Gene list
Applied filters:
COG category: Translation, ribosomal structure and biogenesis
Genomic element: chromosome
Number of genes found: 173
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Idiomarina loihiensis L2TR, L2TR | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | IL1036 | Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA | chromosome | CDS | 1112179 | 783 | + | 0.484036 |
NA | IL0585 | Cytosine/adenosine deaminase putative | chromosome | CDS | 625367 | 453 | - | 0.523179 |
NA | IL1348 | Predicted pseudouridylate synthase, Rlu family | chromosome | CDS | 1446413 | 948 | - | 0.466245 |
NA | IL1583 | Uncharacterized conserved protein | chromosome | CDS | 1698043 | 534 | - | 0.490637 |
NA | IL0859 | SmpA /OmlA family lipoprotein | chromosome | CDS | 916663 | 387 | + | 0.426357 |
NA | IL1541 | Predicted exonuclease of the beta-lactamase fold | chromosome | CDS | 1659277 | 1359 | - | 0.46652 |
NA | IL2430 | Predicted rRNA/tRNA methylase, SpoU family | chromosome | CDS | 2603554 | 465 | - | 0.470968 |
NA | IL1928 | Predicted tRNA-dihydrouridine synthase | chromosome | CDS | 2055069 | 999 | - | 0.505506 |
NA | IL0530 | Predicted exonuclease of the beta-lactamase fold | chromosome | CDS | 555862 | 1392 | - | 0.52227 |
NA | IL1491 | ATP-dependent RNA helicase | chromosome | CDS | 1598576 | 1119 | + | 0.503128 |
NA | IL2227 | Nucleoside-diphosphate-sugar pyrophosphorylase | chromosome | CDS | 2380729 | 678 | - | 0.480826 |
NA | IL0650 | Acetyltransferase, GNAT family | chromosome | CDS | 707089 | 513 | + | 0.387914 |
NA | IL0805 | SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 863050 | 1353 | - | 0.505543 |
NA | IL1553 | Peptidyl-tRNA hydrolase | chromosome | CDS | 1669913 | 411 | - | 0.428224 |
NA | IL1743 | RNA pseudouridylate synthase-family protein | chromosome | CDS | 1876870 | 861 | - | 0.520325 |
NA | IL0849 | Predicted pseudouridylate synthase, Rlu family | chromosome | CDS | 907030 | 711 | - | 0.47398 |
NA | IL1227 | Uncharacterized conserved membrane protein | chromosome | CDS | 1320901 | 732 | - | 0.404372 |
NA | IL0932 | Predicted GTPase, probable translation factor | chromosome | CDS | 984815 | 1092 | + | 0.46978 |
NA | IL1942 | RRNA methylase, SpoU family | chromosome | CDS | 2065609 | 747 | - | 0.504685 |
NA | IL0022 | Possible translation factor, Sua5/YciO/YrdC/YwlC family | chromosome | CDS | 24884 | 561 | + | 0.520499 |
NA | IL2394 | Glutathione synthase | chromosome | CDS | 2567944 | 948 | - | 0.466245 |
NA | IL0395 | Sigma-54 modulation protein | chromosome | CDS | 414571 | 288 | - | 0.409722 |
NA | IL0977 | Predicted RNA-binding protein containing KH domain | chromosome | CDS | 1032454 | 297 | + | 0.424242 |
NA | IL2288 | Predicted tRNA-dihydrouridine synthase | chromosome | CDS | 2451233 | 972 | + | 0.495885 |
NA | IL2275 | Truncated class II lysyl-tRNA synthetase | chromosome | CDS | 2439961 | 978 | - | 0.465235 |
NA | IL2042 | rRNA methyltransferase, TrmH family | chromosome | CDS | 2184054 | 723 | - | 0.495159 |
NA | IL2379 | Endoribonuclease L-PSP family protein | chromosome | CDS | 2551098 | 393 | - | 0.493639 |
NA | IL0893 | Modification methylase, HemK family | chromosome | CDS | 951878 | 930 | - | 0.482796 |
NA | IL0934 | Uncharacterized conserved secreted protein | chromosome | CDS | 986367 | 855 | - | 0.494737 |
NA | IL2028 | Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit | chromosome | CDS | 2171260 | 402 | + | 0.465174 |
NA | IL1629 | Predicted LytTr DNA-binding domain | chromosome | CDS | 1742045 | 192 | - | 0.442708 |
NA | IL1746 | Possible translation factor, Sua5/YciO/YrdC/YwlC family | chromosome | CDS | 1879126 | 624 | - | 0.442308 |
NA | IL1564 | Predicted S-adenosylmethionine-dependent methyltransferase | chromosome | CDS | 1677505 | 588 | + | 0.481293 |
NA | IL1495 | Uncharacterized conserved protein | chromosome | CDS | 1602504 | 696 | + | 0.469828 |
NA | IL2068 | Acetyltransferase, GNAT family | chromosome | CDS | 2204375 | 546 | - | 0.457875 |
NA | IL1309 | RNA pseudouridylate synthase-family protein | chromosome | CDS | 1406359 | 576 | + | 0.501736 |
NA | IL2224 | Predicted pseudouridylate synthase, Rlu family | chromosome | CDS | 2378371 | 657 | + | 0.520548 |
NA | IL2160 | RimK-like domain (C-terminal) fused to uncharacterized conserved domain | chromosome | CDS | 2301694 | 1461 | + | 0.451745 |
NA | IL2407 | Acetyltransferase, GNAT family | chromosome | CDS | 2582710 | 447 | - | 0.49217 |
NA | IL2251 | Glutamyl-tRNA synthetase related protein | chromosome | CDS | 2409726 | 852 | + | 0.49061 |
NA | IL1600 | Endoribonuclease L-PSP family protein | chromosome | CDS | 1717909 | 390 | - | 0.448718 |
alaS | IL1738 | Alanyl-tRNA synthetase | chromosome | CDS | 1869991 | 2598 | - | 0.475366 |
ansA | IL1330 | L-asparaginase I | chromosome | CDS | 1431543 | 1014 | + | 0.45858 |
argS | IL2460 | Arginyl-tRNA synthetase | chromosome | CDS | 2632658 | 1743 | - | 0.488812 |
asnS | IL1327 | Asparaginyl-tRNA synthetase | chromosome | CDS | 1427582 | 1401 | + | 0.479657 |
aspS | IL1089 | Aspartyl-tRNA synthetase | chromosome | CDS | 1172870 | 1770 | - | 0.49096 |
cafA | IL0385 | RNase G | chromosome | CDS | 402147 | 1470 | + | 0.472789 |
cca | IL1966 | tRNA nucleotidyltransferase | chromosome | CDS | 2099429 | 1113 | + | 0.496855 |
cysS | IL1033 | Cysteinyl-tRNA synthetase | chromosome | CDS | 1108341 | 1380 | + | 0.484783 |
dbpA | IL1413 | ATP-dependent RNA helicase | chromosome | CDS | 1516437 | 1425 | + | 0.45614 |
deaD | IL1991 | ATP-dependent RNA helicase | chromosome | CDS | 2124009 | 1785 | - | 0.487955 |
def | IL0018 | N-formylmethionyl-tRNA deformylase | chromosome | CDS | 22243 | 525 | - | 0.472381 |
dtd | IL2448 | D-Tyr-tRNAtyr deacylase | chromosome | CDS | 2619719 | 438 | + | 0.495434 |
efp | IL2276 | Translation elongation factor P | chromosome | CDS | 2440945 | 570 | - | 0.450877 |
fmt | IL0017 | Methionyl-tRNA formyltransferase | chromosome | CDS | 21293 | 951 | - | 0.519453 |
frr | IL0842 | Ribosome recycling factor | chromosome | CDS | 899409 | 558 | - | 0.4319 |
ftsJ | IL0976 | 23S rRNA methylase | chromosome | CDS | 1031736 | 627 | - | 0.460925 |
fusA | IL0349 | Translation elongation factor EF-G, GTPase | chromosome | CDS | 363141 | 2124 | + | 0.459981 |
gatA | IL1971 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit | chromosome | CDS | 2103275 | 1557 | + | 0.49711 |
glnS | IL1478 | Glutaminyl-tRNA synthetase | chromosome | CDS | 1586721 | 1686 | - | 0.479241 |
gltX | IL1770 | Glutamyl-tRNA synthetase, catalytic subunit | chromosome | CDS | 1904423 | 1407 | - | 0.487562 |
glyQ | IL0006 | Glycyl-tRNA synthetase, alpha subunit | chromosome | CDS | 8544 | 927 | - | 0.513484 |
glyS | IL0005 | Glycyl-tRNA synthetase, beta subunit | chromosome | CDS | 6465 | 2067 | - | 0.48089 |
gshB | IL2217 | Glutathione synthase | chromosome | CDS | 2370873 | 945 | + | 0.471958 |
hemK | IL0924 | Protoporphyrinogen oxidase | chromosome | CDS | 977608 | 846 | - | 0.491726 |
hisS | IL2033 | Histidyl-tRNA synthetase | chromosome | CDS | 2175866 | 1248 | - | 0.494391 |
ileS | IL1128 | Isoleucyl-tRNA synthetase | chromosome | CDS | 1206761 | 2835 | - | 0.500882 |
infA | IL0673 | Translation initiation factor 1 | chromosome | CDS | 727993 | 219 | + | 0.484018 |
infB | IL0968 | Translation initiation factor 2 | chromosome | CDS | 1021210 | 2691 | - | 0.476774 |
infC | IL1398 | Translation initiation factor 3 | chromosome | CDS | 1500394 | 546 | - | 0.465201 |
ksgA | IL2232 | S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase | chromosome | CDS | 2387110 | 867 | + | 0.472895 |
leuS | IL0947 | Leucyl-tRNA synthetase | chromosome | CDS | 1001006 | 2577 | + | 0.487776 |
lysU | IL0822 | Lysyl-tRNA synthetase class II | chromosome | CDS | 877140 | 1512 | - | 0.482804 |
map | IL0846 | Methionine aminopeptidase | chromosome | CDS | 902744 | 789 | + | 0.455006 |
miaA | IL0332 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 341761 | 951 | + | 0.498423 |
miaB | IL0941 | 2-methylthioadenine synthetase | chromosome | CDS | 995353 | 1440 | + | 0.472917 |
pcnB | IL2252 | Poly(A) polymerase | chromosome | CDS | 2410659 | 1389 | + | 0.49892 |
pheS | IL1395 | Phenylalanyl-tRNA synthetase alpha subunit | chromosome | CDS | 1498652 | 981 | - | 0.475025 |
pnp | IL0964 | Polynucleotide phosphorylase | chromosome | CDS | 1017175 | 2151 | - | 0.456067 |
prfA | IL0925 | Protein chain release factor A | chromosome | CDS | 978450 | 1095 | - | 0.484018 |
prfB | IL0823 | Protein chain release factor B, RF-2 | chromosome | CDS | 878688 | 1056 | - | 0.494318 |
prfC | IL1879 | Peptide chain release factor RF-3 | chromosome | CDS | 2009597 | 1590 | - | 0.472956 |
prmA | IL2287 | Ribosomal protein L11 methylase | chromosome | CDS | 2450227 | 882 | + | 0.517007 |
proS | IL0886 | Prolyl-tRNA synthetase | chromosome | CDS | 946201 | 1704 | + | 0.482981 |
pth | IL0931 | Peptidyl-tRNA hydrolase | chromosome | CDS | 984212 | 597 | + | 0.497487 |
queA | IL2206 | S-adenosylmethionine:tRNA-ribosyltransferase-iso merase | chromosome | CDS | 2357386 | 1056 | - | 0.489583 |
rbfA | IL0967 | Ribosome-binding factor A | chromosome | CDS | 1020805 | 387 | - | 0.452196 |
relE | IL1161 | Cytotoxic translational repressor of toxin-antitoxin stability system | chromosome | CDS | 1240505 | 288 | - | 0.399306 |
rhlB | IL2363 | ATP-dependent RNA helicase | chromosome | CDS | 2533858 | 1278 | + | 0.5 |
rhlE | IL1546 | ATP-dependent RNA helicase | chromosome | CDS | 1664644 | 1251 | + | 0.478018 |
rimK | IL0497 | Ribosomal protein S6 modification enzyme | chromosome | CDS | 522727 | 906 | - | 0.504415 |
rimM | IL1725 | RimM | chromosome | CDS | 1855898 | 525 | - | 0.474286 |
rmf | IL1286 | Ribosome modulation factor | chromosome | CDS | 1383474 | 177 | + | 0.480226 |
rnd | IL1826 | Ribonuclease D | chromosome | CDS | 1958589 | 1173 | - | 0.490196 |
rne | IL1349 | RNase E | chromosome | CDS | 1447822 | 2943 | + | 0.474346 |
rnpA | IL2639 | RNase P protein component | chromosome | CDS | 2838770 | 378 | - | 0.441799 |
rph | IL2425 | RNase PH | chromosome | CDS | 2597204 | 714 | + | 0.498599 |
rplA | IL0342 | Ribosomal protein L1 | chromosome | CDS | 351524 | 696 | + | 0.452586 |
rplB | IL1921 | Ribosomal protein L2 | chromosome | CDS | 2050285 | 825 | - | 0.509091 |
rplC | IL1924 | Ribosomal protein L3 | chromosome | CDS | 2052047 | 639 | - | 0.488263 |
rplD | IL1923 | Ribosomal protein L4 | chromosome | CDS | 2051423 | 606 | - | 0.463696 |
rplE | IL1904 | Ribosomal protein L5 | chromosome | CDS | 2037674 | 540 | - | 0.47963 |
rplF | IL1901 | Ribosomal protein L6P | chromosome | CDS | 2036390 | 534 | - | 0.47191 |
rplI | IL1937 | Ribosomal protein L9 | chromosome | CDS | 2063644 | 453 | - | 0.423841 |
rplJ | IL0343 | Ribosomal protein L10 | chromosome | CDS | 352487 | 519 | + | 0.456647 |
rplK | IL0341 | Ribosomal protein L11 | chromosome | CDS | 351092 | 429 | + | 0.501166 |
rplL | IL0344 | Ribosomal protein L7/L12 | chromosome | CDS | 353060 | 375 | + | 0.474667 |
rplM | IL0414 | Ribosomal protein L13 | chromosome | CDS | 429546 | 429 | + | 0.445221 |
rplN | IL1906 | Ribosomal protein L14 | chromosome | CDS | 2038559 | 369 | - | 0.509485 |
rplO | IL1897 | Ribosomal protein L15 | chromosome | CDS | 2034890 | 435 | - | 0.491954 |
rplP | IL1917 | Ribosomal protein L16 | chromosome | CDS | 2048528 | 414 | - | 0.483092 |
rplQ | IL1890 | Ribosomal protein L17 | chromosome | CDS | 2030434 | 402 | - | 0.480099 |
rplR | IL1900 | Ribosomal protein L18 | chromosome | CDS | 2036027 | 354 | - | 0.502825 |
rplS | IL1723 | Ribosomal protein L19 | chromosome | CDS | 1854748 | 360 | - | 0.463889 |
rplT | IL1396 | Ribosomal protein L20 | chromosome | CDS | 1499756 | 354 | - | 0.457627 |
rplU | IL0475 | Ribosomal protein L21 | chromosome | CDS | 501508 | 312 | + | 0.483974 |
rplV | IL1919 | Ribosomal protein L22 | chromosome | CDS | 2049644 | 333 | - | 0.501502 |
rplW | IL1922 | Ribosomal protein L23 | chromosome | CDS | 2051124 | 303 | - | 0.422442 |
rplX | IL1905 | Ribosomal protein L24 | chromosome | CDS | 2038234 | 315 | - | 0.453968 |
rplY | IL0930 | Ribosomal protein L25 | chromosome | CDS | 983532 | 666 | + | 0.465465 |
rpmA | IL0476 | Ribosomal protein L27 | chromosome | CDS | 501835 | 258 | + | 0.46124 |
rpmB | IL0241 | Ribosomal protein L28 | chromosome | CDS | 257947 | 237 | + | 0.489451 |
rpmC | IL1916 | Ribosomal protein L29 | chromosome | CDS | 2048337 | 192 | - | 0.453125 |
rpmD | IL1898 | Ribosomal protein L30 | chromosome | CDS | 2035328 | 183 | - | 0.486339 |
rpmE | IL2462 | Ribosomal protein L31 | chromosome | CDS | 2636871 | 219 | + | 0.461187 |
rpmF | IL1344 | Ribosomal protein L32 | chromosome | CDS | 1444376 | 171 | - | 0.48538 |
rpmG | IL0242 | Ribosomal protein L33 | chromosome | CDS | 258195 | 156 | + | 0.384615 |
rpmH | IL2640 | Ribosomal protein L34 | chromosome | CDS | 2839140 | 135 | - | 0.481481 |
rpmI | IL1397 | Ribosomal protein L35 | chromosome | CDS | 1500123 | 198 | - | 0.464646 |
rpmJ | IL1895 | Ribosomal protein L36 | chromosome | CDS | 2033418 | 114 | - | 0.421053 |
rpsA | IL1355 | Ribosomal protein S1 | chromosome | CDS | 1453799 | 1683 | - | 0.449792 |
rpsB | IL0845 | Ribosomal protein S2 | chromosome | CDS | 901730 | 729 | - | 0.440329 |
rpsC | IL1918 | Ribosomal protein S3 | chromosome | CDS | 2048953 | 681 | - | 0.484582 |
rpsD | IL1892 | Ribosomal protein S4 | chromosome | CDS | 2031890 | 621 | - | 0.47343 |
rpsE | IL1899 | Ribosomal protein S5 | chromosome | CDS | 2035517 | 501 | - | 0.473054 |
rpsF | IL1940 | Ribosomal protein S6 | chromosome | CDS | 2064700 | 351 | - | 0.475783 |
rpsG | IL0348 | Ribosomal protein S7 | chromosome | CDS | 362642 | 471 | + | 0.473461 |
rpsH | IL1902 | Ribosomal protein S8 | chromosome | CDS | 2036938 | 393 | - | 0.463104 |
rpsI | IL0415 | Ribosomal protein S9 | chromosome | CDS | 429992 | 393 | + | 0.445293 |
rpsJ | IL1925 | Ribosomal protein S10 | chromosome | CDS | 2052724 | 312 | - | 0.490385 |
rpsK | IL1893 | Ribosomal protein S11 | chromosome | CDS | 2032539 | 390 | - | 0.505128 |
rpsL | IL0347 | Ribosomal protein S12 | chromosome | CDS | 362195 | 375 | + | 0.482667 |
rpsM | IL1894 | Ribosomal protein S13 | chromosome | CDS | 2032941 | 357 | - | 0.492997 |
rpsN | IL1903 | Ribosomal protein S14 | chromosome | CDS | 2037357 | 306 | - | 0.486928 |
rpsO | IL0965 | Ribosomal protein S15 | chromosome | CDS | 1019506 | 270 | - | 0.42963 |
rpsP | IL1726 | Ribosomal protein S16 | chromosome | CDS | 1856451 | 249 | - | 0.465863 |
rpsQ | IL1915 | Ribosomal protein S17 | chromosome | CDS | 2048074 | 264 | - | 0.458333 |
rpsR | IL1938 | Ribosomal protein S18 | chromosome | CDS | 2064138 | 228 | - | 0.425439 |
rpsS | IL1920 | Ribosomal protein S19 | chromosome | CDS | 2049990 | 279 | - | 0.46595 |
rpsT | IL1131 | Ribosomal protein S20 | chromosome | CDS | 1212378 | 261 | + | 0.452107 |
rpsU | IL2202 | Ribosomal protein S21 | chromosome | CDS | 2353694 | 216 | - | 0.481481 |
rsmC | IL0493 | 16S RNA G1207 methylase RsmC | chromosome | CDS | 518551 | 1005 | - | 0.480597 |
sUI1 | IL1712 | Possible translation initiation factor, Sui1 family | chromosome | CDS | 1843549 | 336 | + | 0.491071 |
serS | IL0663 | Seryl-tRNA synthetase | chromosome | CDS | 717536 | 1293 | - | 0.4942 |
sfhB | IL1183 | Pseudouridylate synthase | chromosome | CDS | 1272857 | 969 | - | 0.501548 |
smpA | IL0990 | Outer membrane lipoprotein OmlA (small protein A) | chromosome | CDS | 1048356 | 351 | + | 0.413105 |
spoU | IL2375 | rRNA methylase SpoU | chromosome | CDS | 2546114 | 648 | - | 0.479938 |
srmB | IL2131 | ATP-dependent RNA helicase | chromosome | CDS | 2269668 | 1230 | + | 0.495935 |
sun | IL0016 | tRNA and rRNA cytosine-C5-methylase | chromosome | CDS | 19968 | 1329 | - | 0.504138 |
tgt | IL2205 | tRNA-guanine transglycosylase | chromosome | CDS | 2356239 | 1122 | - | 0.495544 |
thrS | IL1399 | Threonyl-tRNA synthetase | chromosome | CDS | 1500959 | 1917 | - | 0.454877 |
tnsC | IL2611 | Transposon Tn7 transposition protein tnsC | chromosome | CDS | 2810401 | 1668 | - | 0.450839 |
trmA | IL2273 | tRNA (uracil-5-)-methyltransferase | chromosome | CDS | 2438429 | 1029 | + | 0.430515 |
trmD | IL1724 | tRNA-(guanine-N1)-methyltransferase | chromosome | CDS | 1855140 | 759 | - | 0.475626 |
trmU | IL1310 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 1407015 | 1116 | + | 0.477599 |
trpS | IL2323 | Tryptophanyl-tRNA synthetase | chromosome | CDS | 2489070 | 1008 | - | 0.469246 |
truA | IL1017 | Pseudouridylate synthase (tRNA psi55) | chromosome | CDS | 1086520 | 786 | - | 0.507634 |
truB | IL0966 | tRNA pseudouridine 5S synthase | chromosome | CDS | 1019873 | 933 | - | 0.489818 |
tsf | IL0844 | Translation elongation factor Ts | chromosome | CDS | 900836 | 879 | - | 0.459613 |
tufB_1 | IL0338 | Translation elongation factor EF-Tu | chromosome | CDS | 348574 | 1185 | + | 0.496203 |
tufB_2 | IL0350 | Translation elongation factor EF-Tu | chromosome | CDS | 365324 | 1185 | + | 0.496203 |
tyrS | IL2236 | Tyrosyl-tRNA synthetase | chromosome | CDS | 2391286 | 1206 | - | 0.464345 |
valS | IL1950 | Valyl-tRNA synthetase | chromosome | CDS | 2075023 | 2850 | + | 0.483158 |