosome CDS1036785 1188 + 0.521886
tdcF Bd1766 putative translation initiation inhibitorchromosome CDS1700549 378 + 0.478836
tgt Bd2236 queuine tRNA-ribosyltransferasechromosome CDS2134566 1152 - 0.513889
thrS Bd1807 chromosome CDS1735588 1251 + 0.528377
thrS Bd1617 chromosome CDS1547566 1971 + 0.483511
trmD Bd2119 tRNA methyltransferasechromosome CDS2027451 828 - 0.5157
trmH Bd1732 putative tRNA/rRNA methyltransferasechromosome CDS1666967 777 - 0.483912
trmU Bd1939 tRNA-methyltransferasechromosome CDS1851867 1056 + 0.501894
trpS Bd0507 Tryptophan--tRNA ligasechromosome CDS476318 996 - 0.514056
truA Bd0491 pseudouridylate synthase Ichromosome CDS459344 789 + 0.509506
truB Bd1549 tRNA pseudouridine synthase Bchromosome CDS1475179 927 + 0.548004
tsf Bd3782 elongation factor EF-Tschromosome CDS3655803 927 + 0.457389
tuf Bd2994 translation elongation factor Tuchromosome CDS2890460 1191 - 0.447523
tyrS Bd1189 chromosome CDS1129648 1218 + 0.509031
valS Bd0458 chromosome CDS428475 2685 - 0.514339
ychF Bd2707 GTP-binding proteinchromosome CDS2627821 1101 + 0.500454
yciH Bd0232 putative translation initiation factor SUI1chromosome CDS218881 363 + 0.471074
ygcA Bd3828 hypothetical RNA methyltransferasechromosome CDS3695501 1182 + 0.539763
ygcA Bd2056 hypothetical RNA methyltransferasechromosome CDS1962854 1167 + 0.529563