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2024-05-21 06:56:48

Gene list

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COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome

Number of genes found: 181

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Pirellula sp., 1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RB12419 cytosine deaminasechromosome CDS6680453 480 + 0.579167
NA RB4423 probable cytidine and deoxycytidylate deaminase family proteinchromosome CDS2274588 498 - 0.556225
NA RB2096 hypothetical proteinchromosome CDS1105484 984 - 0.547764
NA RB4043 probable glucose-1-phosphate thymidylyltransferasechromosome CDS2089389 1356 - 0.545723
NA RB3100 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS1606474 627 + 0.545455
NA RB12129 threonyl-tRNA synthetasechromosome CDS6545870 2493 + 0.565584
NA RB12047 putative ATP-dependent RNA helicase rhlEchromosome CDS6497993 1458 + 0.579561
NA RB4174 tRNA (ms[2]io[6]A)-hydroxylasechromosome CDS2146060 582 + 0.539519
NA RB8580 probable sigma-54 modulation proteinchromosome CDS4577393 342 + 0.535088
NA RB5133 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS2638064 1191 + 0.533165
NA RB12718 conserved hypothetical protein-putative tRNA adenylyltransferasechromosome CDS6849432 1146 + 0.507853
NA RB6728 hypothetical proteinchromosome CDS3570581 342 + 0.564327
NA RB1977 conserved hypothetical protein-putative cleavage and polyadenylation specifity factor proteinchromosome CDS1039488 1158 + 0.568221
NA RB794 hypothetical proteinchromosome CDS424501 462 + 0.58658
NA RB2543 30S ribosomal protein S1chromosome CDS1326685 2076 + 0.558767
NA RB5186 probable GTP-binding proteinchromosome CDS2669970 1167 - 0.546701
NA RB11342 hypothetical proteinchromosome CDS6154311 345 - 0.536232
NA RB6888 hypothetical proteinchromosome CDS3661187 1263 - 0.530483
NA RB12524 conserved hypothetical protein-putative peptide chain release factorchromosome CDS6746493 633 + 0.565561
NA RB13128 hypothetical proteinchromosome CDS7041425 516 + 0.556202
NA RB9805 similar to circumsporozoite protein-putative membrane associated proteinchromosome CDS5276839 3681 + 0.566694
NA RB9083 conserved hypothetical protein-putative 2'-5' RNA ligasechromosome CDS4851788 570 + 0.54386
NA RB11894 conserved hypothetical proteinchromosome CDS6405719 1386 - 0.624098
NA RB11701 probable tetratricopeptide repeat family proteinchromosome CDS6308278 2706 + 0.552106
NA RB5456 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS2826426 558 - 0.508961
NA RB2056 hypothetical protein-transmembrane predictionchromosome CDS1082219 597 + 0.574539
NA RB1263 conserved hypothetical protein-putative NifR3 family proteinchromosome CDS647136 1125 + 0.586667
NA RB2272 hypothetical protein-transmembrane predictionchromosome CDS1192508 582 - 0.57732
NA RB4877 lysine--tRNA ligase genXchromosome CDS2506310 1185 + 0.562025
NA RB8824 cytosine deaminasechromosome CDS4691280 564 + 0.539007
NA RB11052 conserved hypothetical proteinchromosome CDS5991855 276 - 0.550725
NA RB13261 glutamyl-tRNA synthetase-related proteinchromosome CDS7109512 990 - 0.584848
NA RB4015 hypothetical protein-signal peptide predictionchromosome CDS2075604 711 - 0.523207
NA RB12961 hypothetical protein-signal peptide predictionchromosome CDS6974274 669 - 0.562033
NA RB8680 cleavage and polyadenylation specifity factor-related proteinchromosome CDS4620010 1467 - 0.562372
NA RB9513 probable mu-protocadherin-putative cell-suface proteinchromosome CDS5109960 1926 + 0.581516
NA RB6430 hypothetical proteinchromosome CDS3383157 888 + 0.574324
NA RB8239 hypothetical proteinchromosome CDS4404615 708 + 0.59887
NA RB10134 50S ribosomal protein L21chromosome CDS5468929 315 - 0.52381
NA RB8522 putative rRNA methylasechromosome CDS4546213 909 + 0.558856
NA RB1270 putative translation initiation inhibitorchromosome CDS649173 465 + 0.563441
NA RB5756 hypothetical protein-transmembrane predictionchromosome CDS3009494 3990 + 0.546366
NA RB12281 hypothetical proteinchromosome CDS6606519 1221 - 0.538903
NA RB11219 RNA 2-phosphotransferasechromosome CDS6083086 555 - 0.526126
NA RB12945 conserved hypothetical protein-putative protein chain release factor Bchromosome CDS6969132 429 + 0.543124
NA RB3930 hypothetical proteinchromosome CDS2034253 165 - 0.509091
NA RB98 similar to 50S ribosomal protein L37aechromosome CDS40275 297 - 0.542088
NA RB8001 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS4276849 693 - 0.55267
NA RB2355 conserved hypothetical protein-putative acetyltransferasechromosome CDS1221808 513 - 0.520468
NA RB921 hypothetical proteinchromosome CDS488758 369 + 0.577236
NA RB12138 conserved hypothetical proteinchromosome CDS6550672 1287 + 0.574981
NA RB969 hypothetical protein-signal peptide and transmembrane predictionchromosome CDS507238 708 + 0.59322
NA RB2090 conserved hypothetical proteinchromosome CDS1101973 336 + 0.526786
NA RB6670 putative translation factorchromosome CDS3548700 1119 + 0.588919
NA RB537 hypothetical proteinchromosome CDS296227 231 + 0.61039
NA RB10683 conserved hypothetical protein-putative protein belonging to the NifR3 familychromosome CDS5806079 1095 + 0.592694
NA RB12839 50S ribosomal protein L1chromosome CDS6921934 678 + 0.541298
NA RB4320 hypothetical proteinchromosome CDS2226114 498 + 0.544177
NA RB11674 hypothetical proteinchromosome CDS6299390 720 + 0.556944
NA RB10880 conserved hypothetical protein-putative 2-methylthioadenine synthetasechromosome CDS5905907 1434 - 0.55788
NA RB11982 hypothetical proteinchromosome CDS6460440 144 + 0.472222
NA RB2931 conserved hypothetical protein-putative acetyltransferasechromosome CDS1517535 603 - 0.547264
FRR RB3886 Ribosome recycling factorchromosome CDS2008765 603 + 0.527363
alaS RB8543 alanyl-tRNA synthetasechromosome CDS4557105 2838 - 0.564834
argS RB5747 arginyl-tRNA synthetasechromosome CDS3001359 2016 - 0.514881
asnS RB13263 asparaginyl-tRNA synthetasechromosome CDS7110498 1473 - 0.564834
aspS RB8253 Aspartyl-tRNA synthetasechromosome CDS4410353 1779 + 0.572794
cycX RB9012 probable cytochrome c biogenesis protein CycX homologchromosome CDS4801715 3252 + 0.543973
cysS RB4675 cysteinyl-tRNA synthetasechromosome CDS2388565 1887 - 0.568098
deaD RB8189 ATP-dependent RNA helicasechromosome CDS4379339 2796 - 0.551144
deaD RB7317 ATP-dependent RNA helicasechromosome CDS3893519 1359 + 0.576895
def RB12856 peptide deformylasechromosome CDS6927987 606 - 0.562706
dtd RB8300 D-tyrosyl-tRNA(Tyr) deacylasechromosome CDS4434814 546 + 0.549451
eIF-2B RB10264 putative translation initiation factor eIF-2Bchromosome CDS5546370 1071 - 0.588235
efp RB1213 elongation factor Pchromosome CDS618945 588 - 0.52551
efp RB12577 translation elongation factor EF-Pchromosome CDS6779119 768 + 0.53776
fmt RB12854 methionyl-tRNA formyltransferasechromosome CDS6927002 1008 - 0.610119
fusA RB5434 elongation factor G (EF-G)chromosome CDS2815776 2088 - 0.53113
fusA RB7821 elongation factor Gchromosome CDS4186706 2175 + 0.6
gatA RB4143 Glutamyl-tRNA(Gln) amidotransferase subunit Achromosome CDS2130113 1500 + 0.601333
gatB RB10852 glutamyl-tRNA(Gln) amidotransferase subunit Bchromosome CDS5891768 1494 - 0.577644
gatC RB8359 glutamyl-tRNA (Gln) amidotransferase subunit Cchromosome CDS4460178 276 + 0.583333
glnS RB1578 glutaminyl-tRNA synthetasechromosome CDS808911 1806 + 0.540975
gltX RB7600 glutamyl-tRNA synthetasechromosome CDS4086470 1638 - 0.562271
glyS RB10547 glycyl-tRNA synthetasechromosome CDS5719900 1677 + 0.550984
hemK RB9306 hemK proteinchromosome CDS4975706 891 + 0.582492
hisS RB251 histidyl-tRNA synthetasechromosome CDS128316 1329 - 0.573363
htrA RB299 probable serine protease HtrAchromosome CDS149063 1269 + 0.549251
ileS RB7259 probable isoleucyl-tRNA synthetasechromosome CDS3855873 3642 + 0.555739
infA RB10468 probable translation initiation factor IF-1chromosome CDS5677614 222 - 0.518018
infB RB5504 translation initiation factor IF-2chromosome CDS2847721 3117 - 0.566891
infC RB12197 translation initiation factor IF-3chromosome CDS6577129 531 - 0.532957
kptA RB384 probable RNA 2-phosphotransferasechromosome CDS198704 297 - 0.572391
ksgA RB12377 dimethyladenosine transferasechromosome CDS6661109 855 - 0.556725
lueS RB8919 putative leucyl-tRNA synthetasechromosome CDS4747666 2853 + 0.572029
lysS RB10883 lysyl-tRNA synthetasechromosome CDS5907588 1641 + 0.562462
map RB3478 Methionine aminopeptidasechromosome CDS1797074 798 - 0.565163
miaA RB1507 tRNA delta(2)-isopentenylpyrophosphate transferasechromosome CDS771198 1005 - 0.573134
miaB RB9401 probable MiaB protein-putative tRNA-thiotransferasechromosome CDS5041673 1440 + 0.561806
papS RB1993 poly A polymerasechromosome CDS1049204 1284 - 0.573209
pheS RB7114 phenylalanyl-tRNA synthetase alpha chainchromosome CDS3778209 1044 - 0.570881
pheT RB7112 phenylalanyl-tRNA synthetase beta chainchromosome CDS3775972 2046 - 0.569404
pnp RB5804 polyribonucleotide nucleotidyltransferasechromosome CDS3040160 2457 + 0.567766
prfA RB9305 peptide chain release factor 1chromosome CDS4974620 1083 + 0.562327
prfB RB6552 peptide chain release factor 2 (RF-2)chromosome CDS3478346 1014 - 0.563116
proS RB5178 prolyl tRNA synthetasechromosome CDS2665962 1521 - 0.551611
pth RB9922 peptidyl-tRNA hydrolasechromosome CDS5344869 573 - 0.530541
queA RB5191 S-adenosylmethionine:tRNAribosyltransferase-isom erasechromosome CDS2672933 1209 + 0.559967
rbfA RB5503 probable ribosome-binding factor Achromosome CDS2847155 414 - 0.565217
rimK RB7299 ribosomal protein S6 modification proteinchromosome CDS3878200 1218 + 0.553366
rimK RB6756 probable ribosomal protein S6 modification proteinchromosome CDS3592032 1044 - 0.570881
rluA RB2141 ribosomal large subunit pseudouridine synthase Achromosome CDS1131677 699 - 0.570815
rluD RB6482 ribosomal large subunit pseudouridine synthase Dchromosome CDS3427166 771 - 0.54345
rluD RB3266 ribosomal large subunit pseudouridine synthase Dchromosome CDS1679865 966 - 0.55383
rluD RB12885 ribosomal large subunit pseudouridine synthasechromosome CDS6941550 1005 + 0.562189
rnd RB5689 ribonuclease Dchromosome CDS2967715 1482 + 0.557355
rne RB8595 ribonuclease Echromosome CDS4581760 1605 + 0.535826
rnpA RB7431 probable ribonuclease P protein componentchromosome CDS3985327 441 + 0.555556
rph RB5725 ribonuclease PHchromosome CDS2987529 741 + 0.574899
rplB RB7837 50S ribosomal protein L2chromosome CDS4194481 861 + 0.577236
rplC RB7833 50S ribosomal protein L3chromosome CDS4192692 687 + 0.56623
rplD RB7834 50S ribosomal protein L4chromosome CDS4193390 669 + 0.563528
rplE RB7852 50S ribosomal protein L5chromosome CDS4198935 591 + 0.524535
rplF RB7856 50S ribosomal protein L6chromosome CDS4200306 546 + 0.538462
rplI RB9916 ribosomal protein L9chromosome CDS5343249 534 - 0.546816
rplJ RB12840 probable 50S ribosomal protein L10chromosome CDS6922785 525 + 0.539048
rplK RB7899 50S ribosomal protein L11chromosome CDS4220226 426 + 0.546948
rplL RB12842 probable 50S ribosomal protein L7/L12chromosome CDS6923401 423 + 0.553191
rplM RB10471 50S ribosomal protein L13chromosome CDS5678304 456 - 0.541667
rplN RB7850 50S ribosomal protein L14chromosome CDS4198081 369 + 0.566396
rplO RB7863 50S ribosomal protein L15chromosome CDS4202048 495 + 0.563636
rplP RB7841 50S ribosomal protein L16chromosome CDS4196810 417 + 0.539568
rplQ RB12628 probable 50S ribosomal protein L17chromosome CDS6798878 633 + 0.559242
rplR RB7857 50S ribosomal protein L18chromosome CDS4200854 450 + 0.557778
rplS RB12821 50S ribosomal protein L19chromosome CDS6916205 354 - 0.556497
rplT RB7115 probable 50S ribosomal protein L20chromosome CDS3779262 357 - 0.557423
rplV RB7839 50S ribosomal protein L22chromosome CDS4195706 360 + 0.533333
rplW RB7836 50S ribosomal protein L23chromosome CDS4194060 324 + 0.518519
rplX RB7851 probable 50S ribosomal protein L24chromosome CDS4198529 348 + 0.54023
rplY RB9923 probable 50S ribosomal protein L25chromosome CDS5345438 639 - 0.574335
rpmA RB6770 50S ribosomal protein L27chromosome CDS3599617 246 - 0.560976
rpmC RB7846 probable 50S ribosomal protein L29chromosome CDS4197405 219 + 0.484018
rpmE RB9304 50S ribosomal protein L31chromosome CDS4974378 246 + 0.520325
rpmG RB8725 similar to 50S ribosomal protein L33chromosome CDS4638301 165 + 0.466667
rpmI RB7117 similar to 50S ribosomal protein L35chromosome CDS3779777 546 - 0.558608
rpmJ RB6425 probable ribosomal protein L36chromosome CDS3380727 153 + 0.555556
rpsA RB2024 30S ribosomal protein S1chromosome CDS1067110 1683 - 0.595365
rpsC RB7840 30S ribosomal protein S3chromosome CDS4196161 711 + 0.524613
rpsD RB1233 30S ribosomal protein S4chromosome CDS628870 621 - 0.584541
rpsE RB7859 30S ribosomal protein S5chromosome CDS4201351 534 + 0.546816
rpsF RB9920 probable ribosomal protein S6chromosome CDS5344405 423 - 0.539007
rpsG RB7820 30S ribosomal protein S7chromosome CDS4186170 474 + 0.563291
rpsH RB7855 30S ribosomal protein S8chromosome CDS4199839 402 + 0.549751
rpsI RB10469 30S ribosomal protein S9chromosome CDS5677848 414 - 0.557971
rpsJ RB7829 30S ribosomal protein S10chromosome CDS4192031 327 + 0.568807
rpsK RB12625 30S ribosomal protein S11chromosome CDS6797354 384 + 0.557292
rpsL RB7818 30S ribosomal protein S12chromosome CDS4185730 366 + 0.557377
rpsM RB12623 30S ribosomal protein S13chromosome CDS6796904 384 + 0.565104
rpsN RB7854 30 S ribosomal protein S14chromosome CDS4199624 186 + 0.532258
rpsO RB5801 probable 30S ribosomal protein S15chromosome CDS3039583 270 + 0.518519
rpsP RB12824 probable 30S ribosomal protein S16chromosome CDS6917303 441 - 0.575964
rpsQ RB7849 probable 30S ribosomal protein S17chromosome CDS4197700 327 + 0.553517
rpsR RB8459 30S ribosomal protein S18chromosome CDS4518496 168 + 0.547619
rpsS RB7838 ribosomal protein S19chromosome CDS4195376 270 + 0.525926
rpsT RB7022 probable 30S ribosomal protein S20chromosome CDS3735291 273 + 0.516484
rpsU RB264 similar to 30S ribosomal protein S21chromosome CDS132677 195 + 0.553846
rspB RB10638 ribosomal protein S2chromosome CDS5773139 1191 + 0.560873
serS RB1039 seryl-tRNA synthetasechromosome CDS541472 1329 + 0.570354
spoU RB8060 spoU rRNA methylase family proteinchromosome CDS4314080 846 - 0.583924
spoU RB3942 spoU rRNA Methylase familychromosome CDS2038563 534 - 0.537453
sui1 RB10327 protein translation factor SUI1 homologchromosome CDS5582627 384 + 0.570312
tgt RB1970 queuine tRNA-ribosyltransferasechromosome CDS1035983 1119 + 0.5916
trmD RB12823 tRNA (Guanine-N(1))-methyltransferasechromosome CDS6916578 729 - 0.578875
trmU RB6554 tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferasechromosome CDS3479573 1200 + 0.59
trpS RB6436 tryptophan-tRNA ligasechromosome CDS3389021 963 - 0.549325
truA RB2676 tRNA pseudouridine synthase Achromosome CDS1390759 831 - 0.576414
truB RB6411 tRNA pseudouridine synthase Bchromosome CDS3373581 1047 - 0.56256
tsf RB10640 elongation factor Tschromosome CDS5774380 981 + 0.534149
tufA RB7894 translational elongation factor-Tuchromosome CDS4217484 1197 + 0.537176
tyrS RB9134 tyrosyl-tRNA synthetasechromosome CDS4888731 1317 + 0.568717
valS RB1319 valyl-tRNA synthetasechromosome CDS667248 3123 + 0.566763