Gene list
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COG category: Translation, ribosomal structure and biogenesis
Organism: Geobacter sulfurreducens PCA, PCA
Number of genes found: 173
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Geobacter sulfurreducens PCA, PCA | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | GSU1263 | conserved hypothetical protein TIGR00253 | chromosome | CDS | 1375122 | 297 | - | 0.606061 |
NA | GSU1749 | hypothetical protein | chromosome | CDS | 1914239 | 513 | - | 0.512671 |
NA | GSU1596 | Sua5/YciO/YrdC/YwlC family protein | chromosome | CDS | 1749952 | 612 | + | 0.544118 |
NA | GSU3205 | MiaB-like tRNA modifying enzyme YliG | chromosome | CDS | 3511168 | 1344 | + | 0.620536 |
NA | GSU3320 | ribosomal protein L11 methyltransferase, putative | chromosome | CDS | 3646373 | 597 | - | 0.651591 |
NA | GSU1475 | RNA methyltransferase, TrmH family, group 1 | chromosome | CDS | 1616582 | 768 | + | 0.598958 |
NA | GSU0457 | lipoprotein, putative | chromosome | CDS | 487869 | 690 | - | 0.668116 |
NA | GSU3160 | RNA pseudouridine synthase family protein | chromosome | CDS | 3466826 | 753 | + | 0.687915 |
NA | GSU1206 | HDIG domain protein | chromosome | CDS | 1310650 | 597 | + | 0.663317 |
NA | GSU3379 | translation initiation factor, putative, aIF-2BI family | chromosome | CDS | 3714645 | 1041 | - | 0.638809 |
NA | GSU0871 | radical SAM domain protein/B12 binding domain protein | chromosome | CDS | 927359 | 1665 | + | 0.672072 |
NA | GSU3254 | phosphoglucomutase/phosphomannomutase family protein | chromosome | CDS | 3566149 | 2511 | + | 0.614098 |
NA | GSU1200 | ribosomal protein S1 | chromosome | CDS | 1303580 | 1209 | + | 0.634409 |
NA | GSU0691 | translation initation factor SUI1, putative | chromosome | CDS | 730972 | 366 | - | 0.669399 |
NA | GSU0546 | peptidyl-tRNA hydrolase domain protein | chromosome | CDS | 578710 | 381 | + | 0.648294 |
NA | GSU0921 | ribonuclease, Rne/Rng family protein | chromosome | CDS | 986118 | 2427 | - | 0.638237 |
NA | GSU1587 | ribosomal protein L7Ae family protein | chromosome | CDS | 1739855 | 618 | + | 0.580906 |
NA | GSU1387 | CRISPR-associated protein, CT1975 family | chromosome | CDS | 1516947 | 1095 | + | 0.546119 |
NA | GSU0434 | conserved hypothetical protein | chromosome | CDS | 464944 | 1005 | - | 0.629851 |
NA | GSU1197 | RNA methyltransferase, TrmH family, group 2, putative | chromosome | CDS | 1300548 | 495 | - | 0.626263 |
NA | GSU1753 | lysyl-tRNA synthetase-related protein | chromosome | CDS | 1915994 | 924 | + | 0.62013 |
NA | GSU1329 | tRNA synthetases class I (E and Q), catalytic domain protein | chromosome | CDS | 1453943 | 945 | + | 0.719577 |
NA | GSU1005 | dihydrouridine synthase family protein | chromosome | CDS | 1085392 | 978 | - | 0.652352 |
NA | GSU3307 | histidyl-tRNA synthetase, putative | chromosome | CDS | 3631136 | 1317 | + | 0.609719 |
NA | GSU2115 | hypothetical protein | chromosome | CDS | 2333091 | 522 | - | 0.568965 |
NA | GSU1181 | hypothetical protein | chromosome | CDS | 1288446 | 318 | - | 0.515723 |
NA | GSU2455 | conserved hypothetical protein | chromosome | CDS | 2694757 | 441 | - | 0.580499 |
NA | GSU3130 | lipoprotein, putative | chromosome | CDS | 3430691 | 663 | - | 0.647059 |
NA | GSU3103 | modification methylase, HemK family | chromosome | CDS | 3406891 | 855 | - | 0.636257 |
NA | GSU0065 | cytidine/deoxycytidylate deaminase family protein | chromosome | CDS | 81425 | 540 | + | 0.581481 |
NA | GSU1452 | RNA methyltransferase, TrmA family | chromosome | CDS | 1589716 | 1488 | - | 0.604167 |
NA | GSU0443 | ribonuclease D, putative | chromosome | CDS | 475021 | 1146 | + | 0.657068 |
NA | GSU1748 | RNA methyltransferase, TrmA family | chromosome | CDS | 1912930 | 1317 | - | 0.611997 |
NA | GSU0216 | conserved hypothetical protein | chromosome | CDS | 225681 | 216 | - | 0.564815 |
NA | GSU0035 | 2',5' RNA ligase, putative | chromosome | CDS | 45707 | 540 | - | 0.627778 |
NA | GSU1462 | RNA methyltransferase, TrmH family, group 3 | chromosome | CDS | 1602445 | 738 | + | 0.605691 |
NA | GSU2749 | NOL1/NOP2/sun family protein | chromosome | CDS | 3024642 | 960 | + | 0.683333 |
NA | GSU2568 | MiaB-like tRNA modifying enzyme | chromosome | CDS | 2829875 | 1305 | - | 0.679693 |
NA | GSU2235 | endoribonuclease L-PSP, putative | chromosome | CDS | 2450222 | 381 | - | 0.616798 |
NA | GSU2793 | hypothetical protein | chromosome | CDS | 3072206 | 294 | - | 0.632653 |
NA | GSU0971 | peptidyl-tRNA hydrolase domain protein | chromosome | CDS | 1047989 | 324 | - | 0.595679 |
NA | GSU3382 | hypothetical protein | chromosome | CDS | 3718661 | 345 | - | 0.614493 |
NA | GSU1843 | metallo-beta-lactamase family protein | chromosome | CDS | 2011297 | 1428 | + | 0.642157 |
NA | GSU3353 | RNA pseudouridine synthase family protein | chromosome | CDS | 3684041 | 891 | - | 0.671156 |
NA | GSU2184 | polyA polymerase family protein | chromosome | CDS | 2393737 | 1293 | - | 0.673627 |
alaS | GSU0148 | alanyl-tRNA synthetase | chromosome | CDS | 163809 | 2628 | + | 0.648782 |
argS | GSU1812 | arginyl-tRNA synthetase | chromosome | CDS | 1978284 | 1707 | - | 0.602226 |
asnS | GSU1156 | asparaginyl-tRNA synthetase | chromosome | CDS | 1261648 | 1386 | + | 0.635642 |
aspS | GSU1463 | aspartyl-tRNA synthetase | chromosome | CDS | 1603748 | 1785 | + | 0.563585 |
cafA | GSU3239 | ribonuclease G | chromosome | CDS | 3551672 | 1596 | - | 0.587719 |
cysS | GSU3365 | cysteinyl-tRNA synthetase | chromosome | CDS | 3697619 | 1446 | - | 0.600277 |
dbpA | GSU0189 | ATP-dependent RNA helicase DbpA | chromosome | CDS | 201957 | 1383 | + | 0.63919 |
def-1 | GSU0129 | polypeptide deformylase | chromosome | CDS | 144291 | 549 | + | 0.579235 |
def-2 | GSU3456 | polypeptide deformylase | chromosome | CDS | 3803386 | 510 | - | 0.623529 |
dtd | GSU0525 | D-tyrosyl-tRNA(Tyr) deacylase | chromosome | CDS | 559887 | 459 | - | 0.623094 |
efp-1 | GSU0465 | translation elongation factor P | chromosome | CDS | 495363 | 564 | + | 0.625886 |
efp-2 | GSU1752 | translation elongation factor P | chromosome | CDS | 1915425 | 564 | + | 0.567376 |
fmt | GSU0130 | methionyl-tRNA formyltransferase | chromosome | CDS | 144850 | 954 | + | 0.644654 |
frr | GSU1918 | ribosome recycling factor | chromosome | CDS | 2097242 | 558 | - | 0.532258 |
fusA-1 | GSU1933 | translation elongation factor G | chromosome | CDS | 2113735 | 2094 | - | 0.58978 |
fusA-2 | GSU2529 | translation elongation factor G | chromosome | CDS | 2788182 | 2070 | + | 0.678261 |
fusA-3 | GSU2860 | translation elongation factor G | chromosome | CDS | 3130763 | 2079 | - | 0.545936 |
gatA | GSU3381 | glutamyl-tRNA(Gln) amidotransferase, A subunit | chromosome | CDS | 3717158 | 1458 | - | 0.662551 |
gatB | GSU3380 | glutamyl-tRNA(Gln) amidotransferase, B subunit | chromosome | CDS | 3715702 | 1440 | - | 0.63125 |
gatC | GSU3383 | glutamyl-tRNA(Gln) amidotransferase, C subunit | chromosome | CDS | 3718983 | 288 | - | 0.572917 |
gid | GSU2547 | gid protein | chromosome | CDS | 2808536 | 1305 | - | 0.665134 |
glnS | GSU3366 | glutaminyl-tRNA synthetase | chromosome | CDS | 3699097 | 1665 | - | 0.624625 |
gltX | GSU1219 | glutamyl-tRNA synthetase | chromosome | CDS | 1322000 | 1401 | + | 0.617416 |
glyQ | GSU0578 | glycyl-tRNA synthetase, alpha subunit | chromosome | CDS | 607314 | 879 | + | 0.624573 |
glyS | GSU0579 | glycyl-tRNA synthetase, beta subunit | chromosome | CDS | 608194 | 2064 | + | 0.662791 |
hisS | GSU1659 | histidyl-tRNA synthetase | chromosome | CDS | 1821195 | 1242 | + | 0.582931 |
ileS | GSU3136 | isoleucyl-tRNA synthetase | chromosome | CDS | 3439773 | 2772 | - | 0.638167 |
infA | GSU1750 | translation initiation factor IF-1 | chromosome | CDS | 1914919 | 219 | + | 0.506849 |
infB | GSU1588 | translation initiation factor IF-2 | chromosome | CDS | 1740450 | 2652 | + | 0.599548 |
infC | GSU1516 | translation initiation factor IF-3 | chromosome | CDS | 1664075 | 519 | + | 0.547206 |
ksgA | GSU1864 | dimethyladenosine transferase | chromosome | CDS | 2040541 | 831 | - | 0.624549 |
leuS | GSU2209 | leucyl-tRNA synthetase | chromosome | CDS | 2422929 | 2475 | - | 0.618182 |
lysS | GSU2271 | lysyl-tRNA synthetase | chromosome | CDS | 2487384 | 1476 | - | 0.605014 |
map | GSU2835 | methionine aminopeptidase, type I | chromosome | CDS | 3117790 | 747 | - | 0.534137 |
metG | GSU2232 | methionyl-tRNA synthetase | chromosome | CDS | 2447694 | 1533 | + | 0.59426 |
miaA | GSU2000 | tRNA delta(2)-isopentenylpyrophosphate transferase | chromosome | CDS | 2191725 | 936 | - | 0.602564 |
miaB | GSU2198 | tRNA-i(6)A37 modification enzyme MiaB | chromosome | CDS | 2410541 | 1341 | - | 0.604773 |
pcnB | GSU3250 | polyA polymerase | chromosome | CDS | 3561440 | 1368 | + | 0.669591 |
pheS | GSU1519 | phenylalanyl-tRNA synthetase, alpha subunit | chromosome | CDS | 1665346 | 1020 | + | 0.592157 |
pnp | GSU1593 | polyribonucleotide nucleotidyltransferase | chromosome | CDS | 1746052 | 2094 | + | 0.582617 |
prfA | GSU3104 | peptide chain release factor 1 | chromosome | CDS | 3407771 | 1068 | - | 0.623595 |
prfB | GSU2278 | peptide chain release factor 2, programmed frameshift | chromosome | CDS | 2494365 | 1120 | - | 0.609821 |
prfC | GSU0138 | peptide chain release factor 3 | chromosome | CDS | 152504 | 1581 | + | 0.598988 |
prmA | GSU0447 | ribosomal protein L11 methyltransferase | chromosome | CDS | 477851 | 900 | - | 0.67 |
proS | GSU1460 | prolyl-tRNA synthetase | chromosome | CDS | 1599970 | 1713 | + | 0.61763 |
pth | GSU0663 | peptidyl-tRNA hydrolase | chromosome | CDS | 699603 | 582 | + | 0.589347 |
queA | GSU2620 | S-adenosylmethionine:tRNAribosyltransferase-isom erase | chromosome | CDS | 2890299 | 1032 | - | 0.679264 |
rbfA | GSU1589 | ribosome-binding factor A | chromosome | CDS | 1743169 | 357 | + | 0.537815 |
relE | GSU2439 | RelE protein | chromosome | CDS | 2674078 | 291 | + | 0.5189 |
rhlB | GSU0522 | ATP-dependent RNA helicase RhlB | chromosome | CDS | 555700 | 1332 | + | 0.638889 |
rhlE-1 | GSU0491 | ATP-dependent RNA helicase RhlE | chromosome | CDS | 523215 | 1353 | - | 0.644494 |
rhlE-2 | GSU0914 | ATP-dependent RNA helicase RhlE | chromosome | CDS | 980161 | 1344 | + | 0.6875 |
rimM | GSU0645 | 16S rRNA processing protein RimM | chromosome | CDS | 678444 | 519 | + | 0.570328 |
rluB | GSU1403 | ribosomal large subunit pseudouridine synthase B | chromosome | CDS | 1544951 | 744 | + | 0.666667 |
rluC | GSU0671 | ribosomal large subunit pseudouridine synthase C | chromosome | CDS | 704918 | 891 | - | 0.631874 |
rluD | GSU0082 | ribosomal large subunit pseudouridine synthase D | chromosome | CDS | 93714 | 969 | + | 0.654283 |
rph | GSU1795 | ribonuclease PH | chromosome | CDS | 1960791 | 717 | - | 0.560669 |
rplA | GSU2866 | ribosomal protein L1 | chromosome | CDS | 3143569 | 705 | - | 0.607092 |
rplB | GSU2854 | ribosomal protein L2 | chromosome | CDS | 3126780 | 825 | - | 0.53697 |
rplC | GSU2857 | ribosomal protein L3 | chromosome | CDS | 3128558 | 633 | - | 0.551343 |
rplD | GSU2856 | ribosomal protein L4 | chromosome | CDS | 3127910 | 624 | - | 0.504808 |
rplE | GSU2845 | ribosomal protein L5 | chromosome | CDS | 3123285 | 540 | - | 0.505556 |
rplF | GSU2842 | ribosomal protein L6 | chromosome | CDS | 3122077 | 540 | - | 0.538889 |
rplI | GSU0668 | ribosomal protein L9 | chromosome | CDS | 703129 | 447 | + | 0.561521 |
rplJ | GSU2865 | ribosomal protein L10 | chromosome | CDS | 3142865 | 525 | - | 0.579048 |
rplK | GSU2867 | ribosomal protein L11 | chromosome | CDS | 3144291 | 426 | - | 0.561033 |
rplL | GSU2864 | ribosomal protein L7/L12 | chromosome | CDS | 3142434 | 384 | - | 0.585938 |
rplM | GSU2876 | ribosomal protein L13 | chromosome | CDS | 3152018 | 432 | - | 0.564815 |
rplN | GSU2847 | ribosomal protein L14 | chromosome | CDS | 3124189 | 369 | - | 0.514905 |
rplO | GSU2838 | ribosomal protein L15 | chromosome | CDS | 3120512 | 447 | - | 0.548098 |
rplP | GSU2850 | ribosomal protein L16 | chromosome | CDS | 3125019 | 423 | - | 0.550827 |
rplQ | GSU2830 | ribosomal protein L17 | chromosome | CDS | 3114556 | 528 | - | 0.5625 |
rplR | GSU2841 | ribosomal protein L18 | chromosome | CDS | 3121690 | 369 | - | 0.528455 |
rplS | GSU0648 | ribosomal protein L19 | chromosome | CDS | 680352 | 357 | + | 0.560224 |
rplT | GSU1518 | ribosomal protein L20 | chromosome | CDS | 1664918 | 354 | + | 0.570621 |
rplU | GSU3236 | ribosomal protein L21 | chromosome | CDS | 3550937 | 309 | - | 0.530744 |
rplV | GSU2852 | ribosomal protein L22 | chromosome | CDS | 3126113 | 336 | - | 0.553571 |
rplW | GSU2855 | ribosomal protein L23 | chromosome | CDS | 3127629 | 285 | - | 0.501754 |
rplX | GSU2846 | ribosomal protein L24 | chromosome | CDS | 3123839 | 327 | - | 0.519878 |
rplY | GSU0662 | ribosoma protein L25 | chromosome | CDS | 698985 | 585 | + | 0.586325 |
rpmA | GSU3235 | ribosomal protein L27 | chromosome | CDS | 3550599 | 258 | - | 0.600775 |
rpmB | GSU2234 | ribosomal protein L28 | chromosome | CDS | 2449922 | 192 | + | 0.5625 |
rpmC | GSU2849 | ribosomal protein L29 | chromosome | CDS | 3124841 | 195 | - | 0.461538 |
rpmD | GSU2839 | ribosomal protein L30 | chromosome | CDS | 3120978 | 180 | - | 0.522222 |
rpmE | GSU3107 | ribosomal protein L31 | chromosome | CDS | 3410597 | 198 | - | 0.535354 |
rpmF | GSU1599 | ribosomal protein L32 | chromosome | CDS | 1751673 | 183 | + | 0.551913 |
rpmG | GSU2870 | ribosomal protein L33 | chromosome | CDS | 3145659 | 150 | - | 0.506667 |
rpmI | GSU1517 | ribosomal protein L35 | chromosome | CDS | 1664631 | 198 | + | 0.535354 |
rpsA | GSU2603 | ribosomal protein S1 | chromosome | CDS | 2870277 | 1725 | - | 0.63942 |
rpsB | GSU1921 | ribosomal protein S2 | chromosome | CDS | 2099339 | 756 | - | 0.568783 |
rpsC | GSU2851 | ribosomal protein S3 | chromosome | CDS | 3125460 | 636 | - | 0.52673 |
rpsD | GSU2832 | ribosomal protein S4 | chromosome | CDS | 3116173 | 627 | - | 0.53429 |
rpsE | GSU2840 | ribosomal protein S5 | chromosome | CDS | 3121179 | 489 | - | 0.550102 |
rpsF | GSU0665 | ribosomal protein S6 | chromosome | CDS | 701466 | 354 | + | 0.59322 |
rpsG | GSU2861 | ribosomal protein S7 | chromosome | CDS | 3132883 | 471 | - | 0.543524 |
rpsH | GSU2843 | ribosomal protein S8 | chromosome | CDS | 3122645 | 399 | - | 0.533835 |
rpsI | GSU2875 | ribosomal protein S9 | chromosome | CDS | 3151592 | 393 | - | 0.608142 |
rpsJ | GSU2858 | ribosomal protein S10 | chromosome | CDS | 3129218 | 309 | - | 0.533981 |
rpsK | GSU2833 | ribosomal protein S11 | chromosome | CDS | 3116837 | 396 | - | 0.568182 |
rpsM | GSU2834 | ribosomal protein S13 | chromosome | CDS | 3117254 | 369 | - | 0.571816 |
rpsN | GSU2844 | ribosomal protein S14 | chromosome | CDS | 3123080 | 186 | - | 0.526882 |
rpsO | GSU1592 | ribosomal protein S15 | chromosome | CDS | 1745512 | 267 | + | 0.524345 |
rpsP | GSU0643 | ribosomal protein S16 | chromosome | CDS | 677853 | 288 | + | 0.552083 |
rpsQ | GSU2848 | ribosomal protein S17 | chromosome | CDS | 3124571 | 258 | - | 0.468992 |
rpsR | GSU0666 | ribosomal protein S18 | chromosome | CDS | 701840 | 312 | + | 0.592949 |
rpsS | GSU2853 | ribosomal protein S19 | chromosome | CDS | 3126471 | 282 | - | 0.492908 |
rpsT | GSU2206 | ribosomal protein S20 | chromosome | CDS | 2421038 | 264 | + | 0.590909 |
rpsU-1 | GSU0906 | ribosomal protein S21 | chromosome | CDS | 972287 | 201 | - | 0.552239 |
rpsU-2 | GSU3093 | ribosomal protein S21 | chromosome | CDS | 3399113 | 198 | - | 0.489899 |
selB | GSU0102 | selenocysteine-specific translation elongation factor | chromosome | CDS | 116665 | 1911 | + | 0.637886 |
serS | GSU0037 | seryl-tRNA synthetase | chromosome | CDS | 47406 | 1269 | + | 0.584712 |
sun | GSU3373 | Sun protein | chromosome | CDS | 3707306 | 1347 | + | 0.648849 |
tgt-1 | GSU1175 | queuine tRNA-ribosyltransferase | chromosome | CDS | 1280212 | 1107 | - | 0.596206 |
tgt-2 | GSU2619 | queuine tRNA-ribosyltransferase | chromosome | CDS | 2889104 | 1122 | - | 0.647059 |
thrS | GSU1515 | threonyl-tRNA synthetase | chromosome | CDS | 1662153 | 1911 | + | 0.59079 |
trmD | GSU0646 | tRNA (guanine-N1)-methyltransferase | chromosome | CDS | 678959 | 738 | + | 0.602981 |
trmU | GSU2569 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 2831179 | 1098 | - | 0.681239 |
trpS | GSU1833 | tryptophanyl-tRNA synthetase | chromosome | CDS | 1998944 | 984 | - | 0.597561 |
truA | GSU2877 | tRNA pseudouridine synthase A | chromosome | CDS | 3152554 | 735 | - | 0.661224 |
truB | GSU1591 | tRNA pseudouridine synthase B | chromosome | CDS | 1744474 | 915 | + | 0.584699 |
tsf | GSU1920 | translation elongation factor Ts | chromosome | CDS | 2098613 | 651 | - | 0.557604 |
tuf-1 | GSU2859 | translation elongation factor Tu | chromosome | CDS | 3129545 | 1191 | - | 0.605374 |
tuf-2 | GSU2871 | translation elongation factor Tu | chromosome | CDS | 3145862 | 1191 | - | 0.607053 |
tylA | GSU1420 | hemolysin A | chromosome | CDS | 1557042 | 684 | + | 0.619883 |
tyrS | GSU1139 | tyrosyl-tRNA synthetase | chromosome | CDS | 1222614 | 1212 | + | 0.556931 |
valS | GSU2045 | valyl-tRNA synthetase | chromosome | CDS | 2242180 | 2664 | - | 0.618994 |
ychF | GSU0664 | GTP binding protein YchF | chromosome | CDS | 700226 | 1095 | + | 0.615525 |
yfiA | GSU1886 | ribosomal subunit interface protein | chromosome | CDS | 2064476 | 546 | - | 0.538462 |